LOCUS       DASPFX010000001         2862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_141254, whole genome shotgun sequence.
ACCESSION   DASPFX010000001 DASPFX010000000
VERSION     DASPFX010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141254"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            572..1648
                     /locus_tag="VD694_00005"
     CDS             572..1648
                     /locus_tag="VD694_00005"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HXW11111.1"
                     /translation="MSKRPTSIEYLTYFNCGHVLKDATGKTVRQFTLIIEENQKIPIT
                     YEGHIFEGWTFNGTIPGPTMRVTEGDLVKIRVINSNENTHAHSLFTQSTNYGKQGSFM
                     RTGLPGGTISPGKSFTYEFFAGPYGVYPYSCQVEPMADHINRGLYGMIIIDPKEPRPK
                     MTEMAMLLNGYDLDLDQEGPITLPPVDSIEGVESNMPMNSSSNNNPDAGTNMSSMNHV
                     SVPSIPDNGNGKSTSREPRVNEIYTVNGKAFDYMMNPIVIHTSEPYRVYVLNMLEFDS
                     VNSIHVHGAMFDWYSSGTSKTASFLNDIVTLAKGDRGIMEFTYLFPGTYMFHAHQALF
                     TDLGWMGLFDARGNPVEASRIDPT"
     gene            1895..>2862
                     /locus_tag="VD694_00010"
     CDS             1895..>2862
                     /locus_tag="VD694_00010"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HXW11112.1"
                     /translation="MINNQIQWWLLLTAFIFILAVITFYPNEFVIGNESASVVIPKGS
                     ASPEVDITKLTPRQWYIPSQISINQNDTVTWINKDTESHTVTSGIGEGLESLVNKKRG
                     TKNGIFDSGVFKPDTNWTYQFQQPGIFTYFCTLHPWMEGTVIVKKTTPAAVPNYPVDA
                     SGQRQTVFPVHTLTSDKKYDIDMAWSPKALLVGDKISFIIDFSDAVTNKRLHLLSYDF
                     VIFQNGEELLRRSGLSQVGADVQEFIFTKPGVINVRIENVADNKQSFTAFNSTIFENP
                     NVSSAGANQLGQSPSGNLPINPFKVSTLTLVWITYIIIIGIPAAVAV"
BASE COUNT          956 a          499 c          544 g          863 t
ORIGIN      
        1 ttagagtata agagaatacg cttaagttca agttaatatt agaataacct aaccaaaata
       61 tgattatact aaagatatct acgtatgtgt ttttatatgt ttcaattata ctgtaactct
      121 aatcactttc aacttaaaat ggtaaatgat aaataaaaat caattagggg tcatatcaat
      181 ttggaagaca atggtagcaa atacaaacca caatcgttac tcgttttagt tataatctat
      241 cttacgatag tttttattat ggaaaagcgg cgactaatag tattaagtca atgtcctgga
      301 tgtagatatt tggtagtagt tttgttaccg gataattaat tagatttgac accgaaccta
      361 taatatgatg ttctgaacat ttttattggt aaccgatttt tgataaaaca tgtttaggcg
      421 atatggaatt tttttctcat tattgccatc gatcattttg gcattttctt tttctcacta
      481 ttctttcata aatttatctt cgtatgccca gacttctgag actccaattt ctcaacagcc
      541 atatgacata ttaaagaatt gtacaaccga tttgagcaaa agaccaactt caatagaata
      601 tctgacttat tttaattgcg gtcacgtctt aaaagatgcg actggaaaga cggtaagaca
      661 attcacccta attattgagg aaaatcaaaa aatacctata acttatgaag gtcatatttt
      721 cgaaggctgg acgtttaatg gcacgatacc gggaccaaca atgagagtca cagaaggaga
      781 cttggttaag ataagagtga ttaacagtaa cgagaataca catgctcatt cactttttac
      841 acaatctaca aattacggta agcagggttc ctttatgagg actggactac ctggagggac
      901 catttctcca ggcaaaagtt ttacatatga attttttgcc ggaccttatg gggtgtatcc
      961 ttattcctgt caggtagaac caatggcgga tcatataaac cgaggattgt atggaatgat
     1021 tataatagat ccaaaagagc cccgtcctaa aatgacagaa atggctatgc ttctgaatgg
     1081 ttatgacctg gatttagatc aagaaggacc gataacattg ccgccggttg attcaattga
     1141 gggggttgaa agcaacatgc cgatgaattc cagtagtaac aataatcctg atgcaggaac
     1201 gaatatgagt agcatgaatc atgtttctgt tccttcaatt ccagataacg gtaatggtaa
     1261 aagcacttcc agagaaccga gagtcaatga aatctacaca gtaaatggca aagcatttga
     1321 ttacatgatg aatcctattg tgatacacac aagcgagcct tatcgtgtct acgttctaaa
     1381 catgctcgag tttgactctg tgaattcgat acatgtacat ggcgctatgt ttgattggta
     1441 ttcctctggt accagtaaaa ctgccagttt tcttaatgat atagtaacat tagcgaaagg
     1501 agaccgagga ataatggaat ttacttattt attccctgga acttatatgt ttcatgcaca
     1561 tcaagcgtta tttaccgatc ttggatggat gggacttttt gatgcaagag gaaatcctgt
     1621 agaggcatca cgaatcgacc caacttaaaa acgggttcga gatttatcag gtttggatta
     1681 tcacaaatct atacgagcag aaaagaaacg aattgatttt taataacgca ggatggatat
     1741 ttgaggaaat tgccaaaaac ttatctacaa cctcagccac aaaattcttg actcagcacc
     1801 ttgtcaaaat tttgcttcct cctttttaga attcttccaa agaatgtact atggataaaa
     1861 taaaacaata aaaatgtcaa ggagatataa caatatgata aacaatcaga ttcaatggtg
     1921 gcttttgcta actgcattca tttttatctt agcagtcata acattttatc caaatgaatt
     1981 tgttattggg aatgaatccg caagtgtggt aataccaaaa ggttcagcca gtccagaagt
     2041 tgatattaca aaacttacgc cgagacagtg gtacatcccg tcgcaaattt caataaatca
     2101 aaatgatact gttacatgga taaataaaga cacagagagc catactgtta ctagcggtat
     2161 tggagaggga ttagaaagtt tagtcaataa gaagcgggga acaaagaatg gaatttttga
     2221 cagtggcgta tttaagcccg atacgaactg gacgtatcaa tttcaacaac ccggaatatt
     2281 tacctatttt tgtactttgc atccgtggat ggaaggaact gttattgtta aaaaaactac
     2341 cccagctgct gttccaaatt atcctgtcga cgcatcgggg caaaggcaaa cagtcttccc
     2401 agttcatact ctaacaagcg ataaaaaata tgatatagat atggcttgga gccccaaagc
     2461 tttactggtg ggggataaga tctccttcat aatagatttc tccgatgcgg taactaacaa
     2521 gagacttcat ctgttatctt atgattttgt tatttttcag aatggagagg agcttttgag
     2581 aagatcaggt ttatcacaag ttggagctga tgttcaggaa ttcatattta ccaagcctgg
     2641 tgtaataaat gtcagaatcg aaaatgttgc agataataaa caatcgttca cagcgtttaa
     2701 tagcacaata ttcgaaaatc caaatgtttc ttcagccgga gcaaatcagt taggacagtc
     2761 accaagcggc aatcttccga tcaacccatt caaggtaagc accctaactc tagtatggat
     2821 aacgtacata attataattg gtatccctgc tgcagttgcc gt
//
LOCUS       DASPFX010000002         3493 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_425954, whole genome shotgun sequence.
ACCESSION   DASPFX010000002 DASPFX010000000
VERSION     DASPFX010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3493
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425954"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VD694_00015"
     CDS             <1..375
                     /locus_tag="VD694_00015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11113.1"
                     /translation="LQSEQQIRNLKTQSEQQIYSRIMDARLKLESTETFTKMAQESPI
                     FADRFTVVDNPDEYYTVVAFLDLFEFLFRLNRRDMIDAEIWSRWKGLAKTIMTIPKFK
                     RVWEKTKDVHASEYRNFIDSLI"
     gene            431..1702
                     /locus_tag="VD694_00020"
     CDS             431..1702
                     /locus_tag="VD694_00020"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HXW11114.1"
                     /translation="MTLSKKRIVILGAGYAGIFLATNISRYTKGKAGEVILIDRNPYH
                     QLLQEIHLVAAGFRTANEVKIPILTLIDGMNIKFIQSTTKQIRPDKNLVVLESTEINY
                     DILIICLGASTKYFNIKGAKENSLPLRSVADASLIYDKVSEFIKSDNNHDIVIVGGGA
                     TGVSLGGALSDLIKDSGKTNSISIKIIEALPTILSGWDERLVKKVNEVLNEKGITIMT
                     STAVSGVENGGNSISVNQGSNIHSSLTIWTAGVKGYDLSIDPGVEKTKDGKIIVNEFC
                     QIDRYPNIFSIGDISAVKHENGKLYPPLAQIAIREAKYLSKIIPKYFLDSNSDFVKGL
                     VDEKFEYSIKVQLISLGNDDYVGLFNHYIISGNLAKLVEEFAKSTYIKSLKKGGRDIM
                     DTSLYEDDIVSQLLAGITFARFTFMKWLQKG"
     gene            complement(1858..2937)
                     /locus_tag="VD694_00025"
     CDS             complement(1858..2937)
                     /locus_tag="VD694_00025"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HXW11115.1"
                     /translation="MDNEVIIQRDDKWDPRRKKYFHPRFAIVLQGQEIKWTNHDTRNH
                     RLVSGNSDTLISDGVFDSGEILIGKSGSIRFNTSERASSISYFCSLHPNERGIVIVLP
                     REGGLLSDEQRLQLLESTLVHDGSPEFKKMHTSLEKYVDPVVLEQIRDPELVTMQNRI
                     LTIVFWDLSGFSVLCEKLKSHKELIVEFLREYFSEAAMIIQKHKGVLDKFMGDGIMAF
                     FGYKDTDANDNGRKGAISAVKAAIELRDFFDEMKLEWINLWITKTDQQVISTDLRCGM
                     NTGNVLVGLILTDVRDQFTTIGSNVNLASRLESVANKDQIIVSPSTKIRIKDQFSLRT
                     IPIERPIKGFENISECYEIIDKKQT"
     gene            3140..3382
                     /locus_tag="VD694_00030"
     CDS             3140..3382
                     /locus_tag="VD694_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11116.1"
                     /translation="MVEIRCRIIAEPREGTRPIYRSNSNNRSIPEPFIHGKYGGELDY
                     VCYNCASILAQNVSRAEVPTNAVFQCPNCGYYNEAV"
BASE COUNT         1201 a          588 c          624 g         1080 t
ORIGIN      
        1 ttgcaaagtg agcaacagat aagaaatttg aaaacccaaa gcgagcagca gatatattct
       61 agaataatgg atgccaggct taaactggaa agcacggaga cgtttaccaa aatggcacag
      121 gaaagtccaa tttttgcaga ccgatttaca gtggtagata atcctgacga atattacacc
      181 gttgtagcat ttctcgactt atttgaattt ttattccgcc ttaacaggag agatatgata
      241 gatgctgaaa tctggtcacg ttggaaaggc cttgcaaaga caataatgac aataccaaaa
      301 tttaagagag tatgggagaa gacgaaggat gtccatgctt ctgaatatag aaattttatt
      361 gattcactca tatagaacat gagaataata gaataattca tgtatgctct aaagattaga
      421 agaccataag atgactttat ctaagaaaag aatagttata cttggcgcag gctatgcagg
      481 aatattttta gccactaaca tttctcgata tacaaaggga aaagcaggag aagtaatact
      541 tattgataga aatccttatc atcaattgct ccaagagatt catttagtag ctgcaggttt
      601 tagaacagca aatgaagtaa aaataccaat tttaacatta atagatggaa tgaatataaa
      661 attcattcaa tctactacaa aacaaatacg accggataaa aatctggttg ttttagaatc
      721 gactgaaatt aattatgata tccttataat atgtctgggt gcttctacaa agtacttcaa
      781 tattaaagga gctaaagaaa atagtttacc attacgctct gttgctgatg catcgttgat
      841 ctatgacaaa gtgagcgagt ttatcaaatc agataataat cacgacattg tgatagtagg
      901 aggtggtgca acaggagtta gccttggtgg tgcgctatca gatcttataa aggatagtgg
      961 aaaaaccaac agcatttcta taaaaattat agaagcactg ccaactatcc tttcaggatg
     1021 ggatgaacgt ctagttaaga aagtaaacga agtattaaat gaaaaaggaa taacaattat
     1081 gactagcact gcagttagcg gagtcgaaaa tggcggtaat agtatcagtg ttaatcaagg
     1141 atcgaatatt cattcctctc tcactatttg gaccgcaggt gtcaaaggtt atgatctatc
     1201 aatagatccg ggagttgaaa aaactaaaga tggcaaaata attgtaaatg agttctgtca
     1261 gatcgataga tatccaaata tcttttcgat aggtgacata tctgcagtaa agcacgaaaa
     1321 tggaaaattg tatccaccgt tggctcagat tgcaataaga gaagcaaaat atctttcaaa
     1381 aattataccg aaatatttcc ttgatagtaa tagtgatttt gtaaagggtt tagtagatga
     1441 aaaatttgaa tacagtatca aggtacaatt aatctcgttg ggaaatgatg attatgttgg
     1501 attatttaac cactatatca taagcggcaa tcttgcgaag ttagtggagg aatttgcaaa
     1561 aagtacatac ataaaatcac ttaagaaagg tggaagagat attatggaca caagtctata
     1621 tgaagacgat atagtctctc aattactagc tggaattacc tttgcacgtt ttacttttat
     1681 gaaatggtta caaaagggat agatagatac ctcgcaatga tggaaaggag taatactaat
     1741 gggagaaaca aacaattttc tttgtcacat cagaaacaac ttaaccattg ctacagagat
     1801 ctgttgttgt ttttactgcc ccaaccacgc aaataaaatg atggacattt gaaggcgtta
     1861 cgtttgtttt ttatcaatta tttcataaca ttctgatata ttttcaaacc cctttattgg
     1921 tctctctatg gggattgttc taagactgaa ttgatctttt attcttattt ttgtagatgg
     1981 cgacacaatg atttggtctt tattagccac agattctagt ctgctagcca aatttacatt
     2041 gctcccaatt gtagtaaatt gatctctcac gtctgtcagt atgagtccaa ccaatacatt
     2101 ccctgtgttc attccacatc ttaaatcagt ggatattact tgctgatcag tctttgttat
     2161 ccaaagatta atccattcta atttcatttc atcaaaaaaa tccctaagct ctatagctgc
     2221 cttaactgca ctaatcgcac ctttccttcc attatcatta gcatcagtgt ctttgtaacc
     2281 aaaaaaagcc attattccat cccccatgaa tttgtcaagt acccctttat gcttttgaat
     2341 tatcattgct gcttctgaaa aatactctct cagaaactct acaattaact ctttgtgaga
     2401 cttgagtttt tcacataaaa cagaaaaccc acttaaatcc cagaatacaa tcgttagaat
     2461 cctattttgc atagttacta attctggatc tcgtatttgc tccagcacaa caggatcaac
     2521 atatttttct agactggtat gcattttttt gaattctgga gagccatcgt gaaccaacgt
     2581 ggattcgaga agttgtaaac gctgttcgtc actgagtaag cctccttccc ttggcaaaac
     2641 tattactatt cctctctcat taggatgtag ggagcaaaaa taggaaatgc tcgatgctct
     2701 ttcagaagta ttgaaacgta tagagccgga ctttcctatc aagatttctc cactatcaaa
     2761 tactccatca gaaatgagag tgtcagaatt acctgaaact aatctatggt ttctggtatc
     2821 atgatttgtc cactttattt cctgtccttg caatactatg gcaaacctag gatgaaaata
     2881 cttctttctt cttggatccc atttatcatc cctttggatt atcacttcat tatccaaaat
     2941 tcaacaccaa tctaacatct atagtataga gattactttt tatgttttaa ttgcaaattc
     3001 caaatttaaa tgagttaaaa agttaaaact tactttactt acgctttgtc tttgctaaaa
     3061 aatatgaaag ttttgaaaat tgtcacaact tgggtggaga taagtctaaa taaaaaaagg
     3121 attggaagaa aaataacgca tggttgaaat tagatgcaga atcatagctg aacctcgaga
     3181 aggaactaga cctatctaca gaagtaatag caataacaga agtatacctg aaccatttat
     3241 acacggaaaa tatggtggtg aacttgacta tgtctgttat aattgtgcta gtattcttgc
     3301 acagaatgtt tctcgagccg aagtacctac aaatgctgtt tttcagtgcc caaattgtgg
     3361 atactataac gaagcagtgt agagcaatcc aataatctgt tttcagttgg tggtatacta
     3421 ttgagatcta gattggtcat gaaaagaggt cacggaaagc aaagaatatc aaattgatgt
     3481 atgcatgaag aga
//
LOCUS       DASPFX010000003         2894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1993789, whole genome shotgun sequence.
ACCESSION   DASPFX010000003 DASPFX010000000
VERSION     DASPFX010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1993789"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VD694_00035"
     CDS             <1..501
                     /locus_tag="VD694_00035"
                     /inference="COORDINATES: protein motif:HMM:NF014856.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase C
                     domain-containing protein"
                     /protein_id="HXW11117.1"
                     /translation="AGIMIERGTNEPYVLEFNVRMGDPECQSILSRMDSSLLDYFEAT
                     IDERLDSMPPIRWKDKHSVCVVMASRGYPGKYQTGKIILGLDSGLDNDTHVFHAGTTK
                     NDSGEILTNGGRVLSVTSLADTLEGAKKKSYTLVSEIHWGDNEEYFRTDIASKGIKYL
                     NSTFSD"
     gene            complement(460..1068)
                     /locus_tag="VD694_00040"
     CDS             complement(460..1068)
                     /locus_tag="VD694_00040"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HXW11118.1"
                     /translation="MAATNTMNLDNQDQKSVLRNDILQKRNSLSIFEISSKSTAIQEK
                     LIGSNEFIESKSIGIYLPIGSEVQTKDIISNALESEKTILLPRIVQNDLHFFVVEKND
                     FDQDLFDVNKFGIKEPKKTNMKTEFIDLLIVPGIVFDCHGYRIGYGYGYYDKFMAKEK
                     FSKSIGLAYDFQVMKNPIPKFEYDEKIDILITESGIQVFDTF"
     gene            complement(1055..1915)
                     /locus_tag="VD694_00045"
     CDS             complement(1055..1915)
                     /locus_tag="VD694_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HXW11119.1"
                     /translation="MAKLIDGLLVSQHIKNIVKNEVSALVSKGIKPCLATVLVGDNQA
                     SATYVRNKLIAASSVGILTRDFKLPQNITQEELSKTIIELNHDENVHGILIQLPLPDQ
                     IEPSITNMVRHEKDVDGLTSYNLGLLLGGTPKMIPCTPLGIIELLDFYKIDVKGIDVA
                     IINRSNLVGKPLGILLMNRDATVTFFHSKSREMEDKLRNFDCIITAVGDRQKFVLTGN
                     MVKDGAIIFDVGITRINGKISGDVDFKSVSEKAAYITPVPGGVGPMTVTMLLKNTVYA
                     ASIINKIGSN"
     gene            complement(1982..2593)
                     /gene="purN"
                     /locus_tag="VD694_00050"
     CDS             complement(1982..2593)
                     /gene="purN"
                     /locus_tag="VD694_00050"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HXW11120.1"
                     /translation="MINLGILISGRGSNMESILNFVKENNIADICPKIIISSKPEAEG
                     LRKASKFGIPTRVVSNNSKGWEYDSEIVKVLQEYDVNPENGLVCLAGYMRLLSPEFVN
                     KYKMRILNIHPSLLPSFPGLNSQKKALDYGVKVTGCTVHFVDEGLDSGPIIAQKHVAV
                     LDNDTCETLSDRILEQEHILYPYCVQIFSENRISVQGRKVIVT"
BASE COUNT          860 a          523 c          489 g         1022 t
ORIGIN      
        1 gcaggaatca tgatagaacg tggtacaaat gaaccatacg tgcttgagtt caatgtgaga
       61 atgggtgatc cagaatgtca atccatcttg tcaagaatgg attcaagttt actagactat
      121 ttcgaggcaa ccattgatga aaggcttgat tcgatgccgc ccattaggtg gaaagataaa
      181 cattcagttt gcgtagtcat ggcttcgaga ggatatcccg gaaagtatca aactggaaaa
      241 atcattcttg gattagactc tggactggac aatgatacac atgtatttca tgcaggaact
      301 acgaaaaatg actcgggaga aattctcaca aatggcggta gggtattatc agttacatct
      361 ttagcagata cactcgaagg agccaagaaa aaatcctata ccttggtctc tgaaatccat
      421 tggggggata atgaggaata ctttagaaca gatatagcat caaaaggtat caaatacttg
      481 aattccactt tcagtgatta agatatctat tttttcatca tattcgaatt ttggaatagg
      541 atttttcatg acttgaaaat catacgctag accaatagat ttagaaaatt tttccttggc
      601 catgaatttg tcatagtatc catatccata gccaattctg tatccatgac aatcaaatac
      661 aattccagga acaattaaca ggtcaataaa ttctgttttc atattagttt tttttggctc
      721 tttaattccg aatttattta cgtcaaacaa atcttgatca aaatcatttt tttctactac
      781 aaaaaagtga agatcatttt gtactattcg aggtaacaat atggtcttct ctgattctag
      841 tgcattgctg attatgtctt ttgtttgtac ttccgaacct attggaagat aaataccaat
      901 ggatttggat tcaatgaatt cgttacttcc tataagtttc tcttgaattg ctgtactttt
      961 gcttgatatt tcaaaaatac tcaaagagtt tctcttctgt agaatatcat ttcttaatac
     1021 agatttttgg tcttgattgt ccaagttcat cgtattagtt gctgccaatc ttgtttatga
     1081 tgctggctgc gtaaacggta ttttttaata gcattgtgac agtcattggt cctactccac
     1141 ccggaacagg agtgatatat gctgcttttt ctgaaacgga tttaaaatca acatctccac
     1201 taatctttcc gtttattcta gtaataccga catcgaatat tattgctcca tccttgacca
     1261 tatttcctgt tagtacaaat ttttgtcgat ctcctactgc agtaatgata caatcaaagt
     1321 ttcttaattt gtcctccatt tctcttgatt ttgaatggaa aaatgttaca gttgcatcac
     1381 gattcattaa tagaattcca agaggttttc caactaggtt gcttctattt ataatggcta
     1441 catcaattcc cttaacatca attttgtaaa aatccaatag ttcaattata cccaagggtg
     1501 tacatggtat catcttggga gttcccccta acagaaggcc caaattgtaa gaggttaggc
     1561 catccacatc tttttcatgc cttaccatgt tggtgatgga tggttcaatt tgatccggta
     1621 atggaagttg aattagtatt ccatggacat tttcatcatg attcagttct ataattgtct
     1681 tggaaagttc ttcttgagta atgttttggg gtagtttaaa atctcgtgtt agaattccaa
     1741 cactacttgc tgcaattagt ttatttctaa catatgttgc agaggcttga ttatcgccaa
     1801 caagaacggt ggccaaacat ggcttaattc ctttactcac tagtgcggat acctcatttt
     1861 taacgatatt tttgatgtgt tgggatacca gcaatccgtc tattaatttg gccaaacatt
     1921 ttaggaaatc acaaagccat ttttttgctt tactgtagat tagcctattt ttacttcacc
     1981 cttaagtaac gattactttt ctaccttgaa ccgatatcct attttcagaa aaaatctgta
     2041 cgcaataagg atatagaata tgctcctgct caaggatcct atctgatagt gtttcacagg
     2101 tatcattatc caatactgct acatgcttct gagcaatgat tggtcctgaa tccaatccct
     2161 catcaacaaa atgaacagta catcctgtca cttttactcc ataatcaagc gctttttttt
     2221 gggaattaag tcccggaaaa gatggcaaaa gtgatggatg tatgttcaag attcgcatct
     2281 tgtacttatt tacaaattct ggacttaaga gtcgcatgta cccagccaaa cacacaagtc
     2341 cgttttctgg attgacatca tattcttgta atacttttac tatttcactg tcatactccc
     2401 aaccttttga attattggaa actacccttg ttggaatccc aaattttgag gcctttctaa
     2461 gaccttctgc ttcaggtttg cttgaaatta ttattttagg acagatgtct gcaatattgt
     2521 tttcttttac aaaatttaat attgattcca tgttgctacc tcttcccgaa atcaggattc
     2581 caagatttat catttgcacc ttatgtgtat ggttgagatt cttaaatgta atgaattgat
     2641 tctgagatga gaatggaggg atctttttcg tagagtcact ggattaatga tttcatttta
     2701 ccgatctaaa cgttactata aaatgttcca agtgtatatt gtttgttcac ataatgcatt
     2761 actgatgact gataaaccga ggtcaacgat agctatctat ctaataatgt gattatttag
     2821 tatgagcata tcggaattta tctaatttta tcaattcatg atatgaacca aactttgata
     2881 cttctgcagt atct
//
LOCUS       DASPFX010000004         3244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_138304, whole genome shotgun sequence.
ACCESSION   DASPFX010000004 DASPFX010000000
VERSION     DASPFX010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138304"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1581
                     /locus_tag="VD694_00055"
     CDS             <1..1581
                     /locus_tag="VD694_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis/translation initiation
                     ATPase RLI"
                     /protein_id="HXW11121.1"
                     /translation="IVNLAKEIGDHKIHQYGINSFRLYHIPLLKKGSVVGLLGRNGIG
                     KSTLLNILSGNIKPNFGNYDSELEWDNIISNFQGTELKPHFEKIASGNLRTSIKPQMV
                     QMIPKAFKGTARELLKKYDERGQIDLVTDQLSLHNSLDRSLSELSGGELQRLAVAIAV
                     NKDADYYFFDEPSSYNDIYQRLAVARTIKQLAEEDKSVMVVEHDLTLLDYLSDYIHIL
                     YGEPGAYGIVAPIQGTTVGINAFLDGFIPAENIRFREKSFKFDGSNKNEELIVDRPLT
                     KFSDLTKSFPSFKLNVSHGEIREGEIVGLVGANALGKTTFMKMIAGIEKTDSGQIDIQ
                     ASLSYKPQYLQNDYDGNIESLLNVAYQAPIEGSTMEQQIVVPMGIKKLYDKRVDTLSG
                     GELQKVAVCCSLIRPADIYALDEPSAFLDVEDRINIAKFLHRFVKSQGKSAIIVDHDM
                     QLIDLVADSLIIFSGNPGENGSAGSPIKKESGMNKFLENLSITYRRDESTGRPRINKL
                     GGRLDRAQKSSGDYYMRT"
     gene            1595..2437
                     /locus_tag="VD694_00060"
     CDS             1595..2437
                     /locus_tag="VD694_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HXW11122.1"
                     /translation="MTKMLKEVLQERLDNTELEELSSSFDIIGTIAIIKIPETLTSKR
                     KLIADALIDEIRPVKSVFCQVSAIEGDYRLRKLELISGESSPITVYKEHGCTFKVDVI
                     NTYFSPRLSTERLRIAKLTEPNEVIVNMFGGVGTFSIIISRYNKSAKIYSIDSNPMAI
                     DMCKQNIQINKLTGKVIPILGDAGHEIDKNLKGIATRVLMPLPEKARDFVDAAVRSLA
                     NGRGMVHYFCHVGADNKKDALLSGHNNTSESFSKFNHSIVNVRVVREVGPRFYQIVSD
                     VHLI"
     gene            complement(2667..3209)
                     /gene="rimI"
                     /locus_tag="VD694_00065"
     CDS             complement(2667..3209)
                     /gene="rimI"
                     /locus_tag="VD694_00065"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HXW11123.1"
                     /translation="MKPKVKIIKNRLFDNLQSCLRKNGNYIFYRCGAENLHSVIEINL
                     NSLPEHYTEYFFESILKELPESFIVAEFDGKIIGYVMCKIEFGFSNFRKLGFVKKGHV
                     VSIAILEEHRGRKVGTILMEEAINGLVSRRTEEVYLEVRVSNSAAIKMYEKLNFKVRS
                     RLKTYYRDGEDAFLMALELS"
BASE COUNT         1106 a          549 c          624 g          965 t
ORIGIN      
        1 attgtcaatc tggcaaaaga aattggagat cataaaatcc atcaatatgg tattaattca
       61 ttcaggctct accacattcc tttacttaaa aaaggttcag ttgtaggtct gttgggacga
      121 aatggcatag gaaagtccac acttttgaat attttatcag gaaatataaa accaaatttt
      181 ggtaactatg attctgagtt agaatgggat aatatcataa gcaattttca aggaacagaa
      241 ttaaaacctc attttgaaaa aattgcttct ggaaatttac gaacatcgat taagccccaa
      301 atggttcaaa tgatccccaa agcctttaag ggaacagcac gtgaactttt gaaaaagtat
      361 gacgaaaggg gtcaaattga tttggtaacc gatcaattat cacttcataa ttcacttgat
      421 cggtctctct ccgaattgag tggtggagaa ttgcagcgat tggcagttgc tatcgcagtc
      481 aataaagatg cggattatta tttcttcgat gaaccttcat catacaatga catctatcaa
      541 agattagctg ttgcgagaac tataaaacaa ctagcagagg aggacaagag tgtaatggta
      601 gtcgaacatg atttaactct tctggactat ctttcagact acatccacat attgtacggt
      661 gaaccaggcg catatggaat cgtagctcca atacaaggta ccacggttgg tattaacgcc
      721 tttttggatg gatttatccc agcagaaaat atcagattta gagaaaaatc attcaaattc
      781 gatggttcga acaagaatga agaactaata gtcgatagac cacttacaaa attttccgat
      841 ttgacaaagt catttccatc atttaaattg aatgtttctc atggagagat cagagagggg
      901 gagatagttg gattggtagg cgccaatgca ttgggaaaaa ccacattcat gaaaatgata
      961 gcaggtatag aaaagacaga tagcgggcaa atagatatcc aagccagttt atcgtacaag
     1021 ccacagtatc tgcaaaatga ttatgatggc aatatagaat ctctgttgaa tgtggcgtat
     1081 caagcaccga ttgaaggttc tactatggaa cagcagatcg ttgtgccaat gggtatcaaa
     1141 aaactttatg acaaaagagt tgataccttg agtggaggag aactacaaaa agttgctgtt
     1201 tgttgctcat taatacgacc agcagatatc tatgctttag atgagccatc agcatttttg
     1261 gatgtggagg atagaatcaa tattgcaaaa ttccttcaca gatttgttaa atctcagggt
     1321 aagtcagcaa taattgttga tcacgatatg caattgatag acttggtagc tgattcattg
     1381 attatttttt ctggaaatcc gggcgaaaat ggatctgctg gttccccaat aaaaaaagag
     1441 agtggaatga ataagtttct tgagaatctt tcaattacct acagacgaga tgaaagtact
     1501 ggccgtccaa ggataaacaa attgggtgga agattggaca gagcacaaaa gagctctgga
     1561 gactattata tgaggacttg aaattaatca aaatatgaca aagatgctaa aggaggtatt
     1621 gcaagaaaga ctcgataaca cagagcttga agaactgtca tcatcatttg atataatcgg
     1681 gactattgcg ataatcaaaa tcccagaaac attaacttcc aaaagaaaat tgatagcaga
     1741 tgcattgatt gatgaaatta gaccagtaaa atcagtattt tgtcaagtat cagcgattga
     1801 aggggattat agattgcgga aattagaatt aatatccgga gaaagtagtc caattaccgt
     1861 ttataaggaa catggatgta ctttcaaagt agatgtaatc aatacttact tttcaccaag
     1921 gctatcaacc gaacggttga ggatagcgaa attgacagaa ccaaatgaag tgattgtgaa
     1981 tatgttcgga ggggtaggaa cgttttctat tataatatcc cgctacaata agtcggcaaa
     2041 aatttattct attgattcaa atccaatggc cattgacatg tgtaagcaga atattcagat
     2101 aaataaattg acagggaagg tgattcctat tcttggtgac gcgggacatg agatagacaa
     2161 gaatcttaaa ggaattgcaa cacgagtatt gatgccctta ccggaaaagg caagagattt
     2221 tgtagatgcc gctgtacgtt cacttgcaaa cggcagaggc atggtacact atttttgtca
     2281 tgttggagct gacaataaga aagatgcatt gctgagcggt cacaacaata cctcagaatc
     2341 atttagtaaa tttaatcaca gtattgtaaa tgtaagagtc gtaagagagg tcggtcctag
     2401 gttttatcaa atcgtatctg acgtacattt aatttgatta tgattcattt atctggaggg
     2461 gctgaagaca ttgtgtaacc catccaaact aacactgtca taagtatccc cacaatgact
     2521 atcaaagtaa tttttatcac gagaatatcc caatgtgtaa acaacaagta tgaaaagaaa
     2581 atgaaaaata atgatgggac tataagtaaa actaatccaa ttattttgtt ctgtttcatt
     2641 ttatagattt caccacattc attcactcaa gacaattcta acgccattaa gaaggcatct
     2701 tcgccatctc tatagtaagt tttcagtctt gatctcacct taaaatttag tttctcatac
     2761 atcttaatgg ccgcggaatt gctgactctt acctccagat aaacctcttc cgttcgcctt
     2821 gacacaagcc catttattgc ttcttccatt agaatggtac caactttcct tcctcgatgt
     2881 tcttctaaaa tcgcaatgga aactacatgt ccttttttaa caaaacccaa tttcctgaaa
     2941 tttgaaaatc caaattcaat cttgcacatt acatatccaa tgatttttcc gtcaaattct
     3001 gctacaatga atgattctgg caattcttta aggattgatt caaaaaaata ctctgtataa
     3061 tgttcaggga gtgagtttag atttatctct attaccgaat gcaggttttc tgcaccacac
     3121 cggtagaaga tgtaatttcc attttttcgt aagcagctct gcaaattatc aaatagacga
     3181 tttttaatta ttttaacttt gggtttcatt taagcatagt ttgtactaat ttccagttta
     3241 gtca
//
LOCUS       DASPFX010000005         6205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_137829, whole genome shotgun sequence.
ACCESSION   DASPFX010000005 DASPFX010000000
VERSION     DASPFX010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6205
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137829"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            713..1363
                     /locus_tag="VD694_00070"
     CDS             713..1363
                     /locus_tag="VD694_00070"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0070007 - glutamic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family glutamic-type intramembrane
                     protease"
                     /protein_id="HXW11124.1"
                     /translation="MKKDVNPLSWMSAYRQTSIGYLVMMVLFYHGIGILVMLLGTLIV
                     EIVIIPGYEEPSRPIPLSIISVLSAGPIEETLFFGIPFYTLGNPFIVLAGGMLWATLH
                     ILNTDTFQINSLAFANWLFVIPSLFFSLRTWISGKGWFAIVSHSIWNLLFFNLACFVG
                     EIPYYSSCRILSSETYTDELGANITSLVISAALVIFTYLLYKRKVDSEEQKPLFSS"
     gene            complement(1431..2024)
                     /locus_tag="VD694_00075"
     CDS             complement(1431..2024)
                     /locus_tag="VD694_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11125.1"
                     /translation="MAIVVIIISVYALDLNNTMVINNNDRINKGIAYAHIFSDTENAV
                     TKNVDGTYQVSFLPYPAGLTVNDTSTKLNFSIMENNTDTPNLFTSLVITDKNTGEIVE
                     RTAYKFHEFGDVTYPYIFQNDGEYNVAIQAKINADPKYETTPLTAGFDVTVQYMQKMT
                     NTFQQIMLFYLTPVLAVIVGAIIYLEHRRGKAKGLLK"
     gene            complement(2307..2555)
                     /locus_tag="VD694_00080"
     CDS             complement(2307..2555)
                     /locus_tag="VD694_00080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11126.1"
                     /translation="MLPFPYDFISIAGLFVLMTYLRNRSEMKRFGGGGGVRNLFNSFS
                     SAMSDNQSRSLKYYCMSCGKEHKEIACPNCGSKMKRVG"
     gene            complement(2959..4665)
                     /locus_tag="VD694_00085"
     CDS             complement(2959..4665)
                     /locus_tag="VD694_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11127.1"
                     /translation="MNGSTNNDIHHGKGGNDPAHYTKRSLTSSTINPLAESPTWYEFH
                     KRLKLFPWWLNYNIGRAREAVLKDKIVQLGASMGLQDKWLNSIIRHAVSEFSKKGLGS
                     DYYGYHNIDHELEAAYFTLLAVNGLNDSTNKEKEKEVISRYEFHGNKFSIEDISYLFV
                     AALFHDYDPLKQFDKPHEDAVEWFIRNDEKITKFIEGVGINIDIVIAIIHRTAYPFKG
                     KIAEHAEKRMEELFAYAGIAEIDTKTRQHYKDLGWFLSVSERIAGYALGDFKHSMVLA
                     RTNAHALGWHPSRIYEESVKYFSVLKEERRMFEYVLQGIPLEYKKRFFDNMTTFKNIW
                     AREVDIRDSIRRNKIALVPVVEEIGEGDKNGNNNNTDTSLRNLIETIVNIFKELHVPV
                     DINDETRFRKSVRWSDTILVTLRVKEADKLDDEIVGYAKGAALENYHLRHGTHDENFG
                     KRNTAFMEWIGIKTGFWGENGGHILRMEFLREAKRRGYSYVSSYVHRDVIQHRINRGE
                     NIEYIQKYDPDKLDYYRADLSSHIYLETSSFPIQAMMKSIEMPSGEEIDTDIDKKYPI
                     VD"
     gene            complement(5485..5733)
                     /locus_tag="VD694_00090"
     CDS             complement(5485..5733)
                     /locus_tag="VD694_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11128.1"
                     /translation="MADKNLDKLAQYIMAALYPTYENVKKGLRSISYEPDNVSEDDIE
                     DFMDGMRLPGAKYAFMSMLLAGDYSFLNPSDNDPSKHR"
     gene            5808..>6205
                     /locus_tag="VD694_00095"
     CDS             5808..>6205
                     /locus_tag="VD694_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11129.1"
                     /translation="MKTLKNNNRKISVSSNTFLATVTTAGIISTLTIIFGLTTALASA
                     TTPGNNTTAITSSVEGEQEDVSSTTTTTNNASNALLGRLLSYNEGEDVESNVNPVNGT
                     YIVISYSGNRIILPLNATGVINATETGNVT"
BASE COUNT         1904 a         1154 c         1071 g         2076 t
ORIGIN      
        1 agactaacga actaaagaaa gaaaaaagag aaatgtaggc attcattcat ttcacccgcg
       61 tcttcaacta ctaacctaaa tatttgccca tcttcctagt cctccgattt taatgatctg
      121 attatggtta gaccagttag aagagattgc cgttacccaa gttgcaactt ctccagctgc
      181 tcctggtcct acctcacttc caggtggatt tatggttcga actctttttc atggcggagt
      241 catgggtcca gttaaggctt cagcttttgc aacaactttc ctggaatctt agcactccaa
      301 taagagagat cgttagcgat atcaaacttg atttaaattt cactatactg accttttttg
      361 atatgatatg ctagcacacc atcacaaaaa tcctacggat atccatggat atggaaatta
      421 gactaaagat ccgtaaggca ggaaacagct tgatgatcgc aaatagtcaa ggacttgaaa
      481 ctaaaagctg gtgatgatat gctatttgat attattgatt cgactatttc agtcaagaag
      541 gaaaagaggt aaaattggtt agggaagttc agagaggaag atgacatcgg atgtatgcta
      601 ggttaactaa gtatacttaa tggttctgat aatttttata taactttacc tcaaatgcgt
      661 ttgagttcaa ttgccatctt taccattatc cagtgaatct aaattttctg atatgaaaaa
      721 agacgtcaat ccgttatctt ggatgtcggc atatcgtcaa acttcaattg gttatcttgt
      781 tatgatggtg ctcttttacc atggaattgg tatcctagtt atgttattag gaactcttat
      841 agttgaaata gttattattc ctggctatga agaaccttcg cggccaattc ctctttcaat
      901 tatctcggta ttatctgctg ggcctattga ggaaacatta ttctttggta tacccttcta
      961 tactttagga aacccattca tagttttagc agggggtatg ctatgggcga ctttacacat
     1021 tttaaatact gatacatttc aaataaacag tcttgcattt gcaaattggt tattcgtaat
     1081 accatcgctt ttctttagcc tgagaacatg gatcagtgga aagggctggt ttgcaatagt
     1141 ctcgcattct atatggaatc tattattctt caatttggca tgcttcgtag gtgagattcc
     1201 ttattattct tcctgtagaa tactaagttc agaaacttat actgatgagc ttggagcaaa
     1261 tattactagt ttagtaatat ctgcagcatt agttatattc acatatcttt tatataagag
     1321 aaaagttgac agtgaagagc agaagcctct tttttcttcc taatacattt atgaagaaaa
     1381 tcagaattgt tggaaattgg cagcgctgtc agtaaatcaa taggagatat tcattttagt
     1441 aagccttttg ccttccctct tctatgttct aaatagataa tggctccaac tattacagct
     1501 aatactggag taaggtaaaa taacattatc tgctgaaagg tatttgtcat cttttgcata
     1561 tattgtacag tgacatcaaa gcccgctgtt aagggggtag tctcatattt tggatccgca
     1621 tttatttttg cttgaattgc tacattgtac tcaccatcat tttgaaatat atatggatat
     1681 gtaacatctc caaattcatg aaacttgtag gcggttcgtt ctactatctc ccctgtattt
     1741 ttgtccgtta taacaagtga tgtaaataaa ttgggagtat cagtattatt ttccatgata
     1801 ctaaaattca gttttgtaga agtatcgttt actgttagcc cagcaggata tggtagaaac
     1861 gaaacttgat acgtgccatc aacatttttt gtgacagcat tttctgtgtc gctaaagata
     1921 tgagcatatg caatgccttt gttaattcta tcattattgt taataaccat ggtattattg
     1981 agatcaagtg cataaacgga aattatgata acaacaatag ccacgtgaaa tcgaccagaa
     2041 cataataaat tcagcaaact aaattgtgta taaatgccat gaagccattt atttaagcct
     2101 tattattcgg attattgttt tgcttgtatg gcgtgtatta ttttactatg agtttgccaa
     2161 gggatatgat aaaattgaaa ttagcaggtt caaaagactg ctctcgggac gggtgaggaa
     2221 taatatgtga cctctttgat agctcagctt gaagaaaaat tacccagcta tcaatttttt
     2281 tccttctcta tgtggctgag actacactat cctacccttt tcatttttga gccacaatta
     2341 ggacatgcaa tttctttatg ttcttttccg cagctcatgc aatagtattt cagtgatctg
     2401 ctttgattat cagacatagc ggatgaaaac gaattgaaga ggttccttac tccgccccca
     2461 cctccaaacc ttttcatttc gctcctgttt ctaaggtagg tcatcaaaac aaaaagaccg
     2521 gctatagata tgaaatcgta tgggaaaggg agcaaggaaa ctaaaataat accaaccccc
     2581 atgaaaatta atagccactt tagcctatga ataataaagc gcttggtttc gttatcccag
     2641 ttcataggat tatttaatat tgcacatgga ctagataagg atatcaggca aatatttcct
     2701 aatggatttg gggtaaatat tcagtccaag tgagataaac caaagtttag atgtaagtat
     2761 atacttatct tcttgtcgtg tattggcaaa atcagtagga aaactaccaa attctgcttg
     2821 tccacgatca aagatccggt acgactacgg cctatcgttg tgtattttga tatcaatatg
     2881 taagctcctt gtccaaacga tcttgatatg agttagtttt ttgcttgata tactaagagc
     2941 aatttatacc tgggaagctt aatcgacaat tgggtatttt ttatctatgt ccgtatctat
     3001 ttcttctccg ctgggcatct ctatagactt catcattgct tgtattggaa atgaagaagt
     3061 ttctaaatag atatgactac ttaagtcggc tctatagtaa tcaagtttgt caggatcgta
     3121 tttttgtata tattcaatat tttcccctct gtttattctg tgctgtatta catctctgtg
     3181 aacataacta gatacataag aatagcctcg acgttttgcc tccctaagaa actccattct
     3241 gagaatatgg cctccgtttt cgccccaaaa acctgttttg atgccaatcc attccataaa
     3301 agcggtattc ctttttccaa aattctcatc atgtgtacca tgtcttagat gataattctc
     3361 tagtgctgcg ccttttgcat aaccaacaat ttcatcgtct aatttatctg cctccttaac
     3421 ccttagggtt actaatattg tatcactcca tctaacagat tttctaaatc gagtttcatc
     3481 gttaatatcc acaggaacat gtagttcttt gaatatattt acaatagtct ctatcaaatt
     3541 acgcaatgag gtatcagtgt tattgttatt gccatttttg tccccttcac ctatttcttc
     3601 taccacaggt actagagcaa ttttgtttct tctaattgaa tctctaatat ctacttctct
     3661 agcccatata ttcttgaaag tagtcatatt atcaaagaat ctctttttat attcaagtgg
     3721 aatgccttgt aatacgtatt caaacattct tctctcttct tttaggacac taaaatactt
     3781 gacagattct tcgtatattc gagaaggatg ccatccaaga gcatgagcat tagtacgagc
     3841 aaggaccata gaatgcttaa aatctcctag agcatatcct gcaatgcgtt ctgagacaga
     3901 caaaaaccac ccaaggtctt tgtaatgctg tcttgtttta gtatcaattt cagcgatccc
     3961 tgcatatgca aataactctt ccattctctt ttctgcatgc tctgctattt tccccttaaa
     4021 tggataagct gttctgtgta ttatagcaat tactatgtca atattaattc ctacaccttc
     4081 tatgaacttt gttatttttt catcatttct tatgaaccat tcaacagcgt cttcatgggg
     4141 cttgtcaaat tgttttaagg ggtcataatc gtggaaaagg gcagctacaa atagatagct
     4201 tatatcctct atgctgaact tgttgccatg gaactcgtat cgagatatca cttctttttc
     4261 tttttcttta ttagtgctat cattgagtcc attgaccgct aataaggtaa aataggcagc
     4321 ctctaactcg tgatctatat tatgataacc ataataatca gatcctaatc ctttctttga
     4381 gaactccgac accgcatgtc ttattatact gttcagccat ttatcttgca aacccatgga
     4441 agctcctaac tgaacaattt tatcttttaa gacagcctcc ctggctctgc caatattata
     4501 atttaaccac caagggaaca atttcaggcg tttgtgaaat tcataccaag ttggagattc
     4561 ggctagagga ttaattgttg atgaggtcaa tgacctttta gtataatgag caggatcgtt
     4621 tccacctttt ccatgatgga tgtcattatt ggtagaaccg ttcaaagata ttaggacata
     4681 acgtttatct tatattagta ttaccaaaag gttttgaaat ttttatcata tgtgggtaac
     4741 atttgattat ttatagatag ttaggccata gcaccttata ggaaattcat agccttattt
     4801 atgaaagcgt ataccaaatt atcttgaatg aggtttcaga attttctatt agaaggggga
     4861 ggattgcaac acattgcatg tggtaagatg caaacattca atctacaaga ctttggctta
     4921 ttctgaataa gaaagaataa tgatactcag actatgcaaa aaacaatcga gaattttaca
     4981 attaactaaa aaacggatat tatgcataga agacagttaa aaaataattg catctaaaga
     5041 aagatatgga ggacgacaga tattaagtgg atgtaatact gttaaattca ttcattaatt
     5101 taacaagagg aaaagtcatt aaaagagatt taggactcag ccttcttaac cgctctataa
     5161 caatcgtcac aatatgactt tcctttatag agatattctg cttcatcgcc taggagagta
     5221 tggtcacatt cgacgcattt atgaagcata tcaagatctg ctcggttaaa ctaaaggacg
     5281 caccaaggtt ataatcttta tattatattt cacagaatat tttttgggac ctaattatcc
     5341 taggtcaaat gtccagccaa acatcccgca ggtaaggtcc tagactcaac agcgatccca
     5401 taaacctcgg tttctaccaa aaccttgttg agtctcctgc ggtaaaatct ctaaatatga
     5461 tagttaaaat gttgataacg agtgttatct gtgtttagag ggatcgttat cggacgggtt
     5521 caaaaatgaa tagtctcccg caaggagcat ggacataaac gcatatttcg caccgggtaa
     5581 tctcattcca tccataaagt cttctatgtc atcctctgac acattatctg gctcataact
     5641 tatgcttctg agaccctttt tcacattctc atatgtaggg tataaagcgg ccataatgta
     5701 ttgggccaat ttatctaggt ttttatcagc cacttatggt gttattctaa tccttcttat
     5761 cttatataaa gagatatact tgtgaagaaa taatagacgc gcgcaaaatg aaaacgctga
     5821 agaataataa tagaaaaata tctgtatcaa gcaatacctt tcttgcaaca gtgacaacag
     5881 caggtataat ctccacactg acaataatat ttggattaac cactgctcta gcatcagcca
     5941 ctacacctgg caataacact actgcaatta cttcgtcagt agaaggagag caagaagatg
     6001 tgagcagcac gactactact actaacaatg cttcaaatgc tcttttgggt cgtcttctct
     6061 catataatga aggtgaagat gtagaatcaa acgtgaaccc agtaaatgga acatatattg
     6121 taatctcata ttctggcaac agaataatat tgcctctgaa tgctacaggt gttattaatg
     6181 cgactgagac aggaaacgtc acaat
//
LOCUS       DASPFX010000006         3457 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1420714, whole genome shotgun sequence.
ACCESSION   DASPFX010000006 DASPFX010000000
VERSION     DASPFX010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3457
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1420714"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VD694_00100"
     CDS             <1..226
                     /locus_tag="VD694_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11130.1"
                     /translation="KGSKLIVLSNSLIDDDKSKILEEANAAKVPTLQYAGNSVQLGRL
                     CNKTFRISTISLKIGNDNDIQELLTEFGNK"
     gene            352..813
                     /locus_tag="VD694_00105"
     CDS             352..813
                     /locus_tag="VD694_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusA-like transcription termination
                     signal-binding factor"
                     /protein_id="HXW11131.1"
                     /translation="MTEKIKLTSGELRLMSLFQNITGAVARDCVVDEKMDRVIFVVNK
                     GQMGLAIGKGGATIRQLQGIVTKRVELVEYSEDPSAFLGNVLNSDMINEIKINNRFDG
                     SRQAVVVVDPKKKGIVVGKEGRNAEKARILAKRYFQISNVMIVSEDHAQIN"
     gene            827..1264
                     /locus_tag="VD694_00110"
     CDS             827..1264
                     /locus_tag="VD694_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HXW11132.1"
                     /translation="MAKSPLGLFSGRVLKSKRKRMRWSNKYYKRRMLMLDKKANPLEG
                     APQARAIVLEKVGIESKQPNSAVRKCVRVQLIKNGKSITAFLPRDGALNYIDEHDEVM
                     LEGIGGSMGGAMGDIPGVRWQVFKVNGVSLIELVYGRKEKPRR"
     gene            1270..1872
                     /locus_tag="VD694_00115"
     CDS             1270..1872
                     /locus_tag="VD694_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HXW11133.1"
                     /translation="MVTKENNMLLFNKWSTGEIEIQDSGLKNVIALDPAIIPISFGRH
                     EHQRLKKADVHIIERLVNKLMHFGKKYAKNTGRMGGKKGRMIKTVKTALDLIHYETGK
                     NPVELLIRAIENAAPNEDTTRIVYGGVVYHVSVDVAPLRRIDLALRFIAEGVRESTYS
                     NPKTIEEALAKEIITASTNSMESHSVKKKNEQERIAMSSR"
     gene            1993..3129
                     /locus_tag="VD694_00120"
     CDS             1993..3129
                     /locus_tag="VD694_00120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11134.1"
                     /translation="MSAKENKIFSKVSLWSTNSGKRIIKQVLLQEKGYKQYSKYRAQS
                     EREFTEFTKRFLLSLHEKLISDPNPKATMKKFIDEIESNELSLDDSKIDSVRERLSKP
                     DVLADRVQRILNSNFVKMTFPVFSALIDSASDFYKEPISKEVRTSIVDGHVIAIDLSE
                     PMDRIMDADEDIEFLDDYKLMNPYILEIARQKISAGGDSILKAFEDGFKDARIGQYID
                     ARLKLKPESISDENMIGCYKKYRAVMGTAGRNMAFNMPPLNDIFHLGMAKAAECVGCG
                     NEMEDAIVNGGIKIPSWPLYYSIVTNNVEKAFELTLSKSEIYLDEAKIALDMLPEEVN
                     IKPFLKFLFLTVSHYNQYWFNVMKRRDLFPYFQKNLSISIKNSK"
     gene            3164..>3457
                     /locus_tag="VD694_00125"
     CDS             3164..>3457
                     /locus_tag="VD694_00125"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW11135.1"
                     /translation="MIHPKISDFVGNESSRKKVVEWLVKWSDGTKPLLLVGPPGVGKT
                     SFIHALSREFDIDLVELNASDTRNKNLLAQVIFPIFSNSSLTGKNYLLFLDEID"
BASE COUNT         1242 a          512 c          736 g          967 t
ORIGIN      
        1 taaaggctcg aaacttatag ttctttcaaa ttcattgatt gatgatgata aatcaaaaat
       61 cttggaggaa gcaaacgctg caaaggtacc aacgttacaa tatgctggta actcagtaca
      121 acttggaaga ttgtgcaata aaacatttag aataagtact atatcactga aaattggcaa
      181 tgataatgat attcaggaat tactaactga atttggaaac aaatgatgta tatggtaaat
      241 tgctgttacg ataaagaaat ttttcaattc gaattttaat aaatgactgc aaaatggaaa
      301 accaaattct aaactcatca aacagcccaa taatggaggc caagaattaa attgactgaa
      361 aaaatcaaac taacttctgg tgaactacga ctaatgtctt tatttcagaa tataacagga
      421 gcagtggcac gtgattgcgt tgttgacgaa aaaatggata gggtaatttt cgttgtaaat
      481 aagggacaga tgggtttggc tatcggtaag ggaggcgcaa cgataaggca gttacaagga
      541 attgttacga agagagttga attagttgaa tattcagaag atccttctgc ttttttgggg
      601 aatgtactta attctgatat gattaatgag ataaagatta ataatagatt cgatggttca
      661 agacaagctg tcgtggtagt ggatccaaaa aagaaaggca tagtagtggg taaagaggga
      721 cgtaatgcgg agaaggcaag aatcttggca aaaagatact ttcagatttc aaatgttatg
      781 atagtgagtg aagatcatgc acagattaat tgaggttagt tggtaaatgg caaaatcacc
      841 attaggacta ttttctggta gagttttaaa atcaaagaga aagaggatga ggtggtcgaa
      901 caagtattac aagaggcgaa tgctcatgtt agacaaaaag gcaaacccct tagaaggggc
      961 tccacaagca agggctatag ttcttgaaaa agttggaatt gaatcaaaac aaccaaactc
     1021 tgcggttaga aagtgtgtta gagttcagtt gattaagaat ggaaaatcaa ttactgcatt
     1081 ccttccgcgt gacggtgccc taaattacat agatgagcat gacgaagtta tgctagaagg
     1141 aattggagga tcaatgggag gtgctatggg agatattccc ggagtcagat ggcaggtgtt
     1201 caaagtaaac ggagtatcac ttatagaact ggtatacgga agaaaggaga agccaaggag
     1261 atgaattgaa tggttacaaa agaaaataat atgttgttat ttaacaaatg gagcacgggc
     1321 gaaattgaaa tccaagattc cggcctgaaa aatgtcattg cattagatcc ggccataata
     1381 ccgattagtt ttggaagaca tgagcatcaa cgattaaaga aagctgatgt ccatatcatt
     1441 gaaagattag taaacaagtt gatgcatttt ggcaaaaagt acgcaaaaaa tactggtaga
     1501 atgggtggca aaaagggcag gatgataaaa accgtaaaaa ctgcacttga cctaatacat
     1561 tatgaaactg gcaaaaatcc cgtagaacta ttaatcagag cgattgaaaa tgctgcacct
     1621 aatgaagata ctacaagaat cgtctatggt ggtgttgttt atcacgtttc tgttgacgtg
     1681 gcacctttaa ggcgcatcga tctggcactc cggtttattg cagaaggagt aagggaatca
     1741 acctactcaa atccaaagac tattgaagaa gctctggcaa aagagattat tacagcctca
     1801 actaattcca tggaaagcca ttctgtaaag aagaaaaatg aacaagaaag aatagccatg
     1861 tcctcaaggt aatagtgcct atctaccatt tcttcacata cgattatttc tatttttcaa
     1921 tcatgtcttg ttcaagatac tttactaatt ctgaaagtta aataacgacg gatgattctg
     1981 aaagaattgt aaatgagcgc taaagaaaat aaaatttttt caaaggtttc attatggagt
     2041 actaactcgg gtaagagaat aataaaacaa gtattattgc aggaaaaagg ctataaacaa
     2101 tatagcaaat accgggctca atctgaaagg gaattcaccg agtttacaaa gaggtttctg
     2161 ttatcactgc atgaaaaact catttcagat ccaaatccga aagctaccat gaaaaaattt
     2221 atcgacgaaa ttgagtctaa tgaattgtca ttggatgatt caaaaattga ttcagtaagg
     2281 gagaggctct caaaaccgga cgtgctagca gatagggtac agagaatatt aaattccaac
     2341 tttgtaaaaa tgacttttcc agtgttttct gctttgattg atagtgcctc tgatttctat
     2401 aaagaaccga tctctaaaga ggtaaggaca tccattgttg atggtcatgt aattgctatc
     2461 gaccttagtg aacctatgga tagaataatg gatgctgatg aagatattga attcttggat
     2521 gattacaaac ttatgaaccc atatatcctt gaaattgcgc gacaaaagat ttcggctggt
     2581 ggtgattcca tactaaaggc ctttgaagat ggattcaaag atgcaagaat tggacagtac
     2641 attgatgcaa ggctaaagct aaaacctgaa tctataagcg atgaaaatat gataggatgc
     2701 tataaaaaat atcgtgcggt catgggaact gccggtcgta acatggcgtt taatatgcca
     2761 cctctcaatg atattttcca tttaggaatg gccaaggcag ctgaatgtgt tggatgtgga
     2821 aatgaaatgg aggacgcaat agtaaatgga ggaataaaaa ttccatcatg gcccctgtac
     2881 tactcgatag ttacaaataa tgttgaaaag gcatttgaac ttacattgag caaaagtgaa
     2941 atctatttgg atgaagccaa gattgcactt gatatgttac cagaggaggt gaatataaaa
     3001 ccatttttga aattcttatt cctgacggta agtcattata atcaatattg gtttaacgta
     3061 atgaagcgtc gagatttgtt tccatatttt caaaagaatc tctcaattag tatcaaaaat
     3121 tccaaatgaa tcgtattgag tactttataa tatagatgat actttgatcc acccaaaaat
     3181 atccgatttt gttggcaatg aaagctccag gaagaaagtg gtagaatggt tggtaaaatg
     3241 gtctgatggc acaaagccac tgttactggt tggaccacct ggtgtaggaa aaacatcctt
     3301 tattcatgct ctaagtcgag aatttgatat tgatcttgtt gaattgaatg caagtgatac
     3361 tagaaataag aacctgcttg cgcaagtcat ttttccaata ttttcaaatt caagtttaac
     3421 tggaaaaaac tatcttcttt ttcttgacga gatagac
//
LOCUS       DASPFX010000007         4053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1846792, whole genome shotgun sequence.
ACCESSION   DASPFX010000007 DASPFX010000000
VERSION     DASPFX010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1846792"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(206..1501)
                     /locus_tag="VD694_00130"
     CDS             complement(206..1501)
                     /locus_tag="VD694_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HXW11136.1"
                     /translation="MFGQNAYFFALVLSFILIFSSFNYPFLNVPVSAQTPGTHISQEQ
                     YDKIKNCTTELSKIPTPVEYLTYFNCGHVSKDESGRTIRQFTLIVEENQKIPVTYEGH
                     ILDAWTFNGTIPGPTIRVTEGDLVRIRVINSNENSNPHSLHTHSIHYAKNDGVSMGGY
                     PGGAISPGRSFTYEFVAQPYGVYPYHCHVDPIADHINRGLYGMMIIDPLEPRPQMMEM
                     AMLMNGYDLDLDLEGPTKIPPAALFQTTEDSNMTEGMADNETSTEANMTEGMADNETS
                     TEANMTLVSSDMTNADEQDDSGDDESSDEDSGDRVNEIYTVNGKAFDYMMNPIVLQTG
                     KPYRIYLVNMLEFDLVNSFHLHGAMFNYYTAGTDETADYNTDIVTLSQGDRGIMEFTY
                     AYPGTYMFHAHQTEFTDLGWMGLFDVRGNAVEPTSHDTT"
     gene            1911..2351
                     /locus_tag="VD694_00135"
     CDS             1911..2351
                     /locus_tag="VD694_00135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11137.1"
                     /translation="MEKSNGIKVSVIVVLFSLIFCSSVIIQISFAEEIELKSVGRGDV
                     SCQDGKEIKNVRINFFVSHDKGTSFAEWNIDHEKFGSAGGIITSIQASSESFSLKGFE
                     AFDSICDNESPSDIKLSGHCGQGTVKLVSDNGNKGTFTSNVKCG"
     gene            2457..2657
                     /locus_tag="VD694_00140"
     CDS             2457..2657
                     /locus_tag="VD694_00140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11138.1"
                     /translation="MKISSIRKWLPIVGLAALIPLILSLTLGVPIIQALVAAGLTVLL
                     VLSGFFFRSFGRDRRPSDYQNP"
     gene            complement(2677..3033)
                     /locus_tag="VD694_00145"
     CDS             complement(2677..3033)
                     /locus_tag="VD694_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW11139.1"
                     /translation="MVPLNYFKFFHNSEMSKTVCKNENNRGKIQIMADIVDLCKAGIR
                     KTHIMYKGNLSYEQINRYLYELLEKELITQNLDDGVLTYRATEKGRSFLQCYHMMLSI
                     LDENSIRVESSIAKIA"
     gene            3188..>4053
                     /locus_tag="VD694_00150"
     CDS             3188..>4053
                     /locus_tag="VD694_00150"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HXW11140.1"
                     /translation="MKKKFRTEIVKLDEKRPNQSIISNASKLIRSGEIIAFPTETVYG
                     LGGNALDPSSVSKIFEIKGRPPDNPLIVHVADMRMLEPLVIQIPPKAHSIIKKFWPGP
                     ITLVLKKSKIVPKITTGGLNTVAVRMPKNNVARALIRKSGLPIAAPSANISGRPSPTT
                     AIHVKDDLAGKIKLILDGGSTRIGIESTVIDMTRRIPVILRPGGISKESIENEIGKVC
                     FHDSLLGNEGREMTTHRSPGMKYQHYSPKAKVMLVEGPENVVKIKIMQLSEKLEAEGK
                     KVSIMTSSKSLEV"
BASE COUNT         1321 a          749 c          721 g         1262 t
ORIGIN      
        1 aaacaatgtt cagatatttt atttttctta attaaattta cacacaagta aaatgagcca
       61 aaagactttc actcattgtc attttcccat catgattaac atcgcttgtt ggtaacattt
      121 ctgagaatca attctttcgg tcattgacaa taacctattt gactacccca gtaatatgat
      181 atctacaaaa ataatttctt cttatttaag tagtatcatg tgatgtaggt tcaactgcat
      241 ttcctcttac atcaaataac cccatccaac ccaagtccgt aaactccgtt tgatgagcgt
      301 ggaacatata cgttccagga taagcgtacg taaattccat aatcccacgg tctccttgcg
      361 atagcgttac tatatcagtg ttgtaatctg cagtttcatc tgtaccggca gtgtaatagt
      421 taaacatcgc tccatgcaaa tgaaatgaat tgaccaagtc aaattcaagc atgtttacta
      481 agtaaatgcg gtatggtttg cccgtctgta atacgatagg attcatcata tagtcaaatg
      541 cctttccatt gactgtgtaa atttcattaa ctctatcccc actatcctca tctgatgatt
      601 cgtcatctcc actgtcatct tgttcatctg catttgtcat gtcagacgaa accaatgtca
      661 tgttagcctc agtgctagtt tcgttatctg ccatgccctc tgtcatgtta gcctcagtgc
      721 tagtttcgtt atctgccatg ccctctgtca tgttagaatc ttcagtagtt tggaataagg
      781 cagctggggg tatcttagtt ggtccttcca aatcaagatc caagtcataa ccattcatga
      841 gcatggccat ctccatcatt tgcggcctgg gttctaatgg atctattatc atcattccat
      901 ataatcccct gttgatgtga tcggcaatag gatctacatg gcaatgatat ggatagactc
      961 cgtatggctg tgcgacaaat tcataagtga aacttcttcc gggtgaaata gctcccccag
     1021 gataaccacc cattgaaaca ccatcattct tagcgtagtg aatagaatga gtgtgaagtg
     1081 aatgtggatt tgaattttca ttactgttaa tcactctaat gcggacaaga tctccttctg
     1141 tgacccttat tgtaggtcca ggaattgtac cattaaatgt ccatgcgtct agaatatgac
     1201 cttcataagt cacaggtatc ttttgatttt cttcaacgat tagtgtaaat tgtcttatcg
     1261 tccttccact ttcgtccttt gagacatgac cgcagttgaa gtatgtaaga tattctaccg
     1321 gcgtaggtat tttactcaat tcagtagtac agttcttaat tttatcatat tgttcttgag
     1381 aaatgtgagt tccaggtgtc tgggcagata ctggaacatt caaaaaagga taattgaatg
     1441 acgaaaatat caaaataaat gacaaaacca atgcaaaaaa atatgcattt tgcccaaaca
     1501 caatcaatga aagatattct ttgttataaa tatgttaatc attatcagaa ttctacgaag
     1561 aatatgaaca gacaacaaat gaattgaata tcttctcact cccaattagg aatttcaaca
     1621 atagtagtag caacaataga aaatcctatt tccaatatgg ttaccaaata acgcagcaga
     1681 gatttgaaat gttctgggaa ctggagtcaa ggaaagacct tccttgaaaa aataaaataa
     1741 agatcatttt ttttaaaacc gtgcagacaa atggctaatc acaatttgaa aagcggtgat
     1801 gatttctaaa taccaaaaat gggaaaccaa atattagtaa aagataacag aacatgattc
     1861 agaattttct tacctagtcc ttaaaagata taatcctata actaaatcca atggaaaagt
     1921 caaatggaat aaaagtaagt gtaattgtag tattgttcag tctgatcttt tgctcatccg
     1981 ttattattca gatatcattt gcagaagaga ttgaactaaa aagtgttgga aggggagatg
     2041 tatcctgcca agacggcaaa gaaataaaaa atgtgagaat aaattttttc gtgtcccatg
     2101 ataagggaac gtcgtttgct gaatggaata tcgatcatga aaaatttgga tcagctgggg
     2161 ggatcatcac tagcattcaa gcttcatcag agagcttttc attgaagggc tttgaagcct
     2221 ttgatagcat atgtgataat gaatcaccat ctgacattaa actttcagga cattgcggac
     2281 aaggaacagt aaaattagta tctgataatg gtaacaaagg tacttttact tctaatgtca
     2341 aatgcggata ataagaagca gaatcatgta aagttcaaat aagatctaaa ccgactgaga
     2401 tccttatcaa gatggttaaa agataataaa tagaccgtca taatcaacaa tcgaacttga
     2461 aaatttcttc tataaggaaa tggctgccga tagttggtct agcagcctta atccccctca
     2521 ttctcagcct tactttagga gttcctataa tacaagcgct ggtagctgct ggtcttactg
     2581 tcttgcttgt gcttagtgga tttttcttta gatcatttgg tagggatagg agaccttctg
     2641 attatcaaaa tccataggta aatatgaata aggtttctaa gctatttttg cgatagaaga
     2701 ttctactcgg atcgaatttt cgtctaaaat actcagcatc atatggtagc attgcagaaa
     2761 tgatctacct ttttcggttg cgcgatatgt tagcacaccg tcatctagat tctgcgttat
     2821 aagctctttt tccaaaagct catacaagta cctattgatt tgctcatagc tcaagtttcc
     2881 tttgtacata atgtgggttt ttcttattcc tgctttacac agatctacta tgtctgccat
     2941 aatctggatt tttcccctat tattttcatt cttacagaca gttttgctca tttcgctgtt
     3001 atgaaagaat ttaaagtaat taaggggaac catgaaattt cacgctggaa cgaccgttcc
     3061 atctcgcaat tactataaga aatactcata ttgaattttc gttaaactgt gtaaatcata
     3121 atttcaattt ttcaattgaa tttacgaatc tatataataa tactatgaat aactaccatt
     3181 cccattcatg aagaaaaagt tcaggactga aattgtgaag ctggatgaaa aaaggcccaa
     3241 ccaaagtatc attagcaacg cctcaaaatt aattcgcagt ggcgaaatta ttgctttccc
     3301 aacagaaaca gtatatggac ttggaggaaa tgcactggat ccatcatccg tatcaaaaat
     3361 ttttgaaatc aaaggaaggc ctcctgataa cccgttaatt gtacatgttg cagatatgag
     3421 aatgcttgaa ccccttgtta ttcaaattcc cccaaaggct catagcatta tcaaaaaatt
     3481 ttggcccggt cccattaccc ttgttcttaa aaaatcaaag atagtgccta aaattactac
     3541 tggaggctta aacacagtgg cagtccgtat gccaaagaat aacgttgccc gggcactcat
     3601 aagaaaatct ggacttccaa ttgctgcccc atctgcaaat atttctggaa gacctagtcc
     3661 tacgactgcc attcatgtaa aagatgatct tgctggaaaa ataaaattaa ttttggatgg
     3721 tggaagtaca agaattggta ttgaatcaac agtaattgat atgactcgac gcattccagt
     3781 aatattaaga cctggtggaa tttcgaaaga atcaatagaa aatgaaatag gtaaagtatg
     3841 ctttcatgat tctcttcttg gtaacgaagg cagggagatg actacgcaca ggtctccggg
     3901 catgaaatat caacattatt caccaaaggc aaaagtaatg ttagtggaag gtccagaaaa
     3961 tgttgttaag attaagataa tgcaactgag tgaaaaatta gaggctgaag gtaagaaagt
     4021 atctattatg acttccagca aatctttaga agt
//
LOCUS       DASPFX010000008         2172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_422351, whole genome shotgun sequence.
ACCESSION   DASPFX010000008 DASPFX010000000
VERSION     DASPFX010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422351"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1196
                     /locus_tag="VD694_00155"
     CDS             <1..1196
                     /locus_tag="VD694_00155"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HXW11141.1"
                     /translation="AFSPDHETSISFDGEGYILNRKILPQKQLNDALNVGIEIKYNLA
                     LRNVMTENDRVIGIEGEDLQTKSAFKKTCKVVVDCTGVTSVLRTNLPITTHIQRKINR
                     DDLEATGRYIYNFENQSEDNTYFDPDYCLIHLDQNIAPGGYAWVFPKGKNKVNIGLGV
                     QQKAMEEHNRKQGERKDLKTKIDDYVKLNPVIKNPQIADGESDDGNSWGTWQVSVRRQ
                     NDCLAANGYILVGDSAWMPKPLDAGGIGPAIIAATIAGKTVVESIQANDFSEESLWKY
                     NLEFVEAYGYKTAGLEVFRRLLQKLSNDQINYGMKHFLSKLDVDNITNGEHPEFGMVD
                     KLNMFIHGALNKRLAEDLKTTAEVNKKLVSHYHNYPTNPNDFPEWQKSLSKTMSDAFI
                     KLGCA"
     gene            complement(1210..1848)
                     /locus_tag="VD694_00160"
     CDS             complement(1210..1848)
                     /locus_tag="VD694_00160"
                     /inference="COORDINATES: protein motif:HMM:NF014099.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HXW11142.1"
                     /translation="MMLSNVQTDVDKINRKFKDVEERRNAIIKGTRDATILCSKAIVS
                     LHSHKKKESIEYIEKAKKLLEQFKELGKDDLQKYLYIAEQEFVEAFCLFSISENSVIP
                     SMKALEVSDVSYVMGLLDCIGEIKRMIIDRIRSEGTSNVNALFELMDKIYGTIYPLAV
                     YDNLMPGLRKKLDVSRILIENVRAILAEEQRRTKMIEMLEHFEEKIISSKKF"
     gene            1985..>2172
                     /locus_tag="VD694_00165"
     CDS             1985..>2172
                     /locus_tag="VD694_00165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11143.1"
                     /translation="MYQTQTYQTLVPANKRKMQYELAQVYTRLNRIRRNRGYSFEHIL
                     VQKLNGNVWNARRLGGSSA"
BASE COUNT          729 a          396 c          415 g          632 t
ORIGIN      
        1 tagcattctc accagatcat gaaacttcaa tatcatttga tggtgaaggg tatattttga
       61 ataggaagat cctgccacag aagcaactaa atgatgcact taatgttggt attgaaatca
      121 agtataactt ggcattaaga aatgtgatga cggagaatga tagagtaata ggcatagaag
      181 gcgaagacct gcagactaaa tccgccttca aaaaaacttg taaagtggta gttgactgca
      241 caggtgtgac atctgtcctg cgcacaaatc tcccaattac aacccatatt caaaggaaaa
      301 tcaatagaga tgatttggag gcgactggca gatatattta caattttgaa aaccaaagtg
      361 aagataacac atactttgat cctgattact gtcttattca tctagatcag aacatagctc
      421 ctggtggata cgcgtgggta ttcccaaagg ggaagaataa agtgaacatt ggtcttggag
      481 ttcaacagaa agcaatggag gaacataata gaaaacaggg cgaacggaag gacttgaaga
      541 caaagattga tgattatgtc aaattgaatc cggtaataaa aaatccgcag atagcagacg
      601 gcgaatctga tgatggtaac agttggggaa catggcaggt ttcagtgaga cgccagaatg
      661 attgtctggc agcaaatgga tatatacttg taggggattc agcatggatg ccaaagcccc
      721 ttgatgcagg aggaattgga ccagccatta ttgcagcaac catcgcagga aaaacagtag
      781 tggaatcaat tcaagccaac gatttttccg aagaatcact ctggaagtac aatttggaat
      841 ttgttgaagc gtatgggtac aagacagcag gtctcgaggt ttttaggaga ctacttcaaa
      901 aactatcaaa tgatcaaatt aattacggaa tgaaacattt tctctcaaaa ttggatgtag
      961 ataatattac aaatggagag catcctgaat ttggcatggt ggacaagctc aacatgttta
     1021 ttcatggagc cctgaataag agactcgctg aagatttgaa aaccaccgca gaagtgaaca
     1081 agaaattggt tagtcattac cataattatc caacgaatcc aaacgacttt ccggaatggc
     1141 aaaaaagttt gagcaagacc atgtctgatg cattcattaa gttgggatgc gcatgaccgt
     1201 tactatcgct tagaattttt tgctagatat tatcttttct tcaaaatgtt ctagcatctc
     1261 aatcattttt gttcttcttt gttcctcggc gagtattgct ctaacatttt caattagaat
     1321 tcttgaaaca tccaatttct tcctcagacc gggcatcaag ttatcataga cagccagagg
     1381 ataaatagtg ccataaattt tatccatcaa ctcaaataaa gcatttacat ttgaagtacc
     1441 ttcagaccta atcctgtcta ttatcattct cttaatttct ccaatacagt ccaacagccc
     1501 cataacatat gaaacatcgg acacttcaag ggccttcatg ctaggaataa cagagttttc
     1561 tgagatcgaa aacaaacaaa atgcctcaac aaactcctgc tctgcaatat acagatattt
     1621 ttgaagatca tcctttccca actccttaaa ttgctccaat aattttttgg ccttttcgat
     1681 atattcgatt gattcttttt tcttgtgaga atgcaaagat actatagcct tgctgcagag
     1741 gattgtggca tccctagttc cttttatgat agcattcctt cgctcctcta catccttgaa
     1801 tttcctattg attttatcta cgtcagtttg aacatttgat agcatcatag aacaatatga
     1861 tttccaattt attaattaat tgaattctac agaataactc tcgtatagtt tttcaagaca
     1921 tgtttgttca aaagtttcat tctttctgga ttatatacta gtacgttgaa tgcaaaatat
     1981 cttggtgtat cagactcaaa cataccaaac tctagtacct gcaaataaga gaaaaatgca
     2041 atatgaatta gcacaagttt acaccagact aaataggatt agaaggaata gagggtacag
     2101 ttttgaacat atacttgttc aaaaattaaa cggcaatgtt tggaacgcga gacgtttagg
     2161 aggatcaagc gc
//
LOCUS       DASPFX010000009         5252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_850001, whole genome shotgun sequence.
ACCESSION   DASPFX010000009 DASPFX010000000
VERSION     DASPFX010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5252
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_850001"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1051
                     /locus_tag="VD694_00170"
     CDS             <1..1051
                     /locus_tag="VD694_00170"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HXW11144.1"
                     /translation="EYLVKRGAKVILTSHLGRPTVRDSNNSLAPVATRLKEILNRKVD
                     FVADCIGAQVESKIEKLGLGNILLLENLRYYDEEQNNDPEFSKSISSLADIYVNDAFS
                     TSHRKHASTYGAVRNFDIRLAGFSLKKEIEYLSMIRYNPRKPFTLVVGGSKIKDKIGA
                     LENLLPKADKLLVGGGAAYTFLKAKGFNIGNSLFDEEHFDWVKNALSSYGEKILLPVD
                     HIVSSEENSFSTVTGDIPNGMSGLDIGIETSRIYSSEIGGNGFGTVFWNGPMGLFEVG
                     QFAGGTMSVAKSMALAFWRGAMTLVGGGDTIAALKKSGVSENEVTHLSTGGGATLRFL
                     AGDKMPGIEALEQAN"
     gene            complement(1053..2642)
                     /locus_tag="VD694_00175"
     CDS             complement(1053..2642)
                     /locus_tag="VD694_00175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11145.1"
                     /translation="MLSIQTNTKCKLLFLILSIAVTLLVVGFSLGKNNLILAQSEQFS
                     QLQSTSKNQAILQFQTQFCGMNSTQNGNSFVTEYLLPQKCEMPLGILADNDSIWYIST
                     KLGHLGKLNTADNSTVEFTIPVWESRSRPTDMSQTWDIKSDSKGNIWFTDEKQNGIWR
                     YEQASNNFSFFPIPERPSAFGTIYPISIAFNDDDIYLGGIRSKSLWLANISDLKNNSS
                     EGISNISLPVSSFKGIDPDLVSTGSIEMDKDRNVLWISMLAFAVKGQLFMFDVPTRTF
                     TSYDLPPHLNSPVGIAIDKNGNPWVTDHGTSIFFMLNSTDGKITEYSTSPLFSNSASG
                     LNEFGYTLPYWIRMDSAGILWFNEHVGNKIARFNTTDRTLVEYWIPTQNSLWPPGISN
                     ALQFSIGKNNQIWFTEWTENKLGMLDGSKALPFVVDTGTAEYSAKKGDTIEIPLVISA
                     KDQVNLKMTASSTFTKTGNFGNSTFSFSQESFSMNSGETKNITFLVTPAEDLAIGDYT
                     IMIGAENNEVSYLDSIKVHIS"
     gene            2736..3155
                     /locus_tag="VD694_00180"
     CDS             2736..3155
                     /locus_tag="VD694_00180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HXW11146.1"
                     /translation="MKSITKYLTFHTEKKFKLVNITSEVEKIVHESHISEGICLVNSM
                     HITSSIFVNDNESGLHQDFEKWLENLAPHFPIKQYLHNDTGEDNADAHLKRQIMGRET
                     VVAVTNGKLDFGPWEQIFYGEFDGCRNKKVLIKVIGE"
     gene            3266..4660
                     /locus_tag="VD694_00185"
     CDS             3266..4660
                     /locus_tag="VD694_00185"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HXW11147.1"
                     /translation="MGSYRLDRDSLGEVKVPSNAYYGPFSVRASNHYKVTGQKPHVNM
                     IKAFAMIKRSAALANRDLKTLPVEKSDAIVKACDELLSEKLHDQIIVDTINSGAGTAF
                     NMNMNEVIANRALEISGRSIGDYSFISPNDDVNMSQSSNDTFPTAMHVALLMNLKGVV
                     DSLNLLILSLEKKAQEFKEVIKIGRTHLMDALPVTLGTEFDVYAFSLRKGLSKIEDVC
                     SDLEYVGLGGTAVGTGANTPPGYDKLVVKYLSQISELDLKPSQNYFFSLQSKFETTMC
                     SSVLRNIAIELIKISNDIRLMASGPIAGLSEITIPAVHAGSSIMPGKVNPSLSECLNM
                     ICFIIVGNDVSIALAAQAGQFELNVMLPGMIKNILESTDMLKNFLPIYSHNMIDGLKA
                     NDKKLASFVDQSPILVTLLNPHIGYLKASEIYKESMATNKSIRELILEKGLMTKEELD
                     NALSKRNILGSKYA"
     gene            4734..5123
                     /locus_tag="VD694_00190"
     CDS             4734..5123
                     /locus_tag="VD694_00190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11148.1"
                     /translation="MINKRILLTISFGILVTAIVFFGLQDSQNRPSLSRLPITPDTAI
                     LRVENTFNISENQIGKSPNYVFVKSDGKVYESNPELNNIGNYIGMTEPTTTGGSHFAW
                     EIDDFHDKHKYYVDSVLAEIISNSSYG"
BASE COUNT         1664 a          877 c         1099 g         1612 t
ORIGIN      
        1 tgagtatctt gtgaaaagag gggccaaagt aatactgacc tcacatctag gtagaccaac
       61 agtacgtgat agtaataatt ctcttgcccc tgtagcaaca agattgaagg aaattctcaa
      121 tcgaaaagtt gactttgttg cggattgcat aggtgcccaa gtagaaagta agatagagaa
      181 attagggctt gggaacatat tgcttttgga aaacttgaga tattatgatg aagagcaaaa
      241 taatgaccca gagttttcta aatccatttc atccttggcg gatatatacg taaatgatgc
      301 attcagtaca tcccatagaa aacatgcttc tacatacggg gccgtaagaa attttgatat
      361 ccgtctagca ggatttagtt taaaaaaaga gatagaatat ctgtcgatga taaggtacaa
      421 cccaagaaag ccatttacgt tggtagtagg cggctccaag atcaaggata agattggcgc
      481 gttggaaaat ttactgccaa aggcagataa actgctggta ggagggggag cagcttatac
      541 atttcttaag gcaaagggat ttaacattgg gaattcgtta tttgatgagg aacattttga
      601 ttgggtgaag aacgcacttt cttcttatgg tgagaagata ttacttccag tagatcatat
      661 tgtttcttcc gaggagaact cattttctac tgtaactgga gatataccaa atggaatgag
      721 cgggttggat attggtatcg aaacttctag gatttattct tcagaaatag gtggaaatgg
      781 ctttggtact gttttttgga atggacccat ggggctattt gaagtaggac aatttgcggg
      841 tggaacgatg agtgtagcca aaagtatggc tcttgcattt tggagaggcg caatgacact
      901 agtcggtggg ggtgacacaa ttgcagcact gaaaaagtca ggcgtatcag aaaacgaagt
      961 gactcacctg tcaactggag gtggggcgac tttgagattt ttagctggtg ataaaatgcc
     1021 aggtattgaa gctcttgaac aggcgaacta agtcaagaaa tatgtacttt tattgaatct
     1081 aggtatgata cttcattgtt ttctgcacca atcattatag tatagtctcc tattgcaaga
     1141 tcttcggcgg gggtaactag aaatgtaatg ttctttgtct cgccggaatt cattgaaaat
     1201 gattcctggc taaatgagaa agttgaattg ccaaagtttc cagttttagt gaatgtcgat
     1261 gatgctgtca tctttaggtt gacttgatct ttggccgata tgacaagtgg gatttcaata
     1321 gtgtcgcctt tctttgcact atactctgca gtgccggtat ctacaacaaa tgggagagct
     1381 ttcgaaccat ctaacatgcc tagtttattt tcagtccatt cagtgaacca tatttggtta
     1441 ttttttccta tcgaaaactg aagagcatta gagattccag gaggccacaa actgttttgc
     1501 gtaggtatcc aatattcaac aagtgttcta tccgtggtat tgaatctagc aatcttgtta
     1561 ccaacatgtt cgttgaacca tagaattcca gctgagtcca tccttatcca gtaaggtagc
     1621 gtatagccga attcatttag accactagca gaattgctaa agaggggcga agtactatat
     1681 tcagtaattt tgccgtctgt tgaatttaac ataaagaata tgctcgttcc atgatcggta
     1741 acccagggat ttccgttttt atctatagcg atacctacag gcgaattaag gtggggaggt
     1801 agatcatagg aagtaaaagt tcttgtgggt acgtcaaaca tgaataattg acctttaaca
     1861 gcaaacgcca gcattgaaat ccacaataca tttcgatcct tgtccatttc aatcgaacca
     1921 gtgcttacta gatctggatc tattccttta aaggaagata cgggtagcga gatatttgaa
     1981 ataccttcag aggagttgtt tttcagatct gatatatttg ccaaccaaag ggattttgat
     2041 ctaattccac caagataaat atcatcgtcg ttgaaagcta ttgaaatagg atagatagtt
     2101 ccaaatgctg aaggacgttc tggaatcgga aagaagctaa aattattact tgcctgttcg
     2161 tatctccaaa tgccattttg tttttcatcg gtaaaccaga tatttccttt agagtctgat
     2221 tttatgtccc atgtttgtga catatcggtc ggtcttgatc ggctctccca tacaggaatt
     2281 gtaaattcca cagtactgtt atctgcagta tttaattttc caagatgacc caacttggtt
     2341 gatatatacc atattgaatc attgtctgcc agaataccaa gtggcatctc acatttctga
     2401 ggaagtaaat attctgtaac gaaagagttg ccattttgtg tagaattcat tccacagaat
     2461 tgcgtttgaa attgtaggat tgcttggttt tttgaagtac tctgtaattg agaaaattgc
     2521 tctgattggg ccaatatcaa attattttta cccaggctaa aacccactac taagagtgtt
     2581 actgcaatag atagtatcaa aaagagtaac ttgcatttag tattagtttg aatacttaac
     2641 atgctatagc gatttgaaat gttagtagat ctaataagag tttttttatt ttcataacta
     2701 aaccatttaa ataataaacc taatttttca ttattatgaa gtcaattaca aaatatttga
     2761 cttttcatac tgaaaagaaa ttcaaattgg tgaacataac ttcggaagta gaaaaaattg
     2821 tgcatgagtc acatattagc gaagggattt gtctggtcaa ttccatgcac ataacatcca
     2881 gcatttttgt aaatgataac gagtctggct tgcatcagga ttttgaaaag tggcttgaaa
     2941 atttagcacc tcattttcct ataaagcaat atttgcataa tgatactgga gaagataacg
     3001 ccgatgccca cttaaagcgt caaataatgg gtcgtgaaac agtggtggcc gtcactaatg
     3061 gtaagcttga ttttggaccg tgggagcaaa ttttttatgg agaatttgat gggtgccgca
     3121 acaagaaagt ccttatcaaa gttatcggag agtaggacaa ggcatgtata ggcctgacat
     3181 atcagagctt cattaattat ggcaaatact cagtcctcgt tgtagagtcg attgatttat
     3241 tagatcaacg ctgtttttcg tatttatggg atcgtatcgt cttgataggg attctctagg
     3301 tgaggttaaa gttccatcta atgcatatta tggacccttt tcagttagag cttcaaacca
     3361 ttacaaggta actggtcaga aacctcacgt aaacatgata aaggcatttg cgatgataaa
     3421 acgttctgcg gctcttgcaa acagagactt gaaaactctc ccagtagaaa aatctgatgc
     3481 aattgtaaag gcttgcgacg aattactttc ggaaaaatta catgatcaaa tcatagttga
     3541 tactatcaat tcaggtgcag gaacagcttt taacatgaac atgaatgagg taattgcgaa
     3601 cagagcactt gaaattagtg gtcgtagtat tggcgattat tccttcatta gtcctaacga
     3661 tgatgtaaat atgtcacagt caagtaacga tacgtttcca actgcaatgc atgttgcgtt
     3721 attaatgaat ttgaagggag ttgtggattc gcttaatttg cttatactat cacttgaaaa
     3781 aaaggctcag gaatttaagg aggttattaa aattggtcga actcacttga tggacgcgtt
     3841 accagttacg ctgggcaccg aatttgatgt atatgctttt tcacttagaa aaggtttgag
     3901 caaaattgag gatgtatgtt ccgacctaga gtatgtggga ctgggtggta ctgctgttgg
     3961 tacaggggct aatactccac caggttatga taaactagta gtcaagtatc tctcccaaat
     4021 atcggaacta gatttaaagc cgtcacaaaa ctatttcttt tctctacaaa gcaaatttga
     4081 gacaacaatg tgttcctctg tcctaagaaa tatcgcaatt gagttaataa aaatatcaaa
     4141 tgatatcagg ttgatggcat caggtcctat tgctggattg tcagaaatta caatccccgc
     4201 cgttcatgct ggatcgtcta taatgcctgg taaagtaaat ccctcattat ctgaatgcct
     4261 taacatgatt tgttttataa tagtaggaaa tgatgtatcc attgctctgg ctgcccaggc
     4321 aggtcagttt gaactaaatg taatgttacc gggcatgata aaaaacatat tagaatcgac
     4381 cgatatgttg aagaattttc tgccaattta ttctcataac atgatagatg gtttgaaagc
     4441 aaatgacaag aaacttgcat cgtttgtgga tcagagcccc atactagtaa ctttgctcaa
     4501 tccccatata ggatatctta aagcatcaga gatatacaag gagtcaatgg caacaaacaa
     4561 aagcataaga gaattgatac ttgaaaaggg actaatgaca aaagaggaac tggataatgc
     4621 tctttcaaag agaaatattc taggttcaaa atacgcttga atttttcaaa tggatatgat
     4681 tgatttgcaa gaatgtgaaa tgacgtccta tattagaaca cagtagaatc tagttgataa
     4741 acaaaagaat cttgctaaca atttcctttg gaattttggt gacagctatt gttttttttg
     4801 gtcttcaaga ttcgcaaaat cggccgtcac tttcaaggtt gccaattact ccagatacag
     4861 cgatattaag ggtggaaaat accttcaaca tttctgaaaa ccaaattggc aagtctccta
     4921 attacgtatt tgtaaaatcg gatgggaaag tgtacgaatc aaatcccgaa ctcaataaca
     4981 taggaaacta tattggtatg acggaaccaa ctacgactgg aggtagccat tttgcttggg
     5041 agattgatga ttttcacgac aagcacaaat actatgttga ttcagttcta gcagaaataa
     5101 tttccaattc tagttacgga taggttacct ttagcaacca aattataaga cctgtaattt
     5161 gcatatgtca tgcaggttga gggaaaagta attgtctgcg acgccataga tgagattggc
     5221 ataaccattt taaaaaaggc aggactagta gt
//
LOCUS       DASPFX010000010         4415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1276212, whole genome shotgun sequence.
ACCESSION   DASPFX010000010 DASPFX010000000
VERSION     DASPFX010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4415
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1276212"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2749
                     /gene="uvrA"
                     /locus_tag="VD694_00195"
     CDS             <1..2749
                     /gene="uvrA"
                     /locus_tag="VD694_00195"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HXW11149.1"
                     /translation="SLSAYARQFLEMMDKPDVDSIEGLSPAISIQQKTTSKNPRSTVG
                     TVTEIYDYLRLLYARIGVPHCPQCGRKITAQSADFITDTIIRTSKGKSILLLAPIVEA
                     KKGTYEKLFQELKQNGYTRIRLDGEIINLSDDNDDKDNTEGVIKKDIKNRILNKFKKH
                     TIEVVVDRIRPSLEDRSRLFDSVQTALKTANGLVKILIPDDNNSETVYSQRKACTRCG
                     ISIQDLEPRSFSFNSPFGACEQCNGLGIKVEFDPELVIPDRKKSILDGAIKPWAGHFA
                     TFRSSMLRDVGKKFGFDLYQPISAMTKKQLGVILYGTDENIHYKYESRTSDSTWEYRS
                     SFEGVIPNLDRVYAQTESEAKRRDLEQFIRELPCELCKGMRLRPDSLAVKIAGKSIMN
                     VCDLSIDKCYDFFMSLSLSETDRYIAKNILKEIISRLEFLKNVGLNYLTLNRMTSTLS
                     GGESQRIRLATQIGSNLTGVLYVLDEPTIGLHQRDNNRLIETLRRLRDLGNTLIIVEH
                     DEEVIRSSDWIIDIGEGAGIHGGKIVADGLVKDIIDKKNSITGRFLKGDDKVYHKNME
                     RSAKSWITLHNARENNLKKITVDFPLGCMTTVTGVSGSGKSTLVNEILFKALSNHFYS
                     SKDKPGTHDKITGLQNLDKVIGIDQSPIGRTPRSNTATYVNAFGPIREIFSKTMKARE
                     MGYKPGRFSFNVPGGRCDSCEGAGVKRIEMQFLADVYVTCDECKGKRYNSETLQITYK
                     GKTISDVLDMTVEEALDFFSNISSIERKLMTLYDVGLGYIRLGQPATTLSGGEAQRIK
                     LSSELARRDTGSTLYILDEPTTGLHFADVKKLLHVLDRLVNIGNTVILIEHNLDVIAA
                     SDWIIDLGPEGGDNGGNIVVTGTPEQISNHISSYTGKYLKSKLVVSQTIRKKNKSGVR
                     T"
     gene            2791..4410
                     /gene="uvrC"
                     /locus_tag="VD694_00200"
     CDS             2791..4410
                     /gene="uvrC"
                     /locus_tag="VD694_00200"
                     /inference="COORDINATES: protein motif:HMM:TIGR00194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HXW11150.1"
                     /translation="MKELRKKVLTLPFEPGVYMMKNKEGRIIYIGKAKNLRKRVLSYF
                     SYRESYDTSNWKTSKLISKIQDIDFLVTDNEIEAFLLESNLIKQYRPLFNIDLKDQQR
                     YTYLKISDEKFPRLLVARRNRDGKFTGIRGKVFGPFVHGSSKLLTIGLLRKIFKIRIC
                     NTLPKKPCLEYFINNCDAPCINNVTQNEYMDNVQSLENILAGRKSIDDFIEKMNQDMT
                     SASSSLDYEKAKAIRDTISRLENLRSKQKIEQSISSRSEEEYIGIMYDFLQSKAHILI
                     LRRYRGVIRDRKKYQFDLVGDNSFSTFLSQYYYSKSTVPRFIYVNEDPDSKQVLEKSL
                     ERIASHRVNIIRLSNRIDIERKQLMDLIVRNLSTYISKGFEPALFDLKKVLNLRSLPK
                     IIDCFDVSNLGLSIAVGSCVRFVNGIPEKSFYRKFKIKTIKDQNDFAMIGEIVTRRYS
                     KEDKLNLPDLVLIDGGKGQLNCALDAISKLSLKIPCISIAKEREEIFVPNSPFPIVIP
                     KSSKSLKILQYLRDEAHRFGLSYNIKLRDLK"
BASE COUNT         1568 a          729 c          879 g         1239 t
ORIGIN      
        1 gtctctctct gcatatgcaa gacaattttt agaaatgatg gataaaccag atgtcgactc
       61 tatagaaggc ttatcacctg ccatatcaat acagcaaaag actacaagta agaatcctcg
      121 ctcgacagta ggtacggtga ccgagatata tgattatttg cgattacttt atgccagaat
      181 aggagtgcct cattgtcctc agtgtggaag aaagattact gcacagtccg cagattttat
      241 tactgatacc attattagga cttcaaaagg aaagagtata cttttactgg cccccatagt
      301 agaagcaaaa aaagggactt atgaaaaatt attccaagag ttaaaacaaa atggatatac
      361 aaggattaga ctggatggcg agatcatcaa tctgagtgac gacaatgatg ataaagataa
      421 tactgaaggt gtaattaaaa aagatatcaa aaatcgcata cttaacaaat tcaagaaaca
      481 cacgattgaa gtcgttgttg acaggataag accttcactt gaggataggt ctaggctgtt
      541 tgattcagta caaactgctc tgaagacagc aaatggactg gtcaaaattt tgatacccga
      601 tgataataat agcgaaacag tgtattcaca aagaaaagcc tgtactaggt gtggaataag
      661 tatccaggat cttgaaccgc gctcattctc atttaactca ccatttggag cgtgcgaaca
      721 gtgtaacgga cttggtatca aagtcgagtt tgacccagag ctagttattc cggataggaa
      781 aaagagcatt ttagatggtg caataaaacc atgggcaggc cactttgcaa cattcagatc
      841 ttcaatgttg cgcgacgtgg gcaagaagtt tgggtttgac ttatatcaac ccatatcggc
      901 tatgacaaaa aagcaattag gtgttatcct ttacggaaca gatgagaaca tacattacaa
      961 atacgaatct aggacatctg attctacatg ggagtatcgt agttcttttg aaggagtcat
     1021 accgaatttg gatagagtgt atgcacaaac agaatcagaa gcaaaacgaa gagacttaga
     1081 gcagttcata agagagctcc cgtgcgaact atgcaaaggt atgcgattgc gtcctgattc
     1141 tttggcagtt aaaattgctg gcaaatctat tatgaatgta tgtgatttgt caattgacaa
     1201 gtgttatgat tttttcatga gtctttctct ttctgagact gatagatata ttgcaaaaaa
     1261 tatactaaag gaaattatct ctagactgga atttctaaaa aatgttggac ttaactatct
     1321 tactttgaac aggatgacgt ctactctatc tggtggcgaa tcacagagaa tacgtcttgc
     1381 cacacagatt ggctctaacc tcacgggcgt tttgtatgtt cttgatgagc caacgattgg
     1441 gcttcatcag cgagataaca acagattgat tgaaacacta agaagattac gagaccttgg
     1501 taacacgctt ataatagtgg agcatgatga agaagttatt agaagctcag attggattat
     1561 cgatatcggt gagggtgccg gaattcatgg tgggaagata gttgcagacg gtcttgtcaa
     1621 agatatcata gataagaaga attctataac tggaagattc cttaaaggcg acgacaaggt
     1681 ataccacaag aatatggaaa ggagtgcgaa gagctggatt actcttcata atgctagaga
     1741 gaacaatctc aagaaaataa cagtagactt tcctcttggt tgcatgacaa cagttactgg
     1801 cgtatcgggc tctggaaaat cgactctagt aaatgaaata cttttcaaag cattatcaaa
     1861 tcacttttac tcttcaaagg ataagcccgg gacccatgat aaaatcacgg gtcttcaaaa
     1921 tttggacaag gtaataggga ttgatcaatc tccaattggt agaacaccca ggtctaatac
     1981 agcaacttat gtgaatgctt ttggtcccat acgagagatc ttttctaaaa cgatgaaagc
     2041 tcgagaaatg ggatataaac ctggtcgatt ttcattcaat gttccaggcg gtcgctgtga
     2101 ttcatgtgaa ggggcggggg tcaaaagaat cgagatgcag tttcttgcag atgtatatgt
     2161 tacttgcgat gagtgtaagg gcaaaagata caattcagaa accttacaga taacatacaa
     2221 aggcaagaca atttcagacg tgctagacat gactgttgaa gaggctcttg atttcttttc
     2281 aaatatctca tctattgaaa gaaaactaat gacgctttat gatgtcggct taggatatat
     2341 aagattagga cagccggcaa caacactttc aggaggagag gcgcagagaa taaagttatc
     2401 ttcagaactt gcaagaaggg atactggaag tacgctgtat attttggatg aaccaactac
     2461 aggattacat tttgctgatg taaaaaagct gctgcatgta ttagatagac ttgtaaatat
     2521 tggcaataca gtcatattga tagaacacaa tcttgacgta atagcagcgt ctgactggat
     2581 aattgatctt ggtcctgaag gaggagacaa cggtggaaat attgttgtta ctggcacacc
     2641 agaacaaata tcaaaccata tttcaagcta tactggaaaa tatcttaaat ccaagttggt
     2701 tgtaagccag acaataagaa aaaaaaataa aagtggtgtg cgcacttaac aactccaata
     2761 tcaaccagaa ttctattcaa atctgaaaat attaaggagc tacgaaaaaa agtcctaact
     2821 cttccttttg agccaggagt atacatgatg aaaaataaag aggggagaat tatctacatt
     2881 ggtaaggcaa agaatctacg aaagcgtgta ttgtcttact ttagctatag agagtcttat
     2941 gacacttcca actggaagac atccaaactc atcagcaaaa tccaagatat tgatttcctt
     3001 gtcacagata atgaaattga ggccttcttg ttagaatcga atctaataaa acaatataga
     3061 ccgttattta acatagacct taaggaccaa cagcgctata cttatcttaa aatttcagac
     3121 gaaaaatttc ctagattgct tgtagcaaga aggaatagag atggtaaatt tacaggtatc
     3181 agaggcaaag tgtttggacc ttttgtacat ggaagctcaa aattgcttac cataggttta
     3241 ttgagaaaaa tctttaaaat cagaatttgt aacacacttc caaaaaaacc ttgtcttgaa
     3301 tattttatca ataactgcga tgctccctgc ataaataacg ttacccagaa tgaatatatg
     3361 gataacgttc aatcgctaga aaatattctt gcgggaagaa aaagtattga tgactttata
     3421 gaaaaaatga atcaggatat gactagtgca tcgtctagcc tcgactatga aaaagcaaaa
     3481 gcaattagag atactataag cagacttgaa aatctgagat caaaacaaaa aatcgaacaa
     3541 tcaatcagtt caagatctga agaggagtac attggaatca tgtatgactt tttgcaatcc
     3601 aaagcacaca tactgatatt gagaagatat cgtggagtca ttagggatag aaaaaagtac
     3661 caatttgatt tggtaggtga taactcattt tctactttct tgtcacaata ttattattcc
     3721 aaatcaacag taccccgatt tatctatgtt aatgaagatc ccgattcaaa acaagtactt
     3781 gaaaagtcct tggaaaggat tgcatcacat agagtgaaca ttattaggtt atctaacaga
     3841 atcgatattg aaagaaaaca attgatggat ttaattgtta gaaatttatc gacctatatc
     3901 tcaaaaggtt ttgaacccgc cctatttgac ctaaaaaaag tacttaacct taggtcactt
     3961 cccaaaatta ttgactgttt tgatgtctca aatcttggct tatcaatagc tgttggttcc
     4021 tgtgttagat ttgttaatgg aattcctgag aaatcatttt atcgaaaatt caaaataaaa
     4081 acaataaagg atcaaaatga tttcgcaatg ataggtgaga tagtaactcg ccgatattca
     4141 aaagaagata aactaaattt accagattta gtattaattg acggtgggaa aggtcaactt
     4201 aattgtgcac ttgatgcaat atcaaaatta agtttaaaaa tcccgtgcat atcaattgca
     4261 aaagaaagag aagaaatttt tgttccaaat tcacccttcc caatagttat tcccaagagt
     4321 agcaagtcac ttaaaatatt acaatatcta agggatgaag ctcacaggtt tggactaagt
     4381 tataatataa agttgcgtga cttgaaataa atttg
//
LOCUS       DASPFX010000011         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_564890, whole genome shotgun sequence.
ACCESSION   DASPFX010000011 DASPFX010000000
VERSION     DASPFX010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_564890"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..76
                     /locus_tag="VD694_00205"
     tRNA            3..76
                     /locus_tag="VD694_00205"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:37..39,aa:Pro,seq:cgg)
     gene            120..1073
                     /locus_tag="VD694_00210"
     CDS             120..1073
                     /locus_tag="VD694_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11151.1"
                     /translation="MIVLLAEPSAENKIQDVTSPYYMFKYSIRSELTRKYYERRLRTF
                     FDFLGFQSGSEIKERCNQFAQKGKEDTDWTIVQIIRFLQYEKNRVEKGEITAATLINF
                     VKSIKLYCEMSDIPIPWKKITRGLPRPRAVANDRAPTVEEIRQLVEYPDRRIKPIIYT
                     MASSGIELGAWDYLKWKHIIPLTNNNGELVAAKILVYSGDSGEYYAFITLEAYNSLKD
                     WMEFRLEYGERITGESWVMRDIWQTSNMKYGAKFGLATNPKKLKSSGIKRLIEQALWE
                     QGIRSKLQEGVRRHEWKAVHLFRNIRIISIFSSQYATKYFW"
     gene            1326..1730
                     /locus_tag="VD694_00215"
     CDS             1326..1730
                     /locus_tag="VD694_00215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11152.1"
                     /translation="MTKSLLLALALLATISTTATTMTVNNVSAEKCEDIKGVEKWDAE
                     GHGSNDPSSKEFKEMLSDDSVTICELAESIDHMEVKGSVDDWSDFKDTTVFMSTTEKV
                     QDCLKDRFDLPDDDGEEHLADYEIQKCATGDY"
     gene            complement(1869..>2133)
                     /locus_tag="VD694_00220"
     CDS             complement(1869..>2133)
                     /locus_tag="VD694_00220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11153.1"
                     /translation="EDEKMQNQLIYAVMEVYASNGTLIRTSTASAFTLQSDGGEQVLR
                     TTIHDKSLESVSIEIVFTDLTKKIPLSNTITDDLKLEEGSTTD"
BASE COUNT          714 a          367 c          430 g          622 t
ORIGIN      
        1 gaggggttgt cgtctagctt ggtatgatgc cagcctcggg cgctggaggt cgtcggttcg
       61 aatccgacca gccccatgtc aatctttaca ttttatttag tcccatctcc attaattaat
      121 tgatagtatt gctagctgaa ccttctgctg agaacaaaat tcaggatgtt acatctccat
      181 attacatgtt caaatattca atcaggtctg agttgacaag aaaatattat gaaagaagat
      241 taaggacgtt ttttgatttt cttggatttc aaagcggttc ggagataaag gaacgttgta
      301 atcagtttgc tcaaaaagga aaagaagata ctgattggac aatagttcag ataattagat
      361 ttctccaata tgaaaaaaat agggtagaaa aaggtgagat tactgccgca acattgatca
      421 attttgtcaa atcaatcaaa ttatactgtg agatgtccga tatcccaatc ccttggaaaa
      481 aaattacaag aggtctacca cgacctagag ccgtagcaaa cgacagggca cctacagttg
      541 aagaaataag acaactagtt gaatatcccg acaggaggat caaaccaata atttacacca
      601 tggcatcatc tgggattgag ttaggagcat gggattacct taagtggaaa catattattc
      661 cattgaccaa caacaatggc gaattagtag ctgccaagat attagtgtat tctggggatt
      721 ctggagaata ttatgcattc ataactcttg aagcttataa ttcgttaaag gactggatgg
      781 aattccgttt agaatatggc gaaagaatta cgggagagtc ttgggtgatg cgcgatattt
      841 ggcaaacgtc taacatgaaa tatggcgcaa agtttggtct tgcaacaaac ccaaagaaat
      901 tgaaaagcag tggaatcaaa agactaattg aacaggcatt gtgggaacag ggaatacgtt
      961 caaaattaca ggagggagtt agacgtcatg aatggaaagc tgtccatctc tttcggaata
     1021 ttaggataat atcaatcttt tctagccaat atgctacaaa gtatttttgg taaatattat
     1081 gatttgctct ggatcagaag ctaaatcatt gggtcaaaaa tcatgtcaaa tttagttcac
     1141 aaacgaccat tcaaaaatac cactcaaaca taatgaacag cgacaaaata attcacttga
     1201 cattttagat atcttaggaa tcatatgaaa aatacaagaa tctcttgatc atctggttaa
     1261 ttcatacaaa ttctcgaatg gcagaacttt tataacgtaa aaaccaactt tatattggtt
     1321 gtgttatgac aaaatcgtta ctgcttgcat tagcgttact ggcaacaata tctacaacgg
     1381 caacaacaat gacagtaaac aatgtaagtg cagaaaaatg tgaagacata aaaggtgttg
     1441 agaagtggga tgcggaagga catggatcaa acgacccatc ttcaaaagag tttaaagaga
     1501 tgctcagcga tgattctgta actatatgcg aacttgccga atcgattgac catatggaag
     1561 taaaaggctc tgtagatgat tggtctgact ttaaggatac aactgtcttc atgagcacta
     1621 cagaaaaggt gcaggattgt ctaaaagata ggttcgactt acctgacgat gatggtgaag
     1681 aacatctagc agattatgag atccaaaaat gcgccactgg tgattactaa caagaaccta
     1741 aacttttatt cctttttttt aattaagcta gtgtatcctc ataagtcttc attattccta
     1801 gattagtggc tggataagat atagatattt tatactgacg ctcagagtaa gaacctacaa
     1861 tactcttctc aatcggttgt cgagccctct tccaatttca ggtcgtcagt aattgtattt
     1921 gataaaggaa ttttcttggt caaatcagtg aatacgattt ctatggacac gctttccaaa
     1981 gacttgtcat gaatggtagt tcttagcacc tgttccccgc catcactttg aagagtaaat
     2041 gcgctcgcag ttgaagttcg aatgagtgtt ccgttggaag catagacctc cattactgcg
     2101 tatattaatt gattttgcat tttttcatct tca
//
LOCUS       DASPFX010000012         2853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_280456, whole genome shotgun sequence.
ACCESSION   DASPFX010000012 DASPFX010000000
VERSION     DASPFX010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280456"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VD694_00225"
     CDS             <1..302
                     /locus_tag="VD694_00225"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HXW11154.1"
                     /translation="TGGGGFDTLDGGPGNDELNGDDDRDKLFGGTEDDVLYGGLGNDI
                     LDGGAGDDRLYGGPGNDTLKGGPGGDYFRCGPGVDTIGTFNPADGDHEFGDCEIK"
     gene            complement(391..942)
                     /locus_tag="VD694_00230"
     CDS             complement(391..942)
                     /locus_tag="VD694_00230"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HXW11155.1"
                     /translation="MLHRKVIGIIMIAIVSSLVIAVSIDYNHVKAAEAKQQFKAKLKG
                     ENEVPPVSTSAEGKVKLKVKESNIKFKLNITGISDASAAHIHQGKTGQNGEPVVDLLA
                     SGNKMTTQNGVFINGSIVDSNLIGPMKGKTISDLVSSMNDGNNYVNVHTQANPNGEVR
                     GQLEISGSTNTTSTADETDSDVE"
     gene            1240..2769
                     /locus_tag="VD694_00235"
     CDS             1240..2769
                     /locus_tag="VD694_00235"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HXW11156.1"
                     /translation="MKGFLLIEALLITILLLNAADIKATSQTENAKTALSDQDQCITY
                     DAMQKLIEIKCQSIHLTDIYNKLSNTGILIQENDNAKSKVWILKAGIVIDKKGGLIID
                     SSDTSWLKIVSTPTMQLKQESTKLLDEKSNKSNDTLIIIQNGSNSNANNKDNNLKGKD
                     DTVVVSKHNGDNPNGIHVHGSLKIDSVKITSWDPVKKDVIKFDYGKRPGEEHTKSDYD
                     TAEPRAFIRVSKDAEGTTNITDSEIAYLGYSCSRCAGISYYGGEGSVIKNSDIHHLLK
                     GYYSKNMGYMLIEDNKFHDNYLYGIDPHTGSNNIIIRKNIVYNNNASGIICSKDCHSL
                     LIEGNEVYNNSGAGRGISFSINTTNSIARNNYVYDNPRCVAFNRGSNFNEVYNNTLLN
                     CKTGISVSGTSNNLIRDNKIVNASNGISIKNVTNNIYDNEISGTKNGIVFLSQIPLNI
                     TDIPIDLPLEHDFSKLNNSLSEIVNKNKISDTKEPFLIKTPNENDTDMEDFSNNSTEL
                     F"
BASE COUNT          966 a          497 c          539 g          851 t
ORIGIN      
        1 tgacgggcgg aggaggattc gatacattgg atggtggacc tgggaatgat gaattgaatg
       61 gagatgatga ccgcgacaaa ctattcggcg gaactgaaga tgatgtattg tatgggggtc
      121 taggaaacga tattcttgac ggcggagcag gtgatgaccg tctctatggg ggacctggga
      181 atgacacatt gaaaggaggt ccaggtgggg attactttag atgcggtccg ggagttgata
      241 cgataggaac atttaatcct gccgacggtg atcatgagtt tggcgactgt gagataaagt
      301 aatctctttt gaactaaatt aaaaaaagca cagccttaca ttaactttca aaaataaaaa
      361 aagaaagtat ttggttgttg cgtatgtaag ttattcaaca tctgaatctg tttcatctgc
      421 tgtagaagtt gtgttagttg atccggatat ctccaattgc cccctgacct ctccatttgg
      481 attggcttgt gtatgtacat taacataatt atttccatca ttcattgaag ataccaagtc
      541 agaaatagtt tttcctttca ttggaccaat gagatttgaa tcgacgatac ttccgtttat
      601 aaatacgccg ttttgggtcg tcatcttatt accgcttgca agcaaatcta ccacgggctc
      661 accattttgt cctgttttcc cttggtgtat gtgagctgca cttgcatcac tgataccggt
      721 gatatttagt ttgaatttaa tatttgactc ctttactttt aatttgactt ttccttcagc
      781 gctagtactc actggtggaa cctcattttc tccctttagt tttgctttga actgctgctt
      841 tgcttccgca gcttttacat ggttgtaatc tatactaact gctatgacta gactagaaac
      901 aatcgcgatc attataattc caatgacttt tctgtgaagc atcgaaagtt tctaagtgcc
      961 tcactgctat aaactttgta ttttcgatta ttgagaaaac aatcagcttg ttgatttagt
     1021 caagaatcca atatttccat tattgcaagt ccttagtttc cacgaattca acattctcat
     1081 caattgagag gtatcactac taatcaaaaa gctatgtatt tacaccacat acatggcggg
     1141 aatagcattg gtgtcaaaat atttaacaaa taattagata gtgtttgaca ccactaaaga
     1201 taaatagaat ttaaaattca gtcttaggga taaagactag tgaagggttt tctgctaatt
     1261 gaagcattac taataacgat attgttactg aatgctgccg atataaaggc gacttctcag
     1321 accgaaaatg cgaaaaccgc cctatccgat caagatcaat gcataacata tgatgctatg
     1381 cagaaattaa tcgagataaa gtgccaatca attcatctta ctgatattta caacaagctg
     1441 agtaacaccg ggatattaat tcaggaaaat gataacgcta aatccaaagt atggatatta
     1501 aaagccggta ttgtaattga taagaaaggc ggtctgatca ttgactcgtc cgatacctcc
     1561 tggttaaaga ttgttagcac tccaacaatg cagttaaagc aagaatctac caaattgtta
     1621 gatgagaaat ccaataaatc caatgataca cttatcatta ttcagaatgg ttcaaattca
     1681 aatgctaata ataaagataa caatcttaaa ggtaaagacg atactgtagt tgtaagcaag
     1741 cacaatggag ataacccaaa tggaattcat gtgcacggct ctctgaaaat cgactcagta
     1801 aagataacat catgggatcc tgtgaaaaag gatgtcataa aatttgatta tggaaagcga
     1861 ccaggagagg aacatacaaa gtcggactac gacacagcag aaccaagggc tttcataagg
     1921 gtctcaaaag atgctgaagg aactaccaat attactgatt cagaaattgc atatcttgga
     1981 tattcatgta gcagatgtgc aggaatttcg tattacggag gtgaaggctc cgtaataaaa
     2041 aatagtgaca tacatcattt gctaaaggga tattattcaa aaaatatggg ttacatgttg
     2101 atagaggata acaaatttca tgacaactat ttgtacggaa tagatcctca tacaggtagc
     2161 aataatatca ttatcagaaa aaatattgtt tataacaaca atgcttcggg tataatttgt
     2221 tcaaaggatt gccatagcct gttaatagaa ggtaatgaag tttacaacaa tagcggtgct
     2281 ggtaggggta tttcattcag tattaataca actaattcaa ttgccagaaa caattatgtt
     2341 tatgataatc ctcgctgtgt agcatttaac cgaggatcca attttaacga agtctacaac
     2401 aatactctgc tgaactgtaa aacaggaata tctgtatcag gtacctctaa caatttaata
     2461 cgtgataata aaatagtcaa tgcaagcaat ggcatatcca tcaagaacgt tactaacaat
     2521 atatatgata atgaaatatc gggtacaaaa aacggtatag tttttctgag tcagataccc
     2581 ctaaatataa cagatattcc catcgatctt ccccttgaac acgacttcag taaacttaac
     2641 aattctctta gcgaaattgt gaataagaac aagatttcag acacaaaaga gccatttttg
     2701 ataaaaacac caaatgaaaa cgacacggac atggaagatt tcagtaataa ctcgaccgaa
     2761 ttattttaaa tactgaattc ctaagctatg ttgcttctaa tcagtagtat cgtagaagct
     2821 attaaccatg atgaaatcgc tatcaatcct aag
//
LOCUS       DASPFX010000013         2551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1560095, whole genome shotgun sequence.
ACCESSION   DASPFX010000013 DASPFX010000000
VERSION     DASPFX010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1560095"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /locus_tag="VD694_00240"
     CDS             <1..620
                     /locus_tag="VD694_00240"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HXW11157.1"
                     /translation="QAAIGICKYFKKVIASDASKSQIEHRFHRDNIVYDIFPAEKANL
                     QDNSVDLITVAQAAHWFDLTKFYQEVKRVSNGNEGIIAIWAYGMHKINPEIDMVSEKL
                     TVGGEILGNYWPKETIYVKQDYKTIPFPFKEIAVPKLEMKVNWSLDDLFTYMETWSSV
                     KKFQIEKKYDPLSVVKEEMKNLWGIEGTKKVVRWTINLRVGIIQK"
     gene            complement(972..1316)
                     /locus_tag="VD694_00245"
     CDS             complement(972..1316)
                     /locus_tag="VD694_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase N-terminal
                     domain-containing protein"
                     /protein_id="HXW11158.1"
                     /translation="MQFSLISVVVINENRMEDLARWADIIGIIAGILVMSSSIPQIMK
                     SYKTKKMSDVSFYLMSLIASGLFLWIIYGLIRSDPVIIGTNAAGLCLNVTLLIMKIGY
                     DKMQSSGTVKTT"
     gene            complement(1453..1737)
                     /locus_tag="VD694_00250"
     CDS             complement(1453..1737)
                     /locus_tag="VD694_00250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11159.1"
                     /translation="MIYGAVAAFELGVIMMVVVVVLLASTHPVFADSYEKTQTISQVN
                     ECGNYWFPVNIICSNLSSKAQGVENDAGIAAATSNSQSTDSDKNYGTPFP"
     gene            complement(2063..2350)
                     /locus_tag="VD694_00255"
     CDS             complement(2063..2350)
                     /locus_tag="VD694_00255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11160.1"
                     /translation="MLNANKLNFLFNTRMNTKYMFVVAAMAVMLIGATAFATDSAFAD
                     GKKKYGKSQSISQVNECGNGVMPKDIGCQNTASQIQGDENILTTAADQIFS"
BASE COUNT          857 a          465 c          436 g          793 t
ORIGIN      
        1 gacaggctgc cattggaatt tgcaaatatt ttaagaaagt tatagcaagt gacgcaagca
       61 agagtcaaat tgagcataga ttccacagag acaacattgt ctatgacata tttcctgcag
      121 agaaagcgaa cttacaagac aattcagtag acttgataac tgttgcacag gccgcgcatt
      181 ggtttgatct tacgaagttt taccaggaag taaaacgggt tagcaatgga aatgagggaa
      241 taattgcaat atgggcttat gggatgcata aaattaatcc tgaaatcgat atggttagtg
      301 aaaaacttac agtaggcgga gaaattctcg gtaattattg gccaaaagaa accatatacg
      361 tcaagcaaga ctataaaacg attccatttc cttttaagga gattgcagta ccaaaattag
      421 agatgaaggt aaattggagc ttagacgatc tctttaccta tatggaaaca tggtcatcgg
      481 taaaaaagtt ccaaatagag aaaaaatatg atccattgag tgtagtcaaa gaagagatga
      541 aaaatttatg gggaatagaa ggtactaaga aggttgtaag atggaccata aacctgaggg
      601 tggggattat ccaaaaataa gtgataattc acgatctttt caatgaacct attatctaca
      661 ggtaaatcct attacaacac ggttccgaaa actgaaacat ttttagaaat gatatctcta
      721 ctagtagtaa cgatcccctt tacctacaga atctaaccct tggacgcata ccgatatcag
      781 tgcttaatta gggttctcac gcaatatgat aggaggaaac taaagataat aatcaaatta
      841 agggataaaa tagagactgt catgcttcat atagtatcca taatatttac taattttgtt
      901 tagataattt cacttcatct acgaaggaac cgagattagc gcacatatat caaatcgata
      961 tgtatagaag tttatgtcgt ttttacggta ccactgcttt gcatcttatc atatccaatt
     1021 ttcataatta acaaagtgac attcagacaa agtccagctg cgttagttcc aattatgacc
     1081 gggtcagatc tgataagtcc atatataatc catagaaata atccacttgc tataaggctc
     1141 atcaaataaa aagatacatc ggacatcttt ttcgtcttgt aagatttcat tatctggggt
     1201 atggatgaag acattaccaa aatgccagca ataataccta tgatatcagc ccatcgagca
     1261 agatcttcca ttctattctc attgattacc acaacggata taagggaaaa ttgcaaaatg
     1321 gtctaatatc gacttagccc cagatatcta ctgtaagtat cacattgaaa atttttatgg
     1381 aattgtgcct taacttgtca taagagtatt agaatcatcg ttctagtcag cattgttaaa
     1441 caactaaagc ttctacggaa atggggttcc ataattcttg tcagaatcag tactttggct
     1501 atttgaagtt gcagccgcta ttccagcatc attctcaaca ccttgagctt tggagcttaa
     1561 attagagcat attatattta ctggaaacca ataattgccg cattcattaa cttgagatat
     1621 ggtttgagtt ttctcataac tatccgcaaa caccggatgc gttgatgcaa gcaatacaac
     1681 aacgacgacc atcatgataa cacctaattc aaatgcagct accgctccat agatcatatt
     1741 caaccttgtt ggttgaagtt aatttcagtt aagaaaatac aatagcaaac agaaatcata
     1801 tatccattat atcacatata atggacaaat cttcgattat cgctttttgg tattatttta
     1861 ccaaatccgg ctcgaagaac taattagatt gatatcttta caataggcta tcaaatgata
     1921 cttattcact aattacctca agtcttcctt tttactctaa aacaattaaa gtattaataa
     1981 atgtactaga catggtacag cctaattgca aatacaatag aaaaaaaggt aagtcgtaga
     2041 atttctattt ttgtacttct acttacgaga atatttgatc tgctgctgtg gttaatatgt
     2101 tctcatcgcc ttggatctgt gatgcagtgt tttggcatcc gatatccttt ggcatgactc
     2161 cgttaccaca ttcattaact tgtgagattg attgactctt tccatatttc ttctttccat
     2221 cagcaaatgc gctatctgtt gcaaaagctg tcgctccaat gagcatgact gccattgctg
     2281 ccactacgaa catatatttg gtattcattc tagtattgaa aagaaaattt agtttatttg
     2341 cattaagcaa attcagacgt tttcattaat ctgatatata ttctgttaga actaatcaga
     2401 atcttatacg gttggtagta tcagacaatt atctcatagc caaacattct tcttttgacc
     2461 attctctttt gaatggcatt atcttcttag ttcgaggtgg ttcatcccac catcccatca
     2521 gaccatgaca cctgctgcat cgaagctcta c
//
LOCUS       DASPFX010000014         2463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1275509, whole genome shotgun sequence.
ACCESSION   DASPFX010000014 DASPFX010000000
VERSION     DASPFX010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275509"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(361..708)
                     /locus_tag="VD694_00260"
     CDS             complement(361..708)
                     /locus_tag="VD694_00260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11161.1"
                     /translation="MISGAYYNMLYLVTGVWVEDPSMTIEEFAKLWEQLVHQSLETLS
                     KTFDGNKTGGIYAGQRRGVFILDASSHEEVGSFITNLPFWSHLTWNVEPLQSFRSTIE
                     KDMKAMENLSGKK"
     gene            756..971
                     /locus_tag="VD694_00265"
     CDS             756..971
                     /locus_tag="VD694_00265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11162.1"
                     /translation="MLNHILNMQMIVRQGADIAQLVIGVGGLVYGITSGAVAVTASYW
                     NNIISLCFDVGDVAQLGTIYFERKKSS"
     gene            1457..1705
                     /locus_tag="VD694_00270"
     CDS             1457..1705
                     /locus_tag="VD694_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11163.1"
                     /translation="MKTYVICIVVITAAIALAFAAVQVPLILTAGTQNMMTSSEAAAQ
                     NQTEMTSSTATNFTVQKTATSTVDALPFHQGHQPMENQ"
     gene            1702..1896
                     /locus_tag="VD694_00275"
     CDS             1702..1896
                     /locus_tag="VD694_00275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11164.1"
                     /translation="MTAPFGNGETAISLILGTNGAATLASYYSGSLNFAADQVAFHTI
                     GGIPFTVTYTVDAEAKSPTG"
BASE COUNT          803 a          472 c          476 g          712 t
ORIGIN      
        1 ggggatttcc tcgggagccg ttaattgtcc cggtgaattt ccaattactt cataagacaa
       61 tggctaaaca tacggtcaaa tgtctagcgc atagaagggt taggattcat cccaaatttg
      121 ataaactaat tacatcattg aaatcagcta cgaccaagga tgattaatct ttggacaagt
      181 caaagtcagc attcaatgat ttattcgata gtttcagaat ggctttactc tgcctgaagg
      241 cagaaggaga gtgagtgtaa gtttcccgtt taactgagta cggccatgct caaatcaaat
      301 actattgtat gagatgggga aacgagcaca ccccccggaa aaaagggatg acgtagccac
      361 ttatttctta cctgaaagat tttccatagc tttcatgtct ttttcaatag tagaacggaa
      421 ggactgcaat ggctccacat tccacgtcaa atgactccag aatggtaaat ttgtaataaa
      481 actacccact tcctcatgag acgaggcgtc aagtatgaaa accccccttc tctgaccagc
      541 atatatgcca ccagtcttat taccgtcaaa ggttttggaa agagtttcaa gactttgatg
      601 taccagttgc tcccaaagct tcgcaaattc ttctatagtc atcgaaggat cttcaaccca
      661 tactccagtt acaagataca acatattgta atatgcaccc gatatcaact atttatcctt
      721 gtctgctgag tgtacacggg aagaggctaa tgagtttgtt aaatcacatt ctgaacatgc
      781 aaatgatcgt caggcaaggt gcagatattg cacaattagt gataggagtc ggaggattag
      841 tgtatggtat aacaagcggt gcagtcgcag tgactgcgag ttactggaat aacataataa
      901 gtttgtgctt cgatgtcgga gacgttgccc agttgggtac catatatttc gagaggaaga
      961 agagcagcta aatcatcact atttaatgcc tttaggtcgg tcgtaagttc atattgagga
     1021 aaataccaaa agatcatgca aaagaaatca aattaaattc attttgatct tataacgtct
     1081 aataatattt atgattctgc taacgctgaa aattaagcga aaaatactct ttttaagaca
     1141 atgttaaact atttttgcaa gaattgaatc caatttgcat agtgtattta tatcaatagt
     1201 ataaagcgtt attcattgac tgtacatgtg aattttcggt atcttcccta tcatcgtggg
     1261 atagtggaat atgccgtagt tgtccaaaat aagatagtat aagatattta tatcacttta
     1321 ccggtagtaa aaatcttccg aaaaagagat cttaaaacat acaacagata tttaataata
     1381 aacttctttt atgtttaata ataaccaata ctgagaacca gctaagtcaa gatcatgtca
     1441 taacaaacca accgtgatga aaacgtatgt aatatgtatc gtggtaataa cagcagcgat
     1501 agcattagca ttcgcagccg tacaagttcc attgatattg actgcgggta cacagaatat
     1561 gatgacaagt agtgaagcag ctgcacaaaa ccagacagaa atgacatcct caacagctac
     1621 gaattttaca gttcaaaaaa ctgcgacatc aactgtagat gctttgccat ttcatcaggg
     1681 gcatcagccc atggaaaacc agtgacagca ccatttggta atggtgaaac agcgatctca
     1741 ctgatattgg gaactaatgg agcagccaca ttagcgagtt attattctgg ttctttgaac
     1801 ttcgcagctg accaggtagc attccatact ataggtggca taccattcac cgttacgtat
     1861 acagtagatg cagaagcaaa gagtccaact ggttagaata gaagtatgtt aaaacacttc
     1921 cctctttttt tacgcgaccg aatgaaagac cagaagttca aaagacatga gaaatcgaca
     1981 acacaaatgt aaacacatat cgatagacga atcgttcgac ggacatgatg ttgcaaaatg
     2041 tgaagtcttt cagttttttc ggactaaacc ccaacagtct tatgccgttc aatagaactt
     2101 ctttgtgctt tttgcaagaa ttggttccat gatcccatca caacatatgc catcgataac
     2161 aggtcgttat ttgaatacaa ctctgttctt gctgtctcaa tgtctcacct acgctgctga
     2221 taaatctcgt tccaccaatg gcggcttttt tttcggcaaa gccatataat gtccgattaa
     2281 atcaaaatat tgatagtacc gcttatgcag aatggagtag catatcaaga tatttctctc
     2341 tatcataatt ttgcgtcgaa atgaattttg ctggagctat tctaggcaat ggatcagtat
     2401 gttgtgagtc agagtgaaca tattggattg tatcgccgcg gttagtaata acccaagaaa
     2461 tat
//
LOCUS       DASPFX010000015         2086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1418324, whole genome shotgun sequence.
ACCESSION   DASPFX010000015 DASPFX010000000
VERSION     DASPFX010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1418324"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..184)
                     /locus_tag="VD694_00280"
     tRNA            complement(97..184)
                     /locus_tag="VD694_00280"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(148..150),aa:Lys,seq:ctt)
     gene            complement(306..902)
                     /locus_tag="VD694_00285"
     CDS             complement(306..902)
                     /locus_tag="VD694_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HXW11165.1"
                     /translation="MTTIDKSMQINAPISEVFTYFARPEHMADQFPENMGLNVIPIEV
                     KNGFGVGTIFRINGDFDGKRLEWDCETTEYIPHRKIVAKMIEGPFKRWIITVNFEPLG
                     EKETKTSIKVDYDMPMGPLGGFIDKIKLKKIAERGIENGLYRVKALLEGTGSIPVYIT
                     LDAYREILKEKEKAKLSVSETIIKIIKDNQVQKVSQQK"
     gene            complement(1278..>2086)
                     /locus_tag="VD694_00290"
     CDS             complement(1278..>2086)
                     /locus_tag="VD694_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HXW11166.1"
                     /translation="YEIYDKITPDPAIETIEEIKRKYEGKQISAYIGLGGGSSMDVCK
                     YLGKLTGIPKILIPTTFGTGAEMTTYAVVSFDHKKKLLQDEAFLADAAIVDPYFLPGT
                     PFNIMRNSACDALAQASEGYDSKLGNPFTKLFCKEAFDILEDAIMNDKQELLPYGAML
                     SGIGFGNSSTTLGHALSYVFSNEGVPHGYSLSSCTTVAHKFNKSMYYERFRKVCQKLK
                     FEQLTLKQSLDEAADVIMPDRGHLDNNPIEVTKQDIVQCLDEIVNKNPLQ"
BASE COUNT          588 a          400 c          355 g          743 t
ORIGIN      
        1 gtatatggtt ctacctccgt ttccttttgc agttctaatt gtgtcaatta tatctatatc
       61 tatctggcga gtccaattag agaactacta gaggttcggg ttcggtggga ttcggaccca
      121 cgacatttta acccaatatg actggttaag agccagacgc tctacctggc tgagctacga
      181 acccataaaa gttgtgtgtt taggttgtgc tatttaaatt aaacttgcct gataatagaa
      241 agcgcactct tgactaactt atactaattg caaaaatgcc taaaaagatg taatgatggc
      301 taaacttact tctgctgaga cactttctga acttgattgt cttttattat tttgataatg
      361 gtttcggaca cagatagttt tgctttttct ttttctttaa gaatttctcg atatgcatcg
      421 agagttatgt aaactggtat tgaacctgtc ccttctaaaa gcgcctttac tctatacaag
      481 ccgttttcaa ttcctcgttc agctattttt ttaagtttta ttttgtcaat aaatccgccc
      541 aatgggccca ttggcatatc ataatctact tttatgcttg ttttggtttc cttttctcct
      601 aagggttcaa aatttactgt gattatccat ctcttaaatg gtccttcgat cattttggcc
      661 acgattttgc ggtgaggaat gtattctgtt gtctcacaat cccactctaa tctcttcccg
      721 tcgaaatctc cgtttattct aaatattgtt ccaactccaa atccattttt tacttctatt
      781 ggtattacat tcaagcccat attctctgga aattgatctg ccatgtgttc aggtcttgca
      841 aaataggtaa aaacttcgct aataggagca ttaatttgca tgctcttatc gatcgtagtc
      901 aatgtaagat tcaggatttg ctgaactgga tttaaaggtt tcttaaccgg ccaatattcc
      961 acatacgtaa tagtagtgtc tgtcttgatg cttaactccc aattttatta ataattccaa
     1021 atcgactcgg gatgtcaata tgacaactaa aagtgaaaga aattcgaatc ccctaactag
     1081 ctatttcaat tgaaagctga ttgcgcatta cgcaagaatt ctgtatatta gtagatttgc
     1141 tttgaatttt cttgaatttc agcgtttgtt tatcaaactg aggtacaagt ctgtataaaa
     1201 aaatgcaatt ccagttttaa tcattctaac cttatctact gatacaaggc aattctgtta
     1261 ctggattgga taataaatca ctgtaatggg ttcttgttta ctatttcatc taaacattgt
     1321 actatatctt gcttggtaac ttcaattgga ttattatcaa gatgtcctct gtcaggcata
     1381 ataacgtctg cggcttcatc aagtgattgc tttagtgtta gttgctcaaa cttcagcttc
     1441 tgacatactt tcctaaatct ctcatagtac attgatttat taaatttatg tgcaactgta
     1501 gtacacgaag ataatgaata gccatgagga actccctcat tagaaaacac ataggataaa
     1561 gcatgaccga gtgtagttga agaatttcca aacccgattc cagaaagcat agcaccgtaa
     1621 ggtaacagtt cttgcttatc attcataatg gcgtcttcta gtatatcaaa agcttcttta
     1681 caaaatagtt tggtaaatgg atttcccagt ttgctatcat atccttcaga tgcttgagct
     1741 aatgcatcac atgcagaatt tctcatgata ttaaatggag tcccaggaag aaaatatgga
     1801 tcgacaatgg cggcgtcagc caagaaggcc tcatcctgta gaagtttttt cttatgatca
     1861 aagcttacca cggcatatgt ggtcatttca gcacctgttc caaaagtagt tggaatgaga
     1921 atctttggaa tgccggttaa ttttccaaga tatttacata catccatcga gctacctccg
     1981 ccaagtccga tatatgcaga aatttgtttg ccttcatatt ttctctttat ttcttctatt
     2041 gtttcaatag caggatcagg tgttatcttg tcgtatattt cgtatt
//
LOCUS       DASPFX010000016         2902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_848504, whole genome shotgun sequence.
ACCESSION   DASPFX010000016 DASPFX010000000
VERSION     DASPFX010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2902
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_848504"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..754
                     /locus_tag="VD694_00295"
     CDS             <1..754
                     /locus_tag="VD694_00295"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helicase C-terminal domain-containing protein"
                     /protein_id="HXW11167.1"
                     /translation="PLDISRYCRAVFEKCSKILIMSATILNPRAFCRSVGLVYDDNEK
                     EVKYIQVRSDFPIQNRPIYALNIAYLNFNNLQLPEIKSSITKTVDNIMTIHRKDKGII
                     HTTSYEQLNFIKENISQENARRLVVTDPEIQREEVIQEHINSIKPTVLISPSLHTGLD
                     LKDELSRFQIVTKVPYPNKSDRWINAKRNLDEEWYYWQTALRLAQAYGRSVRSKEDWA
                     KTYILDSAFGYFLSKNRNILPHWFIQAVKNYN"
     gene            1233..2195
                     /locus_tag="VD694_00300"
     CDS             1233..2195
                     /locus_tag="VD694_00300"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HXW11168.1"
                     /translation="MLESSWVFECLTSEPSNTSEIAKQLSLDFALTYRLLRALASLGF
                     LKEEYDYKFSISKQGELLQKGHPQTLREVILLEEGPEHYAIWKHLPAMIKDGQQNAFL
                     REYGCKAFEYAEKDPEYAEVFSRAMTSYSAAQTTWVLDALSQYDFSQIHHLCDIGGGY
                     GHLLSNLLLKYHHMKGSVLELKSLIKNKELLWSSKMGLDDRCMYIEGDMFKEVSPADA
                     YIMKMILHDWNDEECIKILCNINRSCSYHDGRVFIVEYLITEPEKPHFSKLFDIHMMC
                     WGSGRERTVEEYSSLLEKSGWKYVQTHYPQSGLIGVIEGAKTKE"
     gene            2334..>2902
                     /locus_tag="VD694_00305"
     CDS             2334..>2902
                     /locus_tag="VD694_00305"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HXW11169.1"
                     /translation="MNIGILGSGDVGRRLGDGLIALGHKVKIGTREPGKLDLQQWINN
                     HGQEKAAAGTFAEAASFGDELIFLATLWDGAPNAIKMANVKNFTGKIVIDVTNPLDFS
                     KGMPPRLAVGHTDSAGETVQRLLPESKIVKALNTVGNLQMIHPDFQGGPPTMFVCGND
                     NDAKKTVVDSILTPFGWETIDIGGIEGSR"
BASE COUNT          984 a          481 c          595 g          842 t
ORIGIN      
        1 gcctttggat atctctcgtt attgtagggc tgtatttgaa aagtgttcaa aaatactaat
       61 aatgagtgca accatactta accccagagc attttgtaga agtgttggtc tagtatatga
      121 tgataatgaa aaggaagtaa aatatatcca ggtcagatca gattttccta tccaaaatag
      181 accaatctat gctctcaata ttgcctatct caactttaat aatttacaat tgccggaaat
      241 aaaatcaagt attacaaaga cagtcgacaa tatcatgacg atacacagga aagacaaagg
      301 aataatacat accacatctt atgaacaatt gaactttatt aaggaaaata tatcccaaga
      361 aaatgcacga aggctagtag ttaccgatcc agaaatacaa agagaagaag tgatacaaga
      421 acatatcaat agtataaagc ctacggtcct catttcccct tcactacata ccgggcttga
      481 tttaaaggat gaactttcta gatttcaaat tgtgactaag gttccatatc caaacaagag
      541 tgataggtgg ataaatgcga aaaggaatct ggatgaagaa tggtactatt ggcaaacagc
      601 gttaagatta gcacaagcat atgggagatc tgtaaggtca aaagaagatt gggcaaaaac
      661 atacatctta gattctgctt ttggttattt cctaagtaaa aacagaaata ttttgccaca
      721 ttggtttata caagcagtta aaaattataa ctaaatgtct tctgttgtgg cgtactctgt
      781 ctgttgacat tcaagcatcg gcttttgctt tcaagtccaa tcggcgttaa aagcaggaga
      841 ttctattcta tatcctttgc tattagctaa atctatcaaa tgctagggta aactttaagt
      901 catctatttg aaaccgctta cattggtgtt aacttttaat attcaaaaaa atactgaaag
      961 gtactgatct gactgactgt cgatattatt ctagaagaga cggaatatac gccacgtaaa
     1021 atagtcagag gaacatggtc ttcagtcata aatgcaagaa caataacaga agttgtttaa
     1081 ctaatatctt aacagacctg gaaatgttga acttagtcta tgttattaaa gagtaaatat
     1141 aaacgtcata tttactcttc gtcatataat catgtcagac tatgaaaaaa ctttagaaat
     1201 catatttggt agatggaaga gtcaaacact ctatgctgga gtcaagttgg gtttttgaat
     1261 gtctaacatc agagcccagt aacacatctg agattgcaaa gcaacttagc ctcgattttg
     1321 cgctgactta tagacttcta agggccctag cctccctagg cttcttaaaa gaagaatacg
     1381 attataaatt ttcaattagc aaacaaggtg agctactcca gaagggccat cctcagacat
     1441 taagggaagt aatactgtta gaagaggggc cagaacacta tgcaatctgg aagcatttac
     1501 ctgcaatgat taaagatggc caacagaacg cttttcttcg tgaatatggt tgtaaggcat
     1561 ttgaatacgc tgagaaagat ccagaatatg cagaagtatt cagtcgagct atgaccagtt
     1621 attctgctgc tcaaactact tgggtgttag acgcacttag tcaatatgat ttttctcaaa
     1681 tacatcatct gtgtgacatt ggtggaggat atgggcatct gttgagtaat ctacttctaa
     1741 agtatcatca catgaaaggt agtgtattgg agttaaaatc tctcatcaag aacaaagagt
     1801 tgttgtggtc aagtaaaatg ggacttgatg atcggtgtat gtatatagaa ggagacatgt
     1861 ttaaggaagt ttcccctgca gatgcttata ttatgaaaat gatccttcat gattggaacg
     1921 atgaagaatg tatcaagata ctttgcaata ttaataggtc ctgttcttat cacgatggaa
     1981 gagttttcat tgtcgaatat ttaattacag agccagagaa gccacatttt tcaaaacttt
     2041 ttgatataca tatgatgtgc tggggaagtg ggagagaaag aacagttgaa gaatattctt
     2101 ctttgctaga gaagtcaggc tggaagtatg ttcaaaccca ctacccacag tctggattaa
     2161 ttggagtaat tgaaggtgct aaaacaaagg aataatcttt gcataggaca atcacatatg
     2221 ttaatatgga acaaaattga gaccagaatg ttaattgact attagattga taatgacgat
     2281 atagtggatc aaaggtttaa attctctttt tattttgttt ttgttgataa ccaatgaata
     2341 ttgggatatt aggatctggc gacgtagggc gtagattagg tgatggtctg attgcacttg
     2401 ggcataaagt aaaaatcgga acccgagaac ctggtaaact agaccttcaa cagtggatca
     2461 ataatcatgg acaagaaaag gcagctgcag ggacatttgc tgaagcagca tcatttggtg
     2521 atgagctgat atttcttgca accttgtggg acggggcacc caatgccata aaaatggcta
     2581 atgtaaagaa tttcactggt aaaattgtta ttgatgtcac aaatcccctg gatttttcga
     2641 agggcatgcc tccaagactc gccgttggtc ataccgattc tgcaggcgag acagttcaac
     2701 gtctcttacc cgaatcgaag atagtaaaag cgctcaatac tgttggtaac ctccaaatga
     2761 tccatcccga ctttcaaggt ggacccccta cgatgtttgt gtgtggaaat gataatgatg
     2821 caaagaagac agtagtggac agtattctca caccattcgg ttgggaaaca atagatatag
     2881 gaggcataga ggggtccaga tt
//
LOCUS       DASPFX010000017         2226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2130465, whole genome shotgun sequence.
ACCESSION   DASPFX010000017 DASPFX010000000
VERSION     DASPFX010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2130465"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..404)
                     /locus_tag="VD694_00310"
     CDS             complement(249..404)
                     /locus_tag="VD694_00310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11170.1"
                     /translation="MLVKQLFLEKRMQLAVENLDFRARRSKAEQGKRLGDIIGLSEGQ
                     LLLLDIA"
     gene            complement(427..924)
                     /locus_tag="VD694_00315"
     CDS             complement(427..924)
                     /locus_tag="VD694_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11171.1"
                     /translation="MRSKAVDPNTGLRNPSIADYNIPLMMPKEWRIKFNPQIFEPSEI
                     RHNITPPENSFIFVTNWQQFELKKDRSSIWEDLTGQEIGDQPRGEFLADFLSVYPSIV
                     IMNDEAHHVHAGKAGSNEELVWRKFIRVMRQRLIDRHKENNGLFIQYFSATPFFGSGT
                     QKEYL"
     gene            complement(863..1339)
                     /locus_tag="VD694_00320"
     CDS             complement(863..1339)
                     /locus_tag="VD694_00320"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HXW11172.1"
                     /translation="MIPHHNPYLLFRYWFKHDDESSEKFHVCQQRAIETIVYCHEILQ
                     VRNLEDLYSKVAPDIPVQSKAILDEIKKDDFAKYCLKMATGTGKTWVLLALLVWQYFN
                     AKNGEKPHGAAGESKQWYSDRFLVVAPGREVLDRLLDAFKGRRSKYWSKEPINSRL"
     gene            complement(1409..>2226)
                     /locus_tag="VD694_00325"
     CDS             complement(1409..>2226)
                     /locus_tag="VD694_00325"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HXW11173.1"
                     /translation="VQYKWGQQVLEWRKWHGDEIVMDAGCGSGLLTRQLAKKVPKGKV
                     YAVDIDSSMVRQARKNLQLFDNVEIIQSSFTDIVLPQRLDVIFSNSALHWLQDHRKVF
                     QTFWDMLKPMNKDINDKDTTINNNNIGNISCDQLLIQCGGYGNLQQIITLLERITQLD
                     QFRAYFTNWRQSWYFAKPDDTDKLLKEIGYVNSRVNLNRDCVNLPNRDIYSKFAKTVI
                     AKPYLERLSPDIGDNLKTTFLELFLDEVEKHSNEPKTRWLLDFVRLNIVARRP"
BASE COUNT          633 a          464 c          362 g          767 t
ORIGIN      
        1 agagcagctt cggggtcctt gaatatatga acttcaaata gaccgcttgc ttctagtcct
       61 acctttactg tcaaagcaat atcgggatca tcatccactg ccaaaatctt tcttttacta
      121 tttctattgc tattttggcc agacaactct tctttttggt taccaaaaac tagaatataa
      181 gatctattgg cataacctgt aagaatctaa caaaccaact agtctccggt tttcattttt
      241 attcctgctc aggctatatc taacaagagc aattgacctt cagataaacc tatgatatca
      301 cctagtcttt ttccttgctc tgctttactt cttctagccc tgaaatccaa gttttctacg
      361 gctaattgca ttcttttctc aagaaacaat tgcttgacca gcattgcatg catggcctta
      421 actaggtcat aaatattcct tctgtgttcc actaccaaaa aaaggagtag cagaaaagta
      481 ttgaataaat aaaccattat tttctttgtg tcggtctatt aatctttggc gcattacccg
      541 aataaatttc ctccaaacta attcctcatt gcttcctgcc ttacccgcat gtacatgatg
      601 cgcttcatca ttcataatca ctatgctggg atacacagag aggaagtctg ctagaaactc
      661 accccttggt tgatcaccta tttcttgccc cgttaagtct tcccatatgg aactacggtc
      721 tttcttcaat tcaaattgct gccagttagt gacaaatatg aacgagtttt ctggcggagt
      781 tatgttgtgc cttatttcag agggctcaaa tatctgtggg ttaaatttta ttctccattc
      841 ttttggcatc attagaggaa tattatagtc tgctattgat gggttcctta gaccagtatt
      901 tggatctacg gcctttgaac gcatctaata atctatccaa cacttcacga cccggtgcta
      961 ctactaagaa tctatcagaa taccattgtt tcgactctcc cgctgcgccg tggggttttt
     1021 ctccattctt tgcattaaaa tattgccaaa ctaacaaagc caaaagtacc catgttttac
     1081 cggttcctgt ggccattttg aggcagtatt tagcaaaatc atcctttttt atttcatcaa
     1141 ggattgcttt actttgaact gggatatctg gagcgacttt tgaatataaa tcttcgaggt
     1201 ttctaacctg aaggatctca tgacaatata caattgtttc aattgctctt tgttgacata
     1261 catgaaattt ctcagatgat tcatcatcat gtttgaacca atacctaaaa agcagatatg
     1321 ggttatgatg tggtatcaca gaaatattga gaacaaatat ctgaaataat gctttgagat
     1381 attaatcaac aagatataga cccaatggtt agggtcttcg agcaacaatg tttaatctaa
     1441 caaaatccaa gagccagcgt gttttcggtt cgttactgtg cttttcgact tcatctaaaa
     1501 acaattctaa gaaggtagtc ttcaagttgt caccgatatc aggggacaga cgttctagat
     1561 aaggtttcgc tatcaccgtt tttgcaaatt tggaatagat gtcccgattt ggaagattca
     1621 cacaatctct gtttaggtta accctactgt ttacataacc tatttctttt agcaatttat
     1681 ctgtatcatc aggcttggca aaataccatg attgtctcca atttgtaaag tatgctctga
     1741 attgatctag ttgggtaatt cgttctaata atgtgatgat ttgttgcaga tttccatatc
     1801 ctccacactg gatcaacaat tggtcacagc tgatattacc aatgttatta ttattgatag
     1861 ttgtatcttt atcgttaata tctttattca ttggttttag catatcccaa aaagtctgaa
     1921 acacttttct gtggtcttgt agccagtgaa gagcagaatt agaaaaaatg acatctaacc
     1981 tttgtggaag tactatatct gtgaaactag attgtataat ttcaacatta tcaaacaatt
     2041 gaagattctt tcttgcctgt cttaccatac tagaatcaat atcaacagca tagacctttc
     2101 cttttggaac ttttttggct aattgtcttg tgagtaagcc tgatccacac cctgcgtcca
     2161 taacaatttc gtctccatgc cactttcgcc actcaagtac ctgttgaccc catttatact
     2221 gaacta
//
LOCUS       DASPFX010000018         2339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1557639, whole genome shotgun sequence.
ACCESSION   DASPFX010000018 DASPFX010000000
VERSION     DASPFX010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1557639"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..548
                     /locus_tag="VD694_00330"
     CDS             240..548
                     /locus_tag="VD694_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HXW11174.1"
                     /translation="MAKVVVGKTSEVQEGKLMHITAGGKEIVVTKLDGNYYAMDNVCT
                     HAGADLHEGELNNNVLTCPWHGAKWDVKTGNLISFPQKLKPLQSQKVLIENDTLYVEI
                     "
     gene            1039..2229
                     /gene="mpgS"
                     /locus_tag="VD694_00335"
     CDS             1039..2229
                     /gene="mpgS"
                     /locus_tag="VD694_00335"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HXW11175.1"
                     /translation="MKLDVPRFTERFGSVSLHGVQRVYELDSGHKNKNTKTESEIIRS
                     IDDEIISKIESEMAIVIPIKGERLKLLEGVLSGIPHDCLTIIVSNSPREPIDRYKLEK
                     QAFEQFNRFTEKKSVIIHQKDPGLVKALEGVEYPDLFDSEGKIRNGKGEGMFIGMLLS
                     KMMGKKYVGFVDSDNYVPGAVNEYAKIFSSGIALSTTPYTMVRVSWIYKPKISDSGVR
                     FSKLGRVSEMTNQFLNLMISYYTGFETEVIRTGNSGEHCMSVQLAELLTYSSGFSIEP
                     YEIVNLLEQFGGITPPEHKDTMEKGVEVMQIETRNPHFHEEKGDLHIKEMFSQGWGSI
                     FHSKLCHPELREKLKAELVSRGILDKVKEPPQLPKMRPFIDIDILKFEKILKEQTNSL
                     TIFE"
BASE COUNT          821 a          329 c          459 g          730 t
ORIGIN      
        1 tgaaatggat attttccctc cagcattttt agtttttttc tagtaggctt cttgatgtct
       61 atccaggtca gactcttgtt ggtaattgac tcaagctgat cagaaaattc aatatttgtc
      121 atctggcctc attcttgatt aaccttaaaa agttgaaata ttgtatatta agatatctaa
      181 atattgcata aaattttgaa aaacttaggt taaaataata cagaactatc tttatcccta
      241 tggcgaaggt cgtcgttgga aaaacttcag aagttcaaga gggtaaattg atgcatatta
      301 cggcaggtgg aaaagaaata gtagtaacaa agttggatgg aaattattat gcaatggata
      361 atgtttgcac tcacgcgggg gccgaccttc atgaaggaga attaaataat aacgtattga
      421 cttgcccttg gcatggtgca aaatgggatg ttaaaacagg caatttaatc tcatttccac
      481 aaaaattgaa gccattgcag agtcaaaagg ttttgatcga aaacgataca ttgtatgtag
      541 aaatataggt ttaggaatta tcttgaaatt atatttccat gtacttttca aaaatatgtt
      601 gagagtaatt ccataaagta caaacaattt tgacgattgc attagtttac cagtatgaga
      661 tacaatagca acaattctac gcctttcaat aagagtttga atagaaagta agattgtatg
      721 atggttttta atatttacat ttgccttgta ctgatgaccg cccatgggag atctttggac
      781 attttgaaaa attagcgcat atgaatggat tctatatcaa acacgaattt ttgcgctatt
      841 gtaattagca tcaaatgcat tgaattggtg aataaatgac aatttacaac ttaaccaagt
      901 tgatcgttac tcttgtattc tcagataatc tgcccaatat gaaatccggt tgttgggatt
      961 atatattttt gggcaagaca aaaaaaatta ttgatttata tacacttgca ataaatatgg
     1021 cataactgaa ttaaagatat gaaacttgat gttccgagat ttacagaaag atttggatca
     1081 gtaagtctac atggagtgca acgggtgtat gaactagatt ctggacataa gaacaaaaat
     1141 acaaaaacag aatctgagat tattcgttca attgatgatg aaattatttc caaaatagaa
     1201 tccgaaatgg caattgtaat tcctataaaa ggagaacgtt taaagctttt agaaggagta
     1261 ttgagtggta taccacatga ttgtttgact ataattgtat caaatagccc cagagaacca
     1321 attgacagat acaagttgga aaaacaggca tttgaacaat ttaatagatt tactgaaaaa
     1381 aaatcagtaa taattcatca aaaggatcct ggccttgtaa aggcactaga aggagttgaa
     1441 tatccagacc tttttgactc ggagggaaaa atacgaaatg gtaagggaga gggaatgttc
     1501 attggtatgt tgctttcgaa aatgatggga aaaaaatacg taggatttgt tgattctgat
     1561 aattatgttc caggagcagt taacgaatat gcaaaaatat tttcgtcggg gattgcgcta
     1621 tctactacgc cctataccat ggttcgtgtg tcttggatat acaaaccgaa aatttccgat
     1681 tcaggggtac gattttccaa gttgggtaga gtttcagaga tgacaaatca atttttgaat
     1741 ttaatgatat cgtattatac tggatttgaa acagaagtta tcagaacagg gaattctgga
     1801 gaacattgca tgtcagttca attggctgaa ttactaacct actcatcagg tttttcaatc
     1861 gaaccatatg aaattgttaa tttgttagaa cagtttggtg gaattactcc accagagcat
     1921 aaggatacta tggagaaggg agtggaagta atgcaaatag agacacgtaa cccacatttc
     1981 catgaagaga agggggattt acacattaaa gagatgttct ctcaaggttg gggaagtatt
     2041 tttcatagca agctgtgtca tccggaattg cgagaaaaat tgaaggctga gcttgtttca
     2101 agagggatat tggataaagt aaaagaacct ccacaattac caaaaatgag accgttcata
     2161 gatattgata ttttgaaatt tgaaaaaatt ctaaaggaac aaactaatag ccttactatt
     2221 ttcgagtaag agttttttta aacattctaa aataatgcaa tgtgatctta gacactacaa
     2281 gaagtacaat ccggttaatt gtcaattata tcgcaggtct cgtttttcat cattttgcg
//
LOCUS       DASPFX010000019         3378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_704247, whole genome shotgun sequence.
ACCESSION   DASPFX010000019 DASPFX010000000
VERSION     DASPFX010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_704247"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VD694_00340"
     CDS             <1..215
                     /locus_tag="VD694_00340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11176.1"
                     /translation="ILITMWSVNLFDIQLIMTGGGPLFSSTTASLYMYRQAFEFGLLS
                     KGAASGIILILINLTVAIVYVKFLRR"
     gene            220..1143
                     /locus_tag="VD694_00345"
     CDS             220..1143
                     /locus_tag="VD694_00345"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HXW11177.1"
                     /translation="MSPKMKQDESKNGNHRFTRYFRSADKTNYESTRSTLGERLILYG
                     LIAVFLFITFSPIVWIFSTSLKQNQEAMSFPPKLIPEDPTLENFVFVLTDPALVKSLS
                     NSFIVSIGSTLLSVTVSALGGYAFARFEFKGKNLIISIILGLFMIPVVINIVPLYIML
                     ADLGLLNSLFALMLTFQILIIPLNILLLKSYFETIPKDLEESALLDGCSRLGVLRRIT
                     IPLSMPGFAIAAVLSFRFAWNEFILAVVLANHPDSTVFQVALYQFISLYRIDWGYLSA
                     GITIAIIPVLVLMLSFQKNMVRGLTLGAIRG"
     gene            complement(1543..1863)
                     /locus_tag="VD694_00350"
     CDS             complement(1543..1863)
                     /locus_tag="VD694_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11178.1"
                     /translation="MSWTDMYNQYVKSYESMNEFYNDYVNKMKKLNDLFEEASRNLSR
                     MNDLYRDLVKVNENMYNLYSQYLSHFQKLNQQWIESVWGPFLAKVQVEGKEEIKSTAE
                     EKKK"
     gene            2113..2490
                     /locus_tag="VD694_00355"
     CDS             2113..2490
                     /locus_tag="VD694_00355"
                     /inference="COORDINATES: protein motif:HMM:NF019401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1622 domain-containing protein"
                     /protein_id="HXW11179.1"
                     /translation="MGSPEIFHIIVEYIVVIIEIIVAILVSALVIITLAKLVKLLLSK
                     IRKEQRQVYVHKIVARMLRGLLIALDFLIAADLLQTILEPTLEETAVFALIVVLRILL
                     SWSLSKEIEMGAKEELHTHKQDI"
     gene            complement(2744..>3378)
                     /locus_tag="VD694_00360"
     CDS             complement(2744..>3378)
                     /locus_tag="VD694_00360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11180.1"
                     /translation="AKTYSTVTANGYRKGMRYYWDGGLMTNTPLLQLVILHRQYWWRV
                     RGLKDTVPRLGICVINLHPKKQTEIPTDRDGVINRNNDITFSDRTQQEETMLLLISDY
                     VDLTRELLKVAEEKGVDKNFLSNLLNRKTNFHGEFLKPRRFQDILEGRFQIDEIIRVN
                     RENDLDTISNKTFDFSSQTIKLLLERGYNDALDGFEEYKRSQASKTADSN"
BASE COUNT          971 a          646 c          595 g         1166 t
ORIGIN      
        1 ttatactaat tactatgtgg tcagtaaatc tctttgatat acaattgata atgaccggtg
       61 gaggaccatt gttttcaagt actacagcat cgctatatat gtacaggcag gcgtttgaat
      121 ttggattgct atctaagggt gctgcttcag gtattatcct gatcttgata aatttaacag
      181 tagcgatcgt atatgtaaaa tttctaagga gataaagtat tgagcccaaa aatgaaacaa
      241 gacgaaagca aaaacggaaa tcacagattt actcgctatt ttaggtcagc tgacaaaact
      301 aactacgaaa gcacaagatc aactttaggt gagaggttga tactttatgg cttaatagct
      361 gtttttcttt ttattacttt ctctccaata gtatggatat tttctacctc attaaagcaa
      421 aatcaagagg caatgagttt tcctcctaag ttaattccag aagaccctac tctcgagaat
      481 tttgtattcg tattgactga tcctgcccta gtcaagagtt tatcaaatag ctttatcgta
      541 agcataggaa gtactctctt aagtgtgaca gttagcgcac tagggggcta cgcatttgca
      601 cgatttgaat tcaaaggtaa aaacctgatc atcagtatca ttctagggct ttttatgatt
      661 cccgtcgtta ttaacatagt acctctttac ataatgttgg cggatctagg cttactaaac
      721 tctttatttg cactgatgtt aacctttcaa atactcatta ttcctctgaa tatactgttg
      781 ctgaagagct atttcgaaac tatacccaaa gatcttgagg agagcgctct actagacgga
      841 tgctcaaggt taggtgtact acgtagaatc actatccctc tttcaatgcc agggtttgct
      901 atcgcagccg ttctttcctt tagatttgca tggaacgaat tcattttagc tgtggtgctt
      961 gcaaatcatc ctgattcaac agtattccag gttgcattgt accaatttat ctcactgtat
     1021 aggattgatt gggggtattt aagtgctgga ataacgattg ctataatccc cgtactagtg
     1081 ttaatgctca gtttccagaa aaatatggtc agagggctaa cattgggagc aattagaggg
     1141 tagttagttg tttatgaata taatccatat tgctgaacaa tgttgcacat gtatgttcct
     1201 ttattgcgat aatactaata ataaacctga attacatcct gatatctaca tcagcaacat
     1261 tgtggtacaa tttggttctt catattggca tacctagaag gtctaagtat ttattatgta
     1321 aatttaagtc ctcagcctgt tttgaccgac gaaatataga aaaaaatatc agtcattgaa
     1381 gctacgctga ttgatgcgta ttaggtaact gaagagtctg gttaaatagt acattcagta
     1441 tcacaacttt ttcccccgct tactttcgtg ttcctatttt attttttgct ttttctttct
     1501 tccttgagtt tcgttggggt ttttgtcctt ttcgatgtaa tcttatttct tcttttcttc
     1561 cgctgtactc tttatctctt ccttcccctc cacttgtact tttgctaaaa aagggcccca
     1621 aacagactct atccactgtt gatttaattt ctggaaatga ctgaggtact ggctgtataa
     1681 attgtacata ttttcattaa ctttaaccaa atctcgatat aggtcattca ttctactcaa
     1741 gtttcgtgac gcttcttcga acaagtcgtt aagctttttc attttattga catagtcatt
     1801 gtagaattca ttcatgcttt cgtaactttt tacatactgg ttgtacatat cagtccaaga
     1861 catacacatt gttcacctat acaaggtaac gtcatcggat tacttatggc ttgtgtttta
     1921 attttgcctc agtttatggc tggcgaagaa gtaggttgaa tccgttggca tttcaggccg
     1981 ttagcattag ttgaaatttg atcggatcaa gtatagattc aaaagttagt gatctactcc
     2041 cagttatgat atcaagagtc gaatttaata aagatataag tattcacgcc ataaagtaag
     2101 tcctaaacct tgttgggaag tcctgaaatt tttcacataa tcgtcgaata catagtagtc
     2161 attatcgaaa taattgttgc aatccttgta tctgcattag ttattattac attagctaag
     2221 ttagtcaagt tgcttctctc taaaataagg aaggagcagc gacaggtgta tgttcacaaa
     2281 attgtggcaa gaatgttaag gggtcttctc atcgcattag atttcttgat cgccgctgat
     2341 ttactccaga ctattttaga gcctacacta gaagaaactg cagtgtttgc attgatcgta
     2401 gtgctaagaa tactactaag ttggtcactc tcaaaagaaa tagagatggg tgctaaggag
     2461 gaattgcata cacataaaca agatatttga acagttcttc taacaagtta ttttcactgt
     2521 agctctagac aacaacatta aatcccaagt tggatttgat atgaaatatg gtattgatct
     2581 aatgtgcgta aatggtgtct gctcattgca gtccacctta ttagttttct tatacagaaa
     2641 tcattcattt ggaactgcca tcatcctaca cagtctacat gtcaagatca ttaattgaat
     2701 tcacattgat acgcctcaaa cgcatcattg ttagatctac ttcttaatta ctatctgccg
     2761 ttttgctagc ctgacttcgc ttatactctt caaatccatc tagagcatca ttgtatcctc
     2821 gttcaagcaa gagctttatg gtttgggaag agaaatcaaa ggtcttgtta gaaatagtat
     2881 caagatcgtt ctccctgtta acgcgtatta tttcatcaat ctgaaacctt ccttcaagta
     2941 tgtcctggaa tcgtcttggc ttcaaaaact caccatggaa atttgttttc cggttcagga
     3001 gatttgatag aaagttcttg tccacccctt tttcctctgc aacttttaat agctcccttg
     3061 tcagatcaac ataatcagat attagcaaga gcatggtctc ctcttgctgt gttctatctg
     3121 aaaatgttat atcattattc ctattgataa caccatccct atcagtagga atctctgtct
     3181 gttttttagg atgtaaattt attacgcaga tacccaatcg aggaacggta tcttttaatc
     3241 ctctcaccct ccaccaatat tgcctatgta atataactaa ctgcaatagc ggagtattag
     3301 tcataaggcc cccatcccaa taataacgca tacctttcct gtaaccgttg gcggtcacag
     3361 tactgtacgt cttagcgt
//
LOCUS       DASPFX010000020         8919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1272457, whole genome shotgun sequence.
ACCESSION   DASPFX010000020 DASPFX010000000
VERSION     DASPFX010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8919
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1272457"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..713)
                     /locus_tag="VD694_00365"
     CDS             complement(<1..713)
                     /locus_tag="VD694_00365"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HXW11181.1"
                     /translation="MAPDLPQWGIDPVPPKHRVLGGFHYFILWSSLGVGLLVFSAGSF
                     LSDAPFYYALLAIIIGSIAGSVLLSMAGKIGSDNAVPSIIGIRSAFGLYGSYLAAVLN
                     IIQLIGWTTFEISILSKAAEQLTNTNVTFVWNILFGVVIILLGIFGPLFIVKQWLSKF
                     AIWIVYASSAIILITLLLHNLPNVLSEESNNMSFFVALDIVIAMPISWMPLVSDYNRF
                     AKSSKGAFIGTLLGFSITN"
     gene            complement(1036..1527)
                     /locus_tag="VD694_00370"
     CDS             complement(1036..1527)
                     /locus_tag="VD694_00370"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HXW11182.1"
                     /translation="MEKQNNNLTNFISETAKIGKNVKVWHFSYIGNNSEIGDNVSIGS
                     LVHIDYNVKIGENTRIEGSVYIPPLTTIGKNVFIGPCAAFTNDPYPMSPKMTGVVVED
                     GAIIGGRAVFKAGVTIGKNSVIAMGAVVTKDVPPNVVVMGHPATIRYSREEYDLKKKK
                     WNS"
     gene            complement(1603..1890)
                     /locus_tag="VD694_00375"
     CDS             complement(1603..1890)
                     /locus_tag="VD694_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HXW11183.1"
                     /translation="MRRSMLDILACPIDKYYPLELIEIDTVEDKTINESVIKEGVLFC
                     SQCSRFYPIIEEIPIMLPDELRDKEKDIQFLQKWHEKIPSKIIKNGHPWHL"
     gene            complement(1922..2905)
                     /locus_tag="VD694_00380"
     CDS             complement(1922..2905)
                     /locus_tag="VD694_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HXW11184.1"
                     /translation="MANTKLVEKKNSGLKIGVIGVGGWGKNHVRVLYNMGILGAVCDL
                     SPERAREIAEKYDTKFYSSMSDFFSNERELDACLVCTPTKSHLSVVKEVIQNGCHVFV
                     EKPLSFSTRECEEMTELADKAHVVLTCGYVERFNPAVQDLKNIIQKQLYGDLLMMEFH
                     RENRMPLHIKDVGVIYDTSVHDIDTAMYLFGKGPKMVFARAGKKFHTFEDFATIMLGF
                     EDQKVAIIASNWVTPRKVRTFSAVCTEGTVNGDFITQEIRIDHGDATIIPRRQQFQEP
                     LVLELQSFVDVIDGRRKQPVVTSIEATNVTKVAEAALLSSETGSPIYLELK"
     gene            complement(2884..3801)
                     /locus_tag="VD694_00385"
     CDS             complement(2884..3801)
                     /locus_tag="VD694_00385"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HXW11185.1"
                     /translation="MKEKGVDFVWFDGQHLKWEEAKVPIFVHALHYGTAVFEGIRAYS
                     SDDNLYIFRLKEHMERLHKSANVYSFTTKFSVDELCKATVELIRKNSIRRSCYIRPLT
                     FVGLHGIDLNVSKNSPTHTTIIIFPFAKYFKGDGISACISTWRRIDDQSIPPMAKASG
                     NYLNSVLATQECRRNGYDESILLDRNGNVSEASGENIFVVRNEKLHTPQLSDSILEGI
                     TRNTAIMIAKELGYEVVERPISRTELYLADEIFLTGTAAEIIAITKMDGNIVGNGREG
                     SITKSIRENYENIVTGKSEKFMGWLTPSW"
     gene            complement(3860..4576)
                     /locus_tag="VD694_00390"
     CDS             complement(3860..4576)
                     /locus_tag="VD694_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11186.1"
                     /translation="MEKIAALYLAHLNPVTNSHESIISQLAKDYHVYIFPVVFLKHGR
                     EVNTRTFPFSYELRKKMLLGLFGDQNNIEILPNYKFMSPFIKYLPPIFSPFSWSLRSG
                     VLRDIAEDRFISYTGDKAERIALRFYNLHPIKAKRLEISSSDVKGLLYQEALKKLGKD
                     NFTTNLKNDMHNSNHNDDLNRNVRNEVPESSAESWQNMVPKNVADIIVENWKIIEKYA
                     QSKDKTIKIFGMKFPEEGIL"
     gene            complement(4623..4934)
                     /locus_tag="VD694_00395"
     CDS             complement(4623..4934)
                     /locus_tag="VD694_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HXW11187.1"
                     /translation="MSEVQQNTQPQRDGPRDSIYIGKKPLMAYVTSTLIQLANQPSVT
                     IKARGLSIGRAVDVSQIILKRMENAGYAIGDVRIGSETLQAEDGRTRNVSTIEIEVKK
                     A"
     gene            5118..5627
                     /locus_tag="VD694_00400"
     CDS             5118..5627
                     /locus_tag="VD694_00400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11188.1"
                     /translation="MKKNFKDETNPEDKSRESITDKESNLQDEELAPEIPKAYNNRPI
                     SSEKKFRKSNSNVKIEDYDLIVNSLRDATNSFMDVIYSLGKKAQEFRDKAEETFTVGA
                     RRDAKDIQALGDYVENVIKGFEDTMAEIKMRNYGDEEKLLKGYKKLLDEQINLINARI
                     ELVKRLKSR"
     gene            5827..6444
                     /locus_tag="VD694_00405"
     CDS             5827..6444
                     /locus_tag="VD694_00405"
                     /inference="COORDINATES: protein motif:HMM:NF039195.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HXW11189.1"
                     /translation="MTSIFNDINRNSVSIALSIFAVFSIFLIIDYAEHNLAFGLFHEN
                     TIIPIAVESEFLTYDDLITGFSIKYPQDWDRAQHLDKSVTFHAPKESNSDINPADLGI
                     MVIQVGSNTTLTSITQNQLDTLKKLYPDFQIHESVETVFLGHPAHMIIFTATDNTETM
                     RKAMQIWFKEDTKAYLVTYKSDNERFSKYLPTIDRMLNTFYTYKK"
     gene            complement(6525..8597)
                     /locus_tag="VD694_00410"
     CDS             complement(6525..8597)
                     /locus_tag="VD694_00410"
                     /inference="COORDINATES: protein motif:HMM:NF019313.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HXW11190.1"
                     /translation="MSAEDELFQRGLILTDDIANDPILDFNLYANAIANIVRNSQPKF
                     TIGIFGDWGTGKTTLINAVDKILQSDKDSIRIRLEAWRYKQEQFPLVSLFKSIAFALP
                     NEKQFEVLKHKLETSAINFLKKTPDILTSIISKYVSEEDEISNEMLDTFKKELNSKIQ
                     LIAELDRDTVYFDGLDEIKKEIRNLRLDNPAFRIIVFVDDLDKCSPKKALEILELIRI
                     FHDIEGFVYIIGISHDMIIKLSDIENNKTSIDGEHFIKKLIQIPITLPRWSNKDIVNL
                     VKDLIKNGMIHDKFKDLIEKNIDLISVAIDNNPREIKRFLNNFFVAHEIFSGKKNFEA
                     KELIFSGKKNFEAKELLIIQAIHLRWTKFYNILVKSDESFIKELDKYLKMDDETRLKN
                     LDLYEGKKEERDIKVWKVLRDFKTDSGLWNFLIQNSDILKNVRDWNIYRHAIETSAEP
                     TGTHRKAINYEAIKLLQSGKINEFNDKRASEFKNLSIREADLRDADLRDADLMGANLS
                     GSDIDGADLMGANLSGADLMGANLSGARLVGTNLGGADLVGARLWGANLVSTRLWGAN
                     LRDAHLVGAKLVGANLGGARLVGANLGGARLVGVDLGGADLKHTELTNSIIINPNYES
                     LTVNSSTEFNNATIDDPQFIDYIAQYTRNVPQKIKDKKKLRRELARKGVSEENIEDLL
                     TISRLPEE"
BASE COUNT         2792 a         1739 c         1377 g         3011 t
ORIGIN      
        1 atatttgtaa tagaaaatcc caacaaagtt ccaataaagg cgcccttgct tgactttgca
       61 aacctattat aatctgaaac aagaggcatc caagaaatag gcatagcaat tacaatatcc
      121 aatgcaacaa aaaatgacat attgttgctt tcttcagata gcacgtttgg aagattatga
      181 agtagtaagg taatcaaaat tattgctgat gaagcgtaaa ctatccatat cgcaaatttt
      241 gatagccact gttttactat aaatagtggt ccaaatatac caagtagaat aataacaact
      301 ccaaacaaga tattccaaac aaaagtaacg ttggtatttg tcaattgttc agcagctttt
      361 gagagtatcg aaatttcaaa tgtagtccaa ccaataagtt gtataatatt tagtacagcg
      421 gctagatatg atccgtacag tccaaaagct gaccgtattc caataataga cggaactgca
      481 ttatcgctac ctatttttcc tgccattgat aacagtacgg agcctgcaat tgaaccaatt
      541 atgattgcaa gcaatgcgta atagaagggt gcatcagaca agaaggatcc agcagaaaaa
      601 actagcaagc caacaccaag actggaccac aagataaagt aatgaaaacc cccaagaact
      661 ctatgttttg gaggaactgg atctattccc cattgtggca agtcgggggc catatcatat
      721 tgattacaaa tttctataaa tataaatcaa aaacaaataa tttccaaatt cgtatttcat
      781 aaataatcgc gtaaataata aattaaaaaa ataaacaaat atcataaaat ttttacacaa
      841 tgttaatatg tgaaaacgac gtattatata tgatgtctat ttgtgttatg tgtcttaaaa
      901 catatgatga aaaggaagta aatcttcaac ggaaaattgt aaacgatgaa gatttttgta
      961 atgaatgttg gatcgaagta atgaatattg aataattcca tattacagtt ttgatttgat
     1021 cacatgtgta tgaaactagg aattccattt cttcttcttt agatcatatt cctcccttga
     1081 atatcttata gttgctgggt ggcccattac gacaacattt ggaggcacat cctttgttac
     1141 aaccgccccc attgcgatta cactattttt tccaatagtt acccccgcct taaatacggc
     1201 tctacctcca attatcgctc cgtcttctac gacaactccc gtcattttcg ggctcattgg
     1261 ataagggtcg tttgtaaatg ccgcacaagg acctatgaat acattttttc caatcgtagt
     1321 tagcggtgga atatagacgg acccctcaat tctagtattc tcaccaattt ttacgttata
     1381 atctatatga actagtgaac caattgaaac attatcccct atctcgctgt tgttaccaat
     1441 gtagctgaaa tgccaaactt ttacattctt tcctattttt gcagtttcag aaataaagtt
     1501 tgtcaaatta ttattttgtt tttccatact ccatcttctc tatgtttaaa ctcatattat
     1561 atctatattc aattcatgtt gcttcataat tctcatattt cattacaaat gccaagggtg
     1621 tccatttttt atgattttac tgggaatttt ttcatgccac ttttgtaaaa actggatatc
     1681 cttttcttta tctcgcagtt cgtctggtaa cataattgga atttcttcaa tgatgggata
     1741 aaaccttgaa cactgcgagc aaaatagaac tccttctttt atcacacttt cattaattgt
     1801 tttatcttcc acagtatcaa tttcaattaa ttccaatgga tagtatttat ctatgggaca
     1861 tgctaggatg tccagcatcg atcgtctcat gataatttct tggattgtac atcttattat
     1921 ttcatttcaa ttctaaataa attggtgaac ctgtttcact agagagaagt gctgcttcag
     1981 ctacttttgt cacatttgta gcttctatag aagtaacaac tggttgtttc ctcctgccat
     2041 caataacatc aacaaaactc tgcaattcta ggacaagagg ttcctgaaac tgttgtcttc
     2101 tgggaatgat ggtagcatcg ccatgatcaa ttctaatttc ctgtgtaata aaatcaccat
     2161 tcaccgtgcc ttcagtacac acagcagaaa atgttctaac cttccttggg gtgacccaat
     2221 ttgatgcaat tatagcaacc ttctgatcct cgaatccaag cattattgtt gcaaaatctt
     2281 caaacgtgtg aaattttttt ccagcccttg caaaaaccat tttcggaccc ttaccgaaaa
     2341 gatacatcgc agtatcaata tcatgaactg atgtatcata tattacacct acatccttga
     2401 tatgcaaggg cattctattt tctctatgga attccatcat caaaagatca ccgtataact
     2461 gcttttgaat tatgttcttc aaatcctgaa cagcaggatt aaatctttca acgtaaccac
     2521 atgtcaagac aacatgggct ttgtcggcta gttcagtcat ttcttcacat tctctagttg
     2581 aaaatgaaag tggtttttct acaaatacgt gacagccgtt ttgaattact tcctttacta
     2641 ctgacagatg tgatttagta ggcgtacaca ccagacaggc atccaattca cgttcattgg
     2701 aaaaaaaatc actcatcgaa gaataaaatt ttgtatcata tttttctgct atttctcttg
     2761 cacgctctgg agataaatca caaacagctc caaggatacc catattgtag agaacccgaa
     2821 catgattctt tccccaacca ccgactccaa ttactccgat ttttagcccg ctgttttttt
     2881 tctctaccaa cttggtgtta gccatcccat gaatttttca gactttcctg tcacgatatt
     2941 ttcgtaattc tctcttatgc tttttgtaat tgaaccttct cttccatttc caactatatt
     3001 tccatccatc tttgtgatcg caattatttc agcggctgtt cctgtaagaa atatctcatc
     3061 agcaagatac aattctgtcc tggaaatagg acgttcaaca acttcatatc ccaactcctt
     3121 tgctatcatt atagcagtat ttcttgtaat tccttccagt atcgaatctg ataactgggg
     3181 ggtgtgaagt ttttcatttc taactacaaa aatattctct ccagacgctt cactgacatt
     3241 tccattcctg tcaagtagta tggattcgtc gtatccattt cgcctgcact cttgtgtagc
     3301 taatacagaa ttaagataat taccagaagc ttttgccatt ggaggaatgg attgatcgtc
     3361 aattcttctc caagtggaaa tacatgcgga gattccatca cccttgaaat attttgcaaa
     3421 tggaaagata atgattgtcg tatgtgttgg tgaattcttg cttacattta gatctattcc
     3481 atgtagaccg acaaatgtta acggccgtat ataacatgac cgtcttatag agttctttcg
     3541 gattaattct acagtagctt tgcaaagttc atcaacagaa aattttgttg taaaggagta
     3601 gacattagct gatttatgaa gtctttccat atgttccttg agtctaaata tgtacaagtt
     3661 gtcatcagat gaatatgccc ggatgccttc aaagactgct gttccatagt gaagtgcatg
     3721 tacaaagatt ggaactttag cctcttccca tttaagatgt tgtccatcga accagacaaa
     3781 atctacaccc ttttccttca taatggcaag tcaattattg gataataaaa gtattcaaat
     3841 attgtgtatt gagaacattt tataggatac cttcttcagg gaacttcatt ccaaatatct
     3901 tgatagtctt atctttagat tgtgcatatt tttcgataat tttccagttc tccacaatta
     3961 tatctgcaac attttttggt accatatttt gccatgattc tgccgaggat tcaggaactt
     4021 catttctaac atttcgatta aggtcgtcat tatgattcga attatgcata tcatttttca
     4081 aatttgtcgt aaagttatcc ttgcctagtt tttttagagc ttcctggtat aacagtcctt
     4141 ttacatccga tgaagatatt tcgagccttt ttgcctttat gggatgtaga ttatagaatc
     4201 tcaaagctat cctttcggcc ttatcaccag tatatgatat gaatcgatct tctgcaatgt
     4261 cgcgcaagac tccgcttcgt aaagaccatg aaaatggaga gaaaattggt ggaagatatt
     4321 ttatgaacgg agacatgaac ttgtaattag gcaagatttc aatattattc tgatcaccaa
     4381 acaaacccag cagcatcttt tttctcaatt cataggaaaa tggaaaggtt cttgtattta
     4441 cttccctgcc atgctttaga aaaaccactg gaaaaatata cacatgataa tctttagcta
     4501 gttgagaaat tatactttca tgtgaatttg taactggatt taaatgggca agataaagcg
     4561 ctgcaatttt ttccaattat aaagcggata aattataata acaaaaagta aggagaaagc
     4621 tcctatgctt tctttacttc aatttctatt gtagagacat tccttgttct gccgtcttct
     4681 gcttggagtg tttctgatcc aatcctgacg tcgcctattg catacccagc attttccatt
     4741 ctctttagga ttatctgtga aacatcgact gctcttccaa tgctcaaccc tctggccttt
     4801 atggtgactg atggttgatt tgctagttgg atgagtgtag atgtcacata tgccatcaga
     4861 ggtttcttac ctatgtatat agaatcgcgg ggtccatctc tttgtggttg tgtattttgt
     4921 tgtacttcag acatgaaaac cgttagtcaa aaggataatt taaatctaaa agacatcacc
     4981 ttataggaaa aaaccaatat catgttcaat catgttcacc ctatttcagg ttctgacaaa
     5041 aatcataact ctgtaggaaa gaccaaaatg ttttatctca cggttatata tttggtttac
     5101 catcatacta ttaatctatg aagaaaaact tcaaggacga aaccaatcca gaagataaat
     5161 cacgtgaatc gattacggat aaagaatcta atttacaaga tgaagagtta gccccagaaa
     5221 ttccaaaggc ctacaacaat aggccaataa gctcagaaaa aaaatttagg aaatcaaatt
     5281 caaatgtaaa gatagaagat tatgatttga tagtaaatag tctaagagat gccaccaatt
     5341 cattcatgga tgttatttac tcacttggaa aaaaagctca agaatttaga gataaggctg
     5401 aggaaacgtt cacagtggga gctaggagag atgcaaagga catacaagca cttggtgact
     5461 atgtagaaaa tgtgatcaag ggctttgaag ataccatggc agaaataaaa atgagaaatt
     5521 atggtgacga agaaaaacta ctaaaaggct acaaaaagct gcttgacgaa cagattaatc
     5581 tcattaatgc gagaatagaa ttggtaaaga gacttaaatc tagataattg ttaaactaaa
     5641 agtgatcata tttctccaaa ttcggattac tatgtttatc aacaatttac cggttattag
     5701 aaacaatatt tagctatgaa gtatttttct tttgttttct gttgattctc tgattagctc
     5761 tttgattatt acagcaagtt tttttaagaa tatttaagtg catgcacatt atttgtacta
     5821 gaaaacatga catcaatatt caatgatata aatcggaaca gtgtatcgat tgcattatca
     5881 atatttgccg ttttttcaat ctttctgatt attgactatg cagagcataa tctggcgttt
     5941 ggtttgtttc atgaaaatac tataattcct attgctgttg aatcagagtt tcttacttac
     6001 gatgatctta ttactggatt tagtataaaa tatcctcaag attgggatag agctcaacac
     6061 cttgacaaat cagttacttt ccatgctcca aaggagagta attctgacat aaatccagca
     6121 gatcttggta ttatggtaat acaagtagga tcaaatacca cactaacttc cataacacaa
     6181 aatcaactcg atactttaaa gaaactatat ccagattttc aaatacacga atctgtcgaa
     6241 accgtttttc tgggacaccc agcacacatg attatcttta cggcaactga caacacggaa
     6301 accatgcgaa aagcaatgca gatctggttt aaggaagaca ccaaagcata tttggtaact
     6361 tacaaatcag ataatgaaag attttctaaa tatctaccga ctattgacag aatgttaaac
     6421 accttttata cctacaaaaa atagtccaga ataggtataa caattgtact aagattcagt
     6481 aacttgggca tcagttacta atactaactt tagagatcat ttactcattc ttcgggcagc
     6541 cttgaaattg tcaataaatc ttcaatattc tcttcactaa ctccttttct agccaattct
     6601 cttctaagtt tcttcttatc cttgatcttc tgaggcacgt ttcttgtata ttgggctata
     6661 taatcgataa attgaggatc atcaattgta gcgttgttaa attctgtgct agaatttacc
     6721 gttaatgatt cataatttgg atttatgatg atcgagtttg ttagttcggt atgcttaaga
     6781 tcagctccgc ctaaatccac acccactaac ctggcgccac ccaaattagc acccactaac
     6841 ctggcgccac ccaaattagc acccactaac tttgcaccca ctaaatgagc atctctaaga
     6901 ttagctcccc aaaggcgagt actaactaaa ttagctcccc aaagacgagc cccaaccaaa
     6961 tccgctcctc ctaaattagt gccgaccaat ctggcgccac ttaaattagc tcccatcaaa
     7021 tccgcgccac ttaaattagc tcccatcaaa tccgcgccat caatgtcact cccacttaaa
     7081 ttagctccca tcagatccgc atccctaaga tccgcatccc taagatccgc ttctcttata
     7141 gacaaattct taaattcact agccctttta tcattaaatt cattaatctt tccactttgg
     7201 agtaacttta tggcttcata gtttattgct tttctatgcg taccggttgg ttccgcggat
     7261 gtttctatag cgtgtctata tatgttccaa tcacgtacat tttttaaaat atctgaattt
     7321 tgtattagaa aattccacaa accagaatct gttttaaaat ctcgtaacac tttccacacc
     7381 ttaatatctc gttcttcttt ttttccttca tacaagtcca aattcttcaa acgtgtttcg
     7441 tcatccatct tcagatactt atctaattcc ttaatgaaag attcatctga ttttaccaat
     7501 atgttataaa atttggtcca tcgtaaatga atggcttgga tgataagtaa ttcttttgct
     7561 tcaaaatttt tctttcccga aaaaatcaac tcttttgctt caaaattttt ctttcccgaa
     7621 aaaatctcat gcgctacaaa aaagttgttc aagaacctct tgatctctct gggattatta
     7681 tcaattgcta ctgaaattag atctatgttc ttttctataa ggtccttgaa cttatcatgt
     7741 atcatcccat tttttattaa atctttgacc aggttgacaa tatccttgtt actccatctg
     7801 ggtaaagtaa ttggtatttg aatcaacttc ttaataaaat gctctccatc aatactcgtc
     7861 ttgttatttt caatgtcgct taacttgata atcatatcat ggcttattcc aataatgtaa
     7921 acaaatccct caatatcatg aaatattctt ataagttcca aaatttcaag cgccttcttc
     7981 ggagaacatt tatccaggtc gtctacaaat acaataatcc taaatgcagg attgtctaga
     8041 cgaaggtttc ttatttcttt cttgatttcg tccaaaccat cgaaataaac cgtgtctcta
     8101 tctaattctg ctattagctg gatttttgaa tttaattcct tcttgaaagt atcaagcatt
     8161 tcatttgaaa tttcatcctc ttctgatacg tactttgata tgattgacgt aaggatatct
     8221 ggagttttct tgagaaaatt tattgcactt gtttccaatt tgtgttttag cacttcaaat
     8281 tgtttttcat tcggtaacgc aaatgctata cttttaaaca atgaaactag agggaattgt
     8341 tcctgtttat agcgccacgc ttcaagcctt atcctaatcg aatccttatc agattgaagg
     8401 attttgtcaa cagcatttat caaagtggtt tttcctgtcc cccaatcacc gaaaatcccg
     8461 attgtaaatt ttggttgtga atttctaact atgttggcta tagcattagc gtataaattg
     8521 aaatcaagaa ttggatcatt ggcaatgtca tctgttaaga ttaatcctct ttgaaaaagt
     8581 tcatcctctg cggacaaaat cacatcttac tttaaactta attcattttt aagtatttgt
     8641 tgctaaagaa gttgatatag aatctatttt tggatcaagt agaatgagac atgcatattc
     8701 gccagcaagt agttaactaa tggctagccc aaagtaatat tcttgcgagt tgaggaggca
     8761 ttatctagac catcccgcaa cctatatgtt atgttgtgtt catttatttc ttgcttacgg
     8821 atagttctgt ttaccatacg ctgttcaaat ctattactct tatactaatc aaaaatgatt
     8881 actaatttgg agacctttaa tattagttac tacgttcct
//
LOCUS       DASPFX010000021         2672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2128635, whole genome shotgun sequence.
ACCESSION   DASPFX010000021 DASPFX010000000
VERSION     DASPFX010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2128635"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            15..308
                     /locus_tag="VD694_00415"
     CDS             15..308
                     /locus_tag="VD694_00415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11191.1"
                     /translation="MEHLDKIYYMRAILGVICGIVLGVIFSRFPDPGLVPGSVGIIIL
                     LAILFYIISYVAAKRMGLRLKTEDRKKISTNGVFPFIFLLIMFTIVTYTGLRT"
     gene            357..941
                     /gene="cbiT"
                     /locus_tag="VD694_00420"
     CDS             357..941
                     /gene="cbiT"
                     /locus_tag="VD694_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6Y C5,15-methyltransferase
                     (decarboxylating) subunit CbiT"
                     /protein_id="HXW11192.1"
                     /translation="MIWNYTTPGIPDELFERTENVPITKEDIRSIVLSKLRLRKKYSV
                     IDVGCGSGSITVEICLQVSSKTVYAIDSDKNAIELTRKNLYKFGVSANLIHSKAEQVL
                     HSLPAADAIIVGGTKGKTEKIIELCISKLKKDGRLVVDTILIETMYKALKTVKKQKMR
                     DIEVTQVTIAKGKNVASGTMLVSRNPILILSATK"
     gene            1021..1743
                     /gene="cobI"
                     /locus_tag="VD694_00425"
     CDS             1021..1743
                     /gene="cobI"
                     /locus_tag="VD694_00425"
                     /EC_number="2.1.1.130"
                     /inference="COORDINATES: protein motif:HMM:TIGR01467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030788 - precorrin-2
                     C20-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-2 C(20)-methyltransferase"
                     /protein_id="HXW11193.1"
                     /translation="MKLSCIGCGPGDPELLTVKAVDRIKKADAIFTPTSKEGKPSIAL
                     SIAKKYIDESKTTITNLIFPMTKDKDSLKSQWKSNSQKIADAIHSGKNCVYLTVGDPS
                     LYSTWNYIHRELKEKYSDIDIEIIPGVPSFFAFAAQAKMSLVEGDQTLGIVPACYDLN
                     KIRHTVESCDSIIFLKDGRYFDSVIEILSETGFSDDSVITIAQDVSVDEEILETRKLK
                     DLRNTKNPAGKYFSIMVARKND"
     gene            1736..2518
                     /gene="cobM"
                     /locus_tag="VD694_00430"
     CDS             1736..2518
                     /gene="cobM"
                     /locus_tag="VD694_00430"
                     /EC_number="2.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0046026 - precorrin-4
                     C11-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-4 C(11)-methyltransferase"
                     /protein_id="HXW11194.1"
                     /translation="MIESNTVYFVGSGPGDPELITLKAKKLLESADVVVYSGSLLNPK
                     LLEYAKEGAILHDAALLDRIKIYEILRDSTKQEKLAIRFHDGDPALFSTIREQIDKLN
                     LDGINCKVVPGITAILGAASSLNLELTLPGITQTLIITRAELRTPVPEGERISNLAKH
                     GATMAFYLSVHLIRNIVEELLKSGSYQTTTPVAVVYRATWEDEKIIIGTLGNIVEKVR
                     EAKITKTAIIIVGNVVNPSSYEFSKVYDKKFTHGYRVADKSK"
BASE COUNT          914 a          461 c          531 g          766 t
ORIGIN      
        1 tgtgaagaaa gcaattggaa cacctagata agatatacta catgagagcc attttggggg
       61 ttatctgcgg tatagttctt ggcgtaatat ttagcagatt tccagaccct ggtttggtgc
      121 caggctcagt gggtatcatt attttgctcg caatattgtt ctatattatt tcgtatgttg
      181 ctgcaaaaag aatgggttta agattgaaga ccgaagatag gaaaaaaata tctaccaatg
      241 gtgtctttcc ctttatcttt ctgcttatta tgttcacgat tgttacatac acgggtctac
      301 ggacttgaga ctataatcta aaagaattta atttcagggt attttatcta ggcattatga
      361 tatggaacta tactacgcca ggcatacctg atgaattatt cgaacgtact gagaatgtcc
      421 caataaccaa ggaggatatt cgttcaattg tcctaagtaa acttcgttta agaaaaaaat
      481 attcagttat tgacgtaggt tgtggaagtg gcagtatcac tgttgagatc tgtctgcagg
      541 ttagttcaaa aactgtatac gcaatagatt cggacaagaa tgccatagaa ctaacaagga
      601 aaaatttgta caaatttggt gtttcagcga acctaattca ttccaaagcc gaacaagtcc
      661 tacattcgct tcctgcagct gatgcaatta ttgtaggggg aacgaagggg aagactgaaa
      721 aaataataga gctttgtatt tctaaactaa agaaagatgg aagacttgtt gtcgatacca
      781 tactcataga gactatgtat aaagcactaa agacagtcaa aaagcaaaaa atgcgagata
      841 ttgaagttac tcaagtcacg atagccaagg gaaaaaacgt ggcaagtggg acaatgcttg
      901 tttcgagaaa tcctatactg attctatctg ctacaaaata gtagttaaga caataggatt
      961 cacagataca atgattcttt tctttttact ttaaattaca caatttttac aagtcaaatc
     1021 atgaagcttt catgcatagg ctgcggacct ggagatccgg aactactgac agtaaaagcc
     1081 gtcgacagaa tcaaaaaggc agatgctatt ttcaccccta cctctaagga aggtaagcct
     1141 agtatagcgt tatcaatagc aaaaaaatac atcgatgaat caaagactac aattacaaat
     1201 ctaatttttc caatgacaaa ggataaggat tcactaaaat cacagtggaa gagtaattcc
     1261 cagaaaattg ctgatgctat ccattctgga aaaaattgcg tttacttaac agtaggggat
     1321 ccatctctgt acagcacatg gaattatatt cacagagaat taaaggaaaa gtatagtgac
     1381 attgatattg agatcattcc cggagttcca tccttctttg cttttgctgc tcaagcaaaa
     1441 atgagtctag tggaaggtga tcagaccctt ggtatcgttc ctgcatgcta tgatttgaac
     1501 aaaattagac acactgtaga atcttgtgat tctataatat tcctcaaaga cgggcgatac
     1561 tttgatagtg taatagaaat cttatctgaa acaggtttta gcgatgattc tgtgattact
     1621 attgcccagg acgtgtctgt agatgaggag attttggaaa caaggaaatt aaaagatttg
     1681 cgaaacacaa aaaatccagc tggaaaatac ttttctataa tggtggcaag aaaaaatgat
     1741 tgaatctaac actgtttact ttgttggctc cggtccaggt gatccagagc ttataacctt
     1801 gaaagcaaaa aagctgctcg aaagtgcaga tgtcgtagtg tattcaggat cattactcaa
     1861 tcccaaacta cttgaatatg ccaaagaggg cgcaatcctt catgacgctg ctctgttgga
     1921 cagaataaag atttatgaaa tattaagaga ctcgacgaag caagaaaagc ttgccattcg
     1981 ttttcatgat ggagatccag cattatttag cacaatcagg gagcaaattg ataaactaaa
     2041 tttagatgga ataaactgta aggtcgtacc gggtataact gcgatattgg gagccgcttc
     2101 atctttgaac ttggagttaa cccttccggg aatcactcaa acacttatta tcacaagagc
     2161 tgaacttaga actcctgtcc ccgaaggaga aagaatttct aacttagcaa aacatggtgc
     2221 gaccatggca ttctatctca gtgttcattt aataagaaac atagtagaag aattgctcaa
     2281 gtccggttcc tatcaaacta ctacccctgt ggctgttgta tatagagcta catgggaaga
     2341 tgaaaaaata ataattggaa ctcttggtaa tattgtggaa aaagtaaggg aagccaaaat
     2401 aaccaaaacc gcgattatca ttgttggaaa tgttgttaat ccaagcagct atgaattttc
     2461 aaaagtctat gataagaagt ttacacatgg atatagagta gcggacaaat caaaataata
     2521 ttttaaaagg taacgatgct accaaatttc atctagtaga catcatgcga ttagaagatt
     2581 tcttcatcct tccgcatgcc acctagtccg gatttgactt ttgatgcgca ttctatacaa
     2641 atgtcttcag aaaaaggaaa acttttcgag ca
//
LOCUS       DASPFX010000022         3664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1698378, whole genome shotgun sequence.
ACCESSION   DASPFX010000022 DASPFX010000000
VERSION     DASPFX010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1698378"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..478
                     /locus_tag="VD694_00435"
     CDS             116..478
                     /locus_tag="VD694_00435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11195.1"
                     /translation="MSAKARGTKARTKVKAKARGTKARTKTRNMRKEKGEKGSGKIHA
                     GTVFGVEKGDQTLGKLELGTELGLKKDKEGSGKIQADAQVGLESDSLNEIQEAAGDTF
                     QNIKSGLKAAKRKLDEHF"
     gene            938..3406
                     /locus_tag="VD694_00440"
     CDS             938..3406
                     /locus_tag="VD694_00440"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HXW11196.1"
                     /translation="MSSNNYEKLGVFYLGKKYDSSNKETSNDELILYDSKDLTTHAIC
                     VGMTGSGKTGLGIVVLEEAIIDGIPAIIIDPKGDMGNLLLTFPDLTGENFEPWVNPTD
                     ALEKGSTKEYAKQEADKWKKGLAEWNQDGGRIKRLRESADFVIYTPGSNSGIPISILK
                     SFEVPSKEIMQDSEALREKISSTVTSLLSLVGIDANPIESREHILISSIMEYSWKEGK
                     NLDIPSIIQYIQSPPVSKIGVLDTESFYPAKERFSLITSLNNLLASSGFSVWMEGDSL
                     DIQNLLYGTKGKSKVSIFSISHLNDKERMFFVSLLLNQLLGWLHSQSGTTSLRAILYM
                     DEIFGYFPPVANPPSKTPLLTLLKQARAFGLGIILATQNPVDLDYKGLSNTGTWFIGR
                     LQTEKDKERVLDGLEGASQTLGKSFERKEIDIILSALDKRIFVMSNAHEDGLEIFQTR
                     MALSYLRGPLIRDQIKVLMDPLRKIHKSLEPQPETASTPTTSNMIDGQERINDKILES
                     DILGNQDTSQPGQRPTIAPNISQYFIPIKKNVIDIENTVYYPYILGGATLTFSDKQSG
                     LDLVKDVVFITPVTDNAVPVDWQNAQEIHVKFSEILNGPTKENSHFVQPPSVVNKIEK
                     YDDWKKDFIQWLTQNNKLTLYKDLLTQSLSRPGESEKDFRLRIGQKVRENRDESADKL
                     RKKYAPRLAAIEEKINRAKQKMNFENDQVKQQNVQTAISIGTSLLGAFMGRRRTSSLA
                     RGIGRSLKERKDVQYAKESLESLNQQLLNVQSEFESEVASLNTKINQQDVLETILFKP
                     NKNDISVKLLSLVWYPSDQDTFSK"
BASE COUNT         1307 a          598 c          729 g         1030 t
ORIGIN      
        1 ttaccgttgt atagttataa gcctaagatt aatcatgaat tgaattatca tacttgatta
       61 cagacatgcg atagagttct gactaatata aataacttgt tactcataaa atattatgag
      121 tgccaaggca agaggtacta aggcaagaac aaaggtgaag gcaaaggcaa gaggtactaa
      181 ggcaagaaca aaaacaagga atatgagaaa agaaaaagga gaaaaggggt caggtaagat
      241 ccatgcaggt acagtatttg gagtggaaaa aggagatcag actctgggaa aattagagtt
      301 aggaacagaa ctagggttga aaaaggacaa agaaggttca ggaaagatac aagctgatgc
      361 acaagtgggc ttggaaagtg actctttaaa tgaaatacag gaagccgccg gtgatacttt
      421 tcaaaacata aagtcaggat tgaaggcagc taaaagaaaa ttagacgaac atttctaact
      481 gataaaagat aacaatatgc aatcataata tacgactata caactacggt gtattgaaaa
      541 cccacttcag gtttaagtaa ctcgttgctc attctatctg cttgaattct caatttggaa
      601 gctgatctta atttggtaac aagaacatga aggtagaagt aaaaaattaa tccctcccta
      661 gaatacctat cttactgata aatactttga agaattgtag tattcatgca ggaatgattc
      721 ttaatttacc actttcataa aacattatca atctagtaga tcaaattgga gcactatttc
      781 agtttggcgt ttggaatttt aatgggcatg taacttgtat gttctataac aaatccttga
      841 aagattggat atgtctattt ctcgtgataa tgggtattaa attgtgaagt gattataaaa
      901 tttttattgg gaagactata gtaaagcttc gtacaagatg agcagcaata attatgaaaa
      961 gcttggtgtt ttttatctag gaaaaaaata tgatagttct aacaaggaaa ccagtaatga
     1021 tgagttgatt ctatatgatt caaaggatct aactactcat gcaatttgtg ttggaatgac
     1081 aggaagtgga aaaacaggcc tcggtattgt cgtattggaa gaggccatca tagatggaat
     1141 tccagcaatt attatcgatc caaaaggcga tatgggaaac ttgcttctta ctttccctga
     1201 tctgacaggg gagaatttcg aaccatgggt aaacccaacg gacgccttag aaaaagggtc
     1261 tacaaaagaa tatgcaaaac aggaagccga taaatggaag aaaggtttgg ccgaatggaa
     1321 tcaagatgga ggacgtatta agcgtcttcg tgagtcagca gattttgtaa tctacacacc
     1381 cggtagcaat tcaggaatcc caatttcaat tctaaaatca tttgaagtac catctaaaga
     1441 gattatgcaa gatagcgaag cccttagaga aaagatatcg agtactgtta ccagtctttt
     1501 atcattagtt ggaatcgatg caaatccgat tgaaagtcgg gaacacattc tcatatcatc
     1561 aatcatggaa tattcatgga aggagggaaa gaatcttgac attccttcta taatacagta
     1621 catccagtca cccccagtaa gtaaaatagg tgtactagac acagaatcat tttaccctgc
     1681 aaaagaaagg ttttctttga tcacgtctct aaataacttg cttgcctcat ctggtttttc
     1741 tgtatggatg gaaggcgact cattggatat ccaaaattta ctttacggta caaagggtaa
     1801 atccaaagta tccatttttt ccatatcaca tttgaatgat aaggaaagga tgttctttgt
     1861 atcgctattg ttaaatcaat tactcggatg gctacactct caatcaggaa ctacgagcct
     1921 acgagcaatc ttatacatgg atgagatatt tggttatttt cctccagtcg ccaaccctcc
     1981 atcaaaaaca cctctattga ctttgcttaa acaagcaaga gcatttggac ttggaatcat
     2041 tcttgctact cagaatccag tggatttgga ttacaaggga ttatcgaata caggaacatg
     2101 gtttattggt cgccttcaga cagaaaaaga caaagagaga gtcttggatg gattagaagg
     2161 agcttcgcaa actctgggaa agtcttttga gcgaaaagaa attgacataa tattatcagc
     2221 gcttgataaa agaatttttg ttatgtcaaa tgcacatgaa gatggtctgg agatatttca
     2281 aactagaatg gctctgtcgt acttgagagg tcccttgatt agagatcaaa tcaaagttct
     2341 aatggatcct ttaagaaaaa tccataaatc attggagcca caacctgaaa cagcttcaac
     2401 cccaaccact tcaaatatga tcgatgggca ggagagaata aatgataaga tcttagaatc
     2461 tgatattcta ggaaatcaag ataccagtca accaggacag aggccaacta tcgctcctaa
     2521 tatatctcag tactttattc caattaagaa gaatgttata gatatagaga acactgttta
     2581 ttatccgtat attttaggtg gagcgacttt aaccttttct gataaacaat ctggtttgga
     2641 cctagtcaaa gatgtagttt tcattacacc tgtaacggat aatgctgttc cagttgactg
     2701 gcaaaatgct caggagattc atgtaaaatt ttctgaaatt ctaaatggtc ctaccaagga
     2761 aaattctcat tttgtgcagc caccatctgt tgttaacaag attgaaaaat atgatgattg
     2821 gaaaaaagat ttcatacagt ggttaactca gaataacaag ctaactctgt ataaagatct
     2881 cctgacacag agtctttctc gtcctggaga atctgaaaaa gactttcgtc ttagaatagg
     2941 tcagaaagta agagaaaatc gtgatgagtc tgcagataaa ttacgtaaaa agtatgctcc
     3001 aagattggcc gctattgagg aaaagattaa ccgggccaaa caaaaaatga attttgaaaa
     3061 tgaccaggta aagcaacaga atgtacaaac agccatttca attggtactt ctttattagg
     3121 agcattcatg ggaagaagga gaacatccag tttggccaga ggtattggca gatcattgaa
     3181 agaaagaaag gacgtacagt atgccaaaga gtctttagaa tcgttaaatc aacaattgtt
     3241 aaatgttcaa tcagaatttg aatcagaggt ggcctcctta aatactaaaa taaatcaaca
     3301 agacgttcta gagactattt tattcaaacc aaacaaaaat gacatctccg taaaattact
     3361 ttccttggtt tggtatcctt ccgatcaaga tactttttca aaatagccca tgcagatgaa
     3421 gaatgagaat gatatcattc tttgtttaga ttttattgcc ctgcactgaa atgattgttt
     3481 tcattgtcaa gctacaataa acctagcgag ggaacgtaag ctcattggga agcaccatta
     3541 tgaatatatg actatctgga ctaaattttt gggcgagtaa atttgaaagc ggctgtttat
     3601 agagaacaca gcaaggatcc taggcaggta gtaaaaatcg aagatatcga tataccaaaa
     3661 ccca
//
LOCUS       DASPFX010000023         4920 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1841301, whole genome shotgun sequence.
ACCESSION   DASPFX010000023 DASPFX010000000
VERSION     DASPFX010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4920
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1841301"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VD694_00445"
     CDS             <1..486
                     /locus_tag="VD694_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11197.1"
                     /translation="EILGLFSTPNAFHRQEHMGILPKLQQLKKNNDKLRIRILTPFDD
                     QIDSVSKKMKDESDISIMNLDESSRIKASILLVDRKSILFVGLKDDTKSTSFDAIGVS
                     MFSSIRSTVISYVTIFEIIWRQQELYQQLSKFRQRIETYELINKQLNDTILDLKRRLD
                     F"
     gene            complement(639..974)
                     /locus_tag="VD694_00450"
     CDS             complement(639..974)
                     /locus_tag="VD694_00450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11198.1"
                     /translation="MINKIREQNIVLLLPIIVTLNTVFVSGFIDFDTSVMFMSNSVGL
                     REGEKTKSSGLPSSHWCRKCSSDSFSLEDTVQVTPDSSKPTLCEIYVCDDCGEKIEYW
                     KYFEGSPSA"
     gene            1247..1531
                     /locus_tag="VD694_00455"
     CDS             1247..1531
                     /locus_tag="VD694_00455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11199.1"
                     /translation="MLVKVDKVIEGNKIRVVELDIDNYGSVIPLRELELRLPEDDSVI
                     KVLSSTEYAAIFTEGEIDEGGDTIILANSVSLDELNEEKKRAIDAMNKTS"
     gene            1681..2370
                     /locus_tag="VD694_00460"
     CDS             1681..2370
                     /locus_tag="VD694_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11200.1"
                     /translation="MKNQDFLKREELEKFLTQNGIRIDDYLKTAMDVSTEIHSGIKRE
                     DNQSPFLETHIWPVTRDVVKHYLTVNRNITSVEIVSSILHDVMEDNDRILDLYKTKEY
                     GFDAYLKYRFGSRVYEICMDLKIKPLENYPGDNDEKRQLARFHDYCKGLSSADYDMKV
                     IKLADRENNMKFISNMPNLEGNLVRNKIKRYLREAEDFYLSFALLEPAMKDIYLKIRE
                     SYENLKLLNNT"
     gene            complement(2454..3017)
                     /locus_tag="VD694_00465"
     CDS             complement(2454..3017)
                     /locus_tag="VD694_00465"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HXW11201.1"
                     /translation="MSQQHKLPIVAILAAILSIAAISLSFSSIQAQEGETFSASLSGN
                     NEVPSTQSTSTGLARFQTDENGTRVSYWLNITGLNAITGAHIHNGSAGQNGDVVVTLS
                     GPETAENTENLVISLKGNITNDKLQGPLASKELSELVSLMSDGTVYLNVHTDEFQNGE
                     VRGQIVSGLPATEINVTSVAPNATLGQ"
     gene            4085..4264
                     /locus_tag="VD694_00470"
     CDS             4085..4264
                     /locus_tag="VD694_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11202.1"
                     /translation="MKDDPNAKDILSILIDEPSLNIMKLLDKRELSTQNISSTLNIPI
                     SSTYRKIKNSSNSKS"
     gene            complement(4448..>4920)
                     /locus_tag="VD694_00475"
     CDS             complement(4448..>4920)
                     /locus_tag="VD694_00475"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HXW11203.1"
                     /translation="VKASVAKFNAEELITKRETAKSVIADAIRSTLSSNNIQVQNVFI
                     TDFKFSDAFATQIEQKVVAFQKFLTEQNNLRAIEVVANQTVAQAEGQARANAAKASGE
                     SQAINIITQQLRESPEYLQWQAITKWNGQMPYALGSSGFPFFQLPVPQGQNQTK"
BASE COUNT         1687 a          784 c          871 g         1578 t
ORIGIN      
        1 gaaattttag gactgttttc aacgccaaat gctttccata gacaagaaca catggggata
       61 ttaccgaaat tacaacaatt gaaaaaaaat aacgataaat tgagaataag aatacttact
      121 ccatttgatg atcagattga ttcagtttca aaaaagatga aagatgaatc cgatattagc
      181 atcatgaatc tagatgaatc ctcaagaatt aaggcttcca ttttactagt tgataggaaa
      241 tctatcctat ttgttggatt gaaggatgat acgaaaagta cctcatttga cgcaatcggt
      301 gtatcaatgt tctcttctat aagatcaaca gtaatttcct atgttactat atttgaaata
      361 atatggagac agcaggagct atatcagcag ttatccaaat tccgtcagcg aatagaaaca
      421 tacgaactaa tcaataagca attaaatgat acaatacttg acctaaagcg ccgactagat
      481 ttctagcgac tagcacaaat acaatgttta gatatcagga tttgataatt atatcatatt
      541 ctgtaattac ctgattatga caatgaatca tctaggattt acaatttaca attcaaatga
      601 caatacaatg caatcctact taaacaaaga ataagagatc aggcagacgg ggatccttcg
      661 aaatatttcc aatactcaat tttctcgccg cagtcgtcgc atacatatat ttcacatagt
      721 gttggtttac tagaatcagg tgtaacttga actgtatctt ccagagaaaa tgagtcagac
      781 gaacactttc tacaccaatg actactgggt aatcctgatg atttggtctt ttcaccttca
      841 cgaagtccaa ctgaatttga cataaacatc acgcttgtgt caaaatcgat aaatccggaa
      901 acaaatacag tgtttaaagt cactattatg ggtagtagaa gcacgatatt ttgttcacgt
      961 attttattaa tcattggatg atatagaaca aatatcatta ataagaatat ccatagtaat
     1021 ttgtcttttt tatcaaaaaa acggaatcta tttgatcaaa acactctaaa tcctaaagat
     1081 actagttacc aaagtacaat attagattta tttcagaaaa agcatttgat ttagtcggta
     1141 agtattctaa aatgctcttt tgaacacttt tcgtttgatt tatgactagg cagagaaaat
     1201 acctaagtag ctgaatgatg cataatatga tggtgcactg tgcgtcttgt tagtaaaggt
     1261 agacaaggta atagaaggaa acaaaattag agttgttgaa cttgatattg ataattatgg
     1321 gtctgtcata cccttacggg aattggaatt aaggctaccc gaggacgatt cggtaatcaa
     1381 agttttatct tcaactgaat atgcagcgat atttactgag ggtgaaattg atgaaggtgg
     1441 tgatactatc attttggcga atagtgtttc actggatgaa ctaaatgaag aaaaaaagag
     1501 ggcaattgat gccatgaaca aaacatctta gaaaaaagtg acctaagaga tgggtagggt
     1561 cgtaagagtc tataattacg agtatgatat ttagaataat attaggtcta ctagcaaatt
     1621 tcttaatttt tccaaagttt ccaaagaaat ccttttgttg tgcaggtttt aattaaaaac
     1681 atgaagaatc aggattttct aaagagggaa gagctggaga aattccttac tcaaaatgga
     1741 ataaggattg atgattatct taaaacagcg atggatgtat caaccgagat tcatagtgga
     1801 atcaaacggg aagataatca gtccccattt cttgaaactc atatctggcc cgttacaagg
     1861 gatgtagtca agcattatct caccgttaat cgtaacataa ctagtgtcga aatagtttca
     1921 tcgatattac atgatgtgat ggaggataat gatagaatac tcgatctgta caagacgaaa
     1981 gaatatggtt ttgatgcata tctcaagtat aggtttggta gtagggttta cgagatttgt
     2041 atggatttaa agataaaacc tcttgagaat tatcctggtg acaatgatga gaaaaggcaa
     2101 ttggctagat ttcatgatta ctgcaaagga ttgagctctg ctgattatga tatgaaagtc
     2161 ataaaactgg ctgatcgaga aaataatatg aaattcatta gtaatatgcc aaatttagaa
     2221 ggaaatctag taagaaataa gattaagaga tatttgcgag aagctgaaga tttctacctt
     2281 tcttttgcct tgttggaacc ggcaatgaaa gacatttatc taaaaatcag agagtcttat
     2341 gaaaatctaa aattattgaa taatacttga ttgtttgaat gtaatcatca ttgaatcaaa
     2401 atttgaacaa tcatgaaaaa aagaaaaaag gtataggaat tcgcttggct taatcattga
     2461 cccaaagttg catttggtgc tacagaggta acattaattt ccgttgcagg taaccctgag
     2521 actatttgac ctcggacctc cccattttga aattcatcag tgtgaacatt taggtacaca
     2581 gtcccgtcgc tcatcaaact cacaagttct gagagttctt tactcgctag aggcccctgt
     2641 agtttatcat ttgttatgtt tccctttaaa gatatgacta gattttcagt attttcggca
     2701 gtttctggtc ctgacaacgt aacgacgaca tctccgtttt gccctgcact tccgttgtgt
     2761 atgtgtgctc ctgttattgc gttcaaaccg gtaatgttaa gccagtaaga tactcgtgta
     2821 ccgttttcat cagtctggaa tctggctaaa ccagtagaag tagactgtgt tgaagggact
     2881 tcattgttac ctgatagact cgcagagaat gtctctcctt cctgtgcttg aattgaacta
     2941 aaggacaaag agattgcagc gattgataat attgcagcta atatagcgac aataggtaat
     3001 ttgtgctgtt gtgacattaa aatatgacag cataattact ataaatacta tctactattg
     3061 ataataaggt caataattaa attcgaatat aatgtgattt gaaattacat cattacagaa
     3121 tcatctaaat actgattgta ggataagtca agttattata gtaaatgttc aaggtcagat
     3181 cacggttaac tttgtcgtaa cactccgatg ggataactct acacattaat cccatcggtt
     3241 tttctattta aattatgttg gacacgtgca aagtactacg aatcatattt gctgatggga
     3301 tatatctcca gttatgtccc atcggtatta ttacgtttct aatagtacac cacgaagatt
     3361 agtaagcgac gttacttcat agaatgagta tctaaaaaga tcatggattg taatagaagt
     3421 gaagtataca actgtcatca ggtaaactag tttcaataat gattcacata tcacaacgct
     3481 ttctcgtaat tacttaactg ctgcatgtgt aatattagga aaatagacag tacaatgtta
     3541 caacaagtcc ttttataagt aacgcaataa tgaccataaa atttttttac gaatttttat
     3601 tcataggtaa actaccaagc tatatcattt cctcaatatg agagtatcaa gtgctagatg
     3661 attacaaatt caaattgatt ggtgcctatc cggtgagaca aagcaccaac caatagtcat
     3721 cctaacaatg aattctagat ggaccgtaca ttaacgtcac tgaactttat ataaaattta
     3781 taatacaagt atctaactcg gagtgaattt tcttgcgaat taatggtatt ggtttcttaa
     3841 tacctcttga aaggatcttg aagagtcaca gattgcatac aattctcact ttaattcttt
     3901 caagtccata aatctttact aataaatata ttattactat tctcggtaaa tgagagtgga
     3961 agcaatttaa tattactttt agtaaatatt tgcgtgcatg aataacaaat caattcaatc
     4021 aattatgttt ggaattgacc gaaatttctg gatttaaact tgttatcatt gccatgatca
     4081 aaagatgaaa gatgatccta atgcaaagga tattctttcc attttaatag atgaaccgtc
     4141 actaaatatt atgaaattgc ttgacaaaag agaactgagt acccaaaata tttcttcaac
     4201 tctaaatata cctatctctt caacatatag aaaaataaaa aactcgagca actcaaaatc
     4261 ataaaaacaa cgaaagtagt cagaacattg gatggattgg acgaatcgtt ttatacttta
     4321 tccataaaag aaataaacgt tacttataag tgtaataaat tttcatttga cattcgtcaa
     4381 aaagcattgg atgagaagat agtaaggctt tggcaaaaaa ttaaaaatta agtatggaac
     4441 ttttgaatta ttttgtttga ttctgtcctt gtggcactgg cagctggaag aacggaaatc
     4501 cgctgctacc tagtgcgtat ggcatttgtc cattccattt tgtgatagcc tgccattgaa
     4561 ggtattctgg gctttctctt aactgctggg taataatatt tatggcttgg gattcaccac
     4621 tggctttggc agcatttgct cttgcctgtc cttcagcctg cgctacggtt tggtttgcaa
     4681 caacctcaat tgcccttaga ttattttgtt cagtaagaaa cttttgaaat gcaactactt
     4741 tttgttctat ttgagtagca aaagcatctg aaaatttaaa atcagtgata aaaacatttt
     4801 gtacttggat attatttgaa gaaagtgtac ttctaatggc atcagcaatt acactttttg
     4861 ccgtttctct ctttgtaatc aattcttcag cattaaattt ggctacgcta gcttttaccg
//
LOCUS       DASPFX010000024         2515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2126646, whole genome shotgun sequence.
ACCESSION   DASPFX010000024 DASPFX010000000
VERSION     DASPFX010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2126646"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..955
                     /locus_tag="VD694_00480"
     CDS             <1..955
                     /locus_tag="VD694_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HXW11204.1"
                     /translation="KTAVFFGEQLSSYSFGNAHPFNSNRIHAFWSKFCALNLDKSTQI
                     HIESPKTIQEDILLRFHDREYIDLVKKCSKVGTGFLDSGDTPAFKGVFEASSYIVGTS
                     VKALELVMEKRDGILHAFNPIGGLHHSRRGFAGGFCVFNDIGIIILIAREKYGIKRIA
                     YVDIDAHHGDGVYYEFEDDPALFIADTHEDGRYLYPGTGNESENGLGDAKGTKLNIPL
                     KPGSDDSDFFNAFERIKGFVDRIARPELIIFQCGADCLSDDPLTHLRCSPKVHGFASE
                     ILHQLSHKHSDGRIIALGGGGYNPINIASAWTEVISTLMRS"
     gene            complement(969..1355)
                     /locus_tag="VD694_00485"
     CDS             complement(969..1355)
                     /locus_tag="VD694_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11205.1"
                     /translation="MKYKIHSPHSSAAFMHIQSNWITITPVLVSPVAISNSKIYQKSY
                     SAWFLISYAQINLSKDQEEKKKFKPKSHEREDLTANPLGSQDLESKDKNSRLQQQKQR
                     EIDQQNISPEEIIEEEEKRQPQTTQE"
     gene            1529..2485
                     /locus_tag="VD694_00490"
     CDS             1529..2485
                     /locus_tag="VD694_00490"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HXW11206.1"
                     /translation="MKLWYKKNAPELQIKESKSLLHPFIVKKYRGLTINPYQGCQHRC
                     GYCYATYEWSPDFYDKIYSKSNAPQILEDQIRSLKRGPIEPVMVSSATDPYQPAELRF
                     ELTRKCVEVLQKYCIPYYVFTKSILISRDLELHQRYKDNCFVVWSITTTNETLRRIIE
                     PGTPPTYTMFSVIRKFSDAGIRCGVNIDPIIPLLTDSPNNLDSIVDSCQRTGVGHVFG
                     ATLRLRADIWERIKNILTVLEVPNGIKGYERLFHFKEPLESKYNLEADNSYSKTLLEN
                     LSRKVSARGMSFDFPNLVATNWVGNNTKSYNNKNQLALTDYM"
BASE COUNT          735 a          469 c          534 g          777 t
ORIGIN      
        1 taaaactgct gtctttttcg gagagcagct ctcgagttat agctttggta atgcacaccc
       61 ttttaattcg aataggatac atgccttctg gtctaagttc tgtgcgttga atcttgataa
      121 atctacgcag atccatattg aaagtcctaa gactatacaa gaagacattc tattacgatt
      181 tcatgacagg gaatatattg atcttgtcaa aaaatgttcg aaagtcggta ctggcttttt
      241 ggacagcggt gacacacctg ctttcaaggg ggttttcgag gcttcttcct acatcgtcgg
      301 cacgagtgta aaagcgttgg aattagtgat ggagaaaaga gatgggatac tacatgcttt
      361 taaccccatt ggaggacttc atcactcacg gcgcggattt gcgggaggat tctgtgtttt
      421 taacgatatt ggtataatta tcttgatagc tcgagaaaaa tatggcataa aaagaatagc
      481 ctatgtcgat atagatgcac accatggcga tggagtatat tatgaatttg aagacgatcc
      541 tgccctcttt attgcggata cccacgagga tggtcgttat ttatatcctg ggaccggcaa
      601 tgaatcagaa aatggcttag gtgatgctaa aggcaccaaa ctgaatatac ctctaaagcc
      661 cggttcagat gatagcgact ttttcaatgc gtttgaaaga atcaaaggct ttgtcgaccg
      721 aattgcaagg cctgaattaa ttattttcca atgcggagca gattgtttaa gtgatgaccc
      781 attaacgcac ttgcgttgta gtcccaaggt gcacggattt gcgtcagaaa tactgcatca
      841 actttcgcat aagcactcag atggaagaat aatcgcatta ggtgggggag gatataatcc
      901 aatcaatatt gcaagtgcgt ggacggaggt gattagcaca cttatgagaa gctgagggtg
      961 agactttatt attcctgcgt ggtctgtggc tgtctttttt cttcctcttc tattatctct
     1021 tctggggata tattttgttg atctatttct cgttgttttt gttgttgcag cctgctgttc
     1081 ttatcctttg actcgagatc ttggctacct aatggattgg cagttaagtc ttcgcgctcg
     1141 tgagacttgg gcttgaattt ttttttctcc tcttgatctt tgctcaaatt tatttgtgcg
     1201 tatgagataa gaaaccatgc gctgtaagat ttttgataga ttttactatt agatattgct
     1261 actggagata ccaagactgg tgtaatagtt atccagtttg actgaatatg catgaaagcg
     1321 gcagagctat gaggagagtg tattttatac ttcataccaa gcctcagtaa tctgtgctgt
     1381 gcttcaattt ccgaaccaat tggaattgaa atctatgtga ctgacaaaac actcgacttg
     1441 ttaatctgca cttccatgaa atgcaccgta ttctccctcc ctctgcgggg cttccagcct
     1501 tattacacaa gtatttgagc tgtatcttat gaaactatgg tataaaaaaa atgctcctga
     1561 attacaaata aaggagagca aatctctgct tcatccgttt atagtaaaga aatatcgagg
     1621 actcactatt aacccctatc agggttgtca gcataggtgc ggctattgct atgccacata
     1681 tgaatggtca cccgattttt atgataaaat ttattctaaa agtaatgctc ctcaaatact
     1741 tgaggatcaa ataagatcat tgaaaagagg acctatcgaa ccggtaatgg tatcgtctgc
     1801 gacagatcct tatcaaccag ccgaacttag gtttgaacta acaagaaaat gtgttgaagt
     1861 actacaaaag tactgcattc cttattacgt ttttaccaaa tcaattttga tctccaggga
     1921 tctggagctc catcagcggt acaaagacaa ttgctttgta gtatggtcta ttacaactac
     1981 caacgaaaca ttgcgacgca tcatcgagcc tggaacccct cccacatata caatgttctc
     2041 agtaataaga aaatttagcg acgccggcat aagatgtgga gtaaacatag atcctattat
     2101 tccgctactc actgattcgc ctaataatct tgactctatc gtggacagtt gtcaaaggac
     2161 tggagttggt catgttttcg gtgctactct gaggctaagg gcggacatat gggaaagaat
     2221 caaaaatatt ctaacagttt tagaggtgcc aaatggtatc aagggatatg aacgattatt
     2281 tcattttaag gaacctctag aatcaaagta taacttggaa gctgataact cctattcaaa
     2341 aacattgtta gagaatctaa gtcgtaaagt tagcgcaagg ggcatgtctt ttgattttcc
     2401 taacttagtt gctacaaatt gggttggaaa taatacaaaa tcatacaata acaaaaatca
     2461 acttgcgcta acggattaca tgtaggatgc ggcgtgtaga gtttgacggt ttatt
//
LOCUS       DASPFX010000025         3023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_558834, whole genome shotgun sequence.
ACCESSION   DASPFX010000025 DASPFX010000000
VERSION     DASPFX010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558834"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(195..533)
                     /locus_tag="VD694_00495"
     CDS             complement(195..533)
                     /locus_tag="VD694_00495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11207.1"
                     /translation="MIIGLEGILPIMFSGLLLQTEIFDGIESTIQAATGIFSILLLAL
                     SISAYRRTGLKKIIYAATAFTLFAIQLLFESLEDTFEVLDTGYGSVITSSMTLAILVL
                     FFLAIVQKNR"
     gene            complement(536..1078)
                     /locus_tag="VD694_00500"
     CDS             complement(536..1078)
                     /locus_tag="VD694_00500"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HXW11208.1"
                     /translation="MDEPGNTAERILHFIEDNPGCHLRKIKENMDVSMGTVQYHLEKL
                     EKMQRVVSARHGLYKHYFPVGIFHDNEKEILQVLGQETSREILMFIIEQQAPTQTDIV
                     NRVGISAASVSWYLRRLIEYNLVDEIREGRYKRYQLHDRKTTSRYITVLMRNYYPNIW
                     DRWSNRLVETFLSLSRSDDD"
     gene            1626..1763
                     /locus_tag="VD694_00505"
     CDS             1626..1763
                     /locus_tag="VD694_00505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11209.1"
                     /translation="MIGSRIELECTKCKGIVNWWEKPVHTRKIIPFKRKWSDEERLAM
                     L"
     gene            1856..2137
                     /locus_tag="VD694_00510"
     CDS             1856..2137
                     /locus_tag="VD694_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11210.1"
                     /translation="MSDPGDKNRKKNKKIDVIKNPQDQDPTFVFDPLKELLMQYANQY
                     RSNSTRNSSDSDEKLVRKARHNSSRFSKSDLKNKSKHGLSKQSHSPVYE"
BASE COUNT         1037 a          517 c          529 g          940 t
ORIGIN      
        1 aagggtcagg agaagatgaa gatgagccag gagacgtaga cacaaacgac aaagaagatt
       61 agaacatact gcaacagata attgacgtac atgagagaac atgcatttct cctctttcct
      121 tttttacctc attcagcttc ctgtagatta tgaaggcaca caggaagtaa ttcagaatat
      181 tctattttcc ttacctatct atttttttgt actattgcta gaaaaaatag aactaatata
      241 gcaagcgtca ttgaggacgt tattactgat ccataacctg tgtctaatac ttcgaaggta
      301 tcttctaaag attcgaataa caattggatt gcaaataaag taaatgctgt agctgcatat
      361 attatcttct tgaggcctgt tcttctataa gctgaaattg atagtgccaa taacagtatt
      421 gagaagattc cggtagctgc ttgaattgtg ctctcaatgc catcaaaaat ttctgtttga
      481 agtaacaatc ctgaaaacat gattggcaat attccttcca atccaataat caaacttaat
      541 catcatcact cctcgataga gaaagaaaag tctccacaag tcgattgctc catctgtccc
      601 atatatttgg atagtagttt cgcattaata cagtaatata tctagaagtg gttttcctgt
      661 cgtgtagttg gtatcttttg tatctgccct ctcttatttc atcaactagg ttgtattcaa
      721 tcaaacgtct caagtaccaa ctaacagatg ctgcagatat tccaactcta ttgactatat
      781 ctgtctgggt aggtgcctgt tgctctatga tgaacataag gatctcacga ctggtttctt
      841 gcccgagaac ttgaaggatt tctttttcat tgtcatgaaa aattccaaca gggaaatagt
      901 gtttgtataa accatgccta gcagatacga ctctttgcat tttctccaat ttttctagat
      961 ggtattgtac agttcccata gagacatcca tattttcctt aatcttacgt agatggcagc
     1021 ctggattatc ttcgatgaaa tgtaatatcc tttcagccgt attcccaggc tcatccacaa
     1081 ctaccagtca tttgtgggta ataataacaa ttacaattac aactacaaat aaaggatgaa
     1141 tccaagattc tgccttctcg ccgtatcata aatgctttgt ggtacaagta cctaattgat
     1201 tatgatttgt gcaagtgcga ttctccagtt tcatttagga actcgtatca aatcgcatta
     1261 tttgtattgt tatctatcta ttaatattct gattcaccaa tcaattaaca acttttatca
     1321 ctatactcta tcgaatatag atcctgaata aattgttggc cgcagtacag attcgacatt
     1381 gagtatacat tattcccata atgcagtatc agagaatacc aatagcagat ttgtagctat
     1441 ttatctattt gaggtacacg atcgttactt attaaaatac taattcaaat tgataatgac
     1501 cgattcgata gcccaattag actgtcccgt aataacttat gttttataac ataaaatatg
     1561 cgacagatta aagaatgcaa ttgtagtccc ggggtctact agtatggaga tctgtcaaaa
     1621 ttaacatgat tggctcaaga atagaacttg aatgtactaa atgtaaaggt attgttaatt
     1681 ggtgggaaaa accagtacac actagaaaga taataccatt taagcgaaaa tggtctgatg
     1741 aagaacgttt agctatgcta tagtctctcg taatactata atagtatttt gatattcaat
     1801 tgagtctaat aacatattaa taattagaca gagtattttt atgactagct taaggatgtc
     1861 cgacccaggt gataagaata ggaaaaagaa taaaaaaata gatgtgatta agaatccaca
     1921 agatcaggat ccaacatttg tatttgatcc tctgaaagaa cttctgatgc aatatgcaaa
     1981 tcaatacagg agtaatagca cgcgtaacag ttctgatagt gatgaaaaat tagtaaggaa
     2041 ggctcgacat aactcaagta gattttcgaa aagtgatctt aagaataagt caaagcatgg
     2101 attgtctaag cagagtcatt cgcctgtcta cgaatagaag gggtacatgt tactagttca
     2161 agaacaacaa agttctgggc taattactct agtgatattc tgtgctaaaa cacatcataa
     2221 ttttataaat acacattttt taggttgttt aatgatagac aaagctctga gcgtgaaaat
     2281 gataagatat tacgcaataa atttcctcca taatatgaag gaaaaaggga aaatttataa
     2341 ttcaagaatc tatttaacgc gaaatttagg gtgagaaaac tgcgttaatt atcgaacatg
     2401 catttaaacc tattttctag gaatatacat tctggttgca tcaatcaaat cttaaggctt
     2461 tttttaaatc aatgctaaaa cggaagagat gtcctgagtc aaatatgcta agtaagtgca
     2521 agttcactac tactgtaggt tgtagcaaag gattaagaaa agaactagtg aaatacgcta
     2581 catgaaggtt aaaaggtaaa atatagaaca ttagaatggc aacacatgaa ggttaaaagg
     2641 taaaatatag aacattagaa tggtaaatca ttctaaagga gaaaggactt tgttgcgtaa
     2701 cgcatttaaa tattcagcgt caacatgatt acgctagaac ttgaaacaag gattaatgta
     2761 gcttacaata ataatacttg cagctgtctc tgtattatct ttattatgcg gtgcctcagt
     2821 tcaagcatca tcagtcccct caacaactac cagttccaat tgcgtcaact ttgactctga
     2881 agcaagagtg attacaatca cttgttcggc tactgatctg accggtgttt atgatcagcc
     2941 ccaagaacca gatgtattaa ctagagataa ttctttagac aaaggctgga tactgaatgc
     3001 aggaattaca attgcacaaa acg
//
LOCUS       DASPFX010000026         3051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1554470, whole genome shotgun sequence.
ACCESSION   DASPFX010000026 DASPFX010000000
VERSION     DASPFX010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1554470"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(436..675)
                     /locus_tag="VD694_00515"
     CDS             complement(436..675)
                     /locus_tag="VD694_00515"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-binding protein"
                     /protein_id="HXW11211.1"
                     /translation="MPKFLDVHPMKGFDEETLRKWTMPAPVDEFGVKPENIFYNKEED
                     RFFCLLEAPNKEAIEKHHERFGLKCEWITEVETIA"
     gene            complement(703..1167)
                     /locus_tag="VD694_00520"
     CDS             complement(703..1167)
                     /locus_tag="VD694_00520"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HXW11212.1"
                     /translation="MCYHRSSSDATSLEERNKTLIRSFISEIFNERNPSSNEKYFAKE
                     SVEVSPHKGNISEGFKQFISEFFKAFPDWRATIEYIVAENNLVVVFLNGSGMHKGEFH
                     GIPPTNKQVNMRAAELYKIENERITRHWYVFDQLNLLKQAGTLLSVTPFVYV"
     gene            complement(1323..1712)
                     /locus_tag="VD694_00525"
     CDS             complement(1323..1712)
                     /locus_tag="VD694_00525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11213.1"
                     /translation="MMRIPKEDLKLWPKLKIAETAYLPVRSYGLEEFLHGPRFVLDRQ
                     TSLLIFSSFSEPRRKSLMNYARTIGSEVIDVHDNLFRVPDEFKWLCQLVWGQFFAVEL
                     SKILGINPDTVGINQYPYQKAEEKLTM"
     gene            complement(2156..2290)
                     /locus_tag="VD694_00530"
     CDS             complement(2156..2290)
                     /locus_tag="VD694_00530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11214.1"
                     /translation="MEIDNTDAEPKMLAPWLVEQGLLPTQISEALDEAAAKSAIAWGL
                     "
     gene            complement(2280..2459)
                     /locus_tag="VD694_00535"
     CDS             complement(2280..2459)
                     /locus_tag="VD694_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11215.1"
                     /translation="MIEGSWLPSFNEQPIQDSEKQIGFFPVFPVPYIGNQNATLMGGW
                     ELTITSTLTRIWRGN"
     gene            complement(2680..>3051)
                     /locus_tag="VD694_00540"
     CDS             complement(2680..>3051)
                     /locus_tag="VD694_00540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11216.1"
                     /translation="STLMGGWEFGVPGTSAHKELAWELITIMLEPQILGPYLTKHANM
                     PTQIPIGEGQYSLEPRKVVPYYVQLVSMIPHGDTRPSIPEYPQIAEFIKEALDAVYYD
                     KASPQEALDDAAEKSAKALGW"
BASE COUNT          888 a          617 c          545 g         1001 t
ORIGIN      
        1 taataacaag agcagaagtg acagcaataa tgactagaga atctttcata gcaagtctgt
       61 gacttgacac gaacctcagc acgcagcgaa gtattaaaag atttctggcc ttagactaaa
      121 agaggtgtct atcccactta ataaacatgt ttgttaaaaa agagatcttt attgggccta
      181 agggtgtgta acccattttt gaactaaatt gtgggatcag actaaatggc atattcaaaa
      241 aatgaattca gtttatagaa ttatgttgta gtcgttgtat atcaaccaac aatttctatt
      301 tcagttatag ccgccttgtt gatacaaaga atccctccat aaatggttac gagttggtag
      361 aaaaaaatgt ataacatgat ctcccccatt tttaccttat agtttcttgt actattctgt
      421 ctcttggtac ttatactatg ctatcgtttc tacttctgta atccattcac actttaatcc
      481 aaatctttca tgatgttttt ctattgcttc cttattggga gcctcaagaa gacaaaagaa
      541 tctatcttct tctttattgt aaaatatatt ctcaggtttg acaccaaatt catccacagg
      601 agcaggcatg gtccattttc ttaaggtttc ttcatcaaag cctttcattg gatgtacatc
      661 cagaaacttt ggcattctat gattcgctca ttcctaaggt atttaaacat acacaaatgg
      721 tgttacagaa agtaatgtgc cagcttgctt caataaatta agttggtcaa acacatacca
      781 atgtctcgta attctttcat tttctatctt gtaaagttct gccgctctca tgttcacttg
      841 tttgtttgta ggcggtattc catgaaactc tcccttatgc attccagacc catttagaaa
      901 caccactacg agattatttt ctgcaacgat gtattcaatg gtcgcacgcc aatcaggaaa
      961 tgccttaaag aattcagata tgaattgttt aaacccttca ctgatgtttc ctttatgagg
     1021 actgacttca actgattctt tggcgaaata tttttcattg gatgaggggt tgcgttcatt
     1081 aaagatctcg cttataaatg atcttatgag agtcttgttt ctttcctcaa gtgatgtcgc
     1141 atcagacgat gacctatggt aacacataag gagacacact atttatctaa tgaaattagt
     1201 cacgcgcgcg aatccgattc aatgtaggtt attcattcac gaaagaactt acttgcaaac
     1261 ttgctgtggg aagtctctcc atgatcttgt ttttttaaat aatattcgaa acccaaacct
     1321 aattacattg ttagtttttc ttccgccttc tgatacggat actggtttat cccaacagta
     1381 tctgggttga ttcctagtat ctttgacaat tctactgcaa agaattgtcc ccagacaagt
     1441 tgacataacc atttaaattc atctggcact cgaaacaggt tatcatgaac atcaataacc
     1501 tctgaaccaa tggtcctcgc gtaattcatt aaagatttcc ttctaggttc tgaaaaagat
     1561 gaaaaaatta acagacttgt ttgtctatct aagacgaacc gaggtccatg taaaaactct
     1621 tctagtccat aactcctcac cggaagatat gctgtttctg caatctttag tttaggccag
     1681 agtttgaggt cttcctttgg gatacgcatc atagatgggc agttaaaaag aaattgataa
     1741 atcgatttcc ttagtcaata atcgagggat gggggaaaga aatgcacatc ccgcttgagc
     1801 gaagtcttag tccaactaaa tatataatat ttggttagct gttagaatac tgctaaagtt
     1861 tattttcttg tacttgtgca cctctaaaaa acgggcccca agcggcgtcc atccactgtt
     1921 tattcaattt ctggaaaagt tcaatatatg aaatatagta agaggagaca ttttcctctt
     1981 gttgaatttg ttaccgtgtt acataagctt atgattcaat aaatcaggta cattgtctct
     2041 gcgggactat cgaaccacca tttcaaaaag agtattagat taatgaagat atcctaactt
     2101 tgttaaatca agactatgat caaaaattaa tagaaaatgg tgcagccgaa ggctctcaca
     2161 aaccccatgc aatcgcagat ttagcggccg cttcatctaa tgcttctgat atctgtgtag
     2221 gcaaaaggcc ttgttccacc aaccatggtg caagcatctt tggttcagca tcagtgttat
     2281 caatttccac gccatatcct tgtgagtgtg ctagttatag taagttccca tcctcccatt
     2341 agtgtagcgt tctggttacc tatatacggt actggaaaca cgggaaaaaa gccaatctgt
     2401 ttttcagaat cttgaatagg ttgctcatta aagcttggta gccaggaacc ttctatcata
     2461 accgcgaatt tcctgtcgag aaattccttt ccccagtaat gttccttctg tggctttata
     2521 cctgcattaa tctgatcctg tatatactac tatcttatag atttatatgg aatatatgga
     2581 actcatacac aaatggcatg tcctttatac tttgctgaaa gtagaaaatt cttaggtaca
     2641 aaggtcctaa atgtgcatct tgggacagta gaacccgtat taccagccta atgccttcgc
     2701 tgatttttct gcagcatcat ctaaggcttc ctgtggactc gctttgtcat agtaaactgc
     2761 gtctaatgcc tcttttatga actcagctat ttgtgggtat tcaggaatgc ttggcctagt
     2821 atctccatga ggtatcatcg atactaattg gacataatat ggtactactt tcctaggttc
     2881 tagggaatat tgaccctcgc cgatagggat ctgagtgggc atgttcgcat gttttgtcaa
     2941 atatggtcca agtatttgtg gttctagcat gatggttatc agttcccatg ccagctcctt
     3001 atgagcagac gtcccaggta ccccaaactc ccatcctccc attaacgtgg a
//
LOCUS       DASPFX010000027         2182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2126218, whole genome shotgun sequence.
ACCESSION   DASPFX010000027 DASPFX010000000
VERSION     DASPFX010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2126218"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            441..1439
                     /gene="ilvC"
                     /locus_tag="VD694_00545"
     CDS             441..1439
                     /gene="ilvC"
                     /locus_tag="VD694_00545"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HXW11217.1"
                     /translation="MTAKKWFDDDVSLEQLKNKTVAVIGYGIQGRAQANNMKDSGINV
                     IIGLYKGAKSWKLAESDGHVVKEVKEASQLADIVHILTPDMEQANVYKNDIEPGLTEG
                     KTLSFSHGAAIHWKWIVPPKNVDVVMVAPKGPGQRVRELYQEGFGTPSLVAVYRDSSK
                     NAMKTVLAMAKAIGSTRPGVIETTFKEEVETDWFGEQVDLCGGAHSLVLNAFETLVEA
                     GYQPEVAYYECLHELKLIVDLIYKYGITGMYNRVSETARYGGLTRGPMVINEQAKENM
                     KKVLKDIQSGEFANEWVSIYKKDGKNSFVRFMNQLEKNQLETVGKEMRKMMWKDEQ"
     gene            1603..1908
                     /locus_tag="VD694_00550"
     CDS             1603..1908
                     /locus_tag="VD694_00550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11218.1"
                     /translation="MMSSLNGIKLSNNCDPYQISDGKHVMLMYKNKEDRAQAAAYWIN
                     HGVQEGAVCIYASVHALDQSHPLGIEKLCNKIKDCSENIHNKNLKIVDFRPPTLVPH"
     gene            1917..>2182
                     /locus_tag="VD694_00555"
     CDS             1917..>2182
                     /locus_tag="VD694_00555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11219.1"
                     /translation="MFPFEKLKNHLERTIDELVAKGKKDKIIVFADAACRMYELELFD
                     KSEILERWWHNVHDKWLDNNYHIAVICPHLEFTLNHKQDSKFRI"
BASE COUNT          798 a          325 c          471 g          588 t
ORIGIN      
        1 aataaataat tgaggaccga ttattatccc aaatgggaaa atatgtttta cttataaggt
       61 ggacggatca agggatgaaa aacgtaagag acgataaagc gtgctgattc atttaagacg
      121 tacctcgaga agaaaggggg aaaattgaaa gatatataac aaacatttgg aaaatttgac
      181 ataatgatta ctgcagaatt acacagcgat gaggttgcaa tgtcagtatc actttcttca
      241 ggagcactgg gcaatgttcg tattacaact ctataggcgt tcgatctaga cgagaccaaa
      301 aaataattgg gacattgaaa taaacctcta ccagtcagag caacagatca gcttcaatta
      361 gagttattag agttagaaac tctaatctaa cggcatatat ttgaattgcc tataaatatc
      421 gatacagaat atgtctaggt atgaccgcaa aaaaatggtt tgatgatgat gtttctctag
      481 aacagcttaa gaataagact gtagccgtga taggctatgg gatacaaggt agagctcagg
      541 ctaataatat gaaagattca ggaataaatg taattattgg actgtacaag ggagcaaaat
      601 catggaaatt agcagaaagt gacggacatg tagttaaaga agtaaaggaa gcatcacaac
      661 tggcagatat agttcatatt cttactccag atatggaaca agcaaatgtt tacaaaaacg
      721 atatagagcc tggacttact gaaggaaaaa cactgtcttt ttcgcatggt gcagcaattc
      781 actggaagtg gatagtacct cccaaaaatg ttgacgtagt aatggtcgcg cctaaaggac
      841 caggtcagag agttcgagaa ctatatcagg aaggattcgg gactccgtca cttgttgcgg
      901 tatatcgaga ctcttccaaa aatgccatga aaactgtttt ggcaatggcc aaggcaatag
      961 gcagtacaag gccaggagtt attgagacga catttaaaga agaagttgaa acagattggt
     1021 ttggagaaca agtagatttg tgcggcggtg ctcattctct ggtactgaat gcatttgaaa
     1081 ctttggtcga agctggttac caaccagaag tagcttatta tgaatgcctg catgaactaa
     1141 aattaattgt agatctgata tacaaatatg gtattactgg gatgtacaat cgagttagcg
     1201 aaactgcaag atatggtggt ctcactagag gaccgatggt aataaatgaa caagcaaaag
     1261 aaaatatgaa aaaggtgtta aaggacatac aatcaggaga atttgcaaac gaatgggtaa
     1321 gcatatacaa gaaggacgga aagaactcat ttgttagatt catgaatcaa ctcgaaaaga
     1381 atcaattaga aactgttggt aaagaaatga gaaagatgat gtggaaagac gagcaataag
     1441 gaatcaaaat acagctcaaa tcagggatct catcaatact ttatgatttg acgttaagaa
     1501 tgtcatttga taaagtatac atttttgcta ttgcatcgtt aagacaagtg taataaacta
     1561 ctatgcgcaa gtaattatcc ggtgtttcat tgcttcagtt aaatgatgag ttcattaaac
     1621 gggattaaat tgagtaacaa ttgtgatccg tatcaaatct cagatggcaa acatgttatg
     1681 ctcatgtaca agaataaaga agatcgggca caagcagctg cctattggat taatcatggg
     1741 gttcaagagg gagctgtttg tatttatgca tctgttcatg cattggatca atcacaccca
     1801 ttgggaatag aaaagttatg taacaaaata aaagattgta gtgagaatat ccacaataaa
     1861 aatttgaaaa ttgttgattt tagacccccc actttagttc cgcattaagt gccaacttgt
     1921 tcccatttga gaaactcaag aatcacctag agcgtacaat tgatgagctt gtagcaaaag
     1981 gaaaaaaaga taagataatt gtatttgcag atgcagcgtg tagaatgtat gaattagaat
     2041 tatttgacaa gtcggagatt cttgagagat ggtggcacaa tgttcatgac aaatggctcg
     2101 acaacaatta tcatattgca gtaatatgtc ctcaccttga atttacatta aatcataaac
     2161 aagattcgaa attcagaatt tt
//
LOCUS       DASPFX010000028         2040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1269513, whole genome shotgun sequence.
ACCESSION   DASPFX010000028 DASPFX010000000
VERSION     DASPFX010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1269513"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1122
                     /locus_tag="VD694_00560"
     CDS             <1..1122
                     /locus_tag="VD694_00560"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HXW11220.1"
                     /translation="RYVERIVLEFRELVDYWITIGEPVATIIGGGYISGLWPPGFFLK
                     GKRARIVLHNLIEAHVQAYNKITALDSIDADGDGFTNKVGFTHLMMEVIPAEQCKIFG
                     ITMKDNIEAAKNFSYFTNDYFINAVIEGEEDLNYLNTLQRRNKSSEEFIVHEDWKNKA
                     DFIGLDYYRRVYVYSNKIVSLTSAKFVGGVPINDLSTANKQPHNILNTLGWEIYPKGL
                     YKVIMRIEKEWNGIPIFITENGVADKHDGYRAPFIVSHLQQVRRAMDDGAHIMGYLHW
                     SLMDNYEWLDNYRPEGKFGLFSIDFEEQHPSDSGLMRKKTKGAEALELIIKESVSQSK
                     NGAISDSAIAAAQNQFGTFTEDGSRVIYPWMTKEQWING"
     gene            1402..>2040
                     /locus_tag="VD694_00565"
     CDS             1402..>2040
                     /locus_tag="VD694_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11221.1"
                     /translation="MERKENRDINVSTLPRYKDGRKKLVNGFEYSHSKEIRYSLFPFS
                     EKKLLNERASKLVYIYIAIPNLQKPTIYAKMSTIILIVIIPVLLAVFFIFSLYFFPHF
                     YLATRQASQALPKIINVNVNTSSSALSDSGILHLGESFVVTITSANLGDTADFQIASI
                     SFPNITSNIHDNIANKIVSILHHNFTQSPVFISIGDEIGSGYTGLTKTTTAKY"
BASE COUNT          703 a          332 c          384 g          621 t
ORIGIN      
        1 agatacgtgg aacgaatagt tttagaattt agagagctag ttgattattg gataacaata
       61 ggtgaacctg tagctacaat aattggaggc ggttatattt ctggattatg gccacctggt
      121 tttttcctca aggggaaaag agcaagaatt gtattacaca atcttatcga agcacatgtt
      181 caagcataca acaagatcac tgcccttgat agtatcgacg cagatggaga tggctttaca
      241 aataaagttg gttttactca tctgatgatg gaggtcattc cagctgaaca atgtaaaata
      301 ttcggtataa caatgaaaga taatattgaa gctgcaaaaa attttagtta cttcacaaat
      361 gattacttta ttaatgccgt cattgaaggt gaggaagatc taaactatct gaacacactt
      421 caaagacgca ataagagtag tgaagaattt attgtacacg aggactggaa aaacaaagct
      481 gatttcattg gtcttgatta ctatcgcagg gtttatgttt attctaataa gatcgtttct
      541 ttaacctctg caaagtttgt tgggggagtt ccaataaatg atctaagtac ggcaaataaa
      601 caacctcata acatactaaa tactctcggg tgggaaatct accccaaagg gttgtataag
      661 gtgattatga gaattgaaaa ggaatggaat ggtataccga tttttataac tgaaaatggt
      721 gtcgctgata aacatgacgg atatcgtgct ccattcattg tgtcacatct tcaacaagtt
      781 agaagagcaa tggatgatgg tgctcatatt atgggttacc tacattggtc actcatggat
      841 aactatgaat ggcttgataa ttatagacct gaaggaaagt ttggactgtt tagcatagac
      901 tttgaggagc aacatccttc agattcaggt cttatgagga aaaaaactaa aggtgctgaa
      961 gcactcgaat tgatcatcaa agaatcagtc tctcaaagca agaatggcgc aatatctgat
     1021 tctgcaatag ctgcagctca gaatcaattt ggaacattta ccgaagacgg ttcacgtgta
     1081 atttatcctt ggatgacaaa agaacaatgg ataaatggct gatagctgat atgttggtca
     1141 tcaaccaaaa tagtagaaaa tatcgatacg ttgatgtgaa cgctgatctt tattattcta
     1201 aaggtaatag tttgtagtcc tgatgcaagc ttggaaggca atgggtttgg ttatacaaca
     1261 agaatttaaa gtcataccat aaccgatttt gaattttgaa ttttcaatag gtttgggaca
     1321 acagatatcc tactcactct cttcttgaag gattgcctga tttatttaaa gctcaagacc
     1381 atgtataaac atataataac attggaaaga aaggaaaata gggatatcaa tgtatcaacc
     1441 ttaccgcgtt acaaggatgg acgtaaaaaa ctagtcaatg gttttgaata tagccatagt
     1501 aaagagatac ggtactcact gtttcctttc agtgaaaaaa aattattgaa tgaaagagct
     1561 tccaagttgg tttatattta tattgcaata cctaatcttc aaaaaccaac tatatacgcg
     1621 aaaatgtcta ccatcattct gatagtaata attccagttc tattagccgt attttttatc
     1681 ttttcattgt atttctttcc acatttttat ttggccacac gacaggcttc acaagcatta
     1741 ccaaagatca taaatgtcaa tgtaaatacc tcgtcatcag cattatctga tagcgggatc
     1801 ttacatttag gagaatcatt tgttgtaact ataacaagcg ccaatcttgg agatacagca
     1861 gactttcaaa tcgcttcaat atcgtttcct aatattacaa gtaatattca cgacaacatt
     1921 gcgaataaaa ttgtaagcat attacatcat aattttactc aaagcccggt cttcatatca
     1981 attggtgatg aaattggatc cggatatacc ggattaacta aaacaacaac tgcaaaatat
//
LOCUS       DASPFX010000029         3495 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1269107, whole genome shotgun sequence.
ACCESSION   DASPFX010000029 DASPFX010000000
VERSION     DASPFX010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3495
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1269107"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            270..833
                     /locus_tag="VD694_00570"
     CDS             270..833
                     /locus_tag="VD694_00570"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HXW11222.1"
                     /translation="MLKTIKCYPASIKRKEDIEKIFDDCADAGNCFCAFWHLPKKACE
                     DKWGEANCRWFFETVRNYGPLGIIAYINGEPAGWCGLAPRSKYDRLRRSRFFSAVDNR
                     PVWSVTCFVVRKKFRRRELSRLLLREAVVFAQSQGAEWIEGYPFDLDQGNSRGDLYPG
                     ILSVFVAEGFLEVTRRLPTRPVVRLSI"
     gene            complement(898..1641)
                     /locus_tag="VD694_00575"
     CDS             complement(898..1641)
                     /locus_tag="VD694_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11223.1"
                     /translation="MSVLASAGICQSSLSTQLALGQNIIPDNSTLSSAVEEGIVFQPH
                     SKPYNLTYGEWTAKWWQWAYSLPREANPAYDDTGKYCSENQRGPVWFLPGTYGKSVIR
                     ECTVPTGTAILFPILNSECSFAEFPELKTITDLSICARTFQDQVTDLHASIDGQEIPK
                     IDLEKYRTQSPLFNFTLLENNILGLPANTTTSAISDGNWVFVKPLKPGKHAISFMGDV
                     TSVDKNTSAESFAFPSGWNYSTTYELIIK"
     gene            1923..2054
                     /locus_tag="VD694_00580"
     CDS             1923..2054
                     /locus_tag="VD694_00580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11224.1"
                     /translation="MNRALIFQGGGSLGAYKAGAYQAINEDTSEYLRTESFRTERRD"
     gene            2463..2687
                     /locus_tag="VD694_00585"
     CDS             2463..2687
                     /locus_tag="VD694_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11225.1"
                     /translation="MISLLAPGICPLDKTIKTGTTATTQTRQQQQGSTSIVTEITSRQ
                     IIRVTRQNHGTSRIMTAAKLEIAKLFMNEY"
     gene            2853..3113
                     /locus_tag="VD694_00590"
     CDS             2853..3113
                     /locus_tag="VD694_00590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11226.1"
                     /translation="MNTIDNRDIKSYVSYLFDDCTLQINNDPPVSGKDQITKHLTSLW
                     TSFKGNGHDLLNIYGTDSSFSSEIVNHFALHDGKEITVNAVG"
BASE COUNT         1108 a          610 c          706 g         1071 t
ORIGIN      
        1 aatttggagt gccccccaat gggacattgc cagaacttgt catgattgta aagttcttgg
       61 atgtatatgg tactcctcac aaccaattac tacatttgcc aagaactata tgaatggttt
      121 atcgaaaatg attagtcagc aaaaaccagg atatatggag gaagcatctt aaaccttgaa
      181 catcgtcgct acctgtgtta agatcgtgtc tgcctctaca atagtacaat taagaaaaaa
      241 catatactta tgattgtagg atatatctct tgcttaaaac tatcaaatgt taccctgcat
      301 cgattaaacg taaagaagat atcgaaaaaa tattcgatga ttgtgctgat gcggggaatt
      361 gcttttgtgc tttttggcac ctcccgaaaa aggcatgtga agacaagtgg ggagaagcaa
      421 attgtaggtg gtttttcgaa acagtacgca attatggacc tctcgggatt attgcttaca
      481 tcaacggcga acccgctggc tggtgcggct tagctccgcg aagtaaatac gaccgtctca
      541 ggcgatctag gtttttttcg gcagtggata atcgcccagt atggtcagtg acttgttttg
      601 tggttcggaa aaagttccgt cgtcgagaac tttctcgact attgctaagg gaagcagtcg
      661 tatttgccca atctcagggg gcagagtgga ttgaaggcta tccattcgat ctagaccaag
      721 ggaattcgcg aggggacctt tatcctggta tattatctgt cttcgtggcc gaaggttttt
      781 tggaggttac ccgacgatta ccaacaagac ctgtagtacg tctcagtatc tgatcctatt
      841 atctaactaa agatcaaaat ctgactgaca aggataacca acggagccca cctgtgatta
      901 tttgataata agttcgtaag ttgtgctgta attccatcca gatggaaatg caaaggattc
      961 cgcagaagta tttttatcaa cactagtcac atctcccata aaactaatag catgcttgcc
     1021 aggttttagt ggttttacaa acacccaatt gccgtctgaa atcgcagagg ttgttgtatt
     1081 tgcaggaaga cctaagatat tgttttcgag cagagtgaaa ttgaacaggg gcgactgtgt
     1141 acgatacttt tctaggtcta tttttggaat ctcttgaccg tcaatgctag catgcaggtc
     1201 agtaacctgg tcttgaaaag ttcttgcaca aatactcaaa tccgtgattg ttttgagttc
     1261 aggaaattct gcaaacgaac attctgaatt aagtataggg aaaagaattg ctgttccagt
     1321 aggaacagtg cattctctaa ttactgattt gccataagtc ccaggaagga accagacagg
     1381 ccctcgctga ttttctgaac agtatttacc tgtgtcatca tatgcaggat tagcttccct
     1441 tggtagtgaa taagcccact gccaccattt agctgtccat tctccatagg taagattata
     1501 gggtttagaa tgtggttgaa atactattcc ttcctccaca gccgaggata aggtcgaatt
     1561 atctgggatt atattctgcc ctagggctaa ttgcgttgat agactagact gacatattcc
     1621 agctgatgct aacacactca ttatatagag taccgagagg atttttaggt tattttgcat
     1681 ttcaatgatt aatgctttaa aaaatatgat atcgattatt tattcgtacc aaaaactcct
     1741 ttgcgagacg ttcgttactt gtatcaagaa attctccttt aagtaatcct taggttctat
     1801 gttagataat tcaaatactt gaagaactgg acaagagttt ctaaacgtgc attttcacct
     1861 tgttagcaca aattatgctt attaaacgga cattatagga taaaagatct atgaactcta
     1921 acatgaatag agctttgata tttcaagggg gaggttcgct tggtgcttat aaagcaggtg
     1981 cttatcaggc cataaatgag gatacttcag aataccttcg aactgagagc tttcgaactg
     2041 agagaagaga ctaagagcct ttgtttcata tcgtgtctgg aacttgtggc acaggtgaga
     2101 taaatgctat atttcaaaca agatatttga cttttaggaa accacagtgt gatagctaat
     2161 ttaagatgga atgacagaaa ctaaagagca gatgaaggag ataattgcca gagtaagaag
     2221 ggaactcttg tacataataa ttcttagact ttttgtgtct cccatcgaaa acatagcttc
     2281 gttgaaacat tttaagtctc acataccatg tattatatag taacggatga aagtattaat
     2341 ggatgacaga aaagagagtc tggagacgat gttgtaatac tttctggtca taatgcatgg
     2401 atactgggag atgaaccttt tggcgtcgat catctttagt aacggcagaa aattgcatga
     2461 taatgatatc tctacttgct cctggaatat gtccattaga caaaacaata aagacaggga
     2521 cgacggcaac aacacaaact cggcagcaac aacaaggttc tacatctata gtaacagaaa
     2581 ttacttcacg tcagattatc agggtaacta gacagaacca tggcacttcg agaatcatga
     2641 cagcagcaaa gttagaaata gcaaaattat ttatgaacga gtactgaata gtgaatcaac
     2701 ccagtcgtaa ctatttatta tacaacaaac caacagataa atattataat attctattag
     2761 aattttaacc ttgaaatgga tgcaagaata aaaagcaata aactcagaat aaaccaactt
     2821 tcagaaaaag ctttcaatgg tatctaggat acttgaatac tatcgataat agagatatca
     2881 aatcttatgt aagctattta tttgatgatt gtactctgca aataaataat gatccgccag
     2941 taagtggaaa agatcagatt actaaacatc ttacttcact ttggacttca tttaagggaa
     3001 atggccatga tttattaaat atctatggta ccgattcatc tttttcatct gagatagtaa
     3061 atcatttcgc tttgcatgat ggaaaagaaa ttactgtaaa tgcagttgga taattagata
     3121 ggaatggaga agggttacta acttcagtaa ggctatatgc tgatttttcg cctttatttt
     3181 ctaaaatgta ggatagaggg gatagttgtc acatattatt aatgaagata tttttaccta
     3241 ttatcgatcc actttctagt aaagcatatg cttgagttgc ctgacctatc gacattaaat
     3301 tggcaatcac aggcttgata ttttgcccct tcaggcaata atttcgttat ttttaatttt
     3361 tcttgcaaag gtcttgcctt taggagatcg agacaacttg gttaaagtgt ttaagattat
     3421 agaattgtaa ttaagccttg agttaatctc tatgtgcatt gcctccaggt actaattgat
     3481 cgtctgatga ttgca
//
LOCUS       DASPFX010000030         6708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1838665, whole genome shotgun sequence.
ACCESSION   DASPFX010000030 DASPFX010000000
VERSION     DASPFX010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6708
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1838665"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..715
                     /locus_tag="VD694_00595"
     CDS             <1..715
                     /locus_tag="VD694_00595"
                     /EC_number="2.7.4.26"
                     /inference="COORDINATES: protein motif:HMM:NF040647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isopentenyl phosphate kinase"
                     /protein_id="HXW11227.1"
                     /translation="MNNIAIDQIFKMFMSVKVPIIIVHGGGSFGHYWSVKYDMHSKPD
                     NYPAEGIAVVHESMISLNHKLVKSMIKFKLNPYSVSPFSFVSNKKPHARKIVELASMT
                     GDKIIPVTYGDIVYRTNHKYSILSGDELMTMLSYAVRPKKVIFAVNVDGIYRDPRKKE
                     LINTVEEESLIKFSNVNFDVTGGMKRKVREALKISHAGVNVHFVNGFKPDRLLQILDN
                     KKTKGTVIKGKRSSKRNAR"
     gene            705..1787
                     /gene="fni"
                     /locus_tag="VD694_00600"
     CDS             705..1787
                     /gene="fni"
                     /locus_tag="VD694_00600"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004452 - isopentenyl-diphosphate
                     delta-isomerase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HXW11228.1"
                     /translation="MPDESDSPSDIEVIKQRKKEGIVIPLTRNVQAKESSTYLEYVKL
                     IHNALPEIDFDAVETSQRFLGHNFKAPIIIDSMTGGTPEATKINSRLSLAAEKFGLGM
                     GLGSQRAGLLSSELAETYSIARSNAPNAFLVANIGGAQLSKGLKIKEIKNMIQMIEAD
                     ALVVHLNPLQELIQPEGEPKYKGVLSKIKEICSNFDIPIIVKEVGAGISMDVAKRLQT
                     AGVSAINVAGSGGTSWAGVEKLRAETAHDSNKINLGELFWDWGIPTAVSLMEVRKSVK
                     IPVIASGGIRNGLEIAKCIALGADMCGMAFPFLRHASKSLESLYEFTNRTLTELRSAM
                     FLVGSKKINQLGKTRFIVTGELARVK"
     gene            1787..2788
                     /locus_tag="VD694_00605"
     CDS             1787..2788
                     /locus_tag="VD694_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HXW11229.1"
                     /translation="MDNLKDELSNVVSRVRNFTLSVLEGEPNRLYDAACTYLASGGKK
                     LRPFMVIKSCEMFSGLEEKALPAAAAVELIHNFSLIHDDIMDNDDIRHGISTVHKKFG
                     LPIALIAGDILFSKAFQVLSLQGKKVGHNDTIIAEMNSILSTSCVYVCEGQGLDIQMA
                     SSNKIPTIEEYLEMIRKKTASLFEVSCALGVLSSKEPSAENVSNLSKFGRYTGIAFQL
                     VDDLIGVTGDPKLTGKAVGNDIREGKKTFPILLALENADTSKREKIMKVFGFKGANHD
                     HVEAAVDAISSLNIEEEVRKTAHDNMIRAFESLNSYDETNAKNALVSSAKFIVERSL"
     gene            2793..4535
                     /gene="gltX"
                     /locus_tag="VD694_00610"
     CDS             2793..4535
                     /gene="gltX"
                     /locus_tag="VD694_00610"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HXW11230.1"
                     /translation="MKGNDEIHRLVNAIALKNAVEHSGSTNVNTVLAKILSLKPELKK
                     EIKTLMEEIKTIVDSVNKMGVDQQKKYLDELESTEGKLDSKSTQGRMDSHTLPELEMT
                     GTKVVTRFPPEPNGYPHIGHAKAAIIDEEYARMYDGKLILRFDDTNPLNEKLEYYEAI
                     GSGLEWLGIKPDIIKNTSDDIFVLHDYGKKLTLGGNAYVCTCDTNKIHEMRMQQVECA
                     CRSNIDNPEKNKERLDKLFDGTYHQNEAIIRFKGNMQDNNTVLRDPTLFRIIEASHPL
                     LGEKVQVWPTYDFAAPVEDSLDGVSHALRSKEYELRNALYSDILDRLELRKPIVVEFS
                     RLDFENMPVSKRKIKQLIDDKQIAGWDDPRLLTLSALRKRGFDPRAIRSFVLSLGLTL
                     AESKPPFKTLESMNRKILEPIAIRFFFVKDPVRVIVKNAQDTKVVLRNHPNIDLGTRQ
                     VEVSNVIYISQDDAILVAEDEEIRLMELYNIKINEIDRENKVITASYLNNEIVKEMKK
                     IQWVSDRDKTNYTVLIPRELYIDDKFNPNSLERIDGYAERSVLQLKSHTPLQLIRFGF
                     CNTLDKTSAIFSHR"
     gene            4541..5410
                     /locus_tag="VD694_00615"
     CDS             4541..5410
                     /locus_tag="VD694_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HXW11231.1"
                     /translation="MKIGRIKIKDVGETYGIISPDGKKIITKLDFQEQTGVPIPQTIK
                     EFIVRGWINEVSKYISAIKFSNEVTYEDLLAPIQDPPKIVCLAFNYYDHARDAGLTPS
                     DEPVIFIKPRTTLNHPFSDVKCPQFVQRLDYEAELAIVIGKDTKNVDPEKAAESIFGY
                     TILHDVSARDIQFKDKQFTRGKGIDTFAPCGPWITTRDEINDPQNLQIITKVNGETRQ
                     NSSSSKMVISIDRIISSLSRIMTLESGDIISTGTPAGVAMSMKEPKYLKDGDIVEITI
                     ENLGTIRNKITFV"
     gene            5860..6702
                     /locus_tag="VD694_00620"
     CDS             5860..6702
                     /locus_tag="VD694_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HXW11232.1"
                     /translation="MVVDNKGIISYIRVLKEDLMIFRIKPSEGSVPDFKAGQFLTIGL
                     HVPSEGKIVRRAYSIASPPEQKNVFELLIRWVKKPVPGRLTTELFNRREQDEILWVKP
                     TGAFTIDEKKHDGTPDNRRMVLIGGGTGLAPFIAYALHLKSIGSKREVVILHGASYVD
                     ELSYRELLTDLENESLDSGKDKWNFRYRASVSRPQEWFNRSWNGQKGRVESFLRPKLG
                     TDKSPLEELVGESITPENTIFYVCGWQGTVDGALDYLIPKGFVTERNKRKDGSYDVKF
                     ESYG"
BASE COUNT         2315 a         1104 c         1436 g         1853 t
ORIGIN      
        1 tatgaacaat atagccatcg atcaaatatt taaaatgttt atgtctgtta aagtacccat
       61 catcatcgtt catggcggtg gatcttttgg gcattattgg tcagtgaagt atgacatgca
      121 ttccaaaccc gataattatc cagcagaggg tatagcagta gttcatgaat caatgatttc
      181 attaaaccat aaattagtca agtcgatgat aaaattcaag ttgaatccat attctgtttc
      241 acctttttca tttgtttcaa ataaaaagcc gcatgcaaga aagatcgttg aattggcatc
      301 aatgaccggc gataaaataa taccggtaac atatggtgat attgtttata gaacgaatca
      361 taaatactcg atactatcag gtgatgaatt gatgacaatg ctctcatacg cagtaagacc
      421 aaaaaaagta atctttgcag tgaatgttga tgggatttat agagatcccc gaaaaaagga
      481 gctgataaat acggtcgaag aagaatcact aatcaaattt tcaaatgtaa attttgacgt
      541 aacaggaggg atgaagagaa aggttcgtga agcattaaaa atctcgcatg ctggtgttaa
      601 tgttcatttt gtaaatggct tcaagccgga tagactctta caaattctag ataacaagaa
      661 aaccaaaggt acagtaataa agggaaaaag gtccagtaag cgaaatgccc gatgaatcgg
      721 actctccttc agacattgaa gtaataaaac aacgaaagaa ggaaggaata gttattccgt
      781 taactaggaa cgttcaagct aaagagtcat ctacgtattt ggaatatgta aagttgattc
      841 acaatgcctt accagagatt gattttgatg ctgtcgaaac gagtcaaagg ttccttggcc
      901 acaacttcaa agcaccaatt ataatcgatt ctatgacagg aggaacccct gaagctacaa
      961 aaataaattc taggctttct cttgctgcgg agaaatttgg acttggtatg ggattaggga
     1021 gtcaaagggc aggtctcttg agcagcgaac ttgctgaaac atactcgata gccagatcca
     1081 atgccccaaa tgcgtttctg gtggcaaata taggaggggc gcagctttca aagggattga
     1141 aaatcaagga aataaagaat atgattcaaa tgattgaagc tgacgcgctt gttgtacact
     1201 tgaatccact acaagaattg attcaaccag agggtgaacc aaagtataag ggcgtgttat
     1261 caaagatcaa agaaatttgc tcaaattttg atattccaat tattgtaaaa gaggttggag
     1321 ctgggatttc aatggatgtt gccaaaaggt tacagactgc aggagtttcc gcaattaatg
     1381 ttgcagggtc tggcggaacg agctgggcag gtgttgaaaa attaagggca gaaactgcgc
     1441 atgactctaa taagataaat ctaggagaat tgttttggga ttggggcatc cctactgcag
     1501 taagtttgat ggaagtgaga aaatctgtaa agattccggt tattgcatca ggcggaattc
     1561 gtaatggcct agaaatcgcc aaatgtatag cattaggggc agacatgtgc gggatggctt
     1621 ttccgtttct cagacatgct tcaaaatcat tggaaagctt gtatgaattt accaatagga
     1681 ctttgactga attaaggagt gcaatgtttc ttgttggcag taaaaaaata aaccaactag
     1741 gaaaaactag atttatagta actggagaat tagctagggt gaaataatgg ataatttgaa
     1801 agacgaactt agcaacgttg tatcacgtgt gagaaacttt acattatctg ttcttgaggg
     1861 tgaaccaaac agattgtatg atgcagcgtg cacatacctt gctagtggag gaaaaaagct
     1921 caggccgttc atggttataa aaagttgtga aatgttttct ggccttgagg aaaaagcgtt
     1981 accagctgct gcagcagtag aattgataca taacttttct ctaattcatg atgacatcat
     2041 ggataatgat gatattcgtc atggtatctc taccgtccat aagaaatttg gtttaccaat
     2101 tgcactcatt gcaggagata tccttttctc aaaagccttt caggtacttt cattgcaggg
     2161 aaagaaagtt ggacataatg acactataat tgccgaaatg aatagtattt tgtctacctc
     2221 ctgtgtttat gtgtgcgaag gtcaaggtct tgacatacaa atggcctcca gcaacaaaat
     2281 accaacaata gaagaatact tggagatgat acgaaagaaa actgcatctc tgtttgaagt
     2341 ttcatgtgcg ctaggggttc tgtcttccaa agaaccctct gccgagaatg taagcaacct
     2401 ttctaaattt ggacgataca caggaattgc gtttcaattg gtagatgacc tgattggtgt
     2461 tacaggtgat cccaaactaa ctggcaaagc agttgggaac gacattagag aaggtaaaaa
     2521 gacctttccg atactattag cactagaaaa tgcagacact agtaaaagag aaaaaatcat
     2581 gaaggtattt ggattcaaag gagcaaacca cgaccatgtt gaagccgccg ttgatgctat
     2641 atcatcattg aatatagaag aagaagtgcg aaaaactgct catgataaca tgattagagc
     2701 atttgaatcc ttaaatagtt acgatgaaac taacgcgaaa aatgcacttg tgtcttctgc
     2761 caaatttata gtcgaaagga gtttatagtc ttatgaaggg taacgatgaa attcatagac
     2821 tagtcaatgc tatagcgcta aaaaacgcag tagaacattc aggcagtaca aatgttaata
     2881 cagtgttggc taaaattttg agtctaaaac cagagctgaa aaaggaaata aagactttga
     2941 tggaagaaat caaaaccatc gtagattccg taaataaaat gggtgtcgac cagcagaaaa
     3001 aatatcttga tgaattagaa tcaacagaag gcaagctgga ctcaaagtcg acacaagggc
     3061 gtatggactc acacacattg ccagagcttg aaatgacagg gaccaaagta gttaccagat
     3121 ttccacctga gcctaacgga tatcctcata tcggtcacgc aaaagcagcc ataattgatg
     3181 aggaatatgc tagaatgtat gatggtaaat tgattctacg ttttgatgat actaatcctc
     3241 tgaatgaaaa attagagtat tatgaagcta ttgggagtgg gttagaatgg ttagggatca
     3301 agcctgacat tataaaaaat acatctgatg acatttttgt tctacatgat tatggtaaaa
     3361 aactaacctt aggcgggaat gcatatgttt gtacgtgtga taccaataag attcacgaaa
     3421 tgagaatgca acaggttgaa tgcgcgtgta gaagcaatat tgataatcca gaaaaaaaca
     3481 aagaaaggct ggacaaatta tttgatggta cttatcatca gaatgaggcc attataagat
     3541 tcaaaggaaa tatgcaggat aacaatactg ttcttagaga tcctaccctc tttagaataa
     3601 tagaagcttc gcatccactt ttgggtgaaa aagtacaggt gtggcccacc tacgattttg
     3661 ctgcaccagt tgaagattct cttgatggcg taagtcatgc actaagaagc aaggagtatg
     3721 agttacgcaa tgcactgtat tcagatatcc ttgacagatt ggaattacgg aagccaatag
     3781 ttgttgaatt ctcgagattg gattttgaaa atatgccagt ttccaagaga aagattaaac
     3841 aactgataga tgataaacag attgctggtt gggatgatcc tcgtctcctc actttgtcag
     3901 cattgcgcaa gcggggtttt gatccgagag caatcagaag ctttgtttta agccttggat
     3961 taacactagc agaatcaaaa ccgccgttta agacattaga atcgatgaat aggaaaatcc
     4021 ttgaacctat tgcaattaga tttttctttg tcaaagatcc agtaagagta atagtgaaaa
     4081 atgctcaaga tacgaaagta gtcctgagaa atcatccgaa tattgatctt ggcacgagac
     4141 aagttgaagt ttccaatgtg atttatattt cacaggatga tgccatactt gttgcggaag
     4201 atgaagaaat tagactcatg gaattatata atataaaaat taatgagata gatcgggaga
     4261 ataaagtaat tacagcttct tatctaaata atgagattgt aaaagaaatg aagaaaattc
     4321 aatgggtatc agacagggac aagacaaatt acaccgttct gattcccagg gaactgtaca
     4381 ttgatgataa gtttaatcca aatagtttgg aacgtattga tggatatgca gaacgttcgg
     4441 tattacagct aaaatcacac actccactac aattaattag atttggtttt tgcaatactc
     4501 tagacaaaac ttcggcaatt tttagccata ggtagacaaa atgaaaatcg gaaggatcaa
     4561 aataaaagat gtcggagaaa catatggaat aatctcccct gatgggaaaa agataattac
     4621 aaagcttgat tttcaggagc agactggggt tccaatccct cagaccatta aagaattcat
     4681 tgtaagagga tggattaatg aagttagcaa gtatatttca gctatcaaat ttagtaacga
     4741 agttacctat gaagatttac tagcacccat tcaggatcca ccaaaaatag tttgtttggc
     4801 gtttaattac tacgatcatg caagagatgc aggactcaca ccctcagacg agcctgttat
     4861 ttttattaaa ccccgaacta ctctaaatca tccttttagt gatgtcaagt gtccgcaatt
     4921 tgttcaacgc cttgactatg aggcggagtt agcaattgtt attgggaagg ataccaaaaa
     4981 tgtagatccc gaaaaagccg ccgaatcaat atttggatat acaattctac acgatgtttc
     5041 agctagagac atacagttca aagacaagca atttacaaga ggaaaaggca ttgatacctt
     5101 tgctccatgt ggtccttgga taacaacaag ggacgaaatc aatgatccgc aaaacctaca
     5161 gataatcaca aaagtcaacg gcgaaactcg gcaaaactcc tccagcagca aaatggtcat
     5221 atcgatcgat agaataatat caagtttaag tcgaataatg acattagaat ctggagatat
     5281 catatctacc ggaactcccg caggggtagc tatgtcaatg aaagaaccaa agtatctaaa
     5341 ggatggggac atcgtagaaa taacgattga aaacctgggt acaatcagaa ataaaattac
     5401 ttttgtctag cattgagact atttgggtgg gctcacggtg tatcttgcgt gatctttctt
     5461 aatcgggtta cttccctttc caaaatatga caataactct tgtacaattc cgtcaatgtc
     5521 gaccgtacac ttgctaactg gattgaaata ttgagagcct gtaaacatgt atccatggag
     5581 cgttcagttg caaatgaatt cattgacttt ttgaatgaat ctagcagaag ttgatgctca
     5641 gaactatttt cattgattaa tttctcaata tcatccacac ttttagaatc cttttcatga
     5701 aaattgtcaa atttgaacat atcctatctt atggatactc tgaaataaat taatttcatc
     5761 ggcattttac taaaacagca acatattttc cttgaaatta cgccgataaa gcttcaaatt
     5821 aataatgtat ttatttgccg gctcgatttt cagatttgta tggtggtaga caacaagggg
     5881 ataatatcgt atatccgcgt attgaaggaa gatttgatga tattcagaat aaagccatcc
     5941 gaagggagtg taccggattt caaggcaggt caattcttga caattggact gcatgttccc
     6001 tctgaaggca agatagttag aagagcatac tcgatagcat cacctccaga gcaaaaaaac
     6061 gtatttgagc tgcttataag atgggttaag aaacctgtgc caggtcgatt gactacagaa
     6121 ttattcaata gaagagaaca ggatgaaatt ctttgggtaa agccaactgg tgcttttaca
     6181 atagacgaaa agaaacatga tggaactcca gataatagaa gaatggttct tatcggaggt
     6241 ggaactggac tggcgccatt tattgcatat gcgcttcatt taaaatcgat aggtagcaag
     6301 cgtgaggtag taatattaca cggtgcaagt tacgtagacg agcttagtta tagagagctt
     6361 ttgacagacc ttgagaacga aagtttggat agtggtaaag ataaatggaa tttcaggtat
     6421 cgagctagtg ttagtagacc tcaggaatgg ttcaatagaa gttggaatgg tcagaaagga
     6481 agagttgaat cgttcttgcg ccccaaatta ggaacggata aatcccctct tgaggagctc
     6541 gttggagaat cgattacacc tgaaaatacc attttctatg tgtgtggttg gcagggaaca
     6601 gttgatggag cattggacta tcttattcca aagggctttg taacagaaag aaataagaga
     6661 aaagatggaa gttatgatgt gaagttcgaa tcttacggat agattcca
//
LOCUS       DASPFX010000031         2900 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_841804, whole genome shotgun sequence.
ACCESSION   DASPFX010000031 DASPFX010000000
VERSION     DASPFX010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_841804"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..366
                     /locus_tag="VD694_00625"
     CDS             148..366
                     /locus_tag="VD694_00625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11233.1"
                     /translation="MTFSSNGTIRGNIEVTNSGDLVSLSKGNKGTSAQGQGVVTTKDC
                     SEKANYTFLQVGKAITKDGKSWERSLKY"
     gene            complement(443..778)
                     /locus_tag="VD694_00630"
     CDS             complement(443..778)
                     /locus_tag="VD694_00630"
                     /inference="COORDINATES: protein motif:HMM:NF016173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase domain-containing protein"
                     /protein_id="HXW11234.1"
                     /translation="MSRNFTCSSSLPWNFKRNLEVKDVFKRICKLVINLNNSTNVRFP
                     DSGASCVMGIGYNAWLDLHLPVPIPKELENFVPIVGEKHTAVCSKGDFQKNLGLLVGT
                     LLLQFSIFA"
     gene            842..1549
                     /locus_tag="VD694_00635"
     CDS             842..1549
                     /locus_tag="VD694_00635"
                     /inference="COORDINATES: protein motif:HMM:NF019159.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HXW11235.1"
                     /translation="MDHSLPNVSGFIVSTSNGSIGYTADIRFHGRHQENSERFVEECR
                     RAGLEILLCEGTRIKESISPSESSVERDVKNIVNKTKNLVVCNYPAKDLDRFLSFYNA
                     AKDSGRFMVIDLKQAYILTLFQTSEIWKNTLPKPTDINLKIYIPRRGWGLIDKDINFW
                     TKRVKKWLVHFGLIRKDSEWYHIHVSGHGSRDQLQHIVKDCNSKRVIPIHTENEEYYT
                     NWHNNVVNVALNSQMEI"
     gene            complement(1985..2578)
                     /locus_tag="VD694_00640"
     CDS             complement(1985..2578)
                     /locus_tag="VD694_00640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11236.1"
                     /translation="MIFYIPYKIAKSFLKYYWHQICKYRIRQNYNPDKPPLIVQIIQN
                     EFGENYIPEPFEKMNLEKILRAEKMIAKKCFLEVIPRFQNIPEGISITSNRVFYEYDN
                     YSISQALLFLKVNHSFLRKAVMLEWAKFLEKINHGLPRLISKIEGEEFKRNSLNKYQL
                     ILEKYFGRCFYCDNQLSSGSMSTHVDHFIPWSYIFGI"
BASE COUNT          936 a          486 c          533 g          945 t
ORIGIN      
        1 tgggaagata cccttctgtc atgtacgcaa aaaggaaagt aacttcagtg aattgatgac
       61 gtcttcacgt accagttgga agagccattt ttcgaggata aaggaaagat cacggttcag
      121 aaagaaattg gcgacaataa aacacaaatg acattttcat ctaatgggac aattagggga
      181 aatatagaag taacaaactc aggagatctt gtaagcctgt ctaaaggtaa caagggaact
      241 tcagctcaag gacaaggagt agtgactaca aaggattgta gtgaaaaggc aaattatact
      301 ttcctacaag taggaaaggc aattactaaa gatggtaaga gttgggagcg cagtctgaag
      361 tactgactct actgacaagt tagcatttct tgatattatg ctatctttct ttattatcga
      421 agtagacgag atggggaatt tctcaagcaa agatagagaa ttgaagtaat aatgtaccta
      481 ctagcaatcc caaatttttt tgaaaatccc ctttcgaaca aactgctgtg tgcttttcac
      541 caactatagg tacgaagttc tctaactctt taggaattgg gacaggaaga tgaagatcaa
      601 gccaggcatt atatccgatt cccattacac aacttgcccc ggaatcagga aagcggacat
      661 tagttgaatt attgagattg ataaccaatt tgcaaatcct cttaaaaaca tctttaactt
      721 ctaaattcct tttaaaattc caaggaagag aggaggagca ggtaaaattc ctcgaaatgt
      781 caaattattt ggcgactcta aaccatttcg aatagattct attgaagtcg aacctatttc
      841 tgtggatcat tcacttccaa atgtaagcgg cttcatcgtc agtacttcaa atggttcgat
      901 tgggtatact gctgatatta gatttcatgg aaggcatcaa gaaaatagtg agagatttgt
      961 ggaggagtgt agaagggctg gattagagat tcttttgtgt gaaggaactc gaattaagga
     1021 atctatttct ccgagtgaat caagtgttga aagagatgtc aagaacatcg taaataaaac
     1081 gaagaaccta gtagtatgta attatccagc gaaagacttg gaccgttttc tttcctttta
     1141 taatgctgct aaggattcag gtagatttat ggttatcgat ttaaaacagg cctacatact
     1201 tactttattt caaacgtcag aaatatggaa gaatacgctt ccaaaaccta cagatatcaa
     1261 tctcaagata tacattccaa gacgtggatg gggtttgatt gacaaagaca tcaatttttg
     1321 gacgaagcgg gtaaaaaagt ggctcgttca ttttggacta atcaggaagg attcagaatg
     1381 gtatcacata catgtttcag gtcatggctc tcgggatcaa ctgcagcata tagtaaaaga
     1441 ttgtaatagt aagagagtaa taccaatcca tacagaaaat gaagagtatt atactaattg
     1501 gcataataac gtagtaaatg tagcgttgaa cagtcaaatg gaaatttagt aattcaattg
     1561 gttatcactg atttaattga gaaaatctgg gtcagtgatt tttggccagt ttaattcgca
     1621 gcatgcatca tggaggatcc tacctgccgc atgcatggtg catcattgtt tactcattcg
     1681 aatctgctcc tcgcattcca gtagtattca ataccggtta tttaattcga aaaagacata
     1741 ctatcactat gaaaaaatgg tccaatttat aggtctattt tggtaaatcc ataatctaga
     1801 cagttttggt aatacttatt gatgacttgt tcctggttac ttcccgcatc caatcttttt
     1861 aatgatttcc taagttcatc tattacattg gagtaatgca tttttcgact cactaattgt
     1921 ttgatgcgcc tttcattggg taatgagctg tgttttctta gattacattt cctgcaagtt
     1981 aagactaaat tccaaaaata taagaccaag ggatgaaatg gtctacatgc gtggacatgc
     2041 ttcctgaaga taactggtta tcgcagtaaa agcatctacc aaagtatttt tccaaaatta
     2101 gttgatattt gtttaacgaa tttcttttga attcttcacc ttctattttt gagatcagtc
     2161 ttggcaatcc atggtttatc ttttctaaga attttgccca ttcaagcatt actgcttttc
     2221 ttaaaaaaga gtgattgact ttcaaaaata acaatgcttg tgatatagaa taattatcat
     2281 attcataaaa tacccgattg gaagtgatgc ttattccttc cggaatattt tgaaatctag
     2341 gaattacttc aagaaagcat ttctttgcta tcatcttttc agcccttaat attttttcaa
     2401 gattcatctt ttcgaatggt tctggtatgt aattttctcc aaattcattt tgaattatct
     2461 gaactattaa cggaggttta tcaggattgt agttttgtct tatcctgtac ttgcatattt
     2521 gatgccaata atattttaga aaagattttg ctatcttata tggtatataa aagatcatta
     2581 gatcataccg acctggctac ctattctacc ttgctaccta tgcctaccta cctattctat
     2641 aatcttatat ggtatataca taagataaca tatgacgcct cttttaattt ttgttgaata
     2701 tatatgtcat caaaagtgta tgaataatca gtcagaaatc ttgctagcgg aatttgtttc
     2761 atatagcttt tttgcacgat ctatgtccat cgaaagctct ccttcgcctg caggaatttc
     2821 gtctattttg ctatgattaa atccatcata acctggaaca gaaccagaat cacaatttgc
     2881 tacgaatagt ctattatgaa
//
LOCUS       DASPFX010000032         2328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1411512, whole genome shotgun sequence.
ACCESSION   DASPFX010000032 DASPFX010000000
VERSION     DASPFX010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1411512"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VD694_00645"
     CDS             complement(<1..644)
                     /locus_tag="VD694_00645"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase / HUMPS
                     family protein"
                     /protein_id="HXW11237.1"
                     /translation="MNKVSPYRERIRQISENNNSSIRLALDLEARFHSHRYIGSLVEN
                     LHPFLCAVKINFHLILPFSKKEIQKINKVIHTFGLLSIADIKLNDISNTNFVTLQNLH
                     SMGFDSVIVNPIIGQKQLKSLVDFAHKLGMGVISLVYMSHENVSEGYGLDIVQGKSSR
                     RKILPLFEIFLKYASKSNVDGIVIGATHLRILKHVSSLSNIPIYSPGVGTQGGNP"
     gene            complement(637..1317)
                     /locus_tag="VD694_00650"
     CDS             complement(637..1317)
                     /locus_tag="VD694_00650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11238.1"
                     /translation="MQIKSPFFIEVSTIQDFGRLVCAFERTPLLTFSFKSGKDDLLAT
                     QIDFLNNVPVIYYVKHSCGGQYLAYRNNGGIEDVAIVENIQNPSVVYSPIISVEKFPT
                     IFWRRPKGAKNMNYAPIKLGNFQSLVKIASYKMIYEESPLPLFVFNSTKKSNYVIGTA
                     LNMAESDGVSYFYYATIPENPAYSFIKYSSLKSEDPAFTNNIEEHGYIYIKLIKLLGS
                     HPLVKVDE"
     gene            complement(1405..>2328)
                     /locus_tag="VD694_00655"
     CDS             complement(1405..>2328)
                     /locus_tag="VD694_00655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HXW11239.1"
                     /translation="KIAVRGGVGANAGHTFVYNNETFKVRMLPSAVLNPGTKLLIGAG
                     VLVTPNVLLDESQRYNAGNRTIIDNHCGIIDESHIRRDVEDAHLKKIVGTTGTGTGPA
                     NSDRALRILKLAKDVDELRSYLGNVSEIVNESIEKSQSVLIEGTQGTFLSLYHGDYPF
                     VTSKDVTASGICSDIGIGPKNVDEVILVFKAYVTRVGGGPLENELTIDEASKLGWVEY
                     GSVTGRQRRASPFNMELARKSVALNSATQIAVTKLDVVFPDCAGLKEYSKLTTEAKNF
                     VQNIEDKLGVDVMLIGTGAEINDIIDRRKEN"
BASE COUNT          684 a          468 c          403 g          773 t
ORIGIN      
        1 gggttacctc cctgagtacc tacgcctgga gaataaatag ggatgttaga caatgacgag
       61 acatgcttta aaatcctcaa gtgtgtagcg ccaataacta ttccatcaac attgcttttg
      121 ctagcatatt tcaaaaatat ctcaaagagt ggcaaaatct tacgtcggct tgattttccc
      181 tgaacaatat ctagtccata tccttcactt acattttcgt ggctcatata gactagggat
      241 attacaccca ttcccaattt gtgggcaaaa tcaaccaggg attttaattg tttttgtcct
      301 attattggat ttactattac cgagtcaaaa cccattgaat gtaagttctg taatgttaca
      361 aaattggtat tactgatgtc atttaatttg atatctgcaa ttgataacaa accaaatgta
      421 tgtataactt tatttatttt ctgaatttct tttttactaa atggcaaaat aagatgaaaa
      481 tttattttga cggcacacaa gaatgggtga agattttcaa ccaaacttcc aatatacctg
      541 tgactatgaa aacgtgcctc aaggtcaagc gctagtctta tggaactgtt attattttca
      601 gaaatttgcc taattcgttc tctatatgga gaaactttat tcatcgactt tcactaaagg
      661 atgtgaacct agtaacttta tcagtttaat gtaaatatat ccatgctcct caatgttatt
      721 ggtaaatgct gggtcttctg atttaagact ggaatacttg atgaacgaat atgcgggatt
      781 ctcgggaata gtggcataat aaaaatagga aaccccatca gattctgcca tgttcagagc
      841 tgtgcctatg acatagtttg acttttttgt actgttgaac acaaaaagag gaagcggtga
      901 ttcttcatat atcatcttgt aggacgctat ttttacaagg ctttgaaagt tgcccaactt
      961 aataggtgca taattcatat tttttgctcc tttaggtctt cgccaaaaga tggttggaaa
     1021 cttttcgact gagataatag gagaatacac tacagacgga ttctgaatat tttctactat
     1081 agccacatct tcgataccgc cgttatttct ataagcgaga tattgcccac cacatgaatg
     1141 tttgacgtag tatatcacag gtacgttatt tagaaaatca atttgagttg ctagcaaatc
     1201 gtccttgcct gacttgaatg aaaatgtaag aagtggggta cgttcaaagg cacatacaag
     1261 cctgccgaaa tcttgaatag tggaaacttc aatgaaaaaa ggtgatttaa tttgcaatgc
     1321 tctacgttct aaaataacat tattaaaatc atgcgaataa agatggttgt ttagtcaata
     1381 acatgttcca atgaatatga cgagctaatt ttcttttcgt ctatcaatta tatcgtttat
     1441 ctctgcccca gttcctatca gcattacatc tacgcctaat ttatcctcga tattttgaac
     1501 gaaattcttc gcctcagttg taagtttgga gtattctttt aagcccgcgc aatccggaaa
     1561 gacaacatct aatttagtaa cggcaatttg tgttgcactg tttaacgcta ccgactttct
     1621 tgctagttcc atattaaatg gtgatgctct cctttgtctg cctgtgacac ttccatattc
     1681 tacccagcct aacttactgg cctcatcaat cgtgagttcg ttttctaatg gtcctccacc
     1741 tacacgagtc acataggcct tgaagaccag gattacttcg tcaacattct tgggtcctat
     1801 tccaatatct gaacatattc ccgaggcagt aacatccttt gaagttacaa aagggtaatc
     1861 cccgtgatac aatgatagaa aagtaccttg tgttccctcg ataagaacag attgactttt
     1921 ttcaattgac tcattaacaa tttcagaaac gtttccaagg taacttctca attcatccac
     1981 gtcttttgct agctttagta tccttaaggc tcggtcagag tttgccgggc ccgtaccagt
     2041 accggtagtt ccaacgattt ttttcaaatg agcgtcttcc acatcacgcc ttatatggga
     2101 ctcatcaatt atgccacaat gattgtctat tatagtccta ttacccgcgt tgtatctttg
     2161 agattcatcc aatagtacat ttggtgtgac aagaactcct gctcctatca gaagtttggt
     2221 tccaggattc aaaacggcac ttggtaacat acggaccttg aaagtttcat tattatagac
     2281 aaacgtgtgt cctgcatttg ctccaactcc acctcttaca gctatttt
//
LOCUS       DASPFX010000033         2747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1267401, whole genome shotgun sequence.
ACCESSION   DASPFX010000033 DASPFX010000000
VERSION     DASPFX010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1267401"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..987
                     /locus_tag="VD694_00660"
     CDS             <1..987
                     /locus_tag="VD694_00660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11240.1"
                     /translation="KLIQTKLQGSYFVEKTKELDELDDRLHKIYSYKERYDSLSKIVN
                     AYQKTNLDSTYAEHSNLIKSKLRKIEDKKVKEKSLLELDNEVFVLSTKLAEMKAIFRD
                     RQEVENNLKNLESDKQLLETELMKMKENLAMRKTEHDNNLRQIESFIKKMDELKERVD
                     KIIFTDQIGVWLNQHFIPSIEQIESQVLISVKEEFNKLFQKWFYLLIEVGDIDVEINE
                     FFTPVVNQSGYHLEVDSLSGGEKTSIALAYRLALNEIIRRMIMLEDNLLILDEPTDGF
                     SKEQLVQIKYVLEELSAAQVIVVSHEKELEGFVETIFRVVKESEKSQVELAV"
     gene            1185..1466
                     /locus_tag="VD694_00665"
     CDS             1185..1466
                     /locus_tag="VD694_00665"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HXW11241.1"
                     /translation="MLADKIKCSHILVKKQSEALLILERLKKGESFDKLAKELSIDRG
                     SGKRGGDLGYFGRGAMVKPFEVASFNLEKNQISEPVKTEFGYHIIKRIA"
     gene            complement(1523..1753)
                     /locus_tag="VD694_00670"
     CDS             complement(1523..1753)
                     /locus_tag="VD694_00670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11242.1"
                     /translation="MKLVCLNFVLIFIIGVAIAVPLVIIGSVNAQNQNITPSMIINMS
                     DLSIKVGNTTSNETITFSNNTVGETGNTTSSN"
     gene            2048..>2747
                     /locus_tag="VD694_00675"
     CDS             2048..>2747
                     /locus_tag="VD694_00675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11243.1"
                     /translation="MRFSGKSHSKLYLIGIFAVIFYFSYGFDSFSGIQVGIMGNTALG
                     QIDDNKESSNENTPNTTINTAIDGDNNVIVNNGSTASNSMKFSFSGMDDEGKSINRFE
                     CSVDGKPFVTCVSTNTVNVIDGTHTFSVRSEDNAGNKDLTPASYTWTANTETSNTQID
                     SASDGNDMIVTNNSNTRSNSMTFAFSGTDNVGAKIYRFECSLDGTPFVTCVSTNTVNV
                     IDGTHTFSVRSEDNA"
BASE COUNT          994 a          391 c          528 g          834 t
ORIGIN      
        1 aaattaatac agaccaaatt acagggtagt tattttgttg aaaagacaaa ggaattggat
       61 gaattggatg atagattgca taagatctat tcctacaagg agagatacga ctcgttaagt
      121 aaaatagtaa atgcttatca aaagacaaac ctcgatagca cttatgcgga acattcaaac
      181 ttgataaaat caaagctccg taagattgag gataaaaaag ttaaggaaaa atcgttactg
      241 gagttagata atgaagtttt tgtactgtct acgaagctag ctgaaatgaa ggcaatattt
      301 cgagatagac aggaggtgga aaataatcta aagaacttgg aatccgataa acaattactt
      361 gagactgaat tgatgaaaat gaaagaaaac cttgcgatga gaaaaacaga acatgataat
      421 aatctgaggc aaattgaatc atttatcaag aaaatggacg aattgaagga aagagttgat
      481 aaaattatct tcacagatca gataggcgtc tggctaaatc aacattttat cccatcaata
      541 gaacagatcg aatctcaagt gttgatcagc gttaaggaag aattcaacaa attattccag
      601 aagtggtttt acttactgat tgaagtaggt gacatagatg tagaaattaa tgaattcttt
      661 actcctgttg taaatcaaag tggttatcat ttagaagttg atagtttaag tggtggagag
      721 aaaacttcaa tcgcacttgc atatagattg gcgcttaacg aaatcatcag gaggatgata
      781 atgcttgaag acaatttatt gattctagat gagcctaccg atggttttag taaggaacaa
      841 ctcgttcaaa taaaatatgt cttagaagag ctcagcgcag ctcaagtaat agttgtatct
      901 cacgagaaag aattggaagg atttgtagaa acaatattta gggtagtcaa ggaaagtgaa
      961 aaatcgcagg tcgaattagc agtatagagt gacaaagcct gaacatacta ttgaaatgtt
     1021 gaatggtgca ttaatacttt cgtgcactaa atttaaaaca ccatgatatc aaacgttacg
     1081 aaacttaggt aaagataatg cacttacaaa tctattcact agaaatttac tatagattga
     1141 aagtactttg gaaaacaata tatttcatag tataataaac tataatgttg gcagacaaga
     1201 ttaagtgttc ccatatactt gtaaagaaac aaagcgaagc actattaatt cttgaacggt
     1261 taaaaaaagg tgaaagcttt gataaattgg caaaggaact ctcaatagat agaggtagtg
     1321 gtaaacgagg tggtgatcta ggatattttg gaaggggagc tatggtaaag ccttttgagg
     1381 ttgcatcatt taatcttgaa aagaaccaga tttcagaacc tgtaaaaact gaattcggat
     1441 atcacataat aaaaagaatt gcataactac cgaattatat aattgcaatt ctaaacattt
     1501 tcaaacttac agggttcact ttctaatttg agctagtagt atttccagtt tctccgacag
     1561 tattgttaga aaaagtgatt gtttcattgc ttgtggtatt gccaactttt attgatagat
     1621 cgctcatatt aataatcatg cttggagtga tgttttgatt ctgtgcgttt actgaaccaa
     1681 ttataactaa tggcacagca attgcaactc ctattatgaa tattagaacg aaatttagac
     1741 aaaccaattt catggatttg ctatcgctag gggcatatat atacagttga gttgtcatgt
     1801 cattagaaga aggaaaaata atcatccgtt gcagtttttt tgaatactgc attcaacaag
     1861 aatgaacttt ttgataaagc ttggaattag gttgaaaaat cctacgtttc tttcaattta
     1921 ataataatta cagtcaggag acaataatga ttgtaataat atcgcagtat tggagtttat
     1981 tagaaatttt tagaatacta cttcatgttt accttaatat acttcacgct caagatacaa
     2041 ataggtaatg agattttctg gtaaatcaca ttcaaagtta tacttgatcg gcatttttgc
     2101 tgttattttt tatttttcat acggttttga ctcattttct ggaattcaag ttggaatcat
     2161 gggcaacaca gctcttggac aaattgacga taacaaggag agcagcaatg aaaacactcc
     2221 aaataccaca ataaatacgg caattgatgg agataacaat gtaatcgtca ataatggtag
     2281 cacggcatcc aattcaatga aattttcatt ttcaggaatg gacgatgaag gcaagtcaat
     2341 aaatcgattc gaatgtagtg ttgatggtaa acctttcgtt acttgtgtaa gtactaatac
     2401 agttaacgtt attgatggaa ctcatacatt tagtgtacga tccgaagata atgccggaaa
     2461 taaagatttg actcctgctt catatacgtg gacggctaac actgaaacat caaacactca
     2521 gatagactct gcttctgatg gtaacgacat gattgtaaca aacaatagca atacgaggtc
     2581 taattcaatg acttttgcat tttcaggtac ggacaatgtt ggagcaaaga tttatcggtt
     2641 cgaatgtagt cttgatggta ctcctttcgt tacttgtgta agtactaata cagttaacgt
     2701 tattgatgga actcatacat ttagtgtacg atccgaagat aatgccg
//
LOCUS       DASPFX010000034         3366 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_840880, whole genome shotgun sequence.
ACCESSION   DASPFX010000034 DASPFX010000000
VERSION     DASPFX010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3366
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_840880"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..711)
                     /locus_tag="VD694_00680"
     CDS             complement(<1..711)
                     /locus_tag="VD694_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HXW11244.1"
                     /translation="MALKLADFKTDVHNDWCPGCGDFGIVNALQMALAEMGIERDKAT
                     IFSGIGCSGKTSHFINTYGVHTLHGRVLTFAQGGKLANPEMTVVAVGGDGDGLGIGAG
                     HFVAAGRRNIDMTYIIFDNGVYGLTKGQASPTLKLGEKTKSLPSPNTNYNVNPIGLAV
                     ASGFTFVARGYSYDVRHLKDLIIKAVRHKGLSFLDVLQPCPTYNDINTRDWYAGVDLA
                     EESMERHARIYKLEDTHYD"
     gene            complement(701..2611)
                     /locus_tag="VD694_00685"
     CDS             complement(701..2611)
                     /locus_tag="VD694_00685"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HXW11245.1"
                     /translation="MSSVDFTWLIGGPQGSGVDSGANVFSKVCAEMGYHIFGKREFYS
                     NIKGEHSYFAVRVSDHEIRSNVNDVTLMASFDAETIFRHYDEVTSGGGIIYDSDLDKI
                     TTDEVHTLDNYFKERLHQELESKNKSFTIAGVLEIAKEKGVHLYPVSFREILTNLAEK
                     TENPKLRGLIRMFNVLAVSLSLGLIKMPLDPLLLSIDSIFSKKPQIAEINKQAANFSY
                     DYAKSNFGSFPYSLTGTEKQLDTILVQGHFGTSIGKMVSGCRFQSYYPITPASDESVY
                     LESNELLEIQNDRPGSTIVIQTEDEISAMGMMIGAALTGTRSSTSTSGPGFALMTEAI
                     GWAGINEVPIVITLYQRSGPSTGLPTRHGQDDLLFAVNAGHGDFPKIVYASGDIEESF
                     YDTGRCFNYADVYQIPVIHMMDKFLSSSVVTCKRFDPKKISIDRGLLLDKIDGEYRRF
                     AFTEDGISPRSKLGLDNGVFWNTGDESDEFGHITEDPQLRIKMMDKRMSRLDLVLKRV
                     PLEEQVVSFGIHDITIVSWGSTKGPVLDALSMLKKEGINIGFIQMKLIHPFPAEHVKS
                     LLKDVKTIIDIEANHSGQLGKILKQNVTREIDYFILKYTGRGMTSTEIYDSLKKIVEN
                     KANKREVLSHGA"
     gene            complement(2661..2801)
                     /locus_tag="VD694_00690"
     CDS             complement(2661..2801)
                     /locus_tag="VD694_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11246.1"
                     /translation="MPKSETEEFAICIECGNSIEKCVCVCPYCGERDKCECVLFDSTT
                     GG"
     gene            2855..>3366
                     /locus_tag="VD694_00695"
     CDS             2855..>3366
                     /locus_tag="VD694_00695"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HXW11247.1"
                     /translation="MEKKRVFLTRTLHNFALNELKKKYQIEIHSGEIPIPKTKLLKKI
                     QDIDGLICFPYDKIDKELIDVAKNLKVISTFSVGYDHIDTQYAIKKKIRVGYTPEVLT
                     DATADLAFSLILDILRRVSEGDRIIREGKWRQIYGAYDYVGIDLQGKTLGILGLGRIG
                     STLAKRAKAF"
BASE COUNT         1113 a          649 c          532 g         1072 t
ORIGIN      
        1 gtcataatgc gtatcttcaa gcttgtaaat tctagcgtgt ctctccatag attcttctgc
       61 taaatcaact cctgcatacc aatctcgtgt attgatatca ttgtaagttg gacatggttg
      121 caatacatca agaaatgaaa gccctttatg acgaactgcc tttatgatta aatcttttag
      181 gtgtctaaca tcatacgaat aaccacgtgc aacaaaagta aaaccactag ctactgctaa
      241 cccaattgga tttacattat agtttgtatt tggtgaagga agggattttg ttttttcacc
      301 aagctttagt gttggagatg cttgtccttt tgttaatcca taaactccgt tatcaaatat
      361 gatgtaagtc atgtcaatat ttcgtctacc agctgcaaca aaatgaccag cgccaattcc
      421 taatccatca ccatcaccac caactgcgac cactgtcatc tcaggatttg caagttttcc
      481 tccctgagca aaagtcaaaa ctcttccgtg taatgtatga acgccataag tattgataaa
      541 atgagatgtc tttccagagc aaccaattcc agaaaaaatt gttgccttat cacgctctat
      601 tcccatttct gctaatgcca tttgtaatgc attgacaatt ccaaaatcac cacatccagg
      661 acaccaatca ttatgtacat cggttttgaa atctgctagt ttaagcgcca tgacttagca
      721 cctccctttt gtttgcctta ttttcaacta tcttttttaa tgaatcataa atttcagtgc
      781 ttgtcattcc tcttccagta tattttaaaa taaaataatc aatttctcta gttacatttt
      841 gctttaagat cttacctaat tgcccagaat gatttgcctc aatgtcaatg atagttttta
      901 catcttttag aagtgacttg acatgttcag ctgggaaagg atgaattaat ttcatttgga
      961 taaatccaat attgattcct tcttttttaa gcatagaaag agcatctaag acaggacctt
     1021 tggtagaacc ccaagaaact attgtaatat catggatgcc aaatgagacg acttgttctt
     1081 ctagtggaac tcgctttaac acaaggtcca gtctagacat tcttttatcc atcattttga
     1141 ttctaagttg aggatcttct gtaatatgac caaattcatc agattcgtct ccagtattcc
     1201 aaaaaacgcc attatctaga cccaatttag aacgtggaga tatcccatct tcagtaaatg
     1261 caaatcgcct gtactcacca tctattttat ctagcaataa acccctatca atagaaattt
     1321 tctttggatc aaatcttttg catgtaacaa cagaactaga aagaaactta tccatcatgt
     1381 gaataacagg tatttgatat acgtctgcat aattgaaaca tcgacctgta tcataaaagc
     1441 tctcttcaat atctcctgat gcataaacaa tttttggaaa gtcaccatgc ccggcattaa
     1501 ctgcaaataa taaatcgtct tggccatgtc ttgtaggaag accagttgat ggtccgcttc
     1561 tttgatacaa agtaataacg atagggacct cattaattcc tgcccaacca attgcctcag
     1621 tcatcaatgc aaaccctgga cccgaagtag acgtagaaga acgtgtacca gtaagtgctg
     1681 caccaatcat catacccatt gcagatatct catcttcagt ttgaattaca attgttgaac
     1741 caggtctatc attttggatt tccaaaagtt cgtttgattc aagatataca ctttcatcgg
     1801 aagctggggt aataggatag tatgattgaa atctgcatcc actaaccatt tttccaatcg
     1861 aggttccaaa gtgaccttga acaagaattg tgtcaagttg tttttcagtt cctgttaaag
     1921 aatatggaaa agaaccaaag ttggatttag cataatcata tgaaaaattt gctgcctgtt
     1981 tgttaatctc ggctatctga ggttttttag aaaatataga gtcaatggat aaaagcagag
     2041 gatcaagtgg cattttgatt aatcctagcg ataatgaaac tgcaagtaca ttaaacatcc
     2101 taatcaatcc tctaagttta ggattctctg ttttttccgc aagatttgtc aatatttctc
     2161 taaaagatac tgggtagaga tgaacacctt tctcctttgc aatctctaga actcctgcaa
     2221 ttgtaaatga tttgtttttt gattctaatt cttggtgtag tctttctttg aaataattat
     2281 caagtgtatg tacctcatca gttgtaattt tatccaaatc agagtcatag attattccgc
     2341 caccacttgt aacctcatca taatgtctga agattgtttc agcatcaaat gacgccatca
     2401 atgtgacgtc atttacattt gaacgaattt catgatcaga gactctaact gcaaaatagc
     2461 tgtgctcgcc ttttatatta gagtaaaatt ccctcttacc aaaaatatga taacccatct
     2521 cggcacaaac tttggaaaaa acattagctc cggaatctac tccacttccc tgcggaccac
     2581 caattaacca agtaaaatca acagaactca tactgattat tctcactttt aggcattaat
     2641 aatatgatgg ataaattatg ctaaccacca gtagttgaat caaataacac acattcgcat
     2701 ttatctcgtt caccacaata aggacataca catacacatt tttcaataga attaccacat
     2761 tcaatacaaa tagcaaactc ctcagtttcg gattttggca tccaattatt tagaaagaaa
     2821 tcgtataaat ggtttgagac aaatatcata aatattggaa aaaaaacgag tttttctaac
     2881 cagaacgcta cataattttg cattaaatga attaaaaaag aaatatcaaa tagagattca
     2941 ttcaggagaa atcccaattc caaaaacaaa actattgaaa aaaattcaag atattgatgg
     3001 tttgatttgc tttccatatg ataagattga taaagaattg atagatgttg caaaaaatct
     3061 caaagttatc agtacattta gtgtaggtta tgatcatatc gatacacaat atgcaataaa
     3121 aaagaaaatt cgtgtaggat atactccaga agtccttacg gatgcaactg ctgatttggc
     3181 attttcatta atactagata ttttacgtcg agtttcagaa ggagacagaa taatcagaga
     3241 aggaaaatgg agacagattt atggagcata tgactatgtg gggattgacc ttcaaggtaa
     3301 gacacttgga attcttggat taggcagaat aggaagtact cttgcaaagc gagcaaaagc
     3361 atttga
//
LOCUS       DASPFX010000035         4612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_413233, whole genome shotgun sequence.
ACCESSION   DASPFX010000035 DASPFX010000000
VERSION     DASPFX010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4612
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413233"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VD694_00700"
     CDS             complement(<1..516)
                     /locus_tag="VD694_00700"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF013640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HXW11248.1"
                     /translation="MFPNKFRVCVSLATDSVDKLPAMITSAFQRDADFVEIRFDYAIY
                     REIDHALDMTSKIKNTAIFTLRSKEQGGFFEGTNRERISLLEKIAMTRPMLLDIEIST
                     LKKEKGIREFLSKNKIPILVSSHDFRKTSSLSTLLKKFEDMRKYSNYVKMVTTARSIE
                     DNFKLLSLYDNN"
     gene            complement(530..1291)
                     /locus_tag="VD694_00705"
     CDS             complement(530..1291)
                     /locus_tag="VD694_00705"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HXW11249.1"
                     /translation="MLNYPICEIPVLTISGHVEPHIKESNHIRDFVFGFGDGINTSLG
                     IVAGVGGANSSPDFIILAALVGMFTGAKAMAVQNYLAVKSQREILESEIEREEYEIEK
                     YPEEERKEIEEIYRGKEFDEDLVKRVTEKITSNKNVWLRTMLTEELGLNLDIVGNPIK
                     GALIMFASFIIGGILPILPYLLSKTSFVPLQYSLWIAIAISITSSFIIGAKKAKLARK
                     NWVKGGIEMSGLGTGIALLGYGIGAELNNANLLNF"
     gene            complement(1369..1530)
                     /locus_tag="VD694_00710"
     tRNA            complement(join(1369..1383,1415..1435,1493..1530))
                     /locus_tag="VD694_00710"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1494..1496),aa:Tyr,seq:gta)
     gene            1687..1989
                     /locus_tag="VD694_00715"
     CDS             1687..1989
                     /locus_tag="VD694_00715"
                     /inference="COORDINATES: protein motif:HMM:NF014032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048500 - signal recognition particle
                     [Evidence IEA];
                     GO_function: GO:0008312 - 7S RNA binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit SRP19/SEC65
                     family protein"
                     /protein_id="HXW11250.1"
                     /translation="MKDYDHQIVWLDYFNKNLSRKKGRKVSKNISVYDPTMQELIGAS
                     ETLELDFSEEDTNNQARYPRRAFVKSGYIMISKKEKKTSVVNQIAKEMFEARQQKR"
     gene            2115..2417
                     /locus_tag="VD694_00720"
     CDS             2115..2417
                     /locus_tag="VD694_00720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Gar1/Naf1 family protein"
                     /protein_id="HXW11251.1"
                     /translation="MEMIGEIIHMARSGRLIVKVEENTNHNLIGQTLIDNKGSRIGKI
                     IELIGSVKSPYASVMPTINSKYTVGGKVYKSPSLNHQFKSSKSSNKRYRTRRRKMA"
     gene            2414..3499
                     /locus_tag="VD694_00725"
     CDS             2414..3499
                     /locus_tag="VD694_00725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HXW11252.1"
                     /translation="MTSVEYCSQCPECQSKIILDYGKGEYVCHKCGCVVMEQVDYYGP
                     ETNSTDFEERNKNTRASGSTSLSLHDFGLRTEIGNSSRDYSGRAIDYQNVELMNRSRK
                     WHSRLRVSSSKERRLSNVLSKINEVCSVLSLRKTITETASMIYRNFENNSKAKGKSIT
                     CIASATIYLACKRCGVVRSIEEIVQAAGISEFDKSSVKLASRYYRSMVMEMNRIDESK
                     NKVDASLIIDESEPQVQYTDSRSGDNADSFSHGSTAPSIFAIDNYISKLANIAKIDTK
                     IERLALEIAQKTNNNFFSDGKAPNGLAAAYIYLASVLLGVNLLQIDVSNFAGVTEVTI
                     RNRCKDILNNFKLVVTAKPANQYIKND"
     gene            complement(3516..>4612)
                     /locus_tag="VD694_00730"
     CDS             complement(3516..>4612)
                     /locus_tag="VD694_00730"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HXW11253.1"
                     /translation="LFIPIRPMLAERVQTSKEALEKVSGKGAVEFKLDGERVQIHRKG
                     KKVEIFSRSLENITHYYPDVAEVSRTIKLTNFIIEAEVVAMNRYTEEFLPFQELMHRR
                     RKYDITRNVENYPVSVNVFDILWASGRDKTKLPYLKRRELLKDIITNLEDRKLTLINQ
                     KIVTSVEELEKFMAKSIEFGCEGLVVKQTNSPYRAGARGFAWTKIKREYRSELVDSLD
                     LVIVGGAHGRGRRVGKYGALLLAIFDKKESVFKSVCKVGSGFTDEVLEELFDELGKYK
                     IPNKHARVYSKLEMDTWFTPTIVIEIIASEITLSPEYDAGMNSIRKGFGLSLRFPKFT
                     KKIRRDKNPQDITDETELVQMYKKQRNIKL"
BASE COUNT         1461 a          883 c          797 g         1471 t
ORIGIN      
        1 attgttgtca tatagtgaaa gcaatttgaa attatcttca atagacctcg ctgtggtaac
       61 catcttaaca tagttgctat attttctcat atcttcaaat tttttcaaaa gtgtagaaag
      121 acttgatgtt tttctaaaat catgcgatga tacaagtatt gggattttgt ttttagatag
      181 aaattctcta ataccttttt ccttttttag agtagatatt tctatatcaa gtaacattgg
      241 cctagtcatg gcaattttct ctaatagtga aatacgttct ctattagttc cttcaaaaaa
      301 tcctccttgt tctttcgatc ttagggtaaa gattgctgta ttttttatct tactagtcat
      361 gtctagggca tggtctattt ctctgtatat ggcataatca aatctaattt ccacaaaatc
      421 tgcatctctc tgaaaagcgc ttgtaatcat tgcaggtagc ttgtcaaccg aatctgttgc
      481 aagagagaca caaactctga atttatttgg aaacaatatg atcagttttt caaaagttta
      541 gcagatttgc attattcaat tctgcaccga ttccgtatcc taatagtgct attccggttc
      601 ctaaacctga catctctatt ccgcctttta cccaattttt ccttgctaac tttgctttct
      661 tggcaccaat tatgaacgaa gaagtgatac taatcgcgat agctatccat agtgaatatt
      721 gaagtggtac aaaacttgtc ttggacagca ggtatggcaa tattggcaat attccaccta
      781 tgataaatga tgcaaacata ataagtgctc ccttgatagg gttacccaca atatccagat
      841 tcagtcccaa ttcttcagtt aacattgtcc taagccacac attcttattg gaagtgatct
      901 tttctgtgac gcgctttaca agatcttcgt caaattcctt gcctcgataa atttcctcaa
      961 tttctttccg ttcttcttcg ggatattttt ctatttcata ctcttctctt tctatctcag
     1021 actcaagaat ttctctttgt gattttacag ctaaataatt ttgaactgcc attgcttttg
     1081 cacctgtaaa cattcctact agtgcagcta atattatgaa atcaggagag ctgttagctc
     1141 ctccgacccc cgctactatt cccaatgacg tatttatccc atcgccaaat ccaaacacaa
     1201 agtctctaat atggttggat tccttgatgt gcggttcaac atgtcctgag atggtcaaca
     1261 caggtatttc gcagattggg taatttaaca ataacagaaa aatgccttca tggcttaaat
     1321 attccataaa tctcgagttg aaaacattcg tctaaggtat gaagtgtatc ccgcgggcag
     1381 gatttactcc agaagaccat gaaatcaaat ctgtttgagc ctgcgactct tcggtcgctg
     1441 caaatgttag cctgataggc tgtttcacga ggttagcaat ttctgccgac tactacagcc
     1501 gaaagctcta ccaggctgag ctaccgcggg acgtttttgg taatgaattc tggctatata
     1561 aaataattga aatttggtgt caagcctttg gagaatgaaa aaaaggataa tttctgacca
     1621 gtattgcaaa attgtctcat tacggattca aaataattaa ttatgcgaaa aaatatagta
     1681 tcgttaatga aggattacga tcatcagatc gtctggttag actactttaa caagaattta
     1741 tcgagaaaga aaggacgaaa agtgagtaaa aatatttcgg tttatgatcc tacaatgcaa
     1801 gagctaattg gtgcatcgga aactttagaa ttggattttt ctgaagaaga tactaataat
     1861 caagcgagat atccgagaag ggcctttgta aaatcagggt atatcatgat atcaaaaaaa
     1921 gagaaaaaaa catccgttgt taatcaaatt gcaaaagaga tgtttgaagc aagacaacaa
     1981 aaacgctaaa gtccaatggt tccgacatca caatactggt ctgaactgaa taatgataga
     2041 ttttatttat cttgcaacta acatttattg acagattaaa atgataatga gtgcgtgaaa
     2101 ggtgttaata cacaatggaa atgataggtg aaattatcca catggcaagg agtggtcgac
     2161 ttatcgttaa agttgaagag aatactaacc acaacttgat aggtcagaca ctaatcgata
     2221 ataagggttc tagaattggt aagattattg aattaatagg ttcagttaaa tccccatatg
     2281 cgtcggtgat gccaacaata aattcaaagt atactgtagg ggggaaagtg tacaaatcac
     2341 ccagtctcaa tcatcaattc aagtcatcaa aatcatcaaa taaaagatac agaactagga
     2401 ggagaaaaat ggcatgacat ctgtagaata ttgctcccaa tgtccagaat gccaatccaa
     2461 gataatcctt gactatggta agggtgagta tgtgtgtcac aaatgtgggt gtgtagttat
     2521 ggaacaagtc gattactatg gacccgaaac taactcaact gattttgaag aaagaaataa
     2581 aaatacaaga gcaagcggtt cgacaagttt gtcacttcat gattttggat tgagaacaga
     2641 aataggaaac agttcaagag attatagcgg cagagccata gattatcaaa acgtggaact
     2701 gatgaacagg tcacgcaaat ggcatagtag attgagggtt agttcttcaa aggaaagacg
     2761 actatcaaat gttctttcta aaattaatga agtatgttcc gtcctcagcc tcaggaaaac
     2821 tataacagaa accgcctcaa tgatttatcg aaatttcgag aataacagta aggctaaagg
     2881 aaagtccatc acttgtattg catcggccac catttatttg gcatgcaaaa gatgcggagt
     2941 tgttagatct atagaagaaa tagtccaagc cgctggtata tcggaatttg acaaatcaag
     3001 tgtgaaacta gcatccagat attacagatc gatggtaatg gagatgaaca gaatagatga
     3061 atctaaaaat aaagtagatg catctttaat tattgacgag tccgaaccac aggttcaata
     3121 tactgatagt agatcaggtg acaatgcaga ttcattttcc catggctcaa cagctccgtc
     3181 catatttgca attgataatt atatttctaa acttgcgaat attgcaaaaa tagatacaaa
     3241 aattgaaaga ttggctcttg aaattgccca gaagacaaac aataatttct tttcagatgg
     3301 taaagctccc aacggactag ctgctgcata catttatctt gcgtcagtac tccttggtgt
     3361 aaatcttctt cagatagacg tttccaattt tgcgggtgtt actgaagtga ccatcagaaa
     3421 tagatgcaag gatatattga ataatttcaa acttgttgta actgcaaagc cggcaaacca
     3481 atacattaaa aatgactgaa tagacctatt acaaattata attttatatt cctctgcttt
     3541 ttatacattt gaacaagttc agtttcatct gtaatgtctt gaggattttt atcacggcgt
     3601 atttttttgg taaattttgg aaatcgcaat gacaatccaa aacctttcct tatagaattc
     3661 atacccgcat catattcagg actcagggtt atctcagatg caataatttc aatcactatt
     3721 gttggtgtaa accaagtatc catttctagt ttcgaataaa ccctggcatg tttattcgga
     3781 atcttgtatt ttcctaattc atcaaaaagt tcttctaaga cttcatctgt aaatccactt
     3841 cccactttac atacgctttt gaaaacactc tccttcttat caaaaattgc aagtaacaag
     3901 gcaccgtact tgcctactcg ccttcccctt ccatgagcac caccaactat tactagatct
     3961 aagctatcaa ctaattcact cctatattct ctttttattt ttgtccaagc aaatcctcta
     4021 gctcccgctc gataaggact attggtttgc ttaacaacca aaccttcaca accaaattca
     4081 attgatttcg ccataaactt ttcaagctcc tccacactag ttacgatctt ctggtttatc
     4141 aaagtcagtt tgcggtcctc taaattagta ataatgtctt tcaataactc ccttcgtttc
     4201 aaatacggca gttttgtttt atctcttccc gatgcccaga ggatatcaaa aacatttact
     4261 gataccggat aattctcaac atttcgggta atgtcatatt tccggcgtct gtgcattagt
     4321 tcttgaaatg gaaggaattc ttctgtatac ctgttcatag caacgacttc cgcctcaata
     4381 atgaagtttg ttagcttgat agttctcgag acttcagcta catctggata ataatgtgtt
     4441 atgttttcca gacttcttga aaatatctca actttcttgc ccttcctgtg aatttgtacc
     4501 ctctcaccat cgagcttgaa ttctactgca cccttgcctg atactttctc aagtgcttct
     4561 ttgcttgtct ggaccctttc ggcaagcatc ggtcttatgg gtataaacaa tt
//
LOCUS       DASPFX010000036         2678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_840553, whole genome shotgun sequence.
ACCESSION   DASPFX010000036 DASPFX010000000
VERSION     DASPFX010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_840553"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VD694_00735"
     CDS             <1..233
                     /locus_tag="VD694_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11254.1"
                     /translation="HNLRSFSAIKSDVNFYLIRLSHGHSRQFRDLLLKKYGILVRDCS
                     DFKGMNDKYIRVAVRTRNENSVLFDSLESLDK"
     gene            230..1084
                     /locus_tag="VD694_00740"
     CDS             230..1084
                     /locus_tag="VD694_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HXW11255.1"
                     /translation="MKAKQLMIQGTSSGSGKSTLVVALCRIFSDLGYKASPFKAQNMT
                     SNFHVIKQKGLVKRMAGIQAVQATAARIEPDIRMNPVLLKPLGDNLSEIILGGTGNLK
                     MTAEDYYKTFVLQQGLPKVLQDLNSLRNENDLIIIEGAGSPAEINLLDYDIANMVLAE
                     RTNSKVLLVADIERGGCFAAIVGTMSLLPPRQRKFVKGIIINKFLGQKSILNNAILQV
                     EEMTKKKVIGVVPKLQFDIPSEDSLDQKRSKHSYSKRYLDEQINLVASTFMDNIDMQC
                     LLNILKLK"
     gene            1088..2056
                     /locus_tag="VD694_00745"
     CDS             1088..2056
                     /locus_tag="VD694_00745"
                     /inference="COORDINATES: protein motif:HMM:NF002281.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HXW11256.1"
                     /translation="MNSEFILLSIVGGIALCFTLNDPPNRIHPISWLGKFISHIIPKL
                     KRTNPLQEKLMGVLFTLILTIGVTMISYYFSIVLYKLFGIIALLIYSLLILKFTMAIL
                     TLETHVNAIIQAIEEKNLIKARKNLSLIVGRNTETLDRTHILSATIESIGESMVDGIC
                     SILFYFSIFGPAGAIAYRIINTLDSMIGYTDSYHYHIGWMAAKLDTLSNYIPARLCAV
                     MLVLSSKMVGGDWKNSVLIMRKDHNNTPSLNGGYPMSALAGALKVKLEKIGYYELGTS
                     IEPLTIEKCKNALTLVKVSVILFFILISMPIVLFLSILGWWSILYV"
     gene            2049..>2678
                     /gene="cobS"
                     /locus_tag="VD694_00750"
     CDS             2049..>2678
                     /gene="cobS"
                     /locus_tag="VD694_00750"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:NF014685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HXW11257.1"
                     /translation="MFSPIISVFSFLTIIPTSRASLTDLNVIARNMHYFPLCGGLIGL
                     MIGLVALFSSTFLPQYFSSFIVLVTFVIVTGVHHIDALADFADGIMKKGDRQSKRKAM
                     SDPYVGSAGTSALIINFIGLYIAVFNFESPIKLYYAIIVAEVISKYVMVMQASIGTSA
                     WSGLSSPFTVEMKKRTKIAISIIITVVLVFVIEGIMGLLTLGIVIIIGLI"
BASE COUNT          858 a          437 c          520 g          863 t
ORIGIN      
        1 atcataattt gcgttcattt tcagcgatca aatcagatgt taatttctat cttatccgat
       61 tgagtcacgg tcattctagg caatttagag atttactatt aaaaaagtat ggaattctag
      121 ttagagattg tagcgatttc aaaggtatga atgacaagta tatccgcgta gcggtaagga
      181 ctcgtaacga aaattcggtg ctctttgatt cattggagtc acttgacaaa tgaaagcaaa
      241 acaactcatg atacaaggta cttcatctgg atcaggaaaa agtaccttag tggtagcttt
      301 gtgtaggatt ttctctgatt tgggatacaa ggcatctcca tttaaagcgc aaaacatgac
      361 gtcaaatttt catgttatca agcaaaaggg attagtaaaa agaatggccg gaatacaagc
      421 cgtacaagct acggcggcca gaatagaacc cgatattagg atgaatccag ttcttttgaa
      481 acccttgggg gataacctaa gcgagattat tctaggcgga acaggaaatt tgaagatgac
      541 tgcggaggac tactacaaga catttgttct ccaacaagga ttaccaaagg tgttgcaaga
      601 tttgaatagc cttagaaatg aaaacgattt gatcataatt gaaggtgcag gatctccggc
      661 ggaaattaat ttgttagatt atgatatagc aaacatggtt ctcgcagaaa gaacaaattc
      721 aaaagtattg ttggtggcag acatagaacg gggaggttgt tttgcagcga tagttggaac
      781 aatgagtttg ttgcctcctc gtcaacggaa atttgtaaaa ggtataataa tcaacaagtt
      841 tttgggacaa aaatcgattc taaataatgc aatactacag gtagaagaaa tgacgaaaaa
      901 aaaggtgatc ggggtagttc caaaactaca atttgatatt ccaagtgaag attccctgga
      961 tcaaaaaaga tcaaagcatt cgtatagcaa acgatatctt gatgaacaga ttaatttagt
     1021 agcatctaca ttcatggata acattgacat gcaatgtcta ttgaatattc taaaattgaa
     1081 gtgaatcatg aattccgaat ttattttgtt gtcaattgtt ggaggcattg cattatgttt
     1141 tacacttaac gatcctccaa ataggatcca tcctatttca tggcttggta aatttatatc
     1201 tcacattatt ccaaaactaa agcgtacaaa tccccttcaa gaaaagttaa tgggagtttt
     1261 atttacgctg attttaacta taggcgttac tatgatatct tactattttt caattgtcct
     1321 ctataaatta tttggaataa ttgcgctact gatatattca ctactgattc ttaaatttac
     1381 gatggcgatt ctcacattag aaacacatgt gaatgcgatt attcaagcaa tagaggaaaa
     1441 aaacctgata aaagcaagga agaacctttc tcttatcgtt ggaaggaata ctgaaacgct
     1501 tgatagaact catatcttat ctgcaacaat tgaatctata ggtgaaagca tggtagatgg
     1561 aatttgttca atattgtttt acttctctat atttggtcct gcaggtgcta ttgcttacag
     1621 gatcataaat acacttgatt ccatgattgg atacacagac agctatcatt atcatatcgg
     1681 ttggatggct gcaaagctag atactttatc aaactacatc ccggctcgat tatgcgcagt
     1741 tatgttggtt ctttcttcaa agatggttgg tggagactgg aagaattcag tattgattat
     1801 gcgtaaggat cacaataata cccctagtct caatggggga tatccaatgt cggcattagc
     1861 gggggccctc aaagtgaaac tagaaaaaat aggatattat gaattaggaa ccagtattga
     1921 acctctcact atcgagaaat gcaaaaatgc actcaccttg gtaaaagtat ctgtaatctt
     1981 gttctttatt ttaatctcta tgccaatagt acttttctta tctattctag gatggtggag
     2041 tatcctgtat gtttagtcca attatttctg tattttcatt tctaacaata attccaacat
     2101 caagggcatc ccttactgat ctaaatgtta ttgcaagaaa tatgcattac tttccactct
     2161 gtggtggact tattggccta atgataggat tggttgcgtt attctcctct acttttcttc
     2221 cccaatattt ctcaagtttt atagtattgg taacgtttgt tattgttact ggtgtccatc
     2281 atattgatgc actagctgat tttgctgatg gaattatgaa aaagggtgat agacaatcca
     2341 aacgaaaagc gatgtctgat ccatatgtgg gttctgctgg aacttctgca ctgattatca
     2401 attttatagg tctttacatc gcagtattta actttgaatc gccgatcaag ttgtattatg
     2461 caataattgt tgcagaggta atatccaaat atgttatggt aatgcaagca tctattggaa
     2521 cctctgcctg gtcgggtcta agctcaccat tcactgttga gatgaaaaaa cgaaccaaaa
     2581 ttgccatatc tattattata actgtcgtgt tggtatttgt tatagaagga ataatgggtt
     2641 tactaacctt aggtattgta ataatcatag gtcttatt
//
LOCUS       DASPFX010000037         3791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1410153, whole genome shotgun sequence.
ACCESSION   DASPFX010000037 DASPFX010000000
VERSION     DASPFX010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1410153"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..246
                     /locus_tag="VD694_00755"
     CDS             58..246
                     /locus_tag="VD694_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11258.1"
                     /translation="MSTERNKNPLKRDQALNDATSGQLGEQPRPKPLGKEEPSESKTD
                     DNIRDSHIRTARKMSRDM"
     gene            complement(655..1185)
                     /locus_tag="VD694_00760"
     CDS             complement(655..1185)
                     /locus_tag="VD694_00760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11259.1"
                     /translation="MSESEETKWRLGTEPEEAVERAAELSAEEDEKKEELQQTIQTNA
                     EEIGRGGEGSLIARPQEIPITKAPKKKQRIAKAEHPTVKKEPDSSKSMVKISKQLEGQ
                     AAHLARIEKIVLPLQKSVNRINKQVSTIKQLYTVVTQLQMQIRSTKNRKQNQGAQKRK
                     RRKNPVSQSKKRSLKG"
     gene            1430..2602
                     /locus_tag="VD694_00765"
     CDS             1430..2602
                     /locus_tag="VD694_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HXW11260.1"
                     /translation="MNVFSPIGIRGLAIISIALIVIVSFGLFFYIQGITEQSIRDNLF
                     EQQRKRQMDSTQIISNHISSDLELVIAMMDGLANSLYLQQGQFYDNEAKELIGKKYDD
                     FNKVINRLFVLDENDIVAASFAPRGLENLAGKDLSLREWVRETRNSLHPVFSAGYENQ
                     GIYRVFITYPVIQKGTEQYLGMIGLSVPTIPFFAQYNKNLEAQNSNVNNQFLVAFDRR
                     GIILANDVDQKLVGQDFFGENVQMFINHNTELNRLTKSLLSGDAGYAVYDYGRGERLT
                     TQQPVFVNDKSELFIQMVSPTTQLYSEIQEAISLEQVKMFSLLVGTIAAITVFVIFLV
                     KWNSTLENEAKKKAQQLYESERKARELENSYDAVKQYLDEVLDELHRKPVHSQGGY"
     gene            2677..3573
                     /locus_tag="VD694_00770"
     CDS             2677..3573
                     /locus_tag="VD694_00770"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HXW11261.1"
                     /translation="MTYKIRYSIIDAPSILGLRPTGVESLPEALKAAGLLEELNAEYA
                     GRLQPSLQYSTERDQKTLLLNAEPIRSFSLQLDAAVRKVLDDNMFPVVLGGDCSILLG
                     TLLSLRRLGRYGLFFIDGHADFYQPHASTTGEVADMDLAIVSGRGPDILTDIDNLKPL
                     VLDEDVVVFGYRDAEQSASYESQNVKETNMHVFDLSKVRELKVSPAASLAVTRLLKDE
                     LAGFWIHLDADVLDDKIMPAVDYRLDGGFSFTELSELLRILIASKRAVGITITIFNPS
                     LDQDGSIAKNFVSSIASGLQNT"
BASE COUNT         1126 a          698 c          770 g         1197 t
ORIGIN      
        1 agagatttcg tctgctcctc ttgctgtcct tattagcaat gtagtctaat acaagatatg
       61 agcactgaga ggaacaagaa cccgctaaaa agggaccagg ccttaaatga tgcaacgagc
      121 ggacagctgg gcgagcaacc aagacctaaa ccgttaggaa aagaagaacc ctcggaatca
      181 aagacggatg ataatatcag agactcacat atcagaactg cgcgcaaaat gtctcgagat
      241 atgtgagcct ctccactttt tgtagagatt ggcgaaagca acttttattt attgatcagc
      301 attttcatta tgtgattgca ttattatgta acccctagct tagatcgcta aaatttaagt
      361 agcgcatagt ataaaatgaa tttagcattt gctcgttgat catctcaaca atattcaaat
      421 gttcaccaac ctatgtctgt gtaaagacat tatggttttg cactaccagt actaattgca
      481 acactagcaa tccaagtcag cccaataata ttagagcagt atcccctgtt ctaggatatt
      541 atagacttaa tcaaactgca tgagtaaatg gtggtgatta ggtaaattga gataaaagag
      601 acaaagatga ggatattgag taacgatgtt ttttctgata ttgttatcgt tatgtcatcc
      661 ttttagactt ctcttctttg attgactaac aggattcttc cttcttttcc tcttttgagc
      721 tccttgattt tgttttcggt tcttcgttga acgtatttgc atttgtaatt gtgtaacgac
      781 agtataaagc tgttttatcg tgcttacttg tttatttatt ctattaactg acttttgtaa
      841 tggcaaaact attttctcta tcctagccag atgagctgcc tgtccttcta gctgctttga
      901 tattttcacc atgctcttac tggaatctgg ctctttcttc acagtaggat gttcggcttt
      961 tgctatccgt tgctttttct ttggggcttt agtaatcggt atctcttgcg gtcttgcaat
     1021 gaggcttcct tctcctcctc tacctatttc ttctgcattt gtttggattg tctgttgcaa
     1081 ctcctctttc ttttcatctt cttcagcaga tagttcagct gctctttcta cagcttcttc
     1141 aggctcggta cctaacctcc actttgtttc ttcactttct gacatcgata ttaataatag
     1201 gattattcaa gttaaattat ttgctatgtg ttgttgcaaa tttccatgca tggaacggat
     1261 tatgacatcg tatttttata gattgatgca tttagatcat gattgataaa taggcacttc
     1321 gcaaaccgca gcctcactct tggagcatta tctgcagttt ttattggcgg gtaccattat
     1381 agctgaataa atatatggct atggcagtaa atcatcgtag atgcgtatct tgaacgtatt
     1441 ttctcctatt ggaattagag gattagctat tatatctata gcattaattg ttattgtatc
     1501 atttggtcta ttcttctaca ttcagggtat tactgagcaa agcataaggg acaacttatt
     1561 tgagcaacag agaaagcgtc aaatggactc aacacaaatt atctcaaatc atatcagttc
     1621 agatttagag cttgttattg ctatgatgga tggcctggca aattctttgt atttgcagca
     1681 aggacaattt tacgataatg aagcaaaaga gctaattgga aaaaagtacg atgattttaa
     1741 taaagtaatc aacagactct tcgtattaga tgaaaatgat attgttgcag ctagcttcgc
     1801 tcccagaggt ttggagaact tggctggcaa ggatttgtca ttgagggaat gggttaggga
     1861 aacgcggaat tctctccatc cagtattcag tgcaggttat gaaaatcagg gaatctacag
     1921 agtatttatt acttatcctg taatacaaaa aggaaccgag caataccttg gaatgattgg
     1981 actctctgtt cccacaattc cgttcttcgc ccaatataat aaaaatttag aggcgcaaaa
     2041 cagtaatgtt aataatcaat ttttggtagc gtttgatcga agaggtataa ttctagccaa
     2101 tgatgtagac caaaaattgg ttgggcaaga tttctttgga gaaaacgtac agatgttcat
     2161 aaatcataac acagaactga atcgcttaac caaaagtctg ctttcagggg atgcaggata
     2221 tgctgtttac gactatggca gaggggagag actgacaact cagcagcctg tttttgttaa
     2281 cgataaatcg gagcttttta ttcaaatggt gtcacctacc acgcagcttt attcagagat
     2341 acaggaagcc atttcattag aacaagtaaa gatgttttca ttgctagtag gtactatagc
     2401 agccattaca gtatttgtaa tatttttggt taagtggaat agcaccctag aaaatgaggc
     2461 gaagaagaag gcgcaacagc tatatgaatc agaacggaag gcgagagaat tggaaaattc
     2521 atatgatgca gtgaaacagt atttagacga agttttggat gaacttcata gaaaaccagt
     2581 tcattcccag gggggctatt agttgactat gccagccaat ttcagactac ggatctaaag
     2641 ctgaatgtat aatacaagtg caataatcgc aatatcttga catataaaat acgatattca
     2701 ataatagacg cgccctcaat cttgggatta cgacccacag gggtagaatc actaccagaa
     2761 gcattaaagg cagcaggttt actagaggaa ctaaacgcag aatacgctgg tcgtcttcaa
     2821 ccatcactac agtatagtac tgaacgtgat caaaaaacat tgctattaaa tgccgagccg
     2881 atcagatcgt tttcgctaca actagatgcc gctgtcagaa aggttcttga cgataatatg
     2941 ttcccggtag tacttggtgg tgattgcagc attctcttag gcacgctctt gtccttgcga
     3001 cgtttgggca ggtatggatt attctttata gacggtcatg ctgattttta tcaaccgcac
     3061 gcatctacta caggagaagt tgcagatatg gacttagcca ttgtatctgg tagaggtcca
     3121 gatattctta ctgacataga caatctcaaa cctcttgttc tagacgagga tgtcgtagta
     3181 tttggctatc gtgatgcaga acaatctgcc agctatgaga gtcaaaatgt caaagagacc
     3241 aatatgcatg tctttgatct ttcaaaagta agagagttaa aagtaagccc ggctgcctcg
     3301 ctggctgtca ctaggctgct aaaggatgaa ctagctggat tctggattca tcttgatgcc
     3361 gatgtcttag atgacaagat tatgcctgcc gtagactatc gcctagatgg tggatttagc
     3421 ttcactgagc taagtgagct tttaaggata ttaattgcgt ccaaacgagc agtcggaata
     3481 actattacaa ttttcaatcc gagtctggat caagatggtt ctattgcaaa gaatttcgtt
     3541 tcaagtattg catccggtct gcaaaataca taaccatatt aatggcagct agcatttcaa
     3601 gaggactaga gttttgtgag gataaacaaa tatggttaat taagaaaaat taagaagata
     3661 ataagtgtaa tagaggagtc cagtctgaga taatggaaga ggctgcatgc ttcaagatct
     3721 ccctcgtatg cttttgtctt tctcctttga gccagactta tcacatacgt ctatcctcta
     3781 ttacgtgata c
//
LOCUS       DASPFX010000038         4288 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_125291, whole genome shotgun sequence.
ACCESSION   DASPFX010000038 DASPFX010000000
VERSION     DASPFX010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125291"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VD694_00775"
     CDS             <1..204
                     /locus_tag="VD694_00775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11262.1"
                     /translation="GHEAREHQRGLERRSALGKDGIDAARDRLGALGVGVAHFGAGWR
                     AMATTAHPDGDAVELAQFGLADV"
     gene            complement(296..856)
                     /locus_tag="VD694_00780"
     CDS             complement(296..856)
                     /locus_tag="VD694_00780"
                     /inference="COORDINATES: protein motif:HMM:NF013798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macro domain-containing protein"
                     /protein_id="HXW11263.1"
                     /translation="MLVSEISIGKRKLRLVRGDITERIVDAIVNAANSDLYHGGGLAA
                     AIVAKGGQIIQEESDKIGYVQTGNAVMTSSGILPCKAVIHVVGPRNGEGKENEKLTQA
                     INSVLKLAQQNNFKSISIPAISTGIFGFPKDKCAKILVEESINFTQRQGPHNSLPEII
                     EFCVIDDETFQYFKKQFNYVKDGQEK"
     gene            924..1436
                     /locus_tag="VD694_00785"
     CDS             924..1436
                     /locus_tag="VD694_00785"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HXW11264.1"
                     /translation="MDAFDCIKTKLDIREFSLEQVSHEIKIKVLEAARLTGTGLNTQH
                     WRFILIEDKGDLEKLAKDSTSGKWVTGCNFAIVILTNPKYHFHLIDAGRAIQNMQLAA
                     WNSKVGSGIFTGIDKDNFRKDFDIPDELNISAVIGFGYPARNLTGNRKDRIPLDSLVY
                     FEKYGISNKS"
     gene            complement(1471..1554)
                     /locus_tag="VD694_00790"
     tRNA            complement(1471..1554)
                     /locus_tag="VD694_00790"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1518..1520),aa:Ser,seq:gct)
     gene            1741..2184
                     /locus_tag="VD694_00795"
     CDS             1741..2184
                     /locus_tag="VD694_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11265.1"
                     /translation="MNLRESNEIFRRAIIKTYFEVELLKIDYHKSNVRHPLIKDEGFT
                     VEDKLHLYFDIITGNDYPDGDEWFGVEYLFPHNIKLPDNLIGPDYFTTIYVADAKHFW
                     RHKELVRFKYGKTKKLIESLEFINKKYRELSKSLYDTSVVDQVTK"
     gene            complement(2215..3189)
                     /locus_tag="VD694_00800"
     CDS             complement(2215..3189)
                     /locus_tag="VD694_00800"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HXW11266.1"
                     /translation="MFPLHDDNQRLHGRPYVTYLLIAINAIVFLVEVIAYSDSTSRNA
                     LFQTYGAIPYKILGGDIFSAISSMFLHGGIAHLIGNMLFLFVFGDNIEDKFGRIKYVL
                     IYIGWGLAATLAHSFFAMSTGAGNIPAIGASGAISGVLGAYLVLFPRAKIFTVIAAFF
                     ITTVRIPAMAYIPFWFIMQVIFSLIGQNSGVAYVAHIGGFLAGLLTGYVLKNAISGYG
                     IPTAQIRYQKKDRQNVANMPDMTVHTQPEVIKGSNFYEIIAEMPGLANQSEIQASYDP
                     NNQSVRVYTTGSRKYDINIRISDTQDDILKIDQIRYLNGIVRIRISKQ"
     gene            complement(3213..3377)
                     /locus_tag="VD694_00805"
     CDS             complement(3213..3377)
                     /locus_tag="VD694_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11267.1"
                     /translation="MKWFNRDKSDDEPKSLSCKYCDMKFEDKERLKRHTRKAHSEKGG
                     DMPKFNPFGT"
     gene            3548..3955
                     /locus_tag="VD694_00810"
     CDS             3548..3955
                     /locus_tag="VD694_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HXW11268.1"
                     /translation="MSEVEEVIQYKWGVAHIFSSYNNTLVHITDISGAETIAFSSGGR
                     HVTADRYESSPYAAMKSAVAAADIAKTKGINALHIRVRAVGGVGPRIPGPGAQAAIRA
                     LARAGFRIGRIDDVTPIPHDTTRKPGGRRGRRV"
     gene            complement(3999..>4288)
                     /locus_tag="VD694_00815"
     CDS             complement(3999..>4288)
                     /locus_tag="VD694_00815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11269.1"
                     /translation="VDFVIDKIPIPQDLTHFASSNCVKIDDLIFFGGEEYETIATVPK
                     QHFKKLMKDARKYRIKVYHIGKVVRGNGNLVYEINGIRKIIRNKGFLHFAK"
BASE COUNT         1275 a          807 c          825 g         1381 t
ORIGIN      
        1 ggccacgaag ctcgagaaca ccagcgaggg ctcgagcggc gatccgcgct cggcaaggac
       61 ggcatcgatg cggcgcgaga ccggctcggc gcattgggcg tcggcgtcgc gcacttcggc
      121 gcgggctggc gcgccatggc cacgactgcg cacccggatg gcgatgccgt cgagcttgcc
      181 cagttcggcc tcgcagatgt gtagcttgac tcaagcctac atcagtaaat gatctaaaat
      241 tgaattacca tggtgaagtg aattattggt tatatcataa cgtaaaaatg tattattatt
      301 tttcttgtcc atccttgaca taattgaact gtttcttaaa atactgaaat gtttcatcat
      361 caataacaca gaattctatg atttcaggta gtgaattatg gggaccttgc ctttgagtaa
      421 agttgattga ttcttcaacc aatatttttg cgcatttatc tttaggaaat ccaaatattc
      481 cagtgcttat ggctggaata gatatactct tgaaattgtt ttgttgagca agttttagaa
      541 cactgtttat tgcctgtgtt agtttttcgt tctcttttcc ctctccgttt cttggtccca
      601 ctacatgaat taccgcctta caaggcaata ttcctgaact tgtcattaca gcgttaccag
      661 tttgtacgta tcctatcttg tcactttctt cttggattat ttgtccgccc tttgccacga
      721 tagctgcagc cagccctcct ccatgatata ggtctgagtt tgcggcattc actattgcgt
      781 ctacaattct ttctgtaata tctcctcgaa ccaacctgag ttttcttttt ccgattgata
      841 tctcactgac taacaatact ccattgcctc aaacaaatag tttcgacaag agggctttaa
      901 tacattaagg caattgtgta cgtatggatg catttgattg tataaagacc aaactagaca
      961 taagagagtt cagtctagaa caagtttccc atgaaataaa aataaaagtg cttgaagctg
     1021 caagactaac aggcactggt ctaaacactc aacattggcg ctttatacta attgaagata
     1081 aaggtgactt ggagaaactt gcaaaggata gcactagtgg aaaatgggtt actggatgta
     1141 attttgcaat cgtaattcta acaaatccaa aatatcattt tcatttgatt gatgccggaa
     1201 gagcaattca gaacatgcag ttagcagcat ggaattctaa ggtcggttca ggaattttca
     1261 caggaattga taaggataat ttcaggaaag actttgatat tccagatgaa ttgaatatct
     1321 cggcagtaat tggatttggc taccccgcaa gaaatttaac aggcaataga aaggatcgga
     1381 tacctctgga ttcgcttgtt tatttcgaaa agtatggcat ttcaaataag tcatagcatc
     1441 caattacgaa aaatattaaa atattataag cgcggggagt gggattcgaa cccacgagtt
     1501 cttgcgaaca tgggattagc aatcccacgc cctaccaggc taggcgaccc ccgctttggt
     1561 gatgattaag attttttgct attatattaa ttatgtagat gggttctgtt cgattaaggg
     1621 acaaatttac caccaatatt caacacccat ttacaacacc ataagattca atagatccaa
     1681 atttttcatt cttctgctaa aaagattata aaatagtcat cgtgtgttat tatattatct
     1741 ttgaatctgc gggaatccaa tgaaattttc aggcgtgcaa taataaaaac atattttgag
     1801 gtagaattgt taaagataga ttaccataaa tctaatgtta gacatcctct cataaaagat
     1861 gagggattca ccgtggaaga taaactacat ctatattttg atattataac tggtaatgat
     1921 tatcccgatg gagatgaatg gtttggtgtt gaatatcttt ttcctcataa tatcaaatta
     1981 ccagataatt taattggacc tgactatttt acaactattt atgttgcaga tgcaaagcat
     2041 ttttggcgac ataaagaact ggttcggttt aaatacggaa aaacaaagaa gctaatagaa
     2101 tctttggagt ttatcaataa gaaatatagg gaattaagta aaagcctgta tgacacatca
     2161 gttgttgatc aagttacgaa ataatttata gaaattatta atgaatcata aggattattg
     2221 ctttgatatt cgaatcctta ctattccgtt aagatatctg atttgatcaa tttttagaat
     2281 atcatcctgt gtatcagata ttcttatgtt tatatcatat tttcttgaac cagtggtgta
     2341 tactcttaca ctctgattat tcggatcata gctggcttgt atctctgatt gatttgctag
     2401 tcctggcatt tcggcaatga tttcatagaa attagatcct ttgatgacct caggttgtgt
     2461 atgaacagtc atatcaggca tattagcgac gttttgacga tccttttttt gatatcggat
     2521 ttgtgctgta ggtatgccat aacctgatat tgcgtttttt aatacatatc cggttaacaa
     2581 tcctgcaaga aaaccaccaa tgtgagcaac atacgccact ccactatttt ggccaatcaa
     2641 actaaaaatg acctgcatta tgaaccagaa agggatgtaa gccattgctg ggattcttac
     2701 tgttgtaatg aaaaatgcag ctattaccgt aaagattttc gctcgcggga acagtaccaa
     2761 atatgcaccc aaaactcctg aaattgctcc tgacgcacca attgcaggaa tatttcccgc
     2821 tccggtggac attgcaaaga aactatgtgc cagtgttgca gctaggcccc atccaatgta
     2881 tatgagaaca tattttatgc gaccaaattt gtcttcaata ttatctccaa acacaaagag
     2941 aaatagcatg ttgcctataa gatgcgctat tccaccatga agaaacatag atgagatagc
     3001 tgaaaatatg tctcctccaa gtattttgta tgggatagca ccataggttt gaaacagtgc
     3061 gtttcttgat gtgctatcag agtaagcaat cacttctact agaaaaacta ttgcatttat
     3121 ggctattagc aaataagtta catacggtct gccatgtaat ctctgattgt catcatgaag
     3181 tggaaacatg ttttatcctt tcaatattga tttcaggtac caaaaggatt gaactttggc
     3241 atgtcgccgc ctttttcgct gtgggctttc ctggtgtgtc ttttcaaacg ttctttgtct
     3301 tcaaatttca tgtcacaata tttgcaagat agggatttgg gttcgtcgtc agatttgtca
     3361 cgattgaacc atttcataaa taatctacat gattagccgc ttcattaaag ttgtgctaaa
     3421 atgaaacttg atatcgtagc cggttgactt tattttctag aatttatcgt ctcatagtca
     3481 cgcggtctaa ccccagagag caggataggt ttttaacccc ctttaaaaaa tttagattta
     3541 ctatttaatg tcagaagttg aggaagtaat ccagtacaaa tggggtgtag cccacatatt
     3601 tagcagttat aataatactc ttgttcatat tacagacatt agtggtgcag aaacaattgc
     3661 ttttagttct ggtggaaggc atgtaactgc tgatagatat gaatcctctc catatgcagc
     3721 aatgaaatct gccgttgctg cagctgatat tgcaaagacc aaaggtatca atgcactcca
     3781 tatcagagta agagcagtcg gcggtgttgg accacgtatt cctggacctg gtgctcaggc
     3841 tgctataaga gctcttgcta gagctggttt taggataggc agaattgatg atgttactcc
     3901 aataccacat gacacaacta ggaagcccgg cggacgtaga ggacgaaggg tataatcaat
     3961 tatttcgtct ttcgatgttt acttctcctt atgaattatt attttgcaaa gtgcaggaat
     4021 cccttatttc taatgatctt tcgaattcca ttaatttcgt agactagatt tccattaccc
     4081 cttactacct ttccgatatg atacactttg attctgtatt ttctggcatc tttcattaat
     4141 ttcttaaaat gttgttttgg gactgttgcg attgtttcgt attcttctcc accaaaaaaa
     4201 atcagatcat cgattttgac gcaatttgaa ctagcaaaat gagtcaagtc ctgtggtatt
     4261 ggaatcttat ctataacaaa atcgactt
//
LOCUS       DASPFX010000039         3388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1265331, whole genome shotgun sequence.
ACCESSION   DASPFX010000039 DASPFX010000000
VERSION     DASPFX010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1265331"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1615
                     /locus_tag="VD694_00820"
     CDS             <1..1615
                     /locus_tag="VD694_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HXW11270.1"
                     /translation="VQVMRSHSVSAEGGTAAVLFSDEGDNIESHIYDTIRGSDFLCDQ
                     DVAEKLAQEIPNEIYQMDRWGMPWSRRDDGRIDQRKFGGYSFPRATYAQDKVGFYEMQ
                     TLYDTCLKYDNIHFYNEWYCTSLLDDGNNNFSGVTAIEMKSGNFNVFDSSSGIIATGG
                     AGRLYSFSTYAYSSTPDGLDMGYRAGLALKDMEFVQFHPTGILPSGILITEGARGEGG
                     YLINNQGERFMKTYAPEKLELAPRDVVSRSMIREIDNGKGFVHETGVSCLKLDLTHLG
                     EERIKEKLAGIREIGIKFSGVDIISEPIEIRPVCHYMMGGIHTNIDGQTEINGLWSAG
                     EAACNSLHGANRLGANSTSECLVWGAITGRLAAQFAEKKKEKGTAATNADNKIQTEEK
                     RIFDGIFRGKGEVNPYDIRKEFTDMMDVKAYIFRDEKNLVEGLKKVRELRKQTWKHVD
                     DSAKEYNTNFINVMEIDSLLRVGEIIIAGALNRKESRGAHSRTDYPNRDDVNFLRHTL
                     AYFKDSDGEPQFSWHPVTLTRYVPAERKY"
     gene            1615..2061
                     /locus_tag="VD694_00825"
     CDS             1615..2061
                     /locus_tag="VD694_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HXW11271.1"
                     /translation="MKEIERPTRNNLEGIGGWLNPSRYGWERISYWFQRLTGVFLLVY
                     FIGHVYETSTIVNGQNAWESFLALTQTVWGHLFLIMVIGASTFHSANGIRLIFTHAGI
                     GLGTPGRPDYPYIPASLNYRQKSGIWIALILAAAAMFYGFNVLFGV"
     gene            2074..2430
                     /locus_tag="VD694_00830"
     CDS             2074..2430
                     /locus_tag="VD694_00830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HXW11272.1"
                     /translation="MANRTILKESQIMKIHYITGIAAIFVVALHIIMRLVVPFEQSLE
                     YDYIIANYKNIVYVLILESILVLISVHGFNGLRIILLELRQNRAWENMVTVVTISGMI
                     GLIAYGTRTIILANGL"
     gene            2439..3263
                     /locus_tag="VD694_00835"
     CDS             2439..3263
                     /locus_tag="VD694_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HXW11273.1"
                     /translation="MSNTVDNKNEQKIKLKVYRENRGQESGSHYDTFEVPYKKWTTVL
                     DALLYVKSYMDPSVAIRYSCRMASCGSCGMKINGMPKLACYTKISELETSTIECEPLS
                     NFPIIRDLVTDFSRFFDHHKSMQPYVQTNESTEDDTSKGTFSFYQSPEDVDKYLQFSY
                     CIKCGLCYSACPTVGTDLNFPGPQALSQQYRYFADTRDESKKRLDIVDDRHGIWRCHF
                     AGSCSKVCPKGVDPALGIQLLRSYMLGISKNDKVPAKKIEINDNNDNNYNKSTDTE"
BASE COUNT         1113 a          568 c          765 g          942 t
ORIGIN      
        1 ggtacaggta atgcgctcac attcagtatc tgcggagggt ggaacagcag ccgtactatt
       61 ttctgacgag ggagataaca ttgaatccca tatttatgat accataaggg gtagtgattt
      121 cctgtgcgat caggacgttg ctgaaaaact tgctcaggaa ataccaaatg aaatttatca
      181 aatggacagg tggggaatgc cctggtctag gagagatgat ggtagaattg atcagagaaa
      241 atttggaggt tattcattcc caagggccac ttatgcacaa gataaggtgg gattttatga
      301 aatgcaaaca ctgtacgata catgtctaaa atatgataac atccattttt acaatgaatg
      361 gtattgcaca tcgctacttg atgatggtaa caataacttt tcaggtgtta ctgcaataga
      421 gatgaaaagt gggaatttta atgtctttga ttccagttct ggaattatcg ccactggtgg
      481 tgctggtcga ctttatagct tttcaactta cgcctactct tctactccgg atggtcttga
      541 tatgggatat agagctggtc ttgccttaaa agacatggaa tttgttcaat ttcaccctac
      601 tgggattctt ccgtctggca ttctcataac tgagggagct agaggcgagg gcggatattt
      661 gataaacaat caaggtgaga gattcatgaa aacctatgcg ccagaaaaat tagagctagc
      721 cccccgcgat gtagtttcca gatcaatgat aagggaaatt gacaatggta agggatttgt
      781 tcatgaaaca ggggtatcat gtctcaagtt agatctcact cacttgggtg aagagcgaat
      841 aaaagaaaaa ctagccggaa tcagagagat tggtatcaaa ttttcaggtg tcgatataat
      901 aagtgaacct atagaaatta ggcccgtttg ccattacatg atgggcggaa ttcacaccaa
      961 cattgatggt cagacagaga tcaatggttt atggtctgca ggtgaagctg cctgcaacag
     1021 tttgcatgga gcaaatagac ttggagcaaa ctcaacatca gaatgcttgg tttggggagc
     1081 cataacgggc agacttgccg cacagttcgc agaaaaaaag aaagaaaagg gaactgccgc
     1141 aaccaatgcc gataacaaga ttcagacaga agaaaagagg atatttgatg gtattttccg
     1201 tggcaaaggc gaggtaaacc catacgatat tagaaaagag tttacagata tgatggacgt
     1261 taaagcatac atattcagag acgaaaagaa ccttgttgaa ggtctgaaaa aggtaaggga
     1321 gcttcgcaag cagacatgga agcatgttga tgatagcgct aaggaatata acacaaattt
     1381 cattaatgta atggagatag attcattatt gagagtagga gaaataataa ttgctggagc
     1441 attgaacaga aaagaatcac gcggtgccca ttcaagaaca gattatccta atagagatga
     1501 tgttaatttc ttaagacata cactagcata ttttaaggac agtgatggtg aaccgcaatt
     1561 ttcatggcat cctgtaacat taacacgata tgtcccagca gagagaaaat actaatgaaa
     1621 gagatagaac ggcccactcg taataatttg gaaggaatag gtggatggct gaatccttcg
     1681 cgatatggat gggagcgaat ttcctactgg ttccaaagac ttactggggt atttctccta
     1741 gtctacttta ttggacatgt gtatgaaaca agtactatag ttaatggcca aaacgcctgg
     1801 gaatcattcc tggcattgac tcaaacagtg tggggacatt tgtttctaat tatggtaata
     1861 ggtgctagta catttcactc tgcaaatggt attcgactca tctttaccca cgcaggtatc
     1921 ggactgggga caccggggag acctgactat ccatacattc cggcatcact aaattacaga
     1981 cagaaatctg gaatatggat agctttaatt ctggctgcag ctgcaatgtt ctatggtttt
     2041 aacgtcttgt tcggagtgta gcgaatcaac aaaatggcaa accgcacaat actaaaagaa
     2101 agtcaaataa tgaaaattca ttacatcaca ggaattgctg caatatttgt tgtagcgctg
     2161 catataatta tgagactcgt agttccattt gagcaaagtc ttgagtatga ttacattata
     2221 gccaattaca agaacatagt ttatgttcta attttagagt caattcttgt tttgatctcc
     2281 gtacatggat ttaacggatt aagaataata ttgctggagc taagacagaa tagagcctgg
     2341 gaaaacatgg ttactgttgt gacaatttca ggaatgatag gactcatagc atacggcact
     2401 agaacaataa tattggctaa tggtttgtga ttatagaaat gagtaacacg gttgataaca
     2461 agaatgaaca aaagataaaa ctaaaagtgt atagagaaaa tagggggcag gagtctggat
     2521 cccattatga tacttttgaa gttccataca aaaaatggac aactgtgctt gatgccttgc
     2581 tttatgtaaa aagttacatg gatcctagtg ttgccattag atattcttgc aggatggcgt
     2641 cttgtggttc gtgcggaatg aaaataaatg gtatgcccaa gttagcgtgc tatacaaaaa
     2701 tctctgaatt ggaaacatct actattgaat gcgaaccctt gtcaaatttt ccaataataa
     2761 gagatcttgt tactgatttt tcccgattct ttgaccatca caaaagcatg cagccgtatg
     2821 ttcagactaa tgaaagtact gaggatgata ctagcaaagg aactttttca ttttaccaat
     2881 ctcctgaaga tgtggacaaa tatctacagt tttcgtactg cataaagtgc ggattatgtt
     2941 attcagcatg ccctactgtt ggaactgatc tgaattttcc aggaccgcag gctttgtcgc
     3001 aacagtacag atattttgcc gacacgaggg atgaatcgaa gaaaagattg gatattgttg
     3061 atgacagaca tggaatttgg cgatgtcact ttgccggttc gtgtagtaaa gtatgtccta
     3121 agggagtaga ccctgcgttg ggaatacaac tattgagatc ctacatgctt ggcatatcaa
     3181 agaacgataa ggttccggcg aaaaaaattg aaataaacga taacaacgat aacaattaca
     3241 acaagagcac agatacagaa taagacagtt gttctaatag cagagctagc gatcaaaaat
     3301 cagaaaagtt ttgaaaccca ctatttttaa gacaaatttt gggagtcaac tattttgaag
     3361 gtaatttgct ctcgttgact tgtttgtt
//
LOCUS       DASPFX010000040         4270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_696452, whole genome shotgun sequence.
ACCESSION   DASPFX010000040 DASPFX010000000
VERSION     DASPFX010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4270
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_696452"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..927)
                     /locus_tag="VD694_00840"
     CDS             complement(67..927)
                     /locus_tag="VD694_00840"
                     /inference="COORDINATES: protein motif:HMM:TIGR00571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HXW11274.1"
                     /translation="MKQQYDQILVTPKPFVKWAGGKRQLIPILHQNLPESFGTYYEPF
                     LGGGALLFHILTDKSGQKCSISDLNSDLVLAYTTIRDRIDVLISSLKSHEKNYQKDSK
                     SYYYSVRESNPRNEVEKTSRLIFLNRTCFNGLYRVNSKGKFNVPLGKYTNPNIVNEEN
                     LRAVSSILQTNRILIKCRDFESVLRDAKKGDLVYFDPPYQPVSSTANFTSYTTKDFTY
                     DDLTRLAELCLKLDSKECHVLLSNSDSKEVSDIFAKKPWKITRIEANRSINSNSKKRT
                     GHFELLIKNY"
     gene            complement(1069..1719)
                     /locus_tag="VD694_00845"
     CDS             complement(1069..1719)
                     /locus_tag="VD694_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia monooxygenase"
                     /protein_id="HXW11275.1"
                     /translation="MVWLRRCTHYLFIVVVAVNSTLLTINAGDYIFYTDWAWTSFTVF
                     SISQTLMLCVGATYYLTFTGVPGTATYYALIMTVYTWIAKGAWFALGYPYDFIVTPVW
                     LPSAMLLDLAYWATKKNKHSLILFGGVLVGMSLPLFNMVNLITVADPLETAFKYPRPT
                     LPPYMTPIEPQVGKFYNSPVALGAGAGAVLSVTFTALGCKLNTWTYRWMAAWSKWD"
     gene            complement(1821..2183)
                     /locus_tag="VD694_00850"
     CDS             complement(1821..2183)
                     /locus_tag="VD694_00850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11276.1"
                     /translation="MTLPKGFGSSGAGGASSSDVEKMIGRRVENMTGMITISYIAAWL
                     ATFGGTAAGYFYYPWAYPTSSGHYAFIVLTIIEAIGYLFCVKVMEEGSKKNSNGIIAA
                     TLAATAVGTVLIVLLVGH"
     gene            complement(2301..2864)
                     /locus_tag="VD694_00855"
     CDS             complement(2301..2864)
                     /locus_tag="VD694_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit C"
                     /protein_id="HXW11277.1"
                     /translation="MAQMPALIPKEVEIQRLKKIWLIVIAMGSTAASVEVDNFVDGSL
                     HQTSIRDSAFTPAHWWLYSHFITLPLGWAAAAIYDRKVPVLRGPNNSINTGLKMTILG
                     YLATMFTIGVNEMWHFWFVEEIFAVPNHWMFNMGVVVAFMGALAYVVRVYARLVELGA
                     ETPGENPYVAEMYKMALEGKLYSRAIP"
     gene            3118..3687
                     /locus_tag="VD694_00860"
     CDS             3118..3687
                     /locus_tag="VD694_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit B"
                     /protein_id="HXW11278.1"
                     /translation="MVEKKIFVLGLAAVLALGTLGFNWVESIIPTADAHGVQAQLQSR
                     VIRIEDETFNRQSLQTGETLTVQGTLVSLVERDLRGWISIFSESTNAGNRWEMLARDP
                     PGNVFDIPGNAIVEYSLSAKALEAGVYHVHTQLNVAKVGPGLGPGQTVVVEGEPIIKP
                     IPYTNIAYQSIIIGVGYVITFATRPWQVI"
     gene            3783..4097
                     /locus_tag="VD694_00865"
     CDS             3783..4097
                     /locus_tag="VD694_00865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11279.1"
                     /translation="MLSFKIKKLDIFQSYFFGDVEFRNDNYKINIQNQKRGKVLKLPF
                     GINSKKEKMIVRMTGSKDLFVEDYLPYYGQSEWLEIDSDEITYFLADHQDQFDTIEIM
                     DT"
BASE COUNT         1388 a          771 c          767 g         1344 t
ORIGIN      
        1 gctcagcctg gtagagcgtt accttggtaa ggtaaaggtc gcgggttcag atcccgttcg
       61 gagctttcaa taatttttta ttaaaagttc aaaatgacca gttctttttt tagagtttga
      121 attaatggat cgatttgctt ctatcctagt gattttccat ggtttctttg caaagatatc
      181 agatacttcc ttagagtcag aatttgacaa caatacatga cattctttag aatctaattt
      241 caaacaaagt tcagctagtc tagtaagatc atcatatgtg aaatcttttg tagtgtaact
      301 cgtaaaattt gcagtagagc ttactggttg atacggagga tcaaaatata ccaaatctcc
      361 tttttttgca tcccttagaa cggattcaaa atccctacat ttgattaaga ttctatttgt
      421 ctgtaagata ctgcttacag cacgaagatt ttcttcgttt actatatttg ggtttgtgta
      481 ttttcctaat ggaacattaa attttccttt gctatttaca cgatatagcc cattaaagca
      541 agttcgattc aagaaaatta gtcgagatgt tttttcaact tcgtttctag gattgctttc
      601 tcttacagaa taatagtatg atttggaatc tttttgataa tttttttcgt gactttttag
      661 agatgaaatc aagacatcaa ttctatctcg gattgtagta tatgccaata caagatcaga
      721 gtttagatca gagatactgc atttttgacc acttttatca gtaagaatat gaaaaagtaa
      781 agcgcctcct ccaagaaacg gctcataata cgtaccaaaa gactctggaa gattttgatg
      841 taatattgga attaactgtc tttttcctcc agcccatttt acaaatggct ttggagtaac
      901 aagaatctga tcatattgtt gcttcacata ttatcatcac aataacgcat attgtcaaaa
      961 gagacaacaa aagatcacaa catgtacaat attttttaat caaattctag aatcgatata
     1021 gaatactcta aactaaaata ataaaatgaa aaggaaaggg ttgaagtttt agtcccactt
     1081 tgaccaagcg gccatccatc tgtatgtcca agtgtttaat ttacaaccta atgctgtaaa
     1141 cgtaactgac aatactgcac cagcacctgc acccagtgct actggactgt tatagaattt
     1201 acctacttga ggctctattg gtgtcatgta tggtggcaat gttggtcttg gatatttgaa
     1261 tgccgtttct agtgggtctg ctactgttat caggtttacc atattgaata atggtaaaga
     1321 cattcctaca agtacaccgc caaacagtat caacgaatgt ttgttcttct ttgtagccca
     1381 atatgccaaa tcaagcaaca ttgctgatgg caaccaaact ggtgttacaa tgaagtcata
     1441 tggataacct agagcaaacc atgcaccttt tgctatccat gtgtatactg tcataattag
     1501 ggcgtaatac gtcgctgttc ctggaacgcc tgtaaacgtt aggtaatatg ttgcacctac
     1561 gcaaagcatc aaagtttgcg atattgaaaa taccgtaaac gatgtccaag cccagtcagt
     1621 atagaaaatg tagtctcctg cattaattgt taacagtgta gagttaactg caactactac
     1681 tatgaacaag tagtgagtac atcgtcttag ccagaccatt atcaagtaga ataaacggtc
     1741 agtatataaa attttagagt gtggtggaga tcgttaattt tttaaaataa agtaaaaaga
     1801 agaactgaag gattttcctt ctaatgtcca acaagtagta ctataagtac agtacccaca
     1861 gcggttgcgg ctagagtcgc agcaattatt ccattgctgt tcttcttaga gccttcttcc
     1921 ataactttaa cacagaagag ataacctatt gcttcgataa ttgttagaac gatgaacgca
     1981 tagtgaccac tgcttgttgg atatgcccat ggataataga agtatcctgc tgcagtacca
     2041 ccaaaagttg ctaaccaagc tgcgatgtaa gatatagtga tcatacctgt catattttcg
     2101 acacgtcgac caatcatttt ttctacatcg gaactagatg cgccacctgc gccacttgaa
     2161 ccaaatcctt tcggaagagt cattctggaa ttatactaat cagaatcctt ttaaatcttt
     2221 cttaaatgtg aggtccagta cgatcttcgc gatattgaaa ataagaaaaa gagaaaaaaa
     2281 tgtgctattg cactatgtgt ctatggaatt gctctgctgt acaatttgcc ttctaaagcc
     2341 atcttgtaca tctctgcaac gtacggattc tcacctggag tttctgcacc taattctacg
     2401 agtcgagcat atactctaac tacgtatgct agtgcaccca tgaatgctac tacgacaccc
     2461 atgttaaaca tccagtgatt tggtactgca aagatttctt ctacaaacca gaagtgccac
     2521 atctcattga ctccaattgt aaacatggtt gcaaggtaac caagaatggt catcttcaat
     2581 ccagtgttaa ttgagttatt tggacctctg agtactggta cttttctatc atagattgct
     2641 gctgctgccc atccaagtgg taatgtgata aagtgggagt atagccacca gtgtgctggt
     2701 gtaaatgcac tatctctgat agaggtttga tgtaaagaac catcaacgaa gttatctact
     2761 tcgactgatg ctgcagtgga tcccatagca atgacgatga gccagatttt ctttagtctc
     2821 tgaatctcaa cttcttttgg gattaatgcg ggcatctgtg ccatgttgac tttagagtta
     2881 attctggata taaagcaagg gttttgaaat tacaatattt tatcagaatt gtgataaatt
     2941 aaataataaa ctattagaat ttttcatata aaaattgaga tattttgaaa taattatact
     3001 taatttttat taattttaat gctgatcatc gatgttaatc atcactatga agtatcgatc
     3061 ctcgttacca aggtaaaata tataacaatg tgtattatca ttctgaatat taggactatg
     3121 gtcgaaaaaa agattttcgt attaggactc gctgctgtac ttgcattagg tacacttggt
     3181 ttcaactggg ttgaatccat aattccaact gcagatgcac acggtgtcca agcacaactt
     3241 cagagtcgtg tcatcagaat cgaagatgag accttcaata gacaatcact acaaactgga
     3301 gaaactttga ctgttcaagg tactttagtt agtcttgtag aaagagacct tagaggatgg
     3361 atttccattt tctcagaatc tactaacgca ggtaacagat gggagatgtt agcaagagac
     3421 ccaccaggaa acgtctttga cattccaggt aacgctattg ttgaatattc attatctgca
     3481 aaagcacttg aagctggtgt atatcatgta cacacacaac ttaacgtagc taaagtaggt
     3541 ccaggtctag gtccaggtca aacagtagtt gttgaaggag aaccaattat caaaccaatt
     3601 ccatatacca acatcgcata tcaatcaatc atcattggtg ttggctatgt aatcacgttt
     3661 gcaacacgac cctggcaagt tatctaagcc acccactttt ccttttcatt ttatagatac
     3721 tcattacgat tatagtatca taatcaacca agttttatct gtaagaaaaa aatagaaaga
     3781 aagtgctaag ttttaaaata aaaaaattag atatatttca aagttatttt tttggagatg
     3841 ttgagtttcg taatgataat tacaaaataa acatacaaaa tcagaaaaga ggaaaagtgc
     3901 tcaaattacc ctttggaatt aattcaaaaa aagaaaagat gatagtaaga atgacaggat
     3961 caaaagacct gtttgttgaa gattatttac cgtattatgg ccaatcagaa tggcttgaaa
     4021 tagattcgga cgaaattaca tattttcttg cagatcacca agaccaattt gacactattg
     4081 agataatgga cacttaacag aaggacttta aataatcctc aaaaaaatca catatatgat
     4141 ttggccagga accggggatc catataagag aaaaaagaca ttacaatttt tggctctaag
     4201 tgccggagta ggagctgttg ccgtattaat tacaattcta gttgtgaatc cattcattgg
     4261 agaacagccc
//
LOCUS       DASPFX010000041         2548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1407982, whole genome shotgun sequence.
ACCESSION   DASPFX010000041 DASPFX010000000
VERSION     DASPFX010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1407982"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VD694_00870"
     CDS             <1..635
                     /locus_tag="VD694_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW11280.1"
                     /translation="ISVRGPELLSKWVGESERGIREIFRRARQAAPCVVFFDEIDSIA
                     PVRGMGGDSMVTERVVSQLLTELDGIQSLSGVVVLAATNRADIIDTALLRPGRFDKIL
                     LVPLPDKSARQKILEIHSKDKPLGTDVDLTRIAEMTDGFSGADTSSVINTAVSLVLHE
                     YLAKYPTPEEAARHASEAHVMMRHIEEGVKKIKAQREGKPGEKVSVQYYR"
     gene            complement(690..1349)
                     /locus_tag="VD694_00875"
     CDS             complement(690..1349)
                     /locus_tag="VD694_00875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11281.1"
                     /translation="MYSQAFSVPHAVRQVIGSNTLFFQALSTGIANYTALAQKIKPEV
                     QKLTKSEVNVNTLVVAIKRFADSLEENSYEVHPIFDGVRMTLTGSIIDIDFHESDDTY
                     QVLDEIFELGGGYNMFRTDKQIRLFAEDIDEIRSMFKSSPKGVAGEIKDGLSKITITV
                     QSDRKDTYEVLSIVLSILHNNRIPLYNAFFTQNEIVLILDMDDAAKAYEVVREKLYSH
                     D"
     gene            1525..1818
                     /locus_tag="VD694_00880"
     CDS             1525..1818
                     /locus_tag="VD694_00880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11282.1"
                     /translation="MLALTKREFIIDNGTEKIPELGHLHKNVAVKYLMKRRRSLLMTK
                     NLEKVENLFSQLPRKIRIIGKQVTHSYEVNWERQGVTEFEGSRFVFTLKSADN"
     gene            2151..2363
                     /locus_tag="VD694_00885"
     CDS             2151..2363
                     /locus_tag="VD694_00885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11283.1"
                     /translation="MKYPLRNIVLEKIKEVGNLSDNELLNNLEKDGVQITVEDLNKTL
                     LDLEIFGLVRVSWLTKDKRRIELVTS"
BASE COUNT          858 a          420 c          477 g          793 t
ORIGIN      
        1 ttatcagcgt tagaggaccg gaattgctta gcaagtgggt aggggaatct gaaagaggta
       61 ttagggaaat ctttagaaga gcaagacagg cagctccttg tgtcgtattc tttgatgaaa
      121 ttgattcaat agccccggtt agaggtatgg gtggagacag tatggttaca gaaagagtag
      181 tctcacaatt acttacagaa ttggatggca tccaatcgct ttcaggtgta gtagtattgg
      241 ctgcaaccaa tagagcagat attattgata cggcattgtt aagaccagga agatttgata
      301 aaatcttgtt agttccgtta cctgataaat ctgcaaggca aaaaatattg gaaatacaca
      361 gcaaggacaa accacttggt acggatgttg acctgacgag aatagctgaa atgacagatg
      421 gattcagtgg cgctgatacc agttctgtta tcaatactgc cgtatccttg gtattgcatg
      481 aatatcttgc aaagtatcct acacccgagg aagcagcaag acatgcatca gaagctcacg
      541 taatgatgag acatattgaa gagggcgtaa agaagattaa ggcccaacga gaaggcaaac
      601 ctggagaaaa agtttctgtt caatactaca gatagtacca gttactattt ttcttttgtt
      661 tagaataata ataatagcga aagacaatac tagtcatgac tgtatagttt ctctctgacg
      721 acttcatacg ccttggccgc atcatccata tccaaaatca aaactatttc attttgcgtg
      781 aagaatgcat tgtacaaagg aatacgattg ttgtgcaata tggagagaac aattgataaa
      841 acttcatacg tatctttcct gtctgactga acggtaattg taatcttaga cagtccatcc
      901 tttatttcgc ccgcaacacc ttttggagac gacttaaaca tgctccgaat ttcatctatg
      961 tcttcagcaa agagccgaat ttgtttatct gtcctgaaca tattgtatcc cccgcctaat
     1021 tcaaatattt catccaagac ttgataggta tcatcacttt cgtgaaaatc aatatctatg
     1081 atacttcctg ttagtgtcat cctgactcca tcgaaaattg gatgaacttc ataactattt
     1141 tcttcaagtg aatctgcaaa tctttttatc gctactacaa gtgtgttaac attcacttca
     1201 gattttgtca gcttctgtac ctcgggtttg attttttgtg ccaaagctgt atagtttgct
     1261 atacctgtgc tgagagcttg aaaaaatagc gtgttagaac caattacttg tctcactgca
     1321 tgtggcacag aaaaggcctg agaatacata tattttatat acggtataaa agtaataaac
     1381 ctttcttaga tatcaaaaaa tccactatat gtactaaaaa ttacaaaatg ttatttttag
     1441 tgctttcgat taaagatgtc ttcaatttaa cccaacttgt tctaatagag ttgacaatga
     1501 ctttttttaa gcaaattgaa tgtaatgctc gcattgacaa aacgtgaatt cattatagat
     1561 aatggaactg aaaaaattcc ggaattagga cacctccaca agaatgttgc agttaaatat
     1621 ctgatgaaga ggcgtagatc gcttttgatg acaaaaaatc tagaaaaagt agagaattta
     1681 ttttctcaac tgcctaggaa aattaggatc atagggaaac aagttactca tagttacgaa
     1741 gtgaactggg agcgacaagg cgtaacagaa tttgaagggt caagatttgt atttactcta
     1801 aagtcagcgg acaattaatt taaaatgtaa atggtttgct tctatgatta tcttttcaat
     1861 attgttcctc atatctctac ttagacccat gaagttagaa ttcgccaaca aattatatcc
     1921 tactttcgtt aaagaaaaat atcttaacgc cttttgacat ttgttgaaag aatatgcgac
     1981 tcactttacc ttacattcat gataaattct tgaatataac ataatcttac ttgccagtat
     2041 cataagattt caaaacaaga tggctgagga aaagcaagtt agaagggtat ttataatatg
     2101 taattggatc aaataattaa attcacatat tctgaatttg gtcaagaaat ttgaaatatc
     2161 cgctgagaaa tattgtatta gaaaaaatca aggaagtcgg taatttgtcg gacaatgaac
     2221 tcttgaacaa tttggaaaaa gacggggtac aaataacggt tgaagatttg aacaaaacgt
     2281 tacttgattt agaaattttt ggattggtaa gagtaagttg gttgacaaag gacaaaagaa
     2341 gaatagaact agttacgtcg tagattttat tattgatgta agcgatcttt ctagttgaaa
     2401 ttgaattcca ccttgtatga ttctcatatt catcttaccg atattgagta tgacagtttt
     2461 ttaccatcaa ttcttgcaac tttaaaaggt atgcgaataa aggcctgttc agtcacagta
     2521 gatacttcta ctacatcaaa ggcattaa
//
LOCUS       DASPFX010000042         4020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2054550, whole genome shotgun sequence.
ACCESSION   DASPFX010000042 DASPFX010000000
VERSION     DASPFX010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2054550"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..447
                     /locus_tag="VD694_00890"
     CDS             139..447
                     /locus_tag="VD694_00890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11284.1"
                     /translation="MSKFTITNRMDQDEIDRRTKSLLDLFRKNFLDSKSDDFVSDALS
                     NMMVCNTIYAKIFEGYLVLAEKRKIPQEMTDGFVKWASDQLDELKIKLTEKYQKTDMR
                     "
     gene            640..1755
                     /locus_tag="VD694_00895"
     CDS             640..1755
                     /locus_tag="VD694_00895"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HXW11285.1"
                     /translation="MASILILSGVIFHIEKLQIFAQTEDEKNSTLVSISKIFKDVQGS
                     VVQITRENQPTSNDTPGDENVTSLGSGFVFDKQGRIITNHHVVRDSKSVDVTFIDGNR
                     YVASVIGSDPFNDIAVIDITQNITEQLNPLRLGNSSAVEVGDQVIAIGNPYGLAGSMT
                     VGIVSQKGRLISTEGSAFSIPSVIQTDALINPGNSGGPLINVNEEVIGMNTAGVLSDS
                     GSFSGIGLAVPSNTISKIVPVLISKGNYTHPWLGISASTLTSKLTENFENLSRDFKGV
                     YVDSIIKDGPADKAGLQGSTTDQYGDKHGNDIITSVDSHNVTYMEDLVSYIDENKQPG
                     EKLNVTVLRNQTYTDLSIQLGDRNNNTKADEEKDPYS"
     gene            complement(1828..2826)
                     /locus_tag="VD694_00900"
     CDS             complement(1828..2826)
                     /locus_tag="VD694_00900"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11286.1"
                     /translation="MLIWLGELTFASWLLSYGAEHLASRFGARFVGRTLLSVATTLPE
                     IAIVVYAASDGSYGIALGAGLGSNVLMMTLGLAIMLLIATTRLSKKPIKKIEVGSFKL
                     DKIFLILTAIISAILFIDGFNFIDGIVFTVLFLVYVFVAFYEMRLEKKKDREKIIEEY
                     SNPSENVNLPSNQKQLVKSGIIFMIGTIGIFLGAEPFIESLEHVSVEIGVSAIILSVV
                     ISPIAGEMPEKISLMLLARKGAQGTSIAIANVLGSKILNNTLLLAFAVFGAMYHSGFS
                     AVIDRTEILSHQMILATGVTLIAVGLLFKKEIGIRTGFILLVMYIVSIGLQFFMNS"
     gene            complement(3000..3386)
                     /gene="hsp14"
                     /locus_tag="VD694_00905"
     CDS             complement(3000..3386)
                     /gene="hsp14"
                     /locus_tag="VD694_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp14"
                     /protein_id="HXW11287.1"
                     /translation="MGVSRYVAKEIMKEIGNRSREFYEFVLPPVDIYEDGTELVIIVD
                     LPGFLKKDIHVNISKDILTLRATRVVEMESHTIHFSQRPSRIEKKIPLPYSIPEDDNA
                     KSKADYTNGVLKIRIPISNMTNVPIT"
     gene            3836..>4020
                     /locus_tag="VD694_00910"
     CDS             3836..>4020
                     /locus_tag="VD694_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11288.1"
                     /translation="MHFAVEQAMNYSVPTIDRMAGIELYATCFRGIGGSIKAKNEDFK
                     VVELLSESISKDISKLP"
BASE COUNT         1318 a          742 c          712 g         1248 t
ORIGIN      
        1 ctgcgatatt gttgattata ttaaagagct ttcgtcaatg gcagtagtct tatttttcta
       61 cattcctaga ttcgttacac atgaaattga atgcatcaat attttaataa tggaatgtca
      121 agataactgt gtcagaacat gagcaaattc acgataacaa atagaatgga tcaagatgag
      181 atagacagac gtactaaaag tcttttagat ttatttagaa aaaactttct cgatagcaag
      241 agcgatgatt ttgtttctga tgctttatca aacatgatgg tatgtaatac catttacgcg
      301 aaaatttttg aggggtattt ggtactggct gaaaagagaa aaataccgca ggaaatgact
      361 gatggttttg tcaagtgggc ctctgatcaa ttggacgaac tcaaaatcaa gttaactgaa
      421 aaataccaaa agaccgatat gcgatgagtc ccaatataat acctaattct cgaatttaag
      481 ccaaaggtaa ttgtttataa agattaatcc tgagattacc tttcttattt tttgacctca
      541 agtactacac caacaccttt ttggaaatcc tgaatagaaa agtctatatg attactctaa
      601 tggatttttt atatgaaaag acctgtgctt atacttattt tggcaagtat cttgatactc
      661 tcaggtgtaa tctttcatat cgaaaaactg caaattttcg ctcaaacaga agatgaaaaa
      721 aattcgaccc tcgtctcaat cagcaaaatc tttaaagatg tacaaggatc agtggtacaa
      781 ataactcgtg aaaatcagcc tacatctaat gatactcctg gcgatgaaaa tgttaccagt
      841 ttagggtcag gatttgtatt tgataaacaa gggcgaatta ttactaatca tcatgtagta
      901 cgagattcaa agagtgtgga tgttactttc attgatggta atagatacgt agcgtcagtt
      961 attggaagtg atcctttcaa tgatatagct gtaattgata ttacacaaaa cataacagag
     1021 caacttaacc cattgagact tggaaattca tctgcagttg aggtaggcga tcaagttatt
     1081 gctattggaa acccgtatgg acttgcagga tcaatgacgg ttggtatagt aagtcagaaa
     1141 ggacgcttaa tttctactga agggtcagca ttcagtattc ccagtgttat ccaaacagat
     1201 gccttaatta atccaggcaa ctctggcgga cctctcatca atgtcaatga agaagttatt
     1261 ggaatgaata ccgcgggcgt actttcagat tcaggcagct tttctggtat aggtttggca
     1321 gtcccttcaa ataccatttc taaaatagta ccagttctca taagcaaagg aaattacacg
     1381 catccatggc ttggaatttc tgccagcact ctaacatcaa aactgacaga aaattttgaa
     1441 aatttgagta gggatttcaa gggggtatac gttgattcaa taatcaagga cgggcctgct
     1501 gataaggccg gtcttcaggg cagcactaca gatcaatacg gtgataaaca tggtaatgac
     1561 atcatcacct cggttgatag tcataatgtt acttatatgg aagacctagt atcttatata
     1621 gatgaaaata agcaaccagg tgaaaaattg aacgttactg tccttagaaa tcagacctac
     1681 acggatctta gcatacagtt aggagatcgc aataataata ccaaagccga tgaggaaaaa
     1741 gacccgtata gttagtcata tcaaaccgct atcaaaccat agatgtcact taagcttggg
     1801 acaatctgta agttttcttt aggctgttta tgaattcatg aagaattgaa gtccaatact
     1861 aacaatatac attaccaaaa gtatgaatcc tgttcttatt ccaatttctt ttttgaataa
     1921 taaacctact gctatcagcg tgactccagt ggccaatatc atttggtgag acaaaatctc
     1981 agttcgatct attactgcac tgaatccgct atgatacatt gctccaaata ccgcaaatgc
     2041 aagcaacaat gtgttgttta agatctttga accaagtacg ttggcaattg caatcgaagt
     2101 gccctgggct ccctttctgg ctagtagcat taatgatatt ttttccggca tttcgccagc
     2161 aattggactt attactaccg agaggattat ggctgaaact ccaatctcga ctgaaacatg
     2221 ttccaatgac tcaataaatg gctctgctcc taagaagata ccaattgttc ctatcatgaa
     2281 gattattcct gattttacta actgtttttg attacttgga agattaacat tttcagaggg
     2341 attgctgtac tcttcgataa ttttctctct gtctttcttt ttttctaatc tcatttcata
     2401 aaatgcgaca aatacatata ctaagaacag aacagtaaac actatcccgt caataaagtt
     2461 aaatccatcg ataaatagga ttgcacttat tatcgccgta agtatgagaa aaatcttgtc
     2521 gagtttaaat gacccgactt ctattttttt gatcggtttt tttgaaagac gtgtagttgc
     2581 gattaacagc attattgcca aacccaaagt catcatgagt acattgcttc ccaaacctgc
     2641 tccgagagcg attccataag aaccgtctga cgctgcatat acaactatgg cgatttcagg
     2701 tagcgtggtt gcaacgctaa gcagagttct acctacgaac ctagcaccaa atctactagc
     2761 tagatgttca gcgccatacg agagtaacca gctagcaaat gttaattctc ccaaccatat
     2821 taacatgatt agaatattat tggcttccaa acaagatgtg actacttaat ttacagaata
     2881 taaatcataa taaatttgaa tctagtacta tctagacaat actgtaaaca tccgatgaaa
     2941 ggctaatttt tttgaattaa tgttaaaatg aatttttact ccggactatt caatttttat
     3001 caagttatag gtacgtttgt catgttggat ataggtatcc taatttttag aacgccattt
     3061 gtataatctg ccttactttt tgcattgtca tcttcgggaa tagaatacgg aagtggaatc
     3121 ttcttctcaa tcctacttgg gcgctgacta aaatgaattg tgtgtgattc catttcaaca
     3181 actctcgttg ccctcaatgt aagaatatcc ttggaaatat tcacatgaat atccttcttt
     3241 agaaatccag ggaggtccac tatgatcact agttccgtac catcttcata aatgtcaacg
     3301 ggaggtaaaa caaactcgta aaattctcta gaacgatttc cgatttcctt cattatttcc
     3361 tttgcgacat accgacttac acccatatca tatctgtggg attctttcta taaattcttt
     3421 attttctgga tgggatgaaa aaccagtttg aactaaccag ttcagattat accatggttt
     3481 tactatagtc ttcaaaaata cgaaaatact gagccaatta atctgctatc ataattgcat
     3541 ggtatccaga actacactcc gggcaacagg catggtcgca taaacattct acacagtatc
     3601 tatgggcatc ataaaaagta catatgctat cagaatggag acagttctcg caaatcacga
     3661 actttctaca tggattcgaa tctaatctat ccacaatctc acttccgcca aatcatatat
     3721 taagctttat agttaaactt cagaattcta attttgacat ctatagaacc ataatagctt
     3781 tggctgcgca aaggaagtag acagattttc cggtatttga taaaaaataa aaacaatgca
     3841 ctttgcagtt gaacaggcaa tgaattactc tgttccgaca attgatagaa tggcgggcat
     3901 tgaattgtac gccacatgtt ttagaggaat agggggatca ataaaggcaa aaaacgaaga
     3961 ttttaaggtt gttgaattgc tttctgaatc gatttcaaag gacatttcta aacttcctga
//
LOCUS       DASPFX010000043         2357 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1340182, whole genome shotgun sequence.
ACCESSION   DASPFX010000043 DASPFX010000000
VERSION     DASPFX010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1340182"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VD694_00915"
     CDS             <1..227
                     /locus_tag="VD694_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11289.1"
                     /translation="PFYQDDEPTKEQLMKSAISARRVQVPGCFMIFWAIGFLILLKLE
                     YSNAVLAYSVVAFGAPILWLIFRKFSQIKF"
     gene            771..2201
                     /locus_tag="VD694_00920"
     CDS             771..2201
                     /locus_tag="VD694_00920"
                     /inference="COORDINATES: protein motif:HMM:NF014135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsB/NhaD family transporter"
                     /protein_id="HXW11290.1"
                     /translation="MNKLSQVSRKNVIGSLIIALFSVLIFILPPLLGKEIQLILSFST
                     LVMLSIYVVLSFEIIHRTAIAILGAAILVSLVIAFQLVVPHESLDFIIGLIDFNTIGL
                     LFGMMIIVAILGETGIFNWVAIKATELSKGNPWRLMVILCTFTAIVSAFVDNVTVILL
                     MVPVTLTIFRFLKRSPFPYVIGQTMCSNIGGAATLIGDPPNIIIGSAANIDFNSFVVG
                     MGPTIAITFAISLFILRLFFSKELKENFDVKVIKKFRDEEEHLIRDKNLLKKCLIILT
                     IVIFFFTIQGIIGIEVSLIAFAGAAVLLVISKVSVEKVLHEVDWSTLLFFTGLFIVIG
                     IFSEYGGIKILSTTVIGITGGDPWSTFISIVWLSAIASGFVDNIPFTVTMTPLLESLT
                     KNTQIITGFGHLPINPLWWALALGADLGGNLTLIGSSAGVVAAGISAKYGFRITFNQW
                     FKIGLPFTISTVFIGMVILAIFTLLS"
BASE COUNT          716 a          415 c          431 g          795 t
ORIGIN      
        1 aaccattcta tcaggatgat gaacccacga aagagcaact aatgaaatct gctatcagcg
       61 cacgacgtgt acaagttcct ggatgtttta tgattttttg ggccattgga tttctgatcc
      121 tacttaaatt ggaatattct aatgctgttt tagcatattc cgttgtggcg ttcggtgctc
      181 caatactatg gttgatcttc agaaaatttt cccaaatcaa attctagtcg gcgcatcata
      241 gatgtgacct atcattagca tcatcacaga gcaatagtcg acagacaacg acttcaataa
      301 aggcttttct ctttttgaaa aatttagact taatgtactg ttgataagag caacagtgta
      361 gtgacgagaa ctcatcatga gagagatagg ttcaactaac atagtcaaac tgaatattta
      421 ttttctcaaa aaatagatat ttgtgttata tctactaagt attggatatg gtcaggaaaa
      481 ctgaaggaga aattgaaatc tcgtgtaaaa actgttacca tccgatatca tttcactcac
      541 cagaatgcgt gaagtctgaa gataatgaca aaaccatttg cgggtgcaag aagccacaat
      601 actacaatgt aatattatcc aaaaatattg gttggattga aatccattgc aattcatgtg
      661 gaaagttgct ttgtttcata gatagtacga ttgatgacat ctatgatttc actacattat
      721 gttctaaatg cattgttaaa gcaacataaa ccaaataaaa tattaacatc atgaataaac
      781 ttagccaagt gtctaggaaa aatgtaatag gttccttaat aatcgcctta ttttctgttc
      841 tgatttttat cttgccccca cttttaggta aggaaataca acttattctt tcattttcta
      901 ctcttgtaat gctttccatc tacgtagtcc tttcatttga gataatccac agaaccgcca
      961 tcgcaatttt aggagcggca attcttgtta gtttggttat agcattccaa ttagtagtgc
     1021 cgcatgaaag tcttgatttt ataattggct taattgattt caatacgata ggcctgttat
     1081 ttggaatgat gataatagtc gcgatcctag gcgaaacagg aatattcaat tgggtagcaa
     1141 taaaggccac agagctaagc aaagggaatc cgtggcgact catggtaata ctatgtacat
     1201 tcactgccat tgtttctgca tttgttgata atgttacagt gatactgtta atggttcctg
     1261 ttactttgac gattttcaga tttcttaaaa gatcgccatt cccatatgta atcggccaaa
     1321 caatgtgttc caatataggt ggtgctgcaa ctttaattgg tgatcccccg aacatcataa
     1381 ttggatcagc cgcaaacatt gattttaatt catttgtagt gggaatgggc ccaacgattg
     1441 ctattacatt tgccatctcg ttgttcatac tacgattgtt cttttcaaaa gaactaaaag
     1501 aaaattttga cgttaaagtt atcaagaaat ttagggacga ggaagaacat ctgattagag
     1561 ataaaaatct gttaaaaaaa tgccttataa tactcacaat agtaatcttt ttctttacca
     1621 tacaaggaat tattggaatc gaagtttccc ttatagcctt tgcaggtgca gcggtacttc
     1681 tagtaatatc caaagtaagt gttgagaagg tgttacatga agtagactgg tctacattac
     1741 tgtttttcac aggtctcttt atagtgatcg gtatattctc tgagtacggt ggaatcaaaa
     1801 tactgtctac taccgtgatt ggaatcacgg gaggagatcc atggtcaacc ttcatttcca
     1861 ttgtttggtt atctgcaata gctagcggtt ttgtagataa tattcccttc acagtaacaa
     1921 tgactccgct tctagaatct ctaacgaaaa atactcagat aattaccgga tttggtcatc
     1981 taccaataaa tccattatgg tgggcacttg ccctaggtgc agatttgggt gggaatctca
     2041 cattaatagg atctagcgct ggtgtagttg cagctggaat tagcgcaaaa tatggttttc
     2101 gtataacttt taaccaatgg ttcaaaattg gattaccctt tacaatatca actgttttca
     2161 taggaatggt tattctcgcc atctttactc tcttatctta attagaatac actaagattt
     2221 tagtaagttg aatatgattt ttgatcgaaa tccggtaagt ttactttgtc gttttgttct
     2281 ccatcttgtc atcttcgttc aggttgttag tcttggcatt gttatcaatt acaagtttat
     2341 ctagatccct tgccttc
//
LOCUS       DASPFX010000044         2926 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2053206, whole genome shotgun sequence.
ACCESSION   DASPFX010000044 DASPFX010000000
VERSION     DASPFX010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2053206"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            248..433
                     /locus_tag="VD694_00925"
     CDS             248..433
                     /locus_tag="VD694_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11291.1"
                     /translation="MLDHEHNVSFLGRTIKEGAKALQFIIGESHGTAITDIAISKAKS
                     IFGTFTPDGTDLIRPSS"
     gene            654..1853
                     /locus_tag="VD694_00930"
     CDS             654..1853
                     /locus_tag="VD694_00930"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HXW11292.1"
                     /translation="MLLKGINSRYRYSVPDMLDESADGSYQSGGENNGDTVLVVNPSS
                     GSGTTGKNWDNLYAQIKNIFEESPKVAFTKKSGDGIILTRGFLKNGFKNIVAIGGDGL
                     INEVANGFFSIHVKEERRRGRVNKDTNVSINDGASEVHEEEIQHVLEPVNPNAFMAIM
                     PCGTRNVIAKSLDLPSQLEDCCQRIVNGNPVKIDVISAAVTQISENDTIDSNIVSELD
                     SPRIFLNAAEIGVGAEIIDRSKKIRDTVKSRILSTVTSMIATIPTYSSNVCELSVDEG
                     RKKLITKMTMAVVANGRYLGGGFMAAAKAHISDGLLDVVVLKNSGSLKMLDEFVKMRG
                     DDNNNKNNGDEYTDDGNMLYTRAKKLSMKSVEQEKKDITVVIDGEPIGILPATFQVHS
                     NALNLKM"
     gene            2685..2903
                     /locus_tag="VD694_00935"
     CDS             2685..2903
                     /locus_tag="VD694_00935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11293.1"
                     /translation="MTIKIELPQSQYDIALSVATRLNQENVLKEPKVEELLIATLSIL
                     IDEYKENSRSVVTYYMKRKTLDTKDKRT"
BASE COUNT         1023 a          459 c          590 g          854 t
ORIGIN      
        1 tgtgatgatg agccagatct gttacattta tttggacaag ctctcaaatc gaaatacaat
       61 gtaattcaag ttagctctag caagagtgtt gtcaaattag aatatggaaa gaggagtaga
      121 attgatgttg cttgcgcatg cagaagttag atacctagta ttacaatatt tttgtctgtt
      181 gcatcgtctt tgcttctttt atgggggatc caatcatcgt tatttttctt caaatgtcct
      241 cttatgtttg cttgatcatg aacataacgt aagcttcctt ggtagaacta taaaagaggg
      301 tgcaaaagca ctccaattta tcataggtga atcccatggt actgctatta cagatattgc
      361 tatctctaaa gccaaatcta tattcggaac atttacccca gatggaactg atcttattcg
      421 cccctcatca taaaataaca acgcctaaaa aaggcagaaa atgaagtgaa ctgatacttt
      481 aattataaga tgaataaaaa actgaaacct tggctactga ataacgatat acgcacacct
      541 cttaaacgcc ttgaaatgtc cgtacttacc acatgactat ttttaaaccc gtaaaccttt
      601 aaaagttatg cttatcattt cataataagg aacaaaaact atgatgagta aaaatgttat
      661 taaaaggtat aaactcccgg taccgatact ctgtacctga tatgctcgac gaaagtgctg
      721 acggttctta tcaaagcggt ggcgagaata atggggatac tgtcttggtg gtcaatccaa
      781 gttcaggtag tgggacgact ggaaaaaatt gggacaacct atatgcccaa ataaaaaata
      841 tttttgaaga gagcccaaaa gtggcattta ctaagaaatc aggagatggg attattttga
      901 ctagaggatt tttgaaaaat ggatttaaga atattgttgc tattggaggg gatgggttga
      961 taaatgaggt tgcaaatgga tttttctcca ttcatgtaaa ggaagaacgc agaagaggaa
     1021 gagtaaacaa agatacaaat gtatccatta atgacggcgc atctgaagta cacgaggaag
     1081 aaatacaaca cgtgttagaa ccagtaaatc ctaatgcgtt tatggctatt atgccatgtg
     1141 gaacgaggaa tgttatagcc aaatcactag atcttccttc tcaactggaa gattgttgtc
     1201 agaggattgt caatgggaac ccagtaaaaa ttgatgtaat aagcgcagca gtcactcaga
     1261 tctcggaaaa tgatacaata gacagcaata ttgtatcaga attagattct cctcggattt
     1321 ttcttaatgc agctgaaata ggagtaggcg ccgagattat agatagatcg aaaaagatta
     1381 gggatacagt aaagagccgt atattatcca cagttacaag catgattgct acgataccga
     1441 catattccag taacgtttgt gagctttctg ttgatgaagg acgtaagaag cttattacaa
     1501 agatgacaat ggccgttgta gctaacggca gatatcttgg aggaggattt atggcagcgg
     1561 caaaggcaca tatttcagat ggattattgg atgtagtcgt actgaagaat tcaggaagtc
     1621 tgaaaatgtt ggacgaattt gtgaaaatga gaggggatga caataataat aaaaataatg
     1681 gtgacgagta tactgatgat ggtaacatgt tgtatactcg ggcgaagaag ctctctatga
     1741 aatcagtaga gcaagaaaaa aaagacatta cggttgttat agatggtgaa cctattggaa
     1801 ttctgcccgc aacatttcaa gttcattcaa atgccctaaa tctaaaaatg tgaaagtaca
     1861 cgtatttgaa tgtgtggtca attagaagtt taatgttatt tgtgctaaag tgaaactgac
     1921 ctacaggggg ttcgtgaatt tgttaaaaca atgcaacgcg tttagccgtg tcatcatgag
     1981 aacggaatga agttcagtga agccaatagc ctaaaaaatt cttagagccc aaaagtaaca
     2041 tttactgaga aatcaggaga ctattttggc atgaatgatt tcaggatttg tagaaagata
     2101 attccaaaac tagcaaaata attaataact tgatcattgc taatctgttg tgctttacat
     2161 gtctttcagt gattgctagc cctaatctat tagtctaaaa ataacagtca atgccaattg
     2221 aaaacaggct gtaactagta gtatcgggtg acaacaatgt ttttgataca gattggtttt
     2281 agacctgaag tagcattttc gattttactg tcaaatagag gattatcttc ataaagagaa
     2341 gcaatattca tataatttaa agaatgccag tcacatataa gcacatatat tttatatact
     2401 tacgttgaaa tgttggcttt agttgggatg gaatatcgtc atgatgcttt tcgatagccc
     2461 aatgaacgca gctcaatgtc gtagtgtcgt aagatccaat taataaaacc agtagactgg
     2521 tcggtctatg gggcttttat cattgtgtat atcgactata aattaggtat ccagtttaac
     2581 cgagcttatt taaggtagac tctgtaaata ccaattccga tctgtatact agttcatctt
     2641 catacaatat atacaagtat aattgtaaca atttagacaa attggtgacg ataaagatcg
     2701 aactacctca atcacaatat gatattgctt tatccgttgc aacaagactc aatcaagaga
     2761 acgtcctgaa agaaccaaaa gtagaagagc tattgattgc aactttgagt atattaatag
     2821 atgaatataa agaaaattct cggtcagtag ttacctacta catgaaaaga aagactttag
     2881 ataccaaaga taaacgcaca tagaatgaaa aatactctgg tacaca
//
LOCUS       DASPFX010000045         5290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1582052, whole genome shotgun sequence.
ACCESSION   DASPFX010000045 DASPFX010000000
VERSION     DASPFX010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5290
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1582052"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="VD694_00940"
     CDS             complement(<1..384)
                     /locus_tag="VD694_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017728.1"
                     /note="functions in a trimeric complex to guide RNA-target
                     RNA complexes for the purposes of pseudouridylation; box
                     H/ACA RNA-protein particle consists of Cbf5p, Nop10p and
                     Gar1 along with the guide RNA and ribosomal protein L7Ae;
                     enzymatic component that functions to isomerize uridine to
                     pseudouridine in target RNAs; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided pseudouridylation complex
                     pseudouridine synthase subunit Cbf5"
                     /protein_id="HXW11294.1"
                     /translation="MTLKIDTLEIINDDVTSTKYGHYPDKRPLDVLMDNGIILVDKPS
                     GPTSHEIVAWTKRILGITKAGHSGTLDPGTTGLLPIGLGEATKALSILLLGPKEYFAI
                     ARIHQQMNLDIIDKLLGQFTGEIYQR"
     gene            complement(398..985)
                     /locus_tag="VD694_00945"
     CDS             complement(398..985)
                     /locus_tag="VD694_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase family protein"
                     /protein_id="HXW11295.1"
                     /translation="MLKSGKMHNISIVVSGSAAVGKTTLAHALAKEFGFKLYNGGDIL
                     KEIARQQGYLISGDDWWDSNDAIGFMKERKKNSVFDRQVDEKLISIAKKGNVIITSHT
                     LPWLTSAPITFWLSASQRSRSERMSKRDKISVEEALEIVKMRDRENKKIYKKIYGSQF
                     GESLEVFDFMINTELLTLDSLVVLCKEIIKKMKIQ"
     gene            complement(1051..1641)
                     /locus_tag="VD694_00950"
     CDS             complement(1051..1641)
                     /locus_tag="VD694_00950"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HXW11296.1"
                     /translation="MEEPRKKTVIIVGVPGVGKSTIITNATETLRNKGRSVKTVVFGS
                     VMFEEAKKLGINDRDKLRKLTIDVQQKLQNMAAEHISGLNDSIVFVDTHLFIKTQSGY
                     YPGLPMNLILKMNPQRLILITANSDEILNRRRKDTTRTRDMISVDEINRDIQVSLSMI
                     SSLSIITGAPFEIIYNHDDMVDSAISQLVELIVKPS"
     gene            complement(1628..3058)
                     /gene="secY"
                     /locus_tag="VD694_00955"
     CDS             complement(1628..3058)
                     /gene="secY"
                     /locus_tag="VD694_00955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HXW11297.1"
                     /translation="MSTVHNESIVRTVIKKVSGYIPQVEKPKKKIGLSEKFIWCGIAL
                     LAYLVMGQIPLYGVTDSPQFDFLAFARVIFAAQQGTLLELGIGPIVTAGLLMQLLKGS
                     ELIKLNFKDPDDRSLFTSATKIVTIIVIIAEGALYGISVYGGLLAHPSLIPILIGQLI
                     GASIVVMYLDELIQKGWGLGSGISLFIMAGVAQGILWAIFSPLPAQDGPVGIIPFIID
                     SATQGDLANTLFRSGQLPSIFGLIVTSLVLLALVYTQGIHVDIPIVSTKYRGFTAVYP
                     IKLLYTSNIPVILASALLANAVFMGQMLWANYNPDNSNPLFNWIAQFDPQQSQSPTGG
                     ILYYITSPNSFENALSDPVRTIVYIIFLTAVVTVFGRLWVELGGLSAKAAAKNLLDAD
                     VQVPGFRRTQSSVQTLLNKYIPAVTIAGGIIIGLLASVSNVLNVFGTGIGILLMVDIL
                     VNYYNLLIREQVDVHMPKLAALLGRT"
     gene            complement(3039..3473)
                     /locus_tag="VD694_00960"
     CDS             complement(3039..3473)
                     /locus_tag="VD694_00960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uL15 family ribosomal protein"
                     /protein_id="HXW11298.1"
                     /translation="MATRLRKSRRHRGTRYCGWGQIGQHRQSGSRGGIGGGGKHKHFW
                     IRTVIEEPDHFGHDTLNSYSRFLVKKWINLRDLKNLSIKFGNKRDQKTILDLGSLGIQ
                     KLLGGGKIGDSYVIKVAQASASAKKKVESAGGSIISNEHSAQ"
     gene            complement(3546..4010)
                     /locus_tag="VD694_00965"
     CDS             complement(3546..4010)
                     /locus_tag="VD694_00965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HXW11299.1"
                     /translation="MALLVVRMRGTVNVPYWALTTLKNLSLNRKFSATLVPETSNYMG
                     MLRKVNQWVAWSKADSDIIKTLIEKRGKKKGSEMESGEEKKTKSEYKGIDELANTIAS
                     DKIKFSEQNNIKPWFTLNPPKGGFKKSTKKQFSDGGILGNNKELVEIVKRMV"
     gene            complement(4017..4634)
                     /locus_tag="VD694_00970"
     CDS             complement(4017..4634)
                     /locus_tag="VD694_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HXW11300.1"
                     /translation="MSNPRRDEQTTVWKPRTALGQMVVENKISSMEQIYENGMRIQES
                     EIVKHLLPDIKSQVVHVGIVQKQTDAGEMTRFSALVAVGNEAGWFGIGMGKAHQMRIA
                     IDKATINSYLHIIPVKLGCGSWECRCAQPHSVPFNVRGRGGSVKVEILPGPRGLGLVA
                     GENIKNLLKLAGIKDAWTKSFGSTSTMTSTAMAIFNALNSTYITG"
     gene            complement(4631..>5290)
                     /locus_tag="VD694_00975"
     CDS             complement(4631..>5290)
                     /locus_tag="VD694_00975"
                     /inference="COORDINATES: protein motif:HMM:NF006342.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HXW11301.1"
                     /translation="YRKREKLLIGKKDFVTVNVSDQNVSAQLIRPDLLGDKVMASVHS
                     NELLSYGWKGSRKNIPSCYLVGLLLGKKCIQKKITSAILYIGKRHFTTKIAACLKGMS
                     EAGLEMPFSEEILPSEERIQGNHIADYAKKIKSNDDLYKSRFSSNLGSGLEPEKYPSH
                     FSEVKDRIVNDKREKKSEKSVKSDKPEKSEKSVKSDKPEKPDKAPKTTKAKASKKGDS
                     K"
BASE COUNT         1503 a         1152 c          832 g         1803 t
ORIGIN      
        1 tctctgataa atctctcctg taaattgtcc gagcaattta tcgataatat caagattcat
       61 ctgttggtga attcttgcaa tagcaaagta ttcttttggt cccaataata gtatggaaag
      121 tgctttggta gcctctccta atccgatagg tagaagacca gtagtccctg gatcaagcgt
      181 tccactatga ccggccttag taatcccaag gattctcttt gtccaggcca ctatttcatg
      241 gctagtaggc cctgaaggct tatctacaag tattattccg ttgtccatta atacatccag
      301 gggtctctta tcaggataat gtccatactt tgtgctagta acgtcatcat ttataatttc
      361 tagtgtatca atttttaagg tcatatctgc tcttatatta ctgaatcttc atcttcttta
      421 taatttcttt acacaaaaca acaagtgaat caagagtgag aagttctgtg ttaatcatga
      481 aatcaaaaac ttcaagactt tctccaaatt gtgagccata aattttcttg taaatttttt
      541 tgttctctct atccctcatt tttactattt ctaaagcctc ttctacggat attttgtctc
      601 gttttgacat tcgttcagat ctacttcttt gagaagcgct tagccaaaaa gtaattggtg
      661 cagaagtcag ccaaggaaga gtatgactag tgataataac gttacctttc ttagcaatac
      721 ttattagttt ttcatcgact tgcctgtcaa atactgaatt cttcttacgt tccttcataa
      781 aaccgatggc gtcattagaa tcccaccaat catctccaga tatcaggtat ccttgttgac
      841 gcgcgatttc cttcagaata tccccaccgt tatacagttt aaacccaaat tcctttgcaa
      901 gagcatgcgc aagtgtagtt tttcccacag cagcgctgcc tgaaacaact atactaatat
      961 tgtgcatctt gccagatttc aacataatgt cacattaata ctgtcaacac attgtccata
     1021 tctatgttgc ccacattttg agtctatcaa tcaactaggt ttgactatta attctactaa
     1081 ttgtgatatt gcagagtcta ccatgtcatc gtgattataa ataatttcaa aaggagctcc
     1141 tgtaataatg gaaagtgagg aaatcatgga caaggaaacc tgtatatctc tatttatttc
     1201 gtcaactgaa atcatatctc ttgtcctagt ggtgtctttt cttcgcctat tcagaatttc
     1261 atcggaattt gcagttatca aaattagtct ttggggattc atttttaata tgaggttcat
     1321 tggtaatcca gggtagtatc ctgattgtgt tttaataaag agatgcgtgt caacaaatac
     1381 tattgaatcg ttaaggccag agatatgttc ggcggccata ttctgtaact tttgctgtac
     1441 atctattgta agttttctga gcttatctct atcatttatt cccaatttct ttgcttcctc
     1501 aaacattact gatccaaaaa caactgtttt cacagatctt cctttattcc gtaacgtttc
     1561 ggttgcattg gtaataatag tacttttacc aacaccagga acaccaacaa tgatcacagt
     1621 tttttttcta ggttcttcca aggagtgccg ccaatttagg catatggaca tctacctgtt
     1681 ctctgataag aaggttataa taattaacca aaatatctac cataagcagt atacctattc
     1741 cagtaccaaa tacattcagc acatttgaca cagatgccaa tagtccaatt attattccac
     1801 cggctatagt tacagctggg atgtatttgt taagtaaggt ctgaactgaa ctttgagttc
     1861 ttctaaatcc tggaacttgt acatcagcat ctagcaaatt ctttgcagct gcttttgcag
     1921 ataaccctcc taactcaacc catagacgtc caaacacagt aacaacagca gtcaaaaata
     1981 tgatatacac tattgttcga acgggatcag aaagcgcatt ttcaaaactg ttgggggacg
     2041 tgatataata cagaatacct cctgtaggag attgcgattg ttgtggatca aactgggcaa
     2101 tccagttaaa cagcggattt gaattatcag gattatagtt agcccataac atctgtccca
     2161 taaaaacagc attcgctagc agtgccgaag ctaaaatcac aggaatgttt gaggtatata
     2221 gcaactttat aggatatact gcagtaaatc ctcgatactt tgtagatact atgggtatat
     2281 ccacatgaat accttgtgta taaacaagag ccaataacac caatgaagta acaatgagac
     2341 caaatatact gggtagctga ccacttctga atagagtatt tgctaggtca ccctgtgtcg
     2401 cagaatcgat aatgaatgga ataattccta ccggcccatc ctgcgcaggt aatggactaa
     2461 atattgccca caaaataccc tgcgcaactc ctgccataat gaaaagactg atacctgaac
     2521 ccagtcccca tcctttttga attaattcat caaggtacat tacaactata ctagcgccga
     2581 ttaactgtcc tatcaaaata gggataagac taggatgcgc cagtaaacca ccataaacac
     2641 taataccata aagagcaccc tctgcaataa taacaataat ggtaactatt ttagttgcag
     2701 aagtaaaaag agatctgtcg tccggatcct tgaagttcag ctttatcaat tccgaaccct
     2761 tcaatagctg catcaataga cccgcagtaa cgattggtcc tattcctaat tctagtaatg
     2821 ttccttgttg tgcagcaaaa ataactctgg caaaggccaa gaaatcaaat tgtggtgaat
     2881 ctgttactcc ataaagggga atttgaccca tgacaagata tgctaataaa gcaataccgc
     2941 accagatgaa tttctcactt aatccaattt tctttttagg tttttcaact tgaggaatgt
     3001 aacctgaaac tttctttatt actgttctta caatactttc attgtgcact gtgctcattt
     3061 gaaattatgc tacctcctgc cgactctact ttcttcttag cacttgcaga tgcctgtgct
     3121 acctttataa cataactgtc accaattttt ccgccgccca agagtttctg aattcccaat
     3181 gatccaagat caagaattgt tttttgatct cttttattac cgaactttat tgagagattt
     3241 tttaaatctc tcaagtttat ccattttttg accaaaaatc tactataaga attaagagtg
     3301 tcatgtccga aatggtcggg ctcttcaata acagtacgaa tccaaaaatg cttatgtttt
     3361 ccgcctccac ctattccacc ccggcttcca gattgtctgt gttgacctat ttgaccccat
     3421 ccgcaatatc ttgttcctcg atgtctgcgg ctttttctca atctagttgc catgtatgat
     3481 ataccttata caatcaaaat aagtgtgtaa atataaatgt aaaactcatg tcatcttcag
     3541 caatgtcaaa ccattctttt tacaatttca actaattctt tgttatttcc aaggataccg
     3601 ccatctgaga actgtttttt agtactcttt ttaaaaccgc cttttggtgg atttaatgta
     3661 aaccagggct ttatattatt ttgttctgaa aactttatct tatcgcttgc gatggtgttt
     3721 gccaattcat caatcccttt gtactcggac tttgtcttct tttcttcccc ggattccatt
     3781 tcagaacctt tcttcttgcc ccttttttca atcaatgttt ttataatatc agagtcggct
     3841 tttgaccatg ccacccactg atttactttt ctcaacatgc ccatgtaatt cgacgtttct
     3901 ggaacaagag tagctgaaaa tttccggttt aaagataaat tcttaagcgt agtcaatgcc
     3961 cagtaaggga catttactgt tcctctcatt ctaactacta ataatgccat tttttttcaa
     4021 cctgtgatgt aagtagagtt aagtgcatta aatattgcca ttgcagtcga agtcatagta
     4081 ctggtagatc cgaatgactt tgtccatgca tcttttatcc ccgccagctt caatagattt
     4141 ttaatatttt cacctgcaac cagacccaat ccccttggac ctggtagaat ctctaccttc
     4201 acacttccac ctctacctcg aacattgaag ggaacagaat gtggttgagc gcaacggcat
     4261 tcccagctac cacaacccaa ttttactgga attatgtgaa gatatgaatt aatcgttgcc
     4321 ttatcaattg caattctcat ttgatgtgct ttgcccattc ctattccaaa ccatccggcc
     4381 tcgttaccta cagcaactag cgcactgaat cgcgtcattt ctccagcgtc tgtttgtttt
     4441 tgcactattc caacgtgtac aacttgactc tttatgtcag gaagcagatg ctttactatt
     4501 tctgattcct gaatacgcat tccattttca taaatctgct ccatcgaact aatcttattc
     4561 tcaactacca tctgtcctaa tgcagtgcgc ggtttccata ctgttgtctg ctcatccctc
     4621 ctaggattgc tcattttgaa tctcctttct tggaagcttt tgcctttgta gttttaggtg
     4681 ccttgtctgg tttctctggc ttgtctgatt taactgactt ttctgatttc tctggcttgt
     4741 ctgatttaac tgacttttct gatttctttt ctctcttgtc atttacaatt ctatccttta
     4801 cttctgaaaa atgacttgga tatttttctg gttccaatcc tgatcccaaa tttgacgaaa
     4861 atctcgattt atataaatca tcgttagact ttattttctt tgcataatct gcaatatgat
     4921 ttccttgtat tctttcttca gaaggtagaa tctcttctga aaaaggcatc tctaatcctg
     4981 cctcagacat acccttcagg cacgctgcaa tctttgtagt aaagtgcctc ttaccaatgt
     5041 ataatattgc acttgtaatc tttttttgaa tacatttctt acctaataaa agaccaacca
     5101 gataacatga aggaatattt ttgcgggagc ccttccatcc atatgacaat aactcgttac
     5161 tatgtacaga ggccattact ttatcgccaa gaagatctgg tcttattaat tgagctgaaa
     5221 cattttggtc actaacatta acagtcacaa aatccttctt tccaataagc aatttttctc
     5281 tcttcctgta
//
LOCUS       DASPFX010000046         4898 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2125021, whole genome shotgun sequence.
ACCESSION   DASPFX010000046 DASPFX010000000
VERSION     DASPFX010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4898
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2125021"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VD694_00980"
     CDS             complement(<1..347)
                     /locus_tag="VD694_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11302.1"
                     /translation="MKVPICIFDAKTGVLCPKCESRLKNGELSTIDVESSIKLIKLSH
                     KNQDIDKLNLIGSQKIDEDYVLILKDSNVSNINSDDELMHSVEKEFNGKVWFVEANSS
                     IRRFLENLFFPIR"
     gene            462..1436
                     /locus_tag="VD694_00985"
     CDS             462..1436
                     /locus_tag="VD694_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HXW11303.1"
                     /translation="MNFALNVNNLKVHYFTQFGNVKAVDDVSFSLAKNESIGIVGESG
                     CGKSTLGAALLRSVPFPGKIVDGQIILDSQNITNLSDTEFDKNIRWKEISMIFQGALN
                     TLDPVFTVGSQMKEILKQHGYSGDDFDVISNSLESVLLEPTIIKKYPHELSGGMKQRV
                     AIAMALLLNPRILIADEPTTSLDVMVQSQIINLLKKLKKNRNMSIVFISHDLGVISEV
                     SETIAIMYRGQLVELGKSSEIYKNPKHPYTEKLVASIPNLKNEENIPLKPDRKSKGFE
                     IIESSQESSVRETGCKYLDNCPYAKEKCRTDPPLINDKNGFVRCWLYE"
     gene            1580..2668
                     /gene="fbp"
                     /locus_tag="VD694_00990"
     CDS             1580..2668
                     /gene="fbp"
                     /locus_tag="VD694_00990"
                     /EC_number="3.1.3.11"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphate aldolase/phosphatase"
                     /protein_id="HXW11304.1"
                     /translation="MKITLSAIKADIGAIGGHTRPSDELVEAVNKVVKENSKLLLDYY
                     IGYTGDDIHIVMTHTRGTDNKEIHKMAWDAFTEGTKVAKEQGLYGAGQDLLKDAFSGN
                     VRGMGPGVAEIDIEERPSEVFCVFAADKTEPGAFNFPLWRMFVDARSSTGLLINERLA
                     EGVKFRIMDVMTGKIAGLKLWGDKPELETALMYPGRYVVHSVLSSEGEQIVSASTDRL
                     HNIAGTYVGKDDPIAIVRTQKNFPATEEAGSAFNDPHYVAGNTRGSHHMPLMPVKLNS
                     AASLNYAIPIVSCLVFSMHNGILTGPHDGFGTADWDLQRQWASERAMIMRNQGFIHPA
                     TLVPDELEYNKGYEARMEKLNSKFEDIS"
     gene            2677..3351
                     /gene="tpiA"
                     /locus_tag="VD694_00995"
     CDS             2677..3351
                     /gene="tpiA"
                     /locus_tag="VD694_00995"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HXW11305.1"
                     /translation="MLTFVNPLVINLKNYNEISGDKSLKIAEEAKKVFLSNHKEIIIA
                     PPASSIMALSETKLPIISQHVDDAPLGATTGFVIPEIAKSHGAIGSIINHSEHKIEHM
                     QVSNLVKRLKELDMISIVCADDLEEVEALSQFSPDYLAIEPPELIGKGIAVSKANPSI
                     IIDSVQMVKRISPKVKVLCGAGIVDKTDVHKALELGAEGILISSGVVKSASWYDKILE
                     LSSVLK"
     gene            complement(3385..3645)
                     /locus_tag="VD694_01000"
     CDS             complement(3385..3645)
                     /locus_tag="VD694_01000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11306.1"
                     /translation="MKDTRLLKILVEEKALVKLLKTIGSGREYPTRELLTKLGAYGYG
                     HKLLLKAQKRGLVDRKTVKNKVFNRLTNDGKKIVKIAKEIGV"
     gene            4298..>4898
                     /locus_tag="VD694_01005"
     CDS             4298..>4898
                     /locus_tag="VD694_01005"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11307.1"
                     /translation="MALENIKQIRNNDSIESSATNRIQCNQCQSYTLVLDALSSEYVC
                     STCGCVSNEKIYTNDLPYFEKGEYKDKSRIGMPESLTISHKGLSTLIGLNDMDGRGKM
                     LDPVQKETIQRLRTWNNRSQLNDSISRNLDKALKYLNNFGDKLYLSPAVMENAAYIYR
                     KAAIRKLAKGRSTVSLVAASIYAACREISIPKTISDIANV"
BASE COUNT         1695 a          806 c          916 g         1481 t
ORIGIN      
        1 atcctaattg gaaagaaaag attttcaaga aatcgtctaa ttgaactatt tgcttccaca
       61 aaccatactt tcccattaaa ttccttttct actgaatgca tcagttcatc atcggagttt
      121 atgttgctta catttgaatc ctttaaaatt aatacatagt cttcatcaat cttttgagaa
      181 cctattaaat tcagtttatc tatatcctga ttcttatgtg agagcttgat aagtttaata
      241 gaggattcta catcgatggt agacagctcc ccatttttta gcctgctttc acattttggg
      301 cataaaacgc cagtcttggc atcaaaaata caaatgggta ctttcaacta aacatcaggt
      361 tgtctactat ttttaccata tatatgtcca gtaggttctg agacataaat tgggattcga
      421 taaaatagat acttatacgg ttatgatcga taaagacttg tttgaatttt gctcttaacg
      481 ttaataatct aaaggtacat tatttcacac aatttggtaa tgtaaaggca gttgacgacg
      541 ttagttttag tttagcaaaa aatgaatcga taggaattgt gggcgaatcc ggatgtggta
      601 agagcacttt gggagcagcg ctcttacgtt cagttccttt tccaggcaaa atagtcgatg
      661 gtcaaattat tctcgactct cagaatatta ccaatttatc agatactgaa tttgataaaa
      721 atattaggtg gaaggaaatt tcaatgatct ttcagggtgc acttaacaca ttagatccag
      781 tctttactgt gggatcgcag atgaaggaga ttttgaaaca acatggttac tctggagatg
      841 actttgatgt aatttcgaat tctttggaaa gcgtgctatt agaacctacc ataattaaaa
      901 aatatccaca tgaattgagt ggcggtatga agcagcgagt tgcaatagca atggcattgt
      961 tactgaatcc taggatattg atagcagatg aaccaacaac ttcattggac gttatggtgc
     1021 aatcacaaat tatcaatctt ttaaaaaaac taaaaaaaaa ccgcaacatg tcgatagtat
     1081 tcatttctca tgacttggga gtcatatcag aagtatcaga aacaattgct ataatgtatc
     1141 gagggcaatt agttgaattg ggaaagtcct ctgaaattta taaaaatcca aaacatccgt
     1201 atactgaaaa acttgtagca tcaattccta atctcaaaaa tgaggaaaat attcccctaa
     1261 agccagacag aaagtcaaag ggatttgaaa taatagaaag ttcacaagaa tcaagtgtaa
     1321 gagagacagg atgcaagtac ctcgataatt gtccgtatgc caaggagaaa tgtcgtactg
     1381 atcccccctt aattaatgat aaaaatggat ttgttcgttg ttggctatac gaataaggat
     1441 aaagcttcat tttatttaat ccaattcaaa tgaagcaaat caaattagtt tattcaagac
     1501 aaacccaaac catgcgatac cgaagaaaat gttgaatcat aagaatttta aactccattt
     1561 atttaatagt ctacggaata tgaaaattac actttctgca ataaaagcgg atattggagc
     1621 cattggtggt catacaagac cgagtgatga actggtagaa gcggttaaca aggtggtaaa
     1681 ggagaattcc aaactgttac tggactatta cattgggtat acgggtgatg atatacatat
     1741 tgttatgact catacaagag gcacagataa caaagaaatt cacaaaatgg catgggatgc
     1801 cttcacagaa ggaaccaaag ttgcaaagga acaaggtctg tacggagcag gtcaagactt
     1861 gttgaaagac gcattttctg gaaacgtaag aggtatgggt ccaggagtag cagaaataga
     1921 cattgaagaa agaccaagtg aagtcttttg tgtttttgct gctgataaaa cagaacctgg
     1981 tgcatttaat ttcccactct ggagaatgtt tgtggacgcc agaagcagta caggcttgtt
     2041 gataaatgaa cgacttgctg aaggtgttaa attcaggata atggatgtca tgacaggtaa
     2101 aattgcagga ctaaaactat ggggagacaa gccggaatta gaaacagctt tgatgtatcc
     2161 tggaagatat gtggtgcact ctgtcttgtc atctgaagga gaacagatag tctctgcgtc
     2221 gactgataga ttgcataaca tagcaggaac ctacgttggt aaagatgacc cgatagcaat
     2281 agtaagaact cagaaaaact ttcctgcaac tgaagaagca ggcagcgcgt tcaatgatcc
     2341 tcactatgtt gctggaaata caagaggtag tcatcatatg ccattgatgc cagtaaagct
     2401 caattctgct gcaagtttga attacgcaat tccaatagtg tcatgtcttg tatttagcat
     2461 gcataatgga atccttaccg gtccacatga tggttttgga actgcagatt gggacttgca
     2521 aaggcaatgg gcttcagaaa gagcaatgat tatgagaaat caagggttta tccacccggc
     2581 tacactggtt ccagatgaac tagaatataa taagggttat gaagctagga tggaaaaact
     2641 aaacagcaag tttgaagata tctcctaaaa tttgttatgt tgacttttgt aaatccactg
     2701 gtaataaatc tcaaaaatta taatgagatt tcgggggata aatcactaaa gattgctgaa
     2761 gaggcaaaga aggtattcct atcaaatcac aaggagatca tcatcgctcc tccggcatct
     2821 agcatcatgg ctttgtcaga aacaaaactt ccgataataa gccagcatgt cgatgatgcg
     2881 ccactgggag caacaacggg ctttgtcata cctgaaatcg caaaatccca tggggcaata
     2941 ggttccataa tcaaccatag cgaacacaaa atagagcata tgcaagtaag taatttggta
     3001 aaacgattaa aagaattgga tatgatttca attgtctgtg ctgatgattt agaagaagtg
     3061 gaagcactgt cacaattttc tcccgactac ctggccatag aaccaccaga acttattgga
     3121 aaggggattg cagtatcaaa agcgaatcct tcaatcataa tagattctgt acaaatggta
     3181 aagagaatat ccccgaaggt taaagttcta tgtggagctg gtattgtaga caaaactgat
     3241 gtacataaag cacttgaact tggagcggaa gggatattga tatctagtgg agtagtaaaa
     3301 tccgcttctt ggtacgataa aattctagaa ctatcttcag tattaaaata aattcagaaa
     3361 ataaaaattg gaggaattgt tactttatac tccaatttct tttgctattt ttacgatttt
     3421 cttgccgtcg ttagttagtc tattgaacac tttgttcttg acagtctttc tatccactaa
     3481 tccacgcttt tgtgctttaa gaagcaactt atgtccatat ccatatgcac ccaattttgt
     3541 taaaagttct ctagttgggt attctctccc ggatccaatt gtctttagta gctttactag
     3601 tgccttttct tcaacaagga tttttaatag tcttgtatct ttcatcgcgc attagtagta
     3661 taactaatta tataattgtt acactttact agatacaaat atccatacat tttcgactac
     3721 cataccaaac aagttctata atcatcatta ttagaaattt ctagtattat gaataatata
     3781 acgttctgct ttatcatacg tttatattaa aggtaaagaa cgttatttgg caaaacagtt
     3841 acttaataat cattatctaa ttgaagtaat gttaatgata ctaatctaat ttgacagctg
     3901 tatgtcaaag tcaatttaga tacttactta aagatagtgt tggaaggaac attattttcc
     3961 aagatcgtat gtgaaaatct tgagtgaata aaagatctct ggtgatccta ttaaatccga
     4021 ataaacagga gacatgaaat tcaggaaatt tgatactagt aatatcggtt tacaatgcat
     4081 agtagttttc aaaaactatc atcaataatt gagccttctt actaaactaa acatttatag
     4141 attcttattt aagaaagaaa aatacgattt ttcctcgtaa ttcgagcttg aatatacatt
     4201 ttacaataaa ttctaacttt tatactcatt ttgctagtaa tttctgattt ctagaaaaac
     4261 tattgatatt aaaagaatct gctaaaaaat agtaaagatg gccttagaaa acattaaaca
     4321 aattagaaat aacgattcca ttgaatcaag tgcaactaac aggattcaat gcaatcaatg
     4381 tcaaagttat acccttgtct tggacgcact ctcaagtgaa tatgtctgta gtacttgtgg
     4441 atgcgtttca aatgaaaaaa tctatactaa tgatctgccc tattttgaga aaggtgaata
     4501 taaagataaa tctcgtatag gtatgcctga atctctaact ataagtcaca agggtctttc
     4561 tactctcatt ggattaaatg atatggatgg cagggggaaa atgctagatc cagttcaaaa
     4621 ggaaacaatt caaagattga gaacatggaa taatagatct cagcttaatg attcgatctc
     4681 aaggaacctg gataaagccc taaaatacct caataatttt ggtgacaagc tctatcttag
     4741 tccagcagta atggaaaatg cagcgtatat ctatcgtaaa gctgcgataa gaaaattagc
     4801 aaaaggaaga tctactgttt cacttgttgc ggcttcaata tatgccgcct gtagagaaat
     4861 ttcaatacca aaaacaatat cagatatcgc taatgttt
//
LOCUS       DASPFX010000047         3761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_539771, whole genome shotgun sequence.
ACCESSION   DASPFX010000047 DASPFX010000000
VERSION     DASPFX010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_539771"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VD694_01010"
     CDS             complement(<1..788)
                     /locus_tag="VD694_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HXW11308.1"
                     /translation="MLRQNACFFALALSIILVFPSLNFPFLNSRAHGQSAVSPISQEE
                     YDKLKNCTTDLSKKPTPVEYLTHFNCGHVSKNESGKTVRQFTLIVEENQKIPITYEGH
                     IFDGWTFNGTIPGPTIRVTEGDLVRIRVINSNENTHAHSLYSQPTHYVKNNAFTMTGQ
                     PGGTISPGRSFTYEFVAAPYGVYPYYCHVEPMADHINRGLYGMMIIDPKEPRPKMTEM
                     TMLLNGYDLDLDQEGPITLPPVDSIEGVQSDMSGNSSGNNNTNAG"
     gene            1064..1390
                     /locus_tag="VD694_01015"
     CDS             1064..1390
                     /locus_tag="VD694_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11309.1"
                     /translation="MQYFTALKIGEKRVRAAQEILNKYTGNIAMPALALKDNNSNNWE
                     PVGEENYFTTVKDQNGYLIAICDKNGIAKTVAQWFIDVKKDEIVNNIIKNENLPEYNG
                     KVILPI"
     gene            1424..2662
                     /locus_tag="VD694_01020"
     CDS             1424..2662
                     /locus_tag="VD694_01020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00300 family protein"
                     /protein_id="HXW11310.1"
                     /translation="MKRKYEQTIEIKGHLIDSMILTRIFDKVMDLKGDFNVLEFHVGK
                     KKDELSYARLLISGRNKKHLDQLLASVFIEGAQPTKIDGVALKPAPSEMVMPRDFYST
                     TNNTTQIFFNNEWIDVENMMMDKCIVVDVSSKTAECRKIRDIQKGDMIVTGEKGVRIL
                     PEERPREGVDIFQFMSSTSSSERPTQQIARKIAMDIYNTKNSGGKIIVTAGPVVVHSG
                     AADSLAKMIRMGYVNGLLTGNALAVHDIENSLFGTSLGMNVKNGTLAIRGHRNHMQAI
                     NEVFRAGSIEEMVKRNILKSGIMYECIKNNVEYALCGSIRDDGPIPGVITDIIQAQNK
                     YRSILRNTKMVLMLSTMLHSIAVGNMIPARVKVVAVDISQAVVTKLLDRGTTQAIGIV
                     SDIGAFLPMVLQQLEQISKK"
     gene            complement(2730..>3761)
                     /gene="gatB"
                     /locus_tag="VD694_01025"
     CDS             complement(2730..>3761)
                     /gene="gatB"
                     /locus_tag="VD694_01025"
                     /inference="COORDINATES: protein motif:HMM:NF004012.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HXW11311.1"
                     /translation="EGGMNVRNAALIDYNRAGVALIEIVTEPDFTGPKEVRQFLDKLS
                     LTLEHLGVCDTLLEGSIRCDVNVSMNGGNKVEIKNINSFKEAEKAINYEITRQSSVYS
                     RNLKIEHETRHWDDKKKITFSARSKEEEHDYRYFPEPDIPVIVLGNEFVANLKKRMPE
                     LPNERFERFRSKYKLSDHTSNILINDKRLADFFESTLKLHFSPVEIANILVTEFKSLI
                     EDDTDSRDYLKNLKVKPEHIAELVKLIEGSKISRTTAKDILVKIFESGKLPTEVVNSS
                     NSYKIADEKTIMDAVQSVFDNEKSAVEDAKKNREAINFLLGKVMKYTNGRADAKIAMR
                     LINSKLNES"
BASE COUNT         1191 a          665 c          707 g         1198 t
ORIGIN      
        1 cctgcattag tattgttgtt accacttgag ttgcccgaca tgtcgctttg tactccttca
       61 attgaatcaa ctggcggcaa tgttatcggc ccttcttgat ctaaatccag gtcatagccg
      121 ttgagaagca tagtcatttc cgtcatttta ggacggggct cttttggatc gatgatcatc
      181 atgccatata atcctcggtt aatatgatct gccattggct ccacatgaca gtaatatgga
      241 tacaccccat agggtgctgc aacaaactcg tatgtgaaac tcctgccagg ggaaattgtt
      301 cctcccggtt gtcctgtcat cgtaaatgca ttattcttaa cataatgggt tggttgtgaa
      361 taaagagagt gagcatgtgt gttctcgtta ctattgataa ctctaattcg aaccaaatct
      421 ccttccgtga ctcttattgt gggtcctggt atagtaccgt taaatgtcca accatcaaaa
      481 atatgaccct cataagtaat gggtatcttt tggttttcct cgacaattaa tgtaaattgt
      541 cttactgtct ttccgctttc attttttgat acatgaccgc aattaaaatg agttagatat
      601 tctactggag tgggtttttt gctgagatct gttgtgcaat tttttaactt atcgtattct
      661 tcttgagata tcggcgacac agcagactgg ccatgtgcac gagaattcaa gaaaggaaaa
      721 tttaaagatg gaaaaaccaa aataattgac aaggctaatg caaagaaaca tgcattttgc
      781 cgtaacatat tttatcaaga atactgttct tataaaaatg ttaatcatac cacttgaact
      841 ttgatacaag aatatcattt ttatgtgcat tttccaacat tgctcttaca attgttgaat
      901 gaagggattc cgaatgtttt cattatttgt atctcaggta ctgtttagtt gaagttcatg
      961 ttttgactct ggaatattgt tccttcaata ccattgaccg caattaattt gactcaacta
     1021 tcacgctaaa cgcaaatata aaagagtggt atatactcaa taaatgcagt acttcacggc
     1081 cttgaaaatt ggcgaaaaac gagtcagagc agctcaagag atcttaaaca aatatacagg
     1141 aaacatagct atgcctgcgt tagcattaaa ggacaataac agcaacaatt gggaacctgt
     1201 tggagaagaa aattatttca ctacagtaaa ggatcaaaat ggttacttga ttgcaatatg
     1261 tgataaaaat ggaattgcaa aaacagttgc acaatggttt attgatgtta aaaaagacga
     1321 gattgtcaac aatataatta aaaatgaaaa ccttcctgag tataatggta aagtgatatt
     1381 gccaatttaa cacttaagta catttaatat ttagtgatca tagttgaaaa gaaaatacga
     1441 acaaaccata gagatcaaag gtcatctaat tgactctatg atcttgacaa gaatttttga
     1501 taaggttatg gatctaaaag gagattttaa tgttctcgaa tttcatgttg gaaaaaagaa
     1561 ggatgaacta agttatgcaa ggttattgat ttcaggaaga aataagaaac atcttgacca
     1621 actattagca tcagtcttta ttgaaggtgc acaacctaca aaaatcgatg gtgttgcgtt
     1681 aaagcctgca ccaagtgaaa tggtgatgcc aagagatttt tacagcacaa ctaacaatac
     1741 cacacaaatt ttcttcaata atgaatggat tgatgttgaa aatatgatga tggacaaatg
     1801 tattgtcgta gatgtaagta gcaagactgc agagtgtcgg aaaattagag atatccaaaa
     1861 aggtgatatg atagtaacgg gtgaaaaagg ggtcagaata ttacctgaag agcgtcctag
     1921 agagggagtg gatatttttc aattcatgag tagtactagt tcaagtgaaa gacctactca
     1981 gcaaatcgca agaaaaatag caatggatat ttacaataca aaaaatagcg gtggaaaaat
     2041 aattgtcaca gccggaccag ttgtcgtcca ttcgggcgcg gcagattcgt tagcaaaaat
     2101 gataagaatg ggttacgtaa acggactact tacgggtaat gccttagcgg tccacgatat
     2161 agagaattca ttatttggta cctcgctagg tatgaatgta aaaaacggaa cgctagcaat
     2221 tcgtggccac cgaaaccata tgcaggccat caatgaagtt tttagagctg ggtctataga
     2281 agaaatggtg aaaaggaata ttctaaaatc gggaataatg tatgaatgta taaagaacaa
     2341 tgtcgagtat gctctatgcg gatctataag agatgatggg cctattccag gagtgattac
     2401 tgatattatt caggcccaaa acaaatatag atcaatattg agaaatacaa aaatggttct
     2461 catgctttct accatgttac actcaattgc ggtagggaac atgattcctg caagagtaaa
     2521 ggttgttgca gtcgatatca gtcaagccgt tgtaacaaaa cttctcgata gaggaacaac
     2581 acaggctata ggaattgtta gcgacattgg cgcctttctt ccaatggtct tgcagcagtt
     2641 agagcaaatt tcgaaaaaat agatccatca ttcagaagga tctaagcagg attgttggta
     2701 aattgcaatt gcaatgaaaa tcactacttt taagattcat ttaatttact attaattaga
     2761 cgcatagcga tttttgcatc tgctcgtcca ttggtatatt tcataacttt acctagtaag
     2821 aaattaattg cttctcgatt cttttttgca tcttcgactg cagacttttc attatcaaaa
     2881 accgactgaa ctgcatccat tattgttttt tcgtcggcta ttttgtaaga attgctacta
     2941 ttgactacct cggttggtaa ctttccactt tcaaatattt tgaccagaat atcctttgcg
     3001 gtagttctac taattttact tccctcaatc aatttcacca attctgctat gtgttctggt
     3061 ttcactttca agtttttcaa gtagtcccta ctatcggtat catcttcaat caaactttta
     3121 aattctgtaa ctaggatgtt tgctatttca actggtgaaa agtgtaactt caaagtggac
     3181 tcaaagaaat ctgctaatct tttatcattt atgagaatat tggatgtatg gtctgagagc
     3241 ttatattttg atctaaagcg ttcaaatctc tcatttggaa gttctggcat tcgtttcttt
     3301 agattagcaa caaactcatt ccctaatact attactggaa tatcgggttc tggaaaataa
     3361 cgataatcat gttcctcttc tttgctcctg gcgctaaaag tgattttttt cttatcatcc
     3421 caatgtcgtg tttcatgctc tatcttaaga ttgcggctat atacactgga ctgccgggta
     3481 atttcatagt tgatggcttt ttcagcttcc ttgaaggaat ttatattttt gatttccacc
     3541 ttgttaccac cattcatgga cacatttaca tcacacctaa tcgaaccttc aagtagagta
     3601 tcacatactc caagatgttc gagggtcagc gatagtttat ctagaaactg tctgacctcc
     3661 tttggacctg tgaaatcggg ttctgtaact atttcaatca aggctacccc tgctctgtta
     3721 taatcaatca gtgcggcatt tctgacattc attccaccct c
//
LOCUS       DASPFX010000048         2418 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_156271, whole genome shotgun sequence.
ACCESSION   DASPFX010000048 DASPFX010000000
VERSION     DASPFX010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156271"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VD694_01030"
     CDS             <1..411
                     /locus_tag="VD694_01030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11312.1"
                     /translation="IWIFYLPENAIIGFILTTIVSILLGILVSMNIYAIGHSRLKISR
                     KSLFSGSSLSIISGVCSSCSSVGFLLISTFGSIGVITTNLLTIYQIPLRIISVAILIF
                     ALYYIHKRIMQSCVLDFKNNNMKTDQKYQKKSDI"
     gene            complement(539..880)
                     /locus_tag="VD694_01035"
     CDS             complement(539..880)
                     /locus_tag="VD694_01035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11313.1"
                     /translation="MTINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIDCI
                     EWVLEKIKVDKVHNDRLDGLIRKMIEDLEIRKDKAMRRPDTDDLWTKIETLQWVLYII
                     FAIKNERMVVI"
     gene            complement(939..1385)
                     /locus_tag="VD694_01040"
     CDS             complement(939..1385)
                     /locus_tag="VD694_01040"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11314.1"
                     /translation="MITATANKHYLQTLVRKFPDAAIKRIMIVDASDDVNLTFKIVLS
                     ESDRRLRVESFNDPVDALREFRPDFYHLVIIDILMPKMNGFELYNRLKKLDSNVKICF
                     MTTGSEIFLREFAKEAFPEFDLNCFIRKPIANEDLLKRVQEVLESE"
     gene            complement(1912..2142)
                     /locus_tag="VD694_01045"
     CDS             complement(1912..2142)
                     /locus_tag="VD694_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HXW11315.1"
                     /translation="MPTAYVLINYEIGAEKDILNKLKTVPGVIEASEVNGVYDIVVKI
                     ASASLDSLKDTITRDIRAIDRVRSTMTLIVIE"
BASE COUNT          718 a          443 c          401 g          856 t
ORIGIN      
        1 atttggatct tttatctacc cgagaatgcg attataggat ttatcttgac tacaatagtt
       61 tcgatcctat tgggaatctt ggttagcatg aacatttatg ctatagggca ctccagactg
      121 aagattagca ggaaatcatt attttctgga tcgtctctga gcatcatatc cggtgtatgt
      181 agtagttgtt catctgtagg atttctgttg atatctacat tcggtagcat tggcgtcatt
      241 actactaatc tcctcacaat ttatcaaatc ccattaagaa taatctctgt tgcgattcta
      301 atttttgcct tatactatat acataagagg attatgcaaa gctgtgttct ggattttaag
      361 aacaacaata tgaagactga tcagaaatac cagaaaaaat ctgatatctg agtgaacgtc
      421 aaggggtaaa atgattatta ttgaaaggcc tcaatgccag gatttgtttt ataacttcgg
      481 gaggcaactg gatatgagtg gaaatagtag tagatagtat cgttctaccc aatagacttt
      541 aaattacaac cattctttca ttctttatag caaatataat ataaagaacc cattgaagag
      601 tttcaatctt tgtccataag tcgtcagtat ctggtcttct catggctttg tcctttctta
      661 tttctagatc ttctatcatt tttcgaataa gaccgtctaa tctatcattg tgaaccttgt
      721 ctacctttat tttttcaagc acccattcta tacaatctat ctgcaatcgc atatcatgat
      781 tgaatcttgc actgtgttct ggatgaattt gtttctttct tttggctatt tttgcttgta
      841 gaaattctct cagtctgtct gagtctgaat tgatagtcac aaggaaaatt aggataggaa
      901 gataataagg atcatttcaa tcttttacta gatctatttt actctgattc caatacttct
      961 tgcactcgtt ttaacaaatc ctcgtttgca ataggttttc ggataaagca attcagatca
     1021 aattcaggga atgcctcttt tgcgaattct cttaaaaaga tttcacttcc tgttgtcata
     1081 aaacatattt tgacattgct atccaatttc ttcaatctat tatatagttc aaaaccgttc
     1141 atctttggca ttagaatatc aataatgact aggtgataaa aatcaggcct gaattctcgg
     1201 agagcatcga cgggatcgtt aaacgactcc actctgagtc tcctatctga ttcacttagg
     1261 actatcttaa atgtcaggtt aacatcgtcg ctagcatcta ctatcataat cctcttaatt
     1321 gcggcatcag ggaattttct aactagggtt tgcaagtagt gcttatttgc agttgcagtt
     1381 atcatagtac attaatcata ctttactacg tggcggtcta tactaattta tataaaaaat
     1441 ggttatgatt tgtaactact ctctattaga attgatcaaa gccccttttt atattgcatc
     1501 taatctattt tttatgttca ctgaaaaaca gcatctcaag gtagacatag gaagggaagg
     1561 tttactaacg aaaccgcagg agcctcaacc agaggtggta gatatcgaga tgtgttttta
     1621 ttacctagca tcaaaagcga accaaaggta gctccattat cattgatacc cctcaatacg
     1681 cattgaatga gaatatgatc ttaaataaaa cgcttgaatg aatttctttg gcaatagagg
     1741 acaatatatt atcattcata gtttagtctg ggctattttc agttcttcct cttcttttca
     1801 taataagaat gattattgca gtcacaccag tagtccataa tattatagat agaatccaaa
     1861 agatatcatt gtaaccaaag ctcatcttcg tgatattgtt atatcctatt tctattcgat
     1921 tactattaat gtcatagttg atctaactct atctattgct cttatgtccc tagttatagt
     1981 atctttcaaa ctatcaagac tagcagacgc tattttaaca actatatcat aaacgccatt
     2041 tacttcgcta gcttctatta cacccggaac agttttcagt ttgtttagga tatccttttc
     2101 agctccgatt tcatagttga tgagaacata tgctgttggc ataattcatc gaactatatt
     2161 ccttgtaacg actgtcagcg taccgtcagc ataccccttg gtttactggt ttagaatggc
     2221 caggttcaat gtgttcaaat ctccgatgag aatctaatgt ttcatcacta tcaaatggtt
     2281 tgtcacacaa gctgcaccgg tattgtttgc ttttgcttgg tctatttctt gatgagtatg
     2341 aaggtaaagc aacagtttct ggcatgtcac tataatacgt agacaaggta tgtaagaata
     2401 tctaatagcc caaaagtg
//
LOCUS       DASPFX010000049         2217 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_768791, whole genome shotgun sequence.
ACCESSION   DASPFX010000049 DASPFX010000000
VERSION     DASPFX010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_768791"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VD694_01050"
     CDS             complement(<1..455)
                     /locus_tag="VD694_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11316.1"
                     /translation="MEHQRDSDQSYLCIPHHANLDMALEKWKSSQRPKRMYFVTATFT
                     EETRLYFPGRANHYILISNLGQQDKANTTEIISSHERHVFEFKITTTLFERLCERLNY
                     VSIYFMRYSYGQKELIDLATSLAKRDRVTKATLAEMTVSCSMKPKFSFP"
     gene            complement(572..1453)
                     /locus_tag="VD694_01055"
     CDS             complement(572..1453)
                     /locus_tag="VD694_01055"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HXW11317.1"
                     /translation="MLRITIGIPSYNEGARILSLIRTVFESVLIDEVQISEVIICDHS
                     SDATPKILGSFVSQHPYLPIHLSHHDERGGAASAWNEIFSLATGDIIVLFDADVLPHK
                     ECVSELVSCMEGNRVGLCASNPICLKSGSSTARAASFISSWLEVIRSRGISQYTVMGR
                     SLSVRTDLAKRIIIPKETIAIDLYLQCRILEMGYHILYREKARVYFIPPSNMRDFTSQ
                     VLRSRNGHRQISTQVRRLEINASLWPILIASVKTACDDPIGATFMLICSCLLPFYGWR
                     LPGTNSYKWTIATSTKA"
     gene            1657..>2217
                     /locus_tag="VD694_01060"
     CDS             1657..>2217
                     /locus_tag="VD694_01060"
                     /inference="COORDINATES: protein motif:HMM:NF012702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HXW11318.1"
                     /translation="MSLTVSDLIIPILVYPRRLKHLIFDIRKRGQILASSDDEISSLV
                     NDLIRYGITDVLLFGLPFKRDQNGSSAADKFGAVQVATKEIKREIGSAVNVITDVCVC
                     QYNLSGHCGIWNKNSDNVDNLKSLSLLNKIANSHAESGADCVAPSSMMDGQVYSIRKS
                     LDSGGFGAVKIMSYSAKHASSLYGPFR"
BASE COUNT          641 a          444 c          465 g          667 t
ORIGIN      
        1 tagggaaaac taaacttggg tttcattgaa caggacactg tcatttctgc gagtgtggcc
       61 tttgttactc tatctctctt agccagcgaa gtggccaagt cgatcaattc tttctgccca
      121 tacgagtacc tcatgaaata aatggaaaca tagttaagtc gctcgcatag tctttcgaag
      181 agagtagtag ttatcttgaa ctcaaagaca tgtcgctcat ggctggaaat tatttctgtt
      241 gtgttcgcct tgtcttgctg acctagattc gagattaaga tatagtggtt agctctgccg
      301 ggaaaatata gcctagtttc ttcagtaaac gttgcagtca caaagtacat cctcttgggt
      361 ctctgggaac tcttccactt ttcaagagcc atatcaagat tcgcatgatg tggaatacat
      421 aggtagctct gatcactatc tcgctggtgc tccaacccag aggattttta ttatggaaag
      481 tatttatgtg ctacgaaatt ttgttacttt gttttagaac cttaaataga ggatgataaa
      541 cctcaggaaa acgtctgttt aatcatagag tttaggcttt tgtggaggta gcaatcgtcc
      601 atttgtacga attagtccca gggagtctcc aaccatagaa aggaagaaga catgaacaaa
      661 taagcatgaa agttgcacca ataggatcgt cacaagcagt ctttacagac gcaatcaaaa
      721 ttggccagag cgaagcattg atttcgagcc ttcttacctg agtagaaatt tgtctatggc
      781 cattcctcga cctcaagacc tgggaggtga agtccctcat attagatggg ggtatgaagt
      841 ataccctagc tttttctcta taaagtatgt gataccccat ttctagaatt ctacactgca
      901 gatacaggtc gattgctatc gtttctttag gaatgatgat cctctttgcc aagtcagtgc
      961 gtacagaaag cgatcttccc ataacggtgt attgggatat tccacgactt ctgataactt
     1021 ctaaccaact tgagatgaat gaagcagctc tagcagttga cgaacctgat ttgaggcaaa
     1081 taggattaga cgcgcacaat cctactctat tgccctccat acatgacaca agttcactta
     1141 cacactcttt atgaggcaaa acatcggcgt cgaatagcac aatgatatca cctgtagcca
     1201 gagaaaaaat ttcattccaa gccgaagcag cacctcctct ttcgtcatga tggctcaaat
     1261 gaatcggtag gtaagggtgt tgagacacaa atgatcctaa tatcttaggt gtcgcgtcgg
     1321 aagaatggtc gcaaataata acctcactaa tctggacttc atcaataagc acactttcaa
     1381 atactgttct gattaacgat aagattctag ctccttcatt ataggatggg attcctattg
     1441 ttattctcaa catgatccct tcgaagggca atgaggtatt ggctatttaa cattttgcat
     1501 gtagaaatga taggttttcg aattaaattc attcgcgtta gcgccttcaa atactgccct
     1561 gcaatttttt tctcgaccct ataaacgtga ctttcgccct gctcagacct taagatgata
     1621 tgatattata gcgggaagct gaaattctgt agctaagtgt ccttaacggt ctcagaccta
     1681 atcataccta ttctagtata tccgaggaga ctgaaacatc ttatttttga tattcggaaa
     1741 cgtggtcaga tcctggcatc ttcggatgac gagatcagtt cacttgtgaa tgatcttatt
     1801 agatatggaa tcacggatgt ccttttattt ggactgcctt ttaaaagaga tcaaaacgga
     1861 agttccgcgg ctgacaaatt tggcgcagtt caggtagcaa caaaagagat taaacgggag
     1921 attggatctg ctgttaatgt aattactgat gtctgtgtat gtcagtataa tctctcagga
     1981 cactgtggga tatggaacaa aaattctgat aacgttgata atcttaaatc gctttcccta
     2041 ctcaacaaga tagcaaatag tcatgcagaa agtggtgccg attgcgttgc gccgtcttcc
     2101 atgatggatg ggcaggtata ttcgattagg aagtctcttg attctggtgg gtttggagcc
     2161 gtgaaaataa tgtcctactc agcaaaacat gcatcctcat tgtatggtcc atttaga
//
LOCUS       DASPFX010000050         3190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_908755, whole genome shotgun sequence.
ACCESSION   DASPFX010000050 DASPFX010000000
VERSION     DASPFX010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908755"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..195
                     /locus_tag="VD694_01065"
     CDS             <1..195
                     /locus_tag="VD694_01065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11319.1"
                     /translation="KVTYSLIDSYHSLCHDKKDLILGQIEACQRLVKCTAQEGGRDEV
                     DRQAILNEIDELKLVLDLIQ"
     gene            406..582
                     /locus_tag="VD694_01070"
     CDS             406..582
                     /locus_tag="VD694_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11320.1"
                     /translation="MLKCKNCGEVFAGVYKPENSIKDSKLKTDSTTSHVCSRGHKNDY
                     VPDDFMDWSGPETF"
     gene            630..1643
                     /gene="hflX"
                     /locus_tag="VD694_01075"
     CDS             630..1643
                     /gene="hflX"
                     /locus_tag="VD694_01075"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HXW11321.1"
                     /translation="MQEGKGLVESLGNVNIVKSFTQKNLKHTKYSLGSGKVEEIKQFL
                     EHTKSDQIIVDEHMTSKQIFNLEKTTGIKVVDRERLILDLFYIRSTTNEAKLQIQLAE
                     IKYELPRIKEKSKLLIGDERPGKGGSGEYIVDVKFRDLKRRMGFIIEKLAESKRKREL
                     YHNQRIENKMPIVSLVGYTSSGKTTLFNLLTMESRTTSENLFTTLSTTTRSFIINGQK
                     ILLSDTVGFIRRLPTYMIEAFKSTLEESLQADIILLLIDSSDPVDKIKIKYYSCMNVL
                     QELNVNKEKIVVVFSKIDKAELDDVSRTFEELEIEHPIIVSPKSGYGISKLRKLISQK
                     IVS"
     gene            complement(1821..2123)
                     /locus_tag="VD694_01080"
     CDS             complement(1821..2123)
                     /locus_tag="VD694_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11322.1"
                     /translation="MEQTIVRFVKGLSDDASRWEIRLNNKYGKIGKVIKRIDYDVKHG
                     VTNEQVFSFLQLVQTDSIYFEVMACEGSTERLNELQAYYKETSPQLSFNWNIALSR"
     gene            complement(2614..2811)
                     /locus_tag="VD694_01085"
     CDS             complement(2614..2811)
                     /locus_tag="VD694_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11323.1"
                     /translation="MAFEDEHIIRCSECGRNLIVKDNVNNGIAFLSHLKLDHGITYVP
                     QRMTKAKTKVAGQQQLQKMDS"
     gene            2983..>3190
                     /locus_tag="VD694_01090"
     CDS             2983..>3190
                     /locus_tag="VD694_01090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11324.1"
                     /translation="MSSIEQLRQIVQNLVESFNDTKVRESAYFDFYDDTLNIHGFPQV
                     NGMTEFSFRNGKIIERWNLVDMVSL"
BASE COUNT         1072 a          520 c          567 g         1031 t
ORIGIN      
        1 aaagtaacgt attcattgat tgatagctac cacagtctat gtcatgataa gaaggatctg
       61 atattaggac agattgaagc atgtcaaagg ttggtaaagt gcacagcaca ggaaggcggt
      121 agagatgagg tagatagaca agctatactg aacgaaatag atgaattgaa attggtctta
      181 gatctaatcc agtaagttat catattgttg ttactaacgc agagcattta aatctagtaa
      241 gattcattat accatttctt ggttttagta ttattagcta aatgctaact aggatatact
      301 atggctgatg actagagacg gttagtttta tttacttgaa atcataggta gattttaata
      361 gcatggtgtt gtatatgagt tagtttaatc cacatgccta tgctgatgtt aaaatgcaag
      421 aactgcggtg aagtgtttgc cggtgtctac aagcctgaaa attcgataaa agattccaaa
      481 ttaaagactg attctactac ctcgcacgtg tgctcaaggg ggcacaaaaa tgattacgta
      541 cctgatgatt ttatggactg gtcaggacct gagacattct gaatacaaga caaaatgtta
      601 tacttgtaac acatcctgat gatttcagta tacaggaagg caagggcctt gtagaatcat
      661 tgggtaatgt taatattgta aaatccttta cccaaaagaa cctaaagcac acgaaataca
      721 gtctgggttc tggcaaggta gaggaaatta aacaatttct tgaacataca aaatctgatc
      781 aaattattgt tgatgaacat atgacatcta agcagatctt taatttagaa aagacaactg
      841 gtataaaggt agtagaccga gaaagactaa ttctcgactt gttttacatt agatctacaa
      901 ctaatgaagc aaaattacag attcagttgg cagaaattaa atacgaatta ccgcgtataa
      961 aagaaaaatc caagcttttg attggtgacg aaagaccggg aaaaggtggc agtggagagt
     1021 atatcgttga tgtcaaattc agggatctaa agaggagaat gggatttatt attgaaaagt
     1081 tggcagaatc taagagaaaa cgtgaacttt accataatca gagaatagag aacaagatgc
     1141 caatagtttc cttggtgggg tacacaagtt caggtaaaac taccctcttc aatttgttaa
     1201 ctatggaaag tagaacaaca tctgagaatt tatttacaac cctctcaact acgacaagat
     1261 cctttattat caatggacag aaaattttgc taagtgacac agttggattc attagacgac
     1321 ttcccactta tatgattgag gcgttcaagt cgactctgga agagtcgctt caggcagaca
     1381 tcattcttct tcttattgat tcatcagatc cggtggataa aataaaaata aagtattaca
     1441 gctgcatgaa cgtcttacaa gagttgaatg taaacaaaga aaaaattgta gttgtttttt
     1501 caaaaataga caaagccgaa ttggatgatg ttagtaggac ttttgaagag ttagagatag
     1561 agcatccaat aattgtatca cccaagtctg gctatggaat aagtaaactt agaaaattga
     1621 tatcacaaaa aattgtatca taaattgaaa agatactgaa tcaatatcgt tttagcgtaa
     1681 ttgattatct gtatatcttg caatttatga tatcctggct ttctaatagg tgaataaaaa
     1741 agtttgattc ggtaaaaatt aattgttttc tactttcaga caagctattc caggcaattt
     1801 tttattacat cttttaacta ttatcgggaa agagcgatgt tccagttaaa agataattgt
     1861 ggagatgttt ctttataata cgcctgtaat tcattcaacc tttccgttga accttcgcaa
     1921 gccataactt caaagtaaat agaatctgtt tgtactagtt gcaaaaatga aaagacttgc
     1981 tcatttgtaa caccgtgctt tacgtcatag tcgattctct tgattacttt acctattttc
     2041 ccatacttat tattcaatct tatctcccat cgcgacgcgt catcagacaa tcctttcaca
     2101 aatctaacaa tggtttgctc catatgttta acatgccatt cccgcatagg gaaattattt
     2161 tgtttcaata gaactcatat aatatactct gttgccctat ataacatagc gtattgactc
     2221 gtgcaaattt aaaatcaaaa tcaatctttg tctcaaaatt cacaattcga accattattt
     2281 ccgaaatatt actaatgcac aagaatgaat ttggtactag ctctgaagtt aaatgatcat
     2341 aatgtttcat tattactgag catctaacat cctatagaat caatccatct cgatattgag
     2401 gaaaccgacc ataaacgttt tatacctatt tctgtttaat tgagttaacg ttggtgggtt
     2461 gagatccctc ttttcccatc aatgttttga ttagttctaa ctactagaat catagaaaat
     2521 atggacactt gaattctaca tctaaggaag atttcgaaat tcttggtaat gttcaatttg
     2581 tgtctgttga taagtaacgt ctctatagtg gaattaagaa tccatttttt gtaattgttg
     2641 ttgtccggca accttggtct ttgccttagt catgcgttgg ggcacgtagg taataccatg
     2701 atccaacttt aggtggctca gaaaagcaat cccgttattt acattgtctt taactatcaa
     2761 gttccttccg cattcgctac accgaattat gtgctcatct tcaaatgcca tgtactatct
     2821 tgtattacaa cctattataa ttaagctatc tttttgctca caattacttt taatatcatt
     2881 gatggcgatc tagcaccaag cttagagttt aatgcatatt tattcgaatt ctgattaaac
     2941 cttcaagaaa agttattaaa aaagtcgtta tatttgtcaa tagtgtcatc aatcgaacaa
     3001 ttacggcaaa ttgtacaaaa tcttgtagaa tcattcaacg acaccaaggt tagagaatca
     3061 gcatattttg atttttatga tgatacatta aatattcatg gttttcctca agtcaatggc
     3121 atgacagaat tttcctttcg taatggaaaa atcatagaac gttggaacct ggtggatatg
     3181 gtttcattga
//
LOCUS       DASPFX010000051         3105 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1765268, whole genome shotgun sequence.
ACCESSION   DASPFX010000051 DASPFX010000000
VERSION     DASPFX010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3105
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1765268"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VD694_01095"
     CDS             complement(<1..398)
                     /locus_tag="VD694_01095"
                     /inference="COORDINATES: protein motif:HMM:NF015909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11325.1"
                     /translation="MSAFGIQVNDIINRLMVAEGKRINLQKLNPDYDSSINEKKAEFV
                     LEQNLKKRMSDLQYRLYAERKKALLIVFQGIDASGKDSTIRHVISAFNPQSCTVKAFK
                     EPTEEELSHDFLWRIHKSVPARGEIVVFNRS"
     gene            complement(588..827)
                     /locus_tag="VD694_01100"
     CDS             complement(588..827)
                     /locus_tag="VD694_01100"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11326.1"
                     /translation="MCEVILRSALMREESRGAHFRSDFPNRDDKKWMANIYSSKRKKR
                     GEEMVLSKKRVKEIKGPLRDLIKHTQDQPEHHLLE"
     gene            926..1435
                     /locus_tag="VD694_01105"
     CDS             926..1435
                     /locus_tag="VD694_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11327.1"
                     /translation="MIKVAMILLVLFFATPVATILIIDQGFNNFLPGTTFAQSSENVT
                     SPLNKTQEWISQKDDVKILFTYQPERPIIDTFTKLKFSVINLTNNENLEDFDARVVVT
                     NGQRLFKFENISVPNGNFSVEYLFPDDGTHQIITRVDKDATVQVLASFSVLVPHQAPP
                     SLLNACKKR"
     gene            complement(1442..2653)
                     /locus_tag="VD694_01110"
     CDS             complement(1442..2653)
                     /locus_tag="VD694_01110"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HXW11328.1"
                     /translation="MEYNNSRRMGIICSSTCMTMSIILIMIAAVGMTPPAVYAIEDIR
                     AGDTQGLLKFVSTTTTTMPSNTSSSLDGGGADATSNATSTQIPESARGPAIPEKGHLV
                     EEIGDNLYWVTDGSYNAMFLVTDEGVVAVDAPPSIGQNYLKAIAEVTDKPITHVIYSH
                     AHLDHIGAAGIFPKNATYIAHQATGSELQLAKSLASNTSAIPPVPTVTFPENYTLQVG
                     NQTLELNYYGDNHMPGNLFIYAPNQKALMLVDVVFPGWVPFLYLAIADNVTGFIKAHD
                     IALNNYDFDTFVGGHLTRLGTRDDVVTQQEFVSDLEKAASKANSEVQFGDIAAQVGNT
                     EDIWLLYSNYVDAVDQNCVQTMLPKWESRLGGAEALMPTHCYAMTQAGRVDPSVSAIL
                     QNSTMSGTAVN"
     gene            2857..>3105
                     /locus_tag="VD694_01115"
     CDS             2857..>3105
                     /locus_tag="VD694_01115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11329.1"
                     /translation="MRKHQLIELRKIIERIGSLTEEVEIATNVKLNPLYIADRKDEIE
                     FVRWTAIIIDSILNRDKEYKQVQLGTIKTRLLLADCIEF"
BASE COUNT          916 a          645 c          580 g          964 t
ORIGIN      
        1 gaacgattga acacaactat ctctcccctt gcagggacac tcttatgaat gcgccaaaga
       61 aaatcgtgtg ataactcttc ctcggttggt tctttgaaag ctttcacagt acagctttgt
      121 gggttgaatg cactgataac atgtcttatt gtactatcct ttccagaagc gtcaataccc
      181 tgaaagacga tcaacaaggc tttttttctt tctgcataca gcctgtactg caaatcagac
      241 attcgtttct tgagattctg ttctagtaca aattcagctt ttttctcgtt gatactagaa
      301 tcataatctg gattcaattt ttgtaggttt attcttttac cctcagctac catgagccta
      361 ttgattatat cattaacctg tatcccgaag gcagacatca atgttagctt ttctatattt
      421 tatgggtata atttataggt cacacatcat ctttgaggtt actgaatgcc tgaccccttg
      481 tgggtatagt tggccctgct atgcaggaat gcagttttgt ctttggtgta tagatgagaa
      541 agatatctgg tacgcatgat aattccttca aaaccaaata attatcatca ttcaagaagg
      601 tggtgttcgg gttggtcctg agtgtgttta atcaagtctc ttagtgggcc ctttatttct
      661 ttaactctct ttttagacag aaccatttct tctcctcttt tctttctttt actagaatag
      721 atgtttgcca tccatttttt atcgtctctg ttaggaaaat cggacctgaa atgagctcct
      781 ctactctctt cacgcatcaa cgcacttctt agtatcacct cacacacaac caaggctaga
      841 cttaaaaatc caggagagat atgccactta gcagtatata tacaagtttt tattgccgca
      901 attttgtaaa tgaaaggata aaggcttgat caaagtggcc atgattttgc tagtgttatt
      961 ttttgctacg ccagttgcca ctattctaat aatagatcag ggttttaaca attttttacc
     1021 tggtacgacc tttgctcagt cgtcagaaaa tgtgacatca ccacttaata aaactcagga
     1081 atggataagc caaaaggacg acgtgaaaat cctctttact tatcaaccag aaagacctat
     1141 tattgacaca tttacgaaac taaaattcag tgttatcaat ctaacgaaca atgaaaatct
     1201 tgaggatttt gatgcaaggg tagttgtaac aaacggtcaa agattgttca aatttgagaa
     1261 cattagtgtg cctaatggaa atttttcagt tgaatacctc ttccccgacg atggtactca
     1321 tcagataata actagagtag acaaagacgc tactgtacaa gttcttgcat catttagcgt
     1381 attagtacct catcaagctc ccccaagcct cctaaatgcc tgtaagaaac gatagatttc
     1441 tctaatttac agcagtacca gacatggtac tattttgaag tattgcactt acacttggat
     1501 cgactcttcc agcttgggtc atggcgtaac aatgagtagg cattaacgct tccgcacctc
     1561 caagtctact ctcccatttt ggtaacatgg tctgtacgca attctggtct acggcatcga
     1621 cataattaga gtaaagtagc caaatgtctt ctgtattgcc tacttgtgcg gcgatatcac
     1681 caaattgaac ttcgctgtta gccttagagg cagctttttc cagatcagaa acaaattctt
     1741 gctgtgtcac tacatcatct cttgttccca atctagtcag atgcccgccc acaaaagtat
     1801 caaaatcata attgttcagt gctatatcat gagcttttat aaaacctgta acattatcgg
     1861 ctattgccaa gtacaaaaat ggtacccagc ctggaaacac cacatcgact agcataagag
     1921 ccttttgatt tggagcatag ataaagagat ttccaggcat atgattatcg ccataataat
     1981 tcaactctag cgtttgattt ccaacttgca atgtataatt ttctggaaag gttacggttg
     2041 gtaccggtgg aattgcagaa gtgttactag ctaaactctt cgccagctgt agttctgatc
     2101 cagtggcttg gtgagctata taggttgcat tctttggaaa tattccagca gcaccaatat
     2161 gatctaaatg agcatgactg tagattacat gtgtgatcgg cttgtcagtt acttcagcta
     2221 tggccttcaa gtaattttga ccaatagatg gaggagcatc aactgccact acgccttcat
     2281 cagttaccaa aaacattgca ttgtaagagc cgtctgtgac ccaatacaag ttatcgccga
     2341 tctcttcaac caaatgacct ttttcaggta ttgcggggcc tcttgcggat tcggggatct
     2401 gtgtagatgt ggcattagaa gtagcatccg ccccgccacc atcaagagaa ctagaagtat
     2461 tagacggcat cgttgtagta gtagtcgaaa caaatttcaa aagaccttgg gtatccccag
     2521 ctcttatatc ctctattgca taaacagctg ggggtgtcat gcctacagcc gctatcatta
     2581 tcaaaatgat agacatggtc atacatgtcg atgagcaaat aattcccatt cgtcttgaat
     2641 tgttatattc catgatttag tcggtatagc gacttgtata aaaatatagt cattgtattc
     2701 attggcctta tagcattggt tgaagagttc tggcctagac ccgccttaag aagttggtct
     2761 acgtaatgcg gataattcat tcacatgtta taacccactc tcccggtgcc agccgtaatc
     2821 cactgattat atcgccaatc gacaagtaat tgagtcatgc gcaaacatca attaatagaa
     2881 ctcagaaaaa taatcgaaag aattgggtca ctcaccgaag aagttgagat cgcgactaat
     2941 gtgaaattga atccactata tatagccgac cgtaaagacg aaattgagtt tgtacgttgg
     3001 acagcaataa taatcgattc aatcttaaat cgcgataagg agtataaaca agtacaacta
     3061 ggaacaatca aaacgaggtt actactagct gattgcatag aattt
//
LOCUS       DASPFX010000052         5245 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1367400, whole genome shotgun sequence.
ACCESSION   DASPFX010000052 DASPFX010000000
VERSION     DASPFX010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5245
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1367400"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            502..891
                     /locus_tag="VD694_01120"
     CDS             502..891
                     /locus_tag="VD694_01120"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HXW11330.1"
                     /translation="MSKSGSTDSSIVSHIVYRIPKKNHDAMLQICKEAYDMFKQHGIL
                     HYDAFKLSNTDVPMEGFANISSIVSANQDEEVWIESIYYRDRQHMNEVMTKMEKDERT
                     GQMMKQSMDLLPQGAKFIVGDFERLNV"
     gene            complement(1506..1679)
                     /locus_tag="VD694_01125"
     CDS             complement(1506..1679)
                     /locus_tag="VD694_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11331.1"
                     /translation="MSEEGESINENINLSSEKEAASEALENESEIKEPLEGQGEQLQA
                     AAIEQPLTSQLEV"
     gene            1860..2039
                     /locus_tag="VD694_01130"
     CDS             1860..2039
                     /locus_tag="VD694_01130"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HXW11332.1"
                     /translation="MKTITCRDAGFDCDYIVKGETEEEVMKRGAEHAMKDHGMKEEDI
                     TPEFKEKVRGLIRTS"
     gene            complement(2340..2918)
                     /locus_tag="VD694_01135"
     CDS             complement(2340..2918)
                     /locus_tag="VD694_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HXW11333.1"
                     /translation="MVHVFKALQLVKSRGHISRDLLSKELGLGEGSIRTLMRHLQMNN
                     MIKATNAGTTMTQKGEALLLELLSSIPTEMNLPKCSIALGKFNYVVLLKQHSHAIKSG
                     VEQRDAAIRIGAKGATTLLFKQNKFVMPSNTNYDSLQKEPKISKLLIRMLNPEEGDAI
                     IIGSDDMHKKRSEFAAKSAALLTIMNHEKHSD"
     gene            3125..3340
                     /locus_tag="VD694_01140"
     CDS             3125..3340
                     /locus_tag="VD694_01140"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HXW11334.1"
                     /translation="MSSRILLTRDMDVSPRIAVGILLGILIMGIFVVGYDQGHLFSFV
                     QGQEAFDTKWMHEFYHDMRHAAGFPCH"
     gene            3395..4141
                     /locus_tag="VD694_01145"
     CDS             3395..4141
                     /locus_tag="VD694_01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HXW11335.1"
                     /translation="MKAITFVIITLLSGAIAGTILGIINQALVEPYIDRAITIETQNT
                     IKEGEVVNPVDLQNYRLWQKGGEIVAGTILGISFGALFGIVFIYGINLLLPHSKSNIR
                     KALVLAGIMWFVLFLIPALKYPANPPAVGDTQTIYYRESLYVGLLAISGFSALGLAFL
                     YRKLSLAATSNNKNRIIVVPLIYAAIIVGTFLILPPNPDEINAPTDLVQGFRISSAFT
                     MSVFWGLLGIILGVLWDRLKPHQTTRITAI"
     gene            complement(4305..4733)
                     /locus_tag="VD694_01150"
     CDS             complement(4305..4733)
                     /locus_tag="VD694_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HXW11336.1"
                     /translation="METINKGKEKGLPVLNKNVDCNFEGYDASLLMSETAKLRNLITK
                     RGTLEILIPLCCTTNPVRHKQFRQTLKGFSTRTLSIRLKELEKSGILEKHRYNEIPPR
                     VEYTLTAKGQELVESVISILQWMRKWAKVGHSNSNPITTT"
     gene            4821..>5245
                     /locus_tag="VD694_01155"
     CDS             4821..>5245
                     /locus_tag="VD694_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HXW11337.1"
                     /translation="MQEQPIKQKIKERYGKIALTGTETCCAPTIDFKNNASGSSCCSP
                     TDSATVIGYESNELESIPKASVLGVGCGAPLHHAAAKEGETVVDLGSGAGIDVFLSAN
                     KVGRSGKVIGIDLTDEMLEKARRNAKENGYTNVEFRKGD"
BASE COUNT         1578 a          878 c          960 g         1829 t
ORIGIN      
        1 cagagtagta gaagagatag caggtgaacc cataaaacta tatccgaact acgaaagtga
       61 tttcttgatg atgaaagtca tactgtgatt attgttacac gatggttgag aatagtctat
      121 gagtgaatgg tcacttaatg acagagaatt ggatctatac gtagactcgt ataaacgata
      181 actggaaagt catctaaaca agtaacaaaa catagaatag tagaatagga tctacattat
      241 atcttatctt gatttggaaa atgctagagt aactccacgt attggatcat aactaaagtt
      301 gtaaatttcg ttctgtgaaa ttggcgtaga ccgatttggt tactcttaca cgaataacat
      361 tcggtaatta tgttaaatgt gtcgcaggag taaactaata atggcacaga ttgtaaattc
      421 acttacaagc taatgcgtgt gttgttgcta tacttttgat cccttatccg tatttatata
      481 ggtacaaatt atctattgtt catgagcaaa tctggttcga ctgattcaag tattgtctca
      541 cacattgtat acagaattcc caaaaagaat catgacgcga tgttacaaat ctgcaaagaa
      601 gcctacgata tgttcaagca gcacggaatt ctgcactatg acgctttcaa gcttagcaat
      661 accgatgtgc caatggaagg atttgcaaat atctccagta tcgtttctgc caatcaagat
      721 gaggaagtgt ggattgagtc aatttattat agagatcgcc agcacatgaa tgaagtaatg
      781 acaaagatgg aaaaggatga aagaactggc caaatgatga aacaatcaat ggatttactg
      841 cctcagggag ctaagttcat agtcggggat tttgaacgtc taaatgtcta acataggttt
      901 tatgaaagtg tatccgtcat cactgaaaaa tccgcagaag acttaacgaa tgtgcagatc
      961 agagttctct caagtcttct tacatgaatt ctgtgtataa atcagcccta ctaagtatca
     1021 atactcacta acaataactt ctcattagat aatatatctt tatggatatt atcccccaaa
     1081 ggggagacaa aagcatacta gaagatagaa ccaggcttca tcacaccttc cccgttttga
     1141 ttcctctatt accttttctc tgatatatgg gccctcaata ttatgagtat tattttaatc
     1201 atcacttatt tttcttctta tttcgggata tttgtttacc tgattgtaat ttgctagtag
     1261 atcttttttg aacactttta taaagtagag atatccgttt ttgaatctgg tttacctggg
     1321 aacgtatttg attaactgtt cctgtttgtc tatcaccttg ctcttatttg tttctgcaga
     1381 gactgtagat tttgatttat cttgttaatc tgagttcttt gttttacaat ttgattcgaa
     1441 gtatcggcca aggatttctg gatcttattt atagttgctt ttgatttctg tctttttggt
     1501 tttgcttaga cttctaattg tgatgttaat ggttgttcaa ttgcagctgc ttgtaattgt
     1561 tcgccttgtc cttctaatgg ctcttttatt tcactctcat tctctaacgc ttctgatgct
     1621 gcttcttttt cgctagataa attaatgttt tcattaatac tttccccttc ctctgacatt
     1681 aattgctaat tatgttgcat tgataataaa ttttcctcat agataggttc tatttaatat
     1741 agtcgaaagg atgatttaca tcatataaga cctaattttc tgaatctacg tagatttttt
     1801 ctattgattt atttctaata aatgaatgct taaaagatac agcggtgtaa ggctcatata
     1861 tgaaaacaat tacatgtcgc gatgcaggat ttgactgtga ctatattgta aaaggtgaga
     1921 cagaggagga ggttatgaaa cgcggtgctg aacatgccat gaaagatcat ggtatgaaag
     1981 aagaagatat cactccagaa ttcaaagaaa aagtaagagg acttattcgc acttcttaac
     2041 cttcatttat tataactggt attccctgct attatggaag acgctcttct tagcactctg
     2101 actagtatct gttaactgag atttttggtt cgtggtcatg aattgcggtt tgtacaaata
     2161 tttgtttctt attttatagc cgaagtatga ttcaacgcat tttagcttta gttccagaat
     2221 tatatgctaa aatgactctt ggattaccca atattattac atatattatg gaattttttc
     2281 cctcgtttca tcatagcgtt tcatcatagg tatttttccc caaatactag cgattatatc
     2341 taatcactat gtttttcatg attcattata gtaaggagag cagcactttt tgcagcaaac
     2401 tctgaccttt ttttatgcat atcatcactt cctatgatta ttgcatctcc ttcctccgga
     2461 ttcagcatcc taattaataa tttggatatt tttggttcct tttgcaatga atcataattt
     2521 gtattggaag gcatcacaaa cttgttttgt ttaaacaaca atgttgtagc cccttttgca
     2581 cctattctta ttgcagcatc tctctgttca acacctgatt ttattgcatg gctgtgttgc
     2641 ttcaacaata ccacataatt gaatttacct aacgcaatag aacactttgg aaggttcatt
     2701 tctgttggga tagaggaaag caattctaag agtaatgctt cacccttttg tgtcattgtt
     2761 gttccagcat tagtagcttt tatcatattg ttcatttgca aatgtctcat aagggtcctg
     2821 atagaacctt caccaagccc taattccttg gataaaaggt ctctactaat atgacccctg
     2881 ctttttacga gttgcaatgc cttgaagaca tgcaccatat taaatgaaat aactctactt
     2941 ggagcataat tattacaaat tttttgaagg ctcctaatgt aggtgtgcat gttgtttata
     3001 ttactataaa gaaaatgaga tttaattgtg tcgtttgctc actttatagc aataaaatgt
     3061 agatggttgg ataaaccagc ccagacttta tatatcagtg ttctctctat gaactggaat
     3121 caaaatgtct tcacgaattc ttctcaccag agatatggat gtgtctccca gaatagctgt
     3181 gggcatactt ctagggattc taataatggg aatttttgta gtaggatatg atcagggaca
     3241 tcttttcagt tttgttcagg gtcaagaggc ttttgataca aaatggatgc atgaatttta
     3301 tcatgatatg agacacgcag ccggattccc atgtcactag attagattga taattgcatg
     3361 attttattct taacaggtgt gacaaaagaa tagtttgaag gcaatcactt ttgtcataat
     3421 aacgctcctg tcaggtgcca ttgcaggcac tattcttggt attattaacc aggctctagt
     3481 tgaaccatac atagatagag ccattaccat agaaactcaa aatacaatca aggaaggtga
     3541 agttgttaat cctgttgatc ttcagaacta tcgtctatgg cagaaaggag gagagatagt
     3601 ggctggaact atattaggta tttcatttgg ggccttattt ggaatagtgt ttatatatgg
     3661 cataaatttg ttattgccac attcaaagag taacataaga aaagccctag ttctagctgg
     3721 tataatgtgg tttgtattat ttttaattcc tgcattaaag tatccggcaa atccgccggc
     3781 tgtaggagat actcagacca tatattacag agagagtcta tatgttggcc ttcttgcaat
     3841 atctggattt agcgctctgg gattggcatt tctatatagg aaacttagtt tagcggcaac
     3901 atcaaacaat aagaatagga ttattgtagt tccactaatt tatgcagcga taatagttgg
     3961 aacctttctt atcctgccac ctaatcctga tgaaataaat gcacccacag atttggttca
     4021 aggattcaga atttcaagtg catttactat gagtgtattt tggggactgc tgggaataat
     4081 tttgggtgta ttatgggata gattaaaacc ccaccaaaca actagaatca ctgcaattta
     4141 gtttgattta tatctaatat agatattgtg agatcaaaca ccatatttct gcaattttat
     4201 tttctgccat ttattttcaa attaatcctt tataaataaa caaacaaact tgtcactacc
     4261 ttgattttct tcttagatat ttttttgtga atagtgaaat tttcttaagt tgtagtaatt
     4321 ggattactat tggagtgccc tactttagcc catttcctca tccactgcag tatgctaata
     4381 actgattcaa caagttcctg tcctttggca gttaatgtat attctacccg aggtggtatt
     4441 tcattatacc tgtgtttttc taatatacca ctcttttcta attctttgag tcgaatcgac
     4501 agagttctag tgctaaaacc cttcaaggtc tgtctgaatt gtttgtgtct tacaggatta
     4561 gtcgtacagc ataaggggat tagtatttca agtgttcctc tctttgttat taagtttctt
     4621 aattttgcag tttcagacat aagcaatgat gcatcatagc cttcgaaatt gcaatctacg
     4681 ttcttattga gaacaggaag tcccttttct ttccctttgt taatagtttc catgtttcat
     4741 ttgttaatag tttccatgtt tgcactaagt gcaatttttt acccttgata acttaaatag
     4801 ttttggttgt aaacaatagt atgcaagaac aacccattaa acaaaaaata aaagaaagat
     4861 atggcaaaat tgcattaaca gggactgaaa catgttgtgc gccaactata gatttcaaaa
     4921 ataacgcatc tggtagtagt tgctgctcac cgactgactc tgctacagtg attggttatg
     4981 agagtaatga attagaatct attcctaagg catcagtttt aggagtgggt tgtggtgctc
     5041 ctttacatca tgcagctgct aaagagggcg aaaccgtcgt agatttgggc tctggagcag
     5101 gaatagatgt atttttgtca gccaataaag ttggaagatc tggtaaagta ataggtatag
     5161 acctgactga tgagatgttg gagaaagcaa gaaggaatgc aaaagaaaac ggttatacaa
     5221 atgtagaatt tagaaaagga gatat
//
LOCUS       DASPFX010000053         4320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1175051, whole genome shotgun sequence.
ACCESSION   DASPFX010000053 DASPFX010000000
VERSION     DASPFX010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4320
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175051"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1203
                     /gene="thrC"
                     /locus_tag="VD694_01160"
     CDS             <1..1203
                     /gene="thrC"
                     /locus_tag="VD694_01160"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HXW11338.1"
                     /translation="CRECGAEYTPIFKYICEECFGPLDVIYDVPANLSKDTFTSRQDK
                     TYWRYFELLPIADKNHIVNIHAGFTPLQHAEELGTHMGDLKNLFIKNDSVNPTFSFKD
                     RPAGVAISKSREIDLKAVGCASTGNLASATAAHAAKAHLPCFIFAPSDIEKVKIAQAL
                     SYGAKFVAVEGTYDDANRIASIIGDSKGIGIVNINMRPYYVEGSKTLAFEVAEQLGWQ
                     VPDHLIIPVGSGAMLNAICKGFEELHEIGLIGDVSNLKVTAAQPHGCAPIVDAFKNKS
                     GEIVPVERPDTIAKSLAIGDPGDGVYVLRRLKQYGGIAEEASDNEIVEGILTLAKTEG
                     IFTEPAGGVAIAVLKKLIDDGFIEQDEKVVCYVTGNGLKSTEAIMSALPKFDVVKPDV
                     QTVSAMIT"
     gene            1221..2567
                     /locus_tag="VD694_01165"
     CDS             1221..2567
                     /locus_tag="VD694_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HXW11339.1"
                     /translation="MATIEFIIPSVLTKGTGEKKIPLDAADLQDAFTKITEQLGEDFK
                     RKVLDLNGKPRSLINIYINGKNMRFSNDGMATKLNSGDSIYILPAVAGGSELENEDLQ
                     RYSRQIMLEEIGFVGLEKLRKAKVCVVGVGGIGNPVVTQLTAMGVGKLKIVDRDIIEI
                     SNLHRQHLYTENDLGKVKVEAAKERLEKINSSVEIEALPNSVTKYTAESIISGYDIVV
                     DALDSIDARYALNDACIKLNIPLIYAGALGMLGSVCTIIPNKTACLRCIFPALAEDDM
                     PTCSTEGVHPSILYLVGGIQVSEVVKIILGEKPTLENKLMYVDLNDLSLEKISVFRQE
                     ECPSCGTKRIDRDQLETKQLIIEELCGRDRGKRTYTVTPSHISSSLNLTGIEKNAERL
                     GYTIKTKGELGLTIMSSNSDNLSISFMSSGAATIVGAKSEDEALSIYRSFVDDIKS"
     gene            complement(2607..3014)
                     /locus_tag="VD694_01170"
     CDS             complement(2607..3014)
                     /locus_tag="VD694_01170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11340.1"
                     /translation="MGIDYEFIYNFSEELLNLDSSLRWIGISNKYGVLINVEQREGLN
                     PLMSEEESEEYAAAAVSRYRTRVKFQSKIGKLNYAVGRYENVTRITVPISNDYFLLLT
                     IDKEKNYDDIINKMIIPFIAKNRNKFHFEDTSD"
     gene            complement(3084..>4320)
                     /gene="tgtA"
                     /locus_tag="VD694_01175"
     CDS             complement(3084..>4320)
                     /gene="tgtA"
                     /locus_tag="VD694_01175"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HXW11341.1"
                     /translation="YIAQFENDIKSDICVPLDKPTGYGLRYDVAERYVSETIRNSQET
                     MNLIKSNNNSNSVWVGPVQGAEHLDLVKSSAGQLDEMGYEMMALGSPVQLLESYEFAI
                     LADMIAALKSKVMSKPVHLFGAGHPLTIPLAVALGCDTFDSASYMLYARDNRYMHANG
                     TSRLDKLSYLSCQCPICTNMTVKEFVDLDYEERTNKLAKHNLYVLREEVLSVKQAIME
                     GRLWEYVGQKARAHPKLMEAFQLFLNYKYLEDGTPLFKKKAIFFMETIDQYRPEASRI
                     RKIFDSFRTNKKKIILFPDTHVSPFYTSHEYHKLYSKFSDYQICAYNPFIGIIPSEIS
                     DIYPAAHNLISKKRFNIHNSEDYPTFVSSFEKFLSHNHFDDVIIIADEFMQGIVHETN
                     IERKNLKIIEYSDDIIEQI"
BASE COUNT         1394 a          734 c          851 g         1341 t
ORIGIN      
        1 tgtagagaat gtggtgctga atatactccc atattcaagt acatatgtga agagtgtttt
       61 ggtcctctcg atgttattta tgatgttcct gcaaatttga gcaaagacac attcacatcc
      121 agacaagata agacatattg gcgttacttt gagctcttac caattgctga taagaatcat
      181 atcgtaaata tacatgctgg gttcacgccc ctgcaacatg ctgaggagct tgggactcat
      241 atgggagatc ttaagaatct gttcataaag aacgattctg taaatccaac tttttcattc
      301 aaagatagac ctgccggtgt ggcaatttca aaatccagag aaatagatct caaggcagtt
      361 ggatgtgcat caactggaaa tttagcttcg gcaacagctg cacatgctgc taaagcccat
      421 ttgccatgtt ttatttttgc accatctgat atcgaaaaag taaagatcgc tcaggcatta
      481 tcttatggtg ctaagtttgt cgcagttgaa ggaacatatg atgatgccaa taggattgca
      541 tcaataatag gtgattcaaa gggcataggg attgttaata ttaatatgag accctactat
      601 gtagaaggtt ctaagacttt ggcatttgaa gtagccgaac aacttggctg gcaagttcca
      661 gatcatttaa tcattccagt tggtagtggt gctatgctaa atgcaatttg taaaggattt
      721 gaggagttac acgaaatagg acttattggc gatgtttcaa atctaaaagt tacagctgca
      781 caaccacatg gctgtgcgcc aatagttgat gcttttaaga ataaaagtgg tgaaattgtt
      841 cctgtagaaa gaccagatac catagcaaag agtttagcaa ttggggatcc tggtgatggc
      901 gtttacgtat tgagaagatt gaaacaatat gggggtattg ctgaagaagc tagcgataac
      961 gaaattgtag aagggatctt gacactagct aaaactgaag gtatttttac tgaacctgca
     1021 ggtggtgtcg ctatcgccgt gttgaagaaa ctgattgatg atggatttat agagcaagat
     1081 gaaaaagtag tatgttatgt tactggtaat ggattaaaat ctaccgaggc aattatgagt
     1141 gcattgccaa aatttgatgt agtcaagcca gatgtacaaa ctgtgtccgc aatgataact
     1201 taggagataa tgaacacaaa atggcaacta ttgaatttat aatcccatct gttcttacga
     1261 agggaactgg agaaaagaag attcctttgg atgccgctga tttgcaagat gcatttacca
     1321 aaataacaga acaactggga gaagatttta aacgcaaagt tttagatttg aatggaaaac
     1381 cacgatcttt gattaatatt tacattaacg gaaaaaatat gcgttttagt aatgatggaa
     1441 tggcgacgaa acttaacagc ggtgattcaa tttatattct tccagcagta gcaggaggtt
     1501 ctgaattaga gaacgaggat ttacaacgat actctagaca gataatgcta gaagaaatag
     1561 gatttgtggg attggaaaaa cttagaaagg caaaagtatg cgttgttgga gttggtggta
     1621 taggcaatcc tgtagttaca caactgactg caatgggtgt tggaaaatta aagatagtag
     1681 acagagatat tattgaaatt tctaacctgc atagacagca tctttataca gaaaacgatc
     1741 taggtaaagt aaaggttgaa gcagcaaaag aaagacttga aaaaatcaat tctagtgtgg
     1801 agatcgaagc tcttcctaat tctgttacca agtatactgc cgaaagcata attagtggat
     1861 atgatattgt tgtagatgcg ttagatagca tagatgcaag atatgcacta aatgatgcgt
     1921 gcattaaact gaatatacct ctcatctatg caggagcctt gggcatgctg ggttccgtct
     1981 gtaccattat tccaaataaa accgcatgtc ttagatgcat ttttcctgca ttagccgagg
     2041 atgatatgcc aacatgtagt actgaaggag ttcatccatc aattttgtat ctggtcggtg
     2101 ggattcaggt ttcagaggta gtcaagataa ttctgggtga aaaaccaaca ctggaaaata
     2161 aactcatgta cgtagatctc aacgatttat ctttagagaa gatttcagta tttagacaag
     2221 aagaatgtcc ttcatgcggg acaaaaagaa ttgatagaga tcaactggaa acaaagcaat
     2281 tgataattga ggagctatgc ggtcgtgacc gaggaaaaag aacgtacact gttacaccat
     2341 cgcatatctc gtcatcatta aaccttacag gaattgagaa gaatgcggaa cgacttggat
     2401 atacaattaa gacgaaagga gaattaggac taactatcat gagcagcaat tctgacaatc
     2461 tttctataag cttcatgtct agtggtgcag ctactattgt tggagcaaag agtgaggacg
     2521 aagctctgtc aatttatagg agctttgtcg atgacattaa atcttaaatt cttaagtgtt
     2581 tagatcaacg agcaccaaat ataggatcaa tcgcttgtat cctcgaaatg aaatttgttc
     2641 ctatttttgg ctataaatgg aattatcatc ttattgataa tgtcatcata gtttttttcc
     2701 ttatcgattg ttagaaggag aaagtagtca ttacttatgg gaactgtaat cctggttaca
     2761 ttttcatatc ttccaacagc gtaatttagt tttccaattt ttgattgaaa tttaaccctt
     2821 gttctgtatc ttgacacagc agctgcagca tattcctcgc tttcctcctc cgacattaat
     2881 ggatttaacc cttcgcgttg ttctacatta attaagacgc catacttgtt tgaaatacct
     2941 atccaacgaa gggaactgtc tagatttaat agttcttcgc taaaattata aatgaactca
     3001 taatcaatcc ccaattttat taactattct atcaatttct catatttaag caaaaaccaa
     3061 aattagaaat aaatcgacga tgactaaatc tgttctatta tatcatcgct atattcaata
     3121 atctttagat tcttacgttc tatgttagtc tcatgaacta ttccctgcat gaattcatca
     3181 gcaataatta taacatcatc aaaatgatta tgtgatagaa atttttcaaa ggaactaaca
     3241 aaagttgggt aatcttcaga attgtgtatg ttaaatctct tcttggaaat aaggttatgt
     3301 gcagcaggat atatgtctga aatttccgac gggatgatac caatgaatgg attataggca
     3361 caaatctgat agtctgaaaa tttgctgtac aatttgtgat actcatgaga ggtataaaat
     3421 ggtgaaacgt gtgtgtcagg aaatagaatt atttttttct tattagtcct aaatgagtca
     3481 aaaatctttc ttattctgga ggcctctggg cgatattgat cgattgtttc cataaaaaat
     3541 atcgcttttt tcttgaataa tggagtacca tcttctaaat acttgtaatt cagaaataat
     3601 tgaaaggcct ccattaattt gggatgggca cgtgcctttt gcccgacata ttcccacaat
     3661 cttccttcca tgatagcttg ttttacagac agtacttctt ctctcaatac atagagatta
     3721 tgcttagcca atttgttagt tctttcttca taatcgagat caacaaattc cttaactgtc
     3781 atattggtgc aaattgggca ttgacatgaa agatatgata gtttatcaag tcttgaagta
     3841 ccatttgcat gcatatacct attatctctt gcatacagca tataggaggc agagtcaaaa
     3901 gtatcacacc ctaacgctac tgccaatggt atcgttaaag gatgtcctgc tccgaagaga
     3961 tgaacaggct tggacattac ctttgattta agagctgcta tcatgtctgc caaaatagca
     4021 aattcatatg attctagcaa ttgcaccgga ctaccaagag ccatcatctc ataacccatt
     4081 tcatccagtt gtccagcgga acttttcacc aagtcgagat gttctgctcc ctgcactgga
     4141 ccaacccata cagagttact attattgtta ctcttgatta gattcatagt ttcttgtgaa
     4201 tttcttattg tttcgctaac atacctttct gctacatcat atctcagacc atatcctgtt
     4261 ggcttgtcaa gaggcacaca gatatcactt ttaatatcat tttcaaattg agcaatatag
//
LOCUS       DASPFX010000054         2780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_905680, whole genome shotgun sequence.
ACCESSION   DASPFX010000054 DASPFX010000000
VERSION     DASPFX010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2780
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_905680"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /locus_tag="VD694_01180"
     CDS             complement(<1..783)
                     /locus_tag="VD694_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11342.1"
                     /translation="MDSVSIALIYAINKGYQVHPDAFAFLKSLDCDVEKIIKTIVDAK
                     NKFKKKTPILIDDIKNALSGDVNPTIDDPVITNMNSNPKSDSNLENYKIIFDPTYKIN
                     SENDKDFVKLFDSRYRKTLKILSSRSESRQIRKIKQIKDLRNKSRSSSLDNDNERGKV
                     VDSVFLAGLVMSKRNRKNDVELVIDDTTGSIPVVCKTRDLIKESSSLVLDQMLMLEIS
                     LSKRNSNDFVIKDIIFPDIPEHVASKSGTESYVALISDLHVGS"
     gene            911..1402
                     /locus_tag="VD694_01185"
     CDS             911..1402
                     /locus_tag="VD694_01185"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HXW11343.1"
                     /translation="MIGILVFIIFFAIGTFITFDESTSQLLKEQFQNKIKNIDSTGIF
                     LNNFLISILMFVPGIGIAFGLFSGFSTGNIFVIITRDLPIQIPPLLVFLTIFGIMELV
                     SYGIAISRSYLLLISILKRTNTKENLIYTGIEIGIVAIILFFSAIIEWDLIKQSGGLN
                     LVE"
     gene            complement(1434..2171)
                     /gene="cbiE"
                     /locus_tag="VD694_01190"
     CDS             complement(1434..2171)
                     /gene="cbiE"
                     /locus_tag="VD694_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6y C5,15-methyltransferase
                     (decarboxylating) subunit CbiE"
                     /protein_id="HXW11344.1"
                     /translation="MTEDRTKDKKLFLVGVGPGSSKYLTDLAKDAIRKSKYLIGYKYT
                     LSIIRDLIIPQFHQVYEVTMKDQDQTYNQVFEKMRENEYCTIPFTGDVNFSESEVVDR
                     LLEIFGNGNVELMPGISSIQVAAAKAKIPLDKARIISFHVTENIEDKKRELVRAIQDK
                     KSVILVPRPWNNNAEKNFMQSEIALFLKKEGVDTSSLIVWVFEFLTTVEEKVFKGKLN
                     ELEGRNFSPMSVMVVDQVTRKTYLEFE"
     gene            complement(2250..2729)
                     /locus_tag="VD694_01195"
     CDS             complement(2250..2729)
                     /locus_tag="VD694_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11345.1"
                     /translation="MLEWNEQIKAHLMWIWGGEDGFMKRKREGMLVVTEKNLIFITKT
                     NMSYRIHEVHSQRQLLRFKENKNVFLPVEGYGITELRNDMEKSDQNIVFPFSQILDMY
                     FLEKRWGSELKIKTNIENKQKNYNFAIVKGWVKYPAKDPLQFHHVDWNPIITLYKMS"
BASE COUNT          847 a          538 c          390 g         1005 t
ORIGIN      
        1 actacccaca tgtaaatcgg aaatgagagc gacataagac tctgttccgg atttggaggc
       61 aacgtgctct ggaatatcag ggaatattat atcctttata acaaaatcat tcgaatttct
      121 tttactgagt gaaatttcta acattaacat ttggtccaaa acaagcgatg aagattcctt
      181 aatcaggtcc cgtgttttgc aaactacagg gatgctaccc gtagtatcat caattacaag
      241 ctctacatca ttttttctat tcctcttcga cattaccaaa cctgcgagaa aaactgaatc
      301 aacaactttt cctcgctcat tgtcattatc cagagaactt gatctagatt tatttcgaag
      361 atccttgatc tgttttattt ttcttatttg cctactttct gaacggcttg acaatatttt
      421 caaagttttt ctgtaacgac tatcgaatag tttaacaaaa tccttatcat tttcagagtt
      481 tatcttgtag gtcggatcga agataatttt gtaattttct agattgctat ccgactttgg
      541 attcgaattc atattagtta ttacggggtc atcaatggtg ggatttacat cccccgataa
      601 tgcgttcttt atatcatcaa tcaagattgg agtttttttc ttaaacttat tcttagcatc
      661 aacaattgtc ttgattattt tttctacatc acaatcaagt gatttgagaa aggcaaaagc
      721 gtcaggatga acttgatatc ctttatttat cgcataaatc aatgcaatag acactgaatc
      781 caagttttat tattaaccag aactattata aatactaaaa atgttttgtt ttgagcatag
      841 gttattaaaa agcaaacacc gtggttgaag catgtacaga tacaacttca aaaggagaat
      901 tctctatctt ttgattggca ttttagtatt cataattttc tttgcaattg gtacattcat
      961 cacttttgac gaatccacat cccaactctt aaaagaacaa tttcaaaaca aaatcaaaaa
     1021 tattgacagt acgggtatat ttctcaataa ctttctgata tcaatcttaa tgtttgttcc
     1081 aggtatcggg attgcatttg gtctcttttc aggatttagt actggtaata ttttcgtgat
     1141 aataacacga gatttaccaa tacagatacc accattactt gtctttttga caatatttgg
     1201 aataatggag ctcgtttcat atggtattgc tatctctaga agttacctgc tattgattag
     1261 tatattaaaa agaactaata ccaaagaaaa tcttatttat acaggcattg aaattggcat
     1321 cgttgcaatt attttatttt ttagtgcaat tattgaatgg gatttaataa aacaatctgg
     1381 cggcctcaat ttagtagaat agcgtaggaa taaaagaaaa cacaaaggga atttcattca
     1441 aattccaagt atgttttacg tgtaacttga tcgacaacca ttacagacat tggactaaaa
     1501 ttccttcctt ccagttcatt cagtttaccc ttaaacacct tttcctccac tgttgtcaga
     1561 aattcaaata cccaaactat caaactagag gtatctacac cctccttctt gagaaataat
     1621 gcaatttctg attgcataaa atttttttca gcgttattat tccacggtct tggcactaga
     1681 attacgctct tcttatcttg aattgctctg actaattctc tcttcttatc ttcaatattt
     1741 tcagtaacat gaaaactaat aatcctggcc ttatccaatg gaatttttgc ttttgcagct
     1801 gcaacttgaa tagaacttat tcctggcatc aactctacat taccattacc aaagatttcc
     1861 aataatctgt caacaacttc cgactctgaa aagttcacat ctccagtgaa aggtattgta
     1921 cagtactcat tttctcgcat tttttcaaac acctgattat aggtttggtc ctgatctttc
     1981 atggttactt catatacctg atgaaactga ggaataatca aatctcgtat tatggataat
     2041 gtatatttgt aacctatcaa atacttcgac tttcttattg catcttttgc tagatctgtc
     2101 aagtattttg atgagcctgg acccacccca acaagaaata acttcttgtc tttcgttcta
     2161 tcttccgtca cagctatacg tattatcctg tgttttttat ttgctttctt tgaatttaat
     2221 atcttctaaa aaccaaaaga cagaatcaat catgacatct tgtacaatgt tattatcgga
     2281 ttccaatcca catgatggaa ttgtaaagga tcctttgcag gatatttgac ccatcccttt
     2341 actattgcga agttgtaatt cttctgttta ttttcaatgt tggttttgat tttaagttcc
     2401 gaaccccatc ttttttccag aaaatacata tccaaaattt gagaaaaagg aaatacaata
     2461 ttttgatcgc ttttttccat atcattcctt aactcggtaa taccataacc ttctacgggc
     2521 aagaaaacat tcttgttctc cttgaaccgc aagagctgtc gctgtgaatg aacttcatga
     2581 atcctgtagg acatgttggt ttttgttata aatatcagat tcttttctgt cacaacaagc
     2641 attccttccc ttttcctttt cataaaacca tcctctccac cccaaatcca catcagatgt
     2701 gctttaatct gctcattcca ttccaacatt tacaattcgt cattatcatg gatttatttt
     2761 tttcactgaa ttgaatatac
//
LOCUS       DASPFX010000055         3936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_908242, whole genome shotgun sequence.
ACCESSION   DASPFX010000055 DASPFX010000000
VERSION     DASPFX010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3936
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908242"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="VD694_01200"
     CDS             <1..858
                     /locus_tag="VD694_01200"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HXW11346.1"
                     /translation="SKTIATSYVSIFESLWNQTELFEELKKSNRQLANLYKQVIATNK
                     QMKTSSNMQKEFINVAANELRAPIQPILGLAEVLRQQNQQPDNKEDQMYSENNELLNV
                     IIRNARRLQQLTENILDVTKIENNSMELNKEEFILSKAVLESFTDFANQLSKEQKENV
                     KLIVALDEGDVLVVADKHRINQVINNLLNNALKFTKQGQITLSTEKEKKYGKEVIVKI
                     QDSGPGIDPDIMPRLFTKFATKSYSGTGLGLFISKSIVETHGGKMWAENNLDGKGATF
                     LFTLPIAKN"
     gene            complement(1335..2141)
                     /locus_tag="VD694_01205"
     CDS             complement(1335..2141)
                     /locus_tag="VD694_01205"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HXW11347.1"
                     /translation="MKIIIEGAEIYCERRGNGPLLLLIHGAMEDAGFYSSAADILAGK
                     FTAVSYDRRCNSRSSGDRSADMTVAQQARDAASIINTMGFDKAIVVGRSGGAIIGLEL
                     AATRPELIDFLIVHEAPVIELLPEPEAQRWRMFVDEIYTKSLREGWQAAQTEFMSSLI
                     NVPDKPYPSDLNERLSGNVDFFFKHEFRAFYKYLPNIESIRNHNVKMVTATGKDSDDA
                     YYVQATRALAAKLGCDNVEFPGHHDVSFWMPEGFADAILSTLRRHGYGSQ"
     gene            complement(2233..3600)
                     /locus_tag="VD694_01210"
     CDS             complement(2233..3600)
                     /locus_tag="VD694_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11348.1"
                     /translation="MKKDGPPPLSIMSNNPSSKMEAQKSSLKINDPLKSTLNDFLKFP
                     LSEAIAGRRARRFCMGAEIPDGVLSFKSKHEPLPLSEIEQLLLLSYMGGVTGWHFAIM
                     RHERYAPKLSNYSASPVGRTFPSAAGFITFELFYTDDNGTYIFPTRDFHPEMEIHDGK
                     VDLEEFLSVHKKRIRKLSDKRLYIPRSEPYMEGHNTWIANHEGSTLVMPVGDLAQHTL
                     SSIAFYTQNGFPLYDDIAKKPIPGIEKYAKIADPNKALPLTAVEQGCLAELTAELSSS
                     CYAGILTMQAMGLGGWMYDGVDRHTVLGASGDPNVPGLGFRYDTNERWSLPNPTGLKG
                     VFEGYCPPHYKNMRDAVEALAKRKFGEGGVFNPNTPGAWSDSPKVRGSAEPYTEEFKE
                     CIALQAQYIYDTYGKFPGTIQSIFCFMYVQAQHLDLDFYDHHFKPGAYLTIHKEHMKK
                     WHSTE"
     gene            3718..>3936
                     /locus_tag="VD694_01215"
     CDS             3718..>3936
                     /locus_tag="VD694_01215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11349.1"
                     /translation="MRSKMQQQQTDWRRAKVLDLSSQGYSQIQIATNLQMDKSIISRD
                     LAYLRQQAQDNLKIHIQDKLPEEYQNCMT"
BASE COUNT         1240 a          793 c          765 g         1138 t
ORIGIN      
        1 agtaaaacaa ttgcaacttc atatgtctct atctttgaaa gcctttggaa ccaaactgag
       61 ttatttgaag agctaaagaa atcaaataga cagcttgcta atttatacaa acaagtaatt
      121 gcaaccaata aacaaatgaa gacgagtagc aacatgcaaa aggagtttat caatgtagca
      181 gcaaatgagt tgagggcccc tatacaacct atattaggat tagctgaagt acttcgtcag
      241 caaaatcagc aaccagacaa taaagaagat caaatgtatt cagaaaacaa tgaactttta
      301 aatgttataa taagaaatgc aaggagatta caacagctga cagaaaatat actggatgtt
      361 acgaaaattg aaaataactc aatggagctt aataaagagg aattcattct aagcaaggcc
      421 gtacttgaat catttacaga ttttgcaaat cagcttagta aagaacagaa agaaaatgtg
      481 aagttgatag tggcgttgga tgaaggagat gttcttgtcg ttgcagataa gcacagaatt
      541 aatcaggtca taaataacct cttaaacaat gcccttaagt ttacaaaaca aggacaaatt
      601 accctatcta cggaaaaaga aaaaaaatat ggtaaagaag tcatagttaa aatacaagat
      661 agtggtcctg gtatagaccc tgatataatg ccaaggttat ttaccaaatt cgcaaccaaa
      721 tcctattcag gaacaggcct tggacttttt attagcaaga gtattgttga aactcacgga
      781 ggaaaaatgt gggctgagaa taatttagat ggaaagggag ccacattttt gtttaccttg
      841 cctattgcca agaactagct tttttgctgt ctcaacaaag gtaatggcag ttcgtatcca
      901 acggactatg tctaaactaa tcttgaaacc tgagcttttg acaggaaata agtttctcat
      961 aaaggagaga ttggagtaat ccaacatcac atctgggcca agtaaaagta tattcttata
     1021 acctttattg aagcacaggg taattccgta ctgcatttga taaactcttt attatgatgg
     1081 tttacgcagc cataaatagc ggttaaatga actcttactt gaaggcggct acgcagttat
     1141 ctatcaagac ttttgcagca taagcgaatt ttcttcatct agttgggctc aaagtcgagg
     1201 atgctaacag agtacaggtt accttcatga aactgacaca gactatctta acatacaaga
     1261 aatagacaag gagattttga gaccgacttt agtctatttc ttatagaaca acggatcggt
     1321 taacatcttc tagtctattg cgaaccgtat ccgtgccgcc ttaacgtact cagaatggca
     1381 tctgcgaacc cctctggcat ccaaaatgat acatcatgat gacctgggaa ctcaacgtta
     1441 tcgcacccaa gtttagccgc tagagcccta gttgcctgga catagtacgc atcatcacta
     1501 tcttttcctg tggctgttac catttttaca ttatggtttc tgatactctc aatgttgggt
     1561 agatacttat agaaagctct gaattcatgt ttgaagaaga aatccacgtt accagagagc
     1621 cgttcattga ggtcagaggg atatggctta tcagggacat ttatcaggga agacatgaat
     1681 tctgtctgtg cagcctgcca tccttcacgc agactctttg tatagatctc atcaacaaac
     1741 atacgccatc tctgcgcttc tggttcaggt aaaagctcaa tcaccggagc ctcatgaact
     1801 attagaaagt cgattaactc cggccttgtt gctgcgagtt ctaaacctat gatggcacct
     1861 ccgctcctcc caactacgat ggccttatca aatcccattg tgttgatgat ggaagcggca
     1921 tcgcgagcct gttgggcaac tgtcatgtca gcgcttcgat ctccagagct gcgagagttg
     1981 catcgcctat cataagacac agcagtaaat tttccagcaa gtatgtcagc ggcggaggag
     2041 tagaaccctg catcttccat ggcaccgtgg attagtaaca aaagaggacc attgccccgt
     2101 cgttcacaat aaatctctgc tccttctatt attatcttca ctttagctga aatacaatta
     2161 agttcgcccc ttttttatat ttctaaatat gaaactaaaa atgaacctca tacagcagct
     2221 tttcagaaaa tcttattctg tcgaatgcca ttttttcata tgctctttgt ggatagtcaa
     2281 ataagcacct ggtttgaagt ggtgatcgta aaagtccaag tctaaatgct gagcctgaac
     2341 atacataaag caaaaaatgc tttgaatagt ccctggaaac ttgccatagg tatcgtaaat
     2401 gtattgggct tgtaatgcta tacattcttt gaattcttcg gtatatggtt ctgcacttcc
     2461 tcttacctta ggactatcac tccacgctcc aggggtattt ggattgaata cgccaccttc
     2521 tccgaatttt ctctttgcca aagcttcaac agcatctctc atgttcttat aatgaggagg
     2581 acagtatcct tcaaaaactc ctttcaagcc tgtcggattg ggcaaagacc atctttcatt
     2641 tgtatcatat ctaaatccca gaccaggaac attaggatct ccactggctc ccagcactgt
     2701 atgcctgtca actccgtcat acatccatcc accaagaccc atagcttgca tggtcaaaat
     2761 tccagcataa catgaggagg aaagttcagc tgtcaactca gctagacaac cttgttctac
     2821 agctgtgagt ggtaaggctt tatttggatc tgctattttt gcatattttt ctattccagg
     2881 tattggcttt tttgcaatgt catcatataa aggaaaacca ttttgtgtgt agaaggctat
     2941 agacgatagc gtgtgctgag ccaaatcacc aactggcatt acaagagttg agccctcatg
     3001 attagctatc cacgtattat gaccttccat ataaggttct gacctgggta tgtatagtcg
     3061 tttatcagaa agttttctta ttctcttttt atgtactgaa aggaactctt ctaggtcaac
     3121 tttaccatcg tggatctcca tctctggatg aaaatcgcgt gttggaaaaa tgtatgtccc
     3181 attatcatca gtgtagaata gctcaaatgt gataaagcca gccgctgaag gaaaagtacg
     3241 acctacagga ctagcagaat agttagagag tttaggagca tatctttcat gtcgcatgat
     3301 tgcaaaatgc catcctgtta ctccacccat gtacgagagt agaagtaact gttctatttc
     3361 actaagaggc agaggttcat gttttgattt aaatgaaaga acaccatcag ggatctcagc
     3421 gcccatgcaa aatcttctcg cgcgtcttcc tgcaatggct tccgatagag gaaacttcaa
     3481 aaagtcattt agtgtgcttt tcaggggatc atttattttc agagaactct tctgagcttc
     3541 catttttgag ctaggattat tggacatgat acttaagggt ggtggcccgt cttttttcat
     3601 tgtagaagta tagagatatt taaagcagac ttcctttcct aatgtagtat agtttccaga
     3661 tatgccaagt gcaatgttgc aactgtatca aaaaatgagt atgggatggt gcaacttttg
     3721 aggtcaaaga tgcaacagca acagactgac tggcgaagag ccaaagtgtt agatttatct
     3781 agccaaggtt atagccaaat acaaatcgca actaaccttc agatggataa gtcaatcatt
     3841 agcagagatc tagcctatct tagacaacaa gctcaggaca atcttaagat acatattcaa
     3901 gacaaactac cagaagaata tcaaaactgt atgact
//
LOCUS       DASPFX010000056         4032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1478060, whole genome shotgun sequence.
ACCESSION   DASPFX010000056 DASPFX010000000
VERSION     DASPFX010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1478060"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..1212
                     /locus_tag="VD694_01220"
     CDS             148..1212
                     /locus_tag="VD694_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC/Alx family metal homeostasis membrane
                     protein"
                     /protein_id="HXW11350.1"
                     /translation="MWTAFALFVGVALAIDLGMIESIRRRFSSKYNNSKGNNTQVLSN
                     QEKNKKTFEHALRWTIIWISLAGVFAGLIFVSMGSDKSLLFLTGYAIEKSLSVDNMFV
                     FVLIFSSLGIPYIYQHKVLMLGILSAIGLRIVLILAGISLLESFHWMIYVFGGLLVFT
                     AIRMILAKKEKKIEIEKNIAVRILKKFIPIELKGDTSDKFLHRASVGILYATPMLIAL
                     VIIEMTDLVFALDSIPAILAITTDSFLVITSNIFAILGLRSLYFLLAGMIDKFYYLKP
                     GLAAILLFIGIKMLISEFYEIPMPTSIAAIFGILGLAILLSFVRIKYVLEKDGKSRPE
                     REVSLNKNDSDENQTNKFSN"
     gene            complement(1288..2679)
                     /locus_tag="VD694_01225"
     CDS             complement(1288..2679)
                     /locus_tag="VD694_01225"
                     /inference="COORDINATES: protein motif:HMM:NF038049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SelD-related putative sulfur metabolism protein"
                     /protein_id="HXW11351.1"
                     /translation="MTEEFWRRIEEYRRLGFDPLRWIANGTNEIDNWKLRHAVREMKR
                     SSVKLDTNWFDAFHYADGKTPDLTRRVFSIRDPAVSNEVDLKHAIAMLRVHKEIENDS
                     TLFTEVLNNFFKNFRCKVSINKSTFAVTEHRDAQFALLDYIGLHRGDKVGFTAADNAT
                     AHVIDPTLEPDSELHSDIPMTRCIDNLNLLGCTSGYNLYPIYDSPQESLLDTIGKNLD
                     AFTSRYNLMMDEYSSLKIGRLFFGATAIANTFKELPTNYDQIEETMQIIITNPLGSLM
                     ALCLYMLAQIDEKTTSSLENKGISNQDLVSGKDECMKNLCEPHFSLGKIVSKYCPAFG
                     TPLQKSENLIAVHPLASNGILGLWELARISNCHLVINDIPMVYEEIARLASSEAFVMN
                     PTASMNGCHTIVATKDISNLILDELRRHNFKAMVIGFVAKKGEGKVTFGDNIKDHFAA
                     KIGLSILNTPVGK"
     gene            2992..3705
                     /locus_tag="VD694_01230"
     CDS             2992..3705
                     /locus_tag="VD694_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HXW11352.1"
                     /translation="MFTSMDSNTENFDLKETLFGINSRVTLCQMCSRLGEHIKFISSN
                     IPKRFRNDPYWARPVPSFGDVNARLLIIGLAPAAHGGNRTGRMFTGDCSGDWVAKALF
                     QTGFANTSVSRCVSDGFALNDAYITAVVRCAPPQNRPTSSEITNCAQYLRSELDILEK
                     TVRVVVTLGHIAFQTYCKFVDNTGIEFRHGGKFNIKDNKVLLSSYHPSRQNTNTGRLT
                     WNMWIQVFKMARMILDSQH"
BASE COUNT         1255 a          744 c          769 g         1264 t
ORIGIN      
        1 aattagtatt atcaaagatc aggatcatgt ggcaatacaa agtaacacat tgaatacctg
       61 caagtcatat atagcttaga ctaaaaattt cttatcgtct agacgatgga acaacttgta
      121 cttgctgata gtagctatca atccttgatg tggactgctt ttgcgttatt cgtaggggta
      181 gcattagcga ttgatttagg gatgattgag agtataagga gaagattctc ttcaaagtat
      241 aataactcca aaggaaacaa tacacaggtt ctaagtaacc aggaaaaaaa taagaagaca
      301 ttcgaacatg ctttgcgttg gaccataata tggatttcgc tcgcaggcgt atttgcaggc
      361 ctaatttttg taagtatggg atctgacaaa tcactattgt tcctgacagg atatgctatt
      421 gaaaaatcac taagcgtaga taacatgttt gtatttgtac taatattttc atcccttggt
      481 attccttaca tatatcagca caaggtattg atgcttggca tactaagtgc aatcggactt
      541 agaattgtcc tcattctcgc agggatttct ctgcttgaat catttcattg gatgatatac
      601 gtcttcggtg gtctattggt atttaccgca atacggatga tattagcaaa gaaggagaag
      661 aagatagaaa ttgaaaagaa catagcagta agaattttga aaaagtttat tcctatcgag
      721 ttaaaaggtg atacctcaga taagttccta catcgggcat cagttggcat attgtatgca
      781 accccaatgc taattgcatt agtgattata gagatgacag atttggtgtt tgcacttgat
      841 tctattcctg caattcttgc aattactaca gattccttcc tagtaataac ttctaatata
      901 tttgctatac tgggcttgcg gagcctgtac tttctactag cgggaatgat agacaaattt
      961 tactatctaa aaccaggatt ggctgcaata ttgcttttca taggaatcaa aatgttaata
     1021 tctgagtttt acgaaatccc catgcctact tctatagctg ctattttcgg aatcctcgga
     1081 ttagcaatat tgctttcatt tgttagaata aaatatgttt tggaaaaaga tggaaaaagc
     1141 agaccagaga gagaagtttc actcaataag aacgacagtg atgagaacca gactaacaag
     1201 ttttcaaatt agtcacacaa gtctcagaat tcaaataata cgtattcatg taacaaatag
     1261 tctccgtaag ctgttcaata tgatatttca cttacctact ggtgtattaa gtattgatag
     1321 tccaatttta gcagcgaagt gatccttaat gttatcacca aaggtaactt tcccctctcc
     1381 ctttttggca acaaatccta ttaccattgc cttaaagtta tgccttcgta attcatcgag
     1441 tattaaattt gaaatatctt tagttgcgac aatcgtgtga caaccgttca tggaagcagt
     1501 tggattcatt acgaatgctt cgcttgaggc tagtcttgca atttcttcgt acaccatagg
     1561 gatatcattg attacaagat gacaattact tattcgcgca agctcccata agccaagtat
     1621 gccattacta gctaaaggat gaactgcaat caggttttcg ctcttctgga gcggggtccc
     1681 aaacgccggg caatactttg agactatttt tccaagtgaa aaatgtggtt cacagaggtt
     1741 cttcatacat tcgtctttcc cagagacaag atcttgattg ctaatgcctt tattctctaa
     1801 agaagaagtg gttttttcat caatttgtgc aagcatgtat aaacatagtg ccatcaatga
     1861 accgagcgga ttagtgataa tgatctgcat tgtctcttca atctggtcat aatttgtagg
     1921 tagctctttg aaggtgttag caatagcagt tgcgccaaag aagagcctgc ctattttaag
     1981 agagctgtat tcatccatca tgaggttata tcgagatgta aatgcgtcaa ggttttttcc
     2041 aatggtatca agcagagatt cttgaggaga atcataaatt ggataaaggt tatatcctga
     2101 tgtgcatcca agcagattca aattatcgat gcaccgtgtc atcggaatgt cggaatgaag
     2161 ctcagaatca ggctctagtg tcggatcaat cacatgtgcg gtggcattgt cagcggcggt
     2221 aaaacctacc ttatctcctc tgtgcaaacc gatgtagtca agcaatgcaa attgcgcatc
     2281 tctgtgttct gttactgcga atgtgctctt attgatagaa actttacatc ggaaattttt
     2341 gaagaaatta tttagaactt ctgtaaataa tgtagaatcg ttttctatct ccttatgtac
     2401 acgaagcatt gcaatggcgt gtttaagatc aacttcgttt gacactgcag gatctcggat
     2461 ggaaaagacc cttcttgtaa ggtcaggtgt ttttccgtcc gcataatgga atgcatcgaa
     2521 ccaatttgta tccaacttta cagagctacg tttcatttct cgtactgcgt gacgaagttt
     2581 ccaattatcg atttcattag taccattggc aatccacctc aaagggtcga aacccaatcg
     2641 tcgatattct tctatcctgc gccaaaattc ttcagtcaac cgcaaaggtc ctcctgcatc
     2701 tctaacaaat gcggtatata ttaccagata tttaaaaaac actattttgg aaagaaatcc
     2761 tttgatattc atgtttgtat atcaacaaaa attagtaaga atttctattt gtacacagaa
     2821 tcataataag gaaacttgaa ctcacacaag ctctgaacct tattcagtta tttgactccg
     2881 ccttcaaaac ccaataacta taggggtaat tctatcaatt tgaaagtaga tataaaatat
     2941 taatatacgt gtcttacttc cgaggaagtt aactgaagga taaaggagta aatgtttaca
     3001 tcgatggact ccaatactga aaactttgat ttaaaggaga cgctttttgg gattaattcg
     3061 agagtaactt tgtgtcagat gtgttcacgg ttaggtgaac atataaaatt tatttcatca
     3121 aatataccga aacgtttcag gaatgatcca tactgggcaa gaccagttcc cagttttgga
     3181 gatgtaaatg caaggttact aattatagga ctggcaccag ccgctcatgg tggaaatagg
     3241 acaggacgca tgtttacagg tgattgctct ggagactggg tcgccaaagc attattccaa
     3301 acggggtttg ctaacacttc tgtcagtcgt tgtgtgagtg acggatttgc attaaatgat
     3361 gcatacatta cggcagttgt acgctgtgcg ccacctcaga atcgtcctac ttcttccgaa
     3421 ataacgaact gtgcccaata tcttaggtcc gaattggata tacttgaaaa gacagttagg
     3481 gtagtcgtca ctctcggaca tattgcattt caaacatatt gcaagtttgt cgacaacacg
     3541 ggaatagagt ttcgacacgg aggtaagttc aatatcaaag ataacaaggt tcttttgtcg
     3601 tcttatcatc caagtaggca gaacactaat acaggaagat taacgtggaa tatgtggata
     3661 caagtcttta aaatggccag aatgattcta gattcccagc attaatttcc aaataaacaa
     3721 tgaggtctca atcaattttc taaaaaaaca tttttcgtgt ttaactatga cttcatctca
     3781 agtcaacgtg gctagacaat aatcccatag cagcgttcgt aaaattcggc ttttggtata
     3841 tctagatatt atcgaatagt ttatttttgc cacattctaa tttctcgagt aaatttaaga
     3901 gatcaattta taaacagcat ttagcacagt tcgtaatccc aacatgtcaa tatagctggt
     3961 tcatgcactc aatttctcca aggatagatt caatgtcttt ctccccaaca ataagactac
     4021 tatagctgct ac
//
LOCUS       DASPFX010000057         3412 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_869762, whole genome shotgun sequence.
ACCESSION   DASPFX010000057 DASPFX010000000
VERSION     DASPFX010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_869762"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..306
                     /locus_tag="VD694_01235"
     CDS             <1..306
                     /locus_tag="VD694_01235"
                     /inference="COORDINATES: protein motif:HMM:NF013202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11353.1"
                     /translation="SSKKHELRRVIHNLLTDRIPQWDLNTFIKQVTDDNSEFNREILE
                     KGRKISSLRHIGIKKTKLVSSPTTPVQKIDDANETANETANETANNIESVKDPEKAA"
     gene            356..784
                     /locus_tag="VD694_01240"
     CDS             356..784
                     /locus_tag="VD694_01240"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HXW11354.1"
                     /translation="MTISTSINIVAHATEDVPKILQKMSDVFSISREKILVSSTEGHW
                     GNEISLIKADCDHKESYVLLERIIANLKISEKKYLIQSISNSFDEKDNFYIRLNKQSM
                     CKGVISLSEHDSIRIRFKPIKEFNQNNKFKDHVISLFTKK"
     gene            826..1335
                     /locus_tag="VD694_01245"
     CDS             826..1335
                     /locus_tag="VD694_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11355.1"
                     /translation="MSKLSGIDIIGIDSGNLSNISPQENIILRIDKKNPIADYFPYLI
                     VADNIRSLDSKTDLFLIDPFQGKDALKRKAKRGLGIEISINPVKKLDTHLVAQWLKEL
                     KSIYVLCQSNDCQFILSSGATSINEMISARSFESILTVVGINPRRYWMKISEWLYAKT
                     KARWQYVKS"
     gene            1322..1657
                     /locus_tag="VD694_01250"
     CDS             1322..1657
                     /locus_tag="VD694_01250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11356.1"
                     /translation="MLNHREKRRYVAIMYEESGTYRPFQLHERIGIRYKELFGIFQMQ
                     SAMLKLYDSEFGNIMIVRCKLKYLDYFLVSVVLSEPSLTVISISGTLKRLRKNISKMD
                     FRNIKNIRS"
     gene            1973..>3412
                     /locus_tag="VD694_01255"
     CDS             1973..>3412
                     /locus_tag="VD694_01255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11357.1"
                     /translation="MKSLDKYYFDPRYLLTYSIFSTICIILIFFLGPQTYSESIGLGN
                     SSMILSNAKFDSINPYFSVSNNSIFSVWVSNLGPNNSEVMFKKIDEKSKSFASAVNIS
                     NATGISNLARLSSSDNNIYVTWEDKQTDKWKLLFSKSNDKGTQFGSVTNLSKSTGNVH
                     LHDLSASGKNVFVLWAANENISSSNKEIFFRKSQDSGDSFGDVINLSKDIDDSLDPHM
                     VINQNGMIIYIVWTKCDTKHDDPDCHVAFTRSLDQGSTFTDSMIIDAEKFLPKGSNST
                     SGNAIFNSNSNVFPPYLPHNSTLNEEISAINPIIFTSLEGKQVYVLWEQNTFGKGDSE
                     IFLKSSNDYGNSFDSTINISNSSGTSRLAHGNIFGEDLYVTWADTLNQSGTFDIMLTK
                     IDAKNQLGKVLNLSNNSGNSVSPYLWISDNDLIYVIWSDSTNDSSVLLSTIDPSGPTF
                     TREVLRSGQTEIFTNPRIIETEDKLWTSWT"
BASE COUNT         1236 a          554 c          609 g         1013 t
ORIGIN      
        1 tcatcaaaga aacatgaact aagaagagtc atacataact tgttaaccga tagaatacca
       61 caatgggacc tcaatacttt cataaaacaa gttacagatg acaatagcga atttaataga
      121 gagattttgg aaaagggtag aaaaatttct tctttacgac atattggcat caagaagacc
      181 aaactagtat catcacctac gactcctgtt caaaaaatcg atgatgcaaa tgaaactgca
      241 aatgaaactg caaatgaaac tgcaaacaac atagaatcag tcaaggatcc agagaaggcg
      301 gcttaaagaa attcaatcga acttttcgga ttatttctag tcagataatt taaggttgac
      361 tatttctaca tccataaata ttgtagcaca tgctactgag gatgttccga aaatacttca
      421 aaaaatgagc gatgtttttt cgatctctag ggaaaaaatt ctggtatcat ccacagaagg
      481 tcattggggt aatgaaattt cacttatcaa ggcagattgc gatcacaagg aatcatatgt
      541 attattagag agaatcattg cgaatctaaa aatcagtgaa aaaaaatatc ttatacaatc
      601 aatatctaac tcatttgatg aaaaagataa tttttacatc agattaaaca agcaatcaat
      661 gtgtaaagga gtgatctcct tatctgaaca cgattcaata agaataagat tcaaaccaat
      721 taaagaattt aaccaaaata ataaattcaa ggatcatgtg atcagcttat ttacaaaaaa
      781 atagatctag gagttcatgt atctgatatt agcaaagcta tctctatgtc caagttatca
      841 gggatagaca tcataggtat tgattcagga aacttgtcaa atatcagtcc ccaagaaaat
      901 attatactta ggatcgataa gaaaaatcca attgcagatt attttccata cttgatagtt
      961 gcagataata tcagatcatt agatagtaaa actgatctat tcttgatcga tcccttccaa
     1021 ggaaaggacg cattaaaacg caaagccaaa agagggctcg ggatagaaat ttcaattaat
     1081 cctgtgaaaa aacttgatac gcatttagtc gctcaatggc taaaggaact aaaatcgatt
     1141 tatgtactct gccaatcaaa tgactgtcaa ttcatactat caagcggtgc gacttccatt
     1201 aatgaaatga tttctgcaag atcatttgaa tccatattaa ccgtggtagg tatcaatcca
     1261 agacgatatt ggatgaaaat atccgaatgg ctttacgcaa aaaccaaggc gagatggcag
     1321 tatgttaaat catagagaaa aaagaagata tgtagctata atgtacgagg agagtggaac
     1381 ctatcgaccc tttcaattgc atgaaaggat aggaatccga tataaggaac tctttggtat
     1441 ttttcaaatg cagtcagcaa tgttgaaact gtatgattct gaatttggaa acataatgat
     1501 agtaagatgc aagctcaaat atcttgatta ttttttagtc tcagtggtat tgagtgaacc
     1561 atcacttaca gtgattagta tatcaggtac gctaaagagg cttaggaaaa acatctctaa
     1621 aatggatttt agaaacatta aaaacattcg tagctaaaca tatggagggg atgaggtgaa
     1681 tatttgttgc tgctcaaatc tgagtcaaaa tctatgaaga tctcgcgacg atctgaccca
     1741 tttcatgaaa taaggtcaaa atattatttg taaaatcttt ctcaagtgag tattaatcag
     1801 catcatgaga gatccgaaaa tgcaaagtta ttattcaaac aaaactataa tatcatcggt
     1861 taattatcta acaaaaaatg tcccctttaa gctctcgata tctgaactcc tatttgaata
     1921 aaatcagacg tattttgaat aatcgtaccg tactatcaca attggacccg atttgaaaag
     1981 tctagacaaa tattattttg atccccgata tttgctaact tattccatat tttctactat
     2041 ttgtattatt ttgatatttt ttctaggacc tcaaacgtat tcagaatcta tcggactggg
     2101 aaattctagt atgattctaa gcaatgcaaa gtttgactct ataaatccat atttctcggt
     2161 ttcgaacaat agcatttttt ctgtctgggt tagtaattta ggtcctaata atagcgaggt
     2221 tatgttcaaa aaaatagatg agaagtcaaa gtcctttgct agtgcagtga acataagtaa
     2281 tgccactgga atttcaaacc tagcaagatt gagtagtagt gataataata tctacgtcac
     2341 atgggaagat aagcagaccg acaagtggaa attgcttttc agtaagagta atgataaagg
     2401 tacgcaattt gggtccgtaa ctaatctaag taaatccaca ggcaacgtac acctccatga
     2461 tctctccgct tcaggtaaga atgtatttgt actgtgggcc gcaaatgaaa atatttcgtc
     2521 ctcaaacaag gaaattttct tcaggaaaag ccaagatagt ggtgactctt ttggtgatgt
     2581 tatcaatttg agtaaagata tcgatgattc gttagatcct cacatggtaa taaatcaaaa
     2641 tggaatgata atttatattg tatggactaa atgcgatact aaacatgatg atcctgattg
     2701 tcatgtagca ttcacacgaa gtttggatca gggcagtact tttactgact caatgattat
     2761 tgacgctgag aagtttttac ctaaagggtc aaacagtacc tctggaaatg caatttttaa
     2821 ttcaaactca aacgtgtttc caccttattt accacacaat tcaactctga atgaagagat
     2881 cagcgcaatt aatccaatta tctttacttc gttggaaggt aaacaagtat atgtattgtg
     2941 ggaacaaaat acatttggaa aaggcgattc tgaaatattt cttaagtcta gtaatgacta
     3001 tggtaattcc ttcgattcaa caataaatat cagtaatagt tctggcactt ccagactagc
     3061 acatggtaac atttttggag aagatctata tgtaacttgg gcagatactc taaaccaaag
     3121 tggaacgttt gatatcatgc tgacaaaaat agatgctaag aaccaactgg gtaaagtttt
     3181 aaatctaagt aacaattctg gaaattctgt ttctccatat ttgtggataa gtgataatga
     3241 tctaatttat gtaatatgga gtgacagcac taacgattcg tcggtactcc tttcgacaat
     3301 agatccttct ggaccgactt tcacaagaga agtactgaga agcggacaga cggagatatt
     3361 tacaaatcca aggatcattg agacagagga taaactctgg acaagttgga ca
//
LOCUS       DASPFX010000058         5528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1637592, whole genome shotgun sequence.
ACCESSION   DASPFX010000058 DASPFX010000000
VERSION     DASPFX010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1637592"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VD694_01260"
     CDS             complement(<1..240)
                     /locus_tag="VD694_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HXW11358.1"
                     /translation="MHGTGGNEDDLIPLARELYPRAAILSPRGKVLESGMPRFFRRLA
                     EGIFDVGDLKFRTHELADFVQGASKVYKFNLRYVIS"
     gene            complement(352..1476)
                     /locus_tag="VD694_01265"
     CDS             complement(352..1476)
                     /locus_tag="VD694_01265"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HXW11359.1"
                     /translation="MRSKWEQDDRTHKSIRMNHFICMNAAARKKSNDSPSKKGVFGIH
                     HVTAITGDPQRNIEFYANNLGLRFVKLTVNQDDPTSYHLYYGDEVGRPGTILTFFNWP
                     NISKGQRGRSEVATVSFLIPENSIRYWIDRFKEKRIEFRGPYKRFENEQIITFNDPEG
                     LELELAAHKSSKDREANVWKEGPIPLEHAIRGFYSVTLSEGGYERTASVLIDELGFVS
                     TQQDGSRFRYEIPRECAREEEDIGGANIVDVLCLPYTQQAIIGIGSVHHVAYRTPSDK
                     QQQVLRQSIVRAGLNATPVIDRFYFHSVYFQEPGGILFEIATNPPGFTIDEKLEELGT
                     HLVLPPWLEPDRKYLEKVLPKVNLPFSSKTAKITEKRIKE"
     gene            complement(1673..1966)
                     /locus_tag="VD694_01270"
     CDS             complement(1673..1966)
                     /locus_tag="VD694_01270"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW11360.1"
                     /translation="MQSDNRTSVIVQILDICKNGAKKSVIIHKLSLSNSQLRRISAEL
                     VDKGFLQFSEPGIYITTHKGYEFLWLNSKDNRKQQDSGTNKNSIIGMNFMNSK"
     gene            2163..3101
                     /locus_tag="VD694_01275"
     CDS             2163..3101
                     /locus_tag="VD694_01275"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HXW11361.1"
                     /translation="MKSAQITRYGNTSEVIKINQTNAPNLSAGKVLVNVQVAGINPID
                     WKIREGYMQQMIHLQFPSTLGMDFSGIIKQVGEEISSDFTQGDEVYGQAGIPSGGSGA
                     FAEQALASVTSIAHKPKTLDHSEAAALPLVGVSAWQALVEHIGLSKGQRILIHGGAGG
                     IGSIAIQLAKNLGAYVATTVSTEDKQFVHELGANEVIDYKTQTFEDVVKDYDAVFDTV
                     GGETYTRSFRVLKKDGIIVSMLEQQNLELMKQFGVKAISQFTQVNKERLAKLAEWVDQ
                     NKVNIHIEKTFSLDEAAKALDYLRDIHPRGKIVLAI"
     gene            complement(3255..4697)
                     /locus_tag="VD694_01280"
     CDS             complement(3255..4697)
                     /locus_tag="VD694_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HXW11362.1"
                     /translation="MAVDENKNIEKFDLIVIGSGSGLDVANAIFQHGLRVAIIEKDRM
                     GGTCLNRGCIPSKLLIHSADVAETIKRAHIFGIKIDGFTVDFQRMVERVNNITDSSSE
                     QIKNAFEGIENPKLFSDECKFVGEKILSLGEDKTNNNRKTLTADKILIAAGTRPRIPN
                     IHGLENSGYLTSDEIFRIKKQPKTLTIIGGGYIACELAHFFGALGTDVNILQRRDVLI
                     PDEDEEVSQKFTEIFSKKYNVYLGYEAKSISKDTDGNGGGTKFHITATKNDNTSTKTL
                     DIVSEQLLIAAGRIPNSDSLELDKTGISVNDKGYIVTDKYLETKVKGIFAIGDIVGRY
                     LFKHNANNEAQYAYHNIVASSTEKIPVNYYAMPHAIFSSPQVAGVGLREQDLKNMSIN
                     YYKSVYPYIKTAMGEAIEDREGFVKFLVDKADKKILGCHIMGTEASTLIHEVLVAMRY
                     GHGRIDSISGTIHIHPALSEVVARAAGHKE"
     gene            complement(4879..>5528)
                     /locus_tag="VD694_01285"
     CDS             complement(4879..>5528)
                     /locus_tag="VD694_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11363.1"
                     /translation="EPDPLLQAFTGTENSPVVATGPIFSEGGLYHFIVRITTIDFDRS
                     FIPDDKQPVYDGWLSVGSTLNQQVSLSDGKEIPIQIISYYDDIKDFNFDPSKKQIQFT
                     MPFNWNITRLEDQKQIMVHQEVLIPKGNSLASLSYTGTINGTDVTKNLMVDPSNSTKN
                     VVHFMLPKPAIIQIAEEVNNNGQAAASDGLMEFSLTPSTNATSSSMHDMTNMAGM"
BASE COUNT         1583 a         1104 c         1013 g         1828 t
ORIGIN      
        1 ggaaattaca tatcttaaat taaatttgta tacttttgat gccccttgta caaagtctgc
       61 cagttcatga gttctgaact ttaagtctcc tacgtcaaaa ataccctcag ctaatctacg
      121 aaagaatcgc ggcatacctg attctagcac ttttccacgt ggactaagta ttgcggctcg
      181 tggatatagc tctcgagcta gcggtatcag gtcatcctca ttacctcctg ttccgtgcaa
      241 taaaagtaaa gtgacctggt ctggtctagt agatgctggg atgaattgat ggataaatcc
      301 tagttctgaa ggcgatgatc ttttctatgt attttctttc atgtattttt attactcctt
      361 aatccttttt tctgttattt ttgctgtttt tgatgagaac ggaaggttga ccttaggcaa
      421 taccttttca agatatttgc gatctggttc aagccaaggg ggaagcacga gatgtgtacc
      481 aagctcttct aacttttcgt ctatcgtaaa ccccggagga tttgtagcaa tttcaaaaag
      541 aattccgcca ggttcttgga aatagacaga atgaaagtaa aatcggtcta tcacgggagt
      601 tgcatttaaa ccggctctaa ctatactctg acgcaatacc tgttgttgtt tatcagaagg
      661 agtacgatat gcgacatggt gtactgatcc tattcctatg atagcctgtt gagtgtatgg
      721 caaacaaaga acatcaacaa tattggctcc accaatgtcc tcttcttccc tagcgcactc
      781 tctagggatt tcataacgga agcgacttcc atcttgctgt gttgaaacga atcctaattc
      841 atcaattaag acagaagcag tacgttcgta ccctccttcc gataaagtta cggaataaaa
      901 gcctcttatt gcatgctcaa gggggatagg accttctttc catacattag cttctctatc
      961 tttagaagat ttatgagctg cgagttcaag ttctagccct tcgggatcat taaatgttat
     1021 tatttgttca ttttcaaacc gtttgtacgg tccgcgaaat tctatccttt tctccttaaa
     1081 tctatctatc cagtatctta tggaattctc agggatgaga aaagatactg tggctacttc
     1141 acttcttcct ctctgacctt tcgatatatt tggccaatta aaaaaagtaa gaatagtgcc
     1201 tggacgtccc acctcatcac cataataaag atgatatgaa gtaggatcgt cttgatttac
     1261 tgttaacttt acaaaccgga gccccaaatt attagcataa aattctatgt ttctttgcgg
     1321 atcacctgtt atcgccgtaa catggtgtat accaaaaacg ccttttttag atggactatc
     1381 gttactcttt ttcctagctg ctgcgttcat acatatgaaa tgattcattc taatactttt
     1441 atgtgttcta tcatcttgtt cccatttgct cctcattgcc gatttcacaa tcattattag
     1501 ctaaacttag tacttcctgc tactgctact gcacctgcta agagttgtac tgcttatcag
     1561 tcagtcagtc agtagtgata ctatgtctca ctatttgtgt ttgattacat catttaatat
     1621 tatttctcaa cctgatgtct tcgagttgcg aggcctgccg gtatctgggt agctattttg
     1681 aattcatgaa attcattcca atgattgagt ttttgttagt tcccgaatct tgctgtttcc
     1741 tgttatcttt gctattgagc cagagaaact cgtaaccttt gtgagttgta atatatatcc
     1801 caggttcact aaactgcaaa aaacctttgt cgactaactc ggctgaaatt cttctcagct
     1861 gactatttga aagcgatagc ttatgaataa tcacagattt tttcgcccca tttttgcata
     1921 tgtcaagtat ctgaactatc acacttgtcc ggttatctga ttgcatttta cttgcattta
     1981 caatggatta ctaatgtaat aacagattgc acggttggtg aacgcccatc ccagaaatgt
     2041 gacaagtagt aaatgggtac ataattgaac gtcgtccgcg atcaatttca cgcttacgca
     2101 atattactaa tttacaaatt catactgacg ctttttaata tcttaattac ctagtattga
     2161 caatgaaatc tgcgcaaatc acaagatatg gaaatactag cgaagtaatc aagattaacc
     2221 aaacgaatgc tccgaaccta tccgctggaa aagttctagt caacgtgcaa gtagccggta
     2281 taaacccgat tgattggaaa attcgagaag gttacatgca gcaaatgata catcttcaat
     2341 ttccttcaac cttaggaatg gatttttcag gtattatcaa acaagtcgga gaagagatat
     2401 cctcagattt cacgcaaggt gatgaggtat atggacaggc aggaattcct agtggcggtt
     2461 caggggcatt tgcagaacag gctctggcca gtgttacaag tattgcacat aaacctaaga
     2521 ctctagatca ctcagaagcc gcagctttac ctcttgtagg tgtgagtgct tggcaggcgc
     2581 ttgtagagca tattggatta tcaaaaggtc aaaggattct aatccatgga ggcgcaggag
     2641 gcataggatc tattgctatc cagcttgcaa agaatttggg tgcttatgta gcaacaacag
     2701 taagtacaga agacaaacaa tttgtccatg agctgggggc aaatgaagta atagactata
     2761 agacccagac ctttgaagat gtagtaaaag attatgatgc agtctttgat actgttggtg
     2821 gggaaacata cacaagatct ttcagagtgt taaaaaagga tggcatcatc gtatctatgt
     2881 tagaacagca aaacttagag ctgatgaaac agtttggagt gaaagctata tcacaattta
     2941 cacaagttaa caaggaacga ttagccaaac tggcagaatg ggtcgaccaa aataaggtaa
     3001 acatacatat cgaaaagaca ttttctctgg atgaagctgc gaaggcactg gactatttga
     3061 gagacataca tcctaggggc aaaatcgtat tggcaatcta ggaggaacac acgcctttaa
     3121 atccataagg agctcaaaat cttagatgcg tattccaggc ttcccttcgc agctgcgcga
     3181 ccagaaaaat acactagggg ctaattgaaa cgaaaaaacc attgataagg aatattttct
     3241 aaaatacgtg ttgtttactc cttatgccca gccgctcttg caactacttc agagagtgct
     3301 ggatgaatat gaatagtccc agaaatggag tcaattctac catggccata tctcatggcc
     3361 acaagaactt cgtgaataag agttgatgct tcagttccca tgatatgaca gccaagtatc
     3421 tttttgtcag ctttatctac taaaaacttc acaaaaccct ctctgtcttc aatggcttct
     3481 cccattgcag ttttgatata aggataaaca gacttgtagt aatttatgct catatttttc
     3541 aagtcttgtt ctcgaagacc aacccctgct acttgtggtg aagaaaatat cgcatgaggc
     3601 attgcataat agttaacagg aattttctct gtagaggatg caacaatgtt gtgataggca
     3661 tactgggcct cattgtttgc attgtgtttg aaaagataac gtccaactat atctccaatt
     3721 gcaaatatcc cttttacctt ggtctcaaga tacttgtctg ttacaatgta acctttgtca
     3781 ttgacgctta tgccggtctt gtcaagctca agagaatccg agtttggaat tcttcccgca
     3841 gcaattaata gttgttcaga gacaatatca agcgtttttg ttgaggtatt atcatttttt
     3901 gttgctgtta tatggaactt agttccgccg ccattaccat ccgtatcttt tgagatagac
     3961 ttggcctcat atcccagata gacattatat tttttggaga atatctctgt aaacttttgt
     4021 gagacctctt catcttcatc tggtattaat acgtctcttc tctgtaatat atttacatct
     4081 gttccaaggg caccaaaaaa gtgtgctagt tcgcatgcaa tatatcctcc accaataatt
     4141 gtaagtgttt ttggctgctt ttttattcga aaaatctcat cactagtaag atatcctgag
     4201 ttttccaaac catgtatatt cgggattctt ggtctagtgc cggcggcaat tagtatttta
     4261 tctgcagtta aggtctttct attattattc gtcttatcct ctcctagaga aagtatcttt
     4321 tcgccaacaa acttgcattc atcactaaaa agcttaggat tttctattcc ctcaaatgca
     4381 tttttaattt gctcagaact tgaatcagtt atattattta cacgttctac cattctttga
     4441 aagtcaactg taaaaccatc aatttttatg ccaaaaatat gtgctcgttt tattgtttca
     4501 gctacatcag cactatggat tagaagtttt gatggaatac aacccctatt aagacaagtc
     4561 ccacccattc tatccttttc gataattgcg accctgagcc cgtgttgaaa tattgcattt
     4621 gccacatcta atccagagcc actcccaatt acaataagat cgaatttctc tatattcttg
     4681 ttttcatcga ctgccaattg aattggttta tcgctggtta tagataatat cttctttttt
     4741 tagagtctgt gacacacgta gcagatcaaa ctaacaaact aataggcaaa cctaaaatac
     4801 atcgtttgta gctgtcactt cttctaatgc atctatttct acgtctatct tcttttctct
     4861 tgttgacgac ttattaactt acatgccagc catattggtc atatcatgca tcgatgatga
     4921 agttgcattt gtagatggtg taagggaaaa ttccattaac ccgtctgaag ctgctgcctg
     4981 tccattatta ttaacctctt ctgcgatttg tataattgca ggttttggca gcataaagtg
     5041 caccacattc tttgtagaat tactaggatc taccattaga ttttttgtta catccgtacc
     5101 atttattgtt ccagtatagg atagggaagc caaggaattt ccttttggta ttaatacttc
     5161 ctgatgtacc attatttgtt tttgatcctc tagccttgtt atgttccagt taaatggcat
     5221 tgtaaattga atttgttttt tacttgggtc gaaattgaaa tcttttatat catcataata
     5281 agaaattatt tgaattggga tttcttttcc atcacttaga gacacctgtt gatttagagt
     5341 actgccaaca ctcagccagc catcatatac tggttgctta tcatctggga taaatgatct
     5401 atcgaagtca attgtggtta ttcttactat aaaatgatat aaacctcctt ctgagaagat
     5461 tggccctgtt gcaactacgg gactattttc tgttcctgta aaggcctgta aaaggggatc
     5521 tggttccc
//
LOCUS       DASPFX010000059         6653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1620467, whole genome shotgun sequence.
ACCESSION   DASPFX010000059 DASPFX010000000
VERSION     DASPFX010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6653
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620467"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VD694_01290"
     CDS             complement(<1..180)
                     /locus_tag="VD694_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11364.1"
                     /translation="MTEIRRVFEGLHTLYEIHLPKVHPKLIHDLMMRRRNEPDKDPFY
                     LIEVFTKPEINSEEMR"
     gene            292..753
                     /locus_tag="VD694_01295"
     CDS             292..753
                     /locus_tag="VD694_01295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11365.1"
                     /translation="MNANSSNDDIENLLFIMANLPDFLKISVCRKKVKELIEMTELEK
                     KETIARSLTSINLISQDKLVKLTKTWMKVICEIYPSELTKLLYSYLSILDEVKLFDKL
                     EGKLILDIFSSLEESERMKLLICLKEAVFLNPKRKEILKKIPADLIKVIIS"
     gene            complement(746..1000)
                     /locus_tag="VD694_01300"
     CDS             complement(746..1000)
                     /locus_tag="VD694_01300"
                     /inference="COORDINATES: protein motif:HMM:NF016265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+)-trafficking protein"
                     /protein_id="HXW11366.1"
                     /translation="MKCLKCGKEFEESEIEDPSSSKYPSCNDCWKEWTTYGVMVINEM
                     HLDMSLPEHRKALKKYERGFFGLDKVEEIKKNPENAGPSN"
     gene            1309..1977
                     /locus_tag="VD694_01305"
     CDS             1309..1977
                     /locus_tag="VD694_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HXW11367.1"
                     /translation="MSFSITEKHICILINLKSKYYYPYLFSFHFGMQLGLDFYSRHTA
                     IVARGLLGKKLVRLYEDGSGKLQRLSGIIYETEAYGSKNDPASHAFNGITNRNSVMFG
                     QVGKAYVYFIYGMHHCMNITARAPSSKAGAVLIRSVLPVEGIDIMIGFCNAKDELTMA
                     NGPGKLTKAMDINRSHNGINLIDRRSPLHIEEGIEPRKVISTPRIGISRATEKCWRYM
                     IVKE"
     gene            complement(2017..3741)
                     /locus_tag="VD694_01310"
     CDS             complement(2017..3741)
                     /locus_tag="VD694_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HXW11368.1"
                     /translation="MKYPKVVLTADRTLMSPYRGISLASFFGCAPAIDPNRSHNTLLY
                     KVLRNQVTPRLLFDFICNPISHHNGIADYAPYGLRKVEASLVRDGYSREDVVVAHPDY
                     VEKFIGPQTEVVGTYEMDPLGMGPVTMTFTYGRKQISYDEFYNRDLHMKINRAKERNG
                     SKAKVIAGASGTWQYNYDPAKIEEYGLYGIVEGDLGGIGPEIDGAGASFFDALINNEL
                     DTANPFKKNPFKVEIKEFEKSGNKYHGRFIHYWNEPTVDEIPTIINPSMHGMIEVMRG
                     CGRGCKFCDVTLRPLRYYPVEKVVKEIEINMKYGGLKNAWVHSDDIFVYGLNPRTTKN
                     MQPNREALEELFTGIMSTGIEHTNPTHGTLAGAIADERLIPNISKIIKASPDNMIGIQ
                     CGFETGSIRLIGKYADRKLSPFKPSEWHWVVKNGIKTLNENYWVPAFTLIMGLDNDET
                     VEDSWETIELIHSLETEQPDSKFTTTPLTFVPIGLLEKSDFFDIGNTMDAPKLGVMYK
                     TWQHNFKYGIQKFMHKVGRDNPIKNVFFAGLARTLGGVPLGAMERYARKRGPEHERVI
                     EKIKANYW"
     gene            complement(3812..4813)
                     /locus_tag="VD694_01315"
     CDS             complement(3812..4813)
                     /locus_tag="VD694_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HXW11369.1"
                     /translation="MAKLRRELDDNKHGKNVSSGKENEGFNVRKAGDASVVLVGLPSV
                     GKSTLLNALTNAKSRTGSYQFTTLTAVPGMMEYNGSKIQILDLPGIVEGASKGRGLGR
                     KVLSVARNADLVLMILDVFQPELLEMLERELHEVGIRINKKIPQVLIEKAHYGGIAIH
                     DQVSDIPDHIIKEILRINGINNGRIMIKEPNLTIEQLIDVVTGNRIYLPSLVVLNKID
                     LVDGKFISQIEKTVKDFIPISADRKTNIDDLKKLIYDKLALIRIYLKPKGDKIDEEPM
                     IMNQNCTIRDVCLKIHRNFVKDFKYAYVWGSSVKFSSQKVGLDHRLNDNDVLRIILK"
     gene            complement(5021..5539)
                     /locus_tag="VD694_01320"
     CDS             complement(5021..5539)
                     /locus_tag="VD694_01320"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HXW11370.1"
                     /translation="MLDERSRLPTVVKNIIVFALGILIFVSLYHYFETEFDNPLPIFV
                     IYGDTMSPTLKVNDLIIIGDGNMFNSTSVGEIIVFNKPAGEDRVIVHRISEITSENGR
                     RVIITKGDASPVSIPGVDFPINSQNFIGRVKFVIPEVGILFIPPMNYILLAGIVLAVG
                     ITLYIYGRRKAT"
     gene            complement(5709..6287)
                     /locus_tag="VD694_01325"
     CDS             complement(5709..6287)
                     /locus_tag="VD694_01325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11371.1"
                     /translation="MSILKRNEEVFTLGVITLCLAAMSGILIAPLAFAQTVAVTPAAQ
                     LSHTVSIQPNVTKPVYVPMNSNDYINGGITHSNSRNPADVIVNEEGSYLIVAAGQVGK
                     TSGSTTCNVDLWLSQNGEYVANSNTRASVNTANDTIVLVSQAIMPLKANDTINTVMSV
                     SATGQGCGLINTAPSNEPNIPAIIFSIIRIGN"
     gene            complement(6398..>6653)
                     /locus_tag="VD694_01330"
     CDS             complement(6398..>6653)
                     /locus_tag="VD694_01330"
                     /inference="COORDINATES: protein motif:HMM:NF024848.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="reverse transcriptase-like protein"
                     /protein_id="HXW11372.1"
                     /translation="RIKSDSILLVNQRSKKYKIRNTELKNISMEIANLEKLFDMVEYR
                     HIMRTENSHADYEANSAIDDYVKYQKMKVSNGSSEDSELF"
BASE COUNT         1950 a         1289 c         1109 g         2305 t
ORIGIN      
        1 tcgcatttct tcagaattga tctccggttt tgtaaaaact tcaatcaagt aaaacggatc
       61 tttatcaggt tcgtttcgtc ttcgcatcat aagatcatga atgagctttg gatgaacctt
      121 tggcaggtga atctcataca atgtatggag cccttcaaag actcttctta tttcagtcaa
      181 ttctgacaat tttgaactct attatattaa accattctaa ctataagagc ctttttgaca
      241 aggaacaaca aattaaatat gtaaacaaca aattgaatcg ggattttcta aatgaacgca
      301 aattctagca atgatgatat tgaaaactta ctctttatta tggccaatct tccagatttt
      361 ctaaagattt ccgtttgtcg aaaaaaagta aaggagttga ttgaaatgac agaattagaa
      421 aaaaaagaga ctattgctag aagtttaaca tccatcaatt taattagtca agacaaatta
      481 gttaagttga caaagacttg gatgaaggtt atctgtgaga tatatccgag tgaactgaca
      541 aaattactat acagctatct ctcgatttta gatgaagtca agctatttga caagttagaa
      601 ggaaaattga tacttgatat tttttcttca ctggaagaga gtgaacggat gaaactcttg
      661 atttgtttaa aagaagcagt atttcttaat cctaaaagga aggagatttt gaaaaaaatt
      721 cctgcagatc ttattaaagt tataatcagt tagatggccc tgcattttca ggattctttt
      781 ttatctcttc aaccttatcc aaaccaaaga aacccctttc gtatttcttt aaggcttttc
      841 tgtgttctgg taatgacata tcaagatgca tttcattaat taccatgacg ccataagtag
      901 tccattcctt ccagcagtca ttgcaagatg gatactttga tgaagatgga tcctcaattt
      961 cgctttcttc aaattctttg ccacatttta agcatttcat ttacagtgat gatacattaa
     1021 gcatatttta ttgttttatc cctgcagacc taaaacggat acctttcatc atttcttata
     1081 accgtgattc ttctttatgt ggtcgcgcat tatttccatt ccttcgaact tcatattaca
     1141 ctgtttacat tcgtatgttt tgttatcatg agtaatctga aagtgttgca ttaattgctc
     1201 taaagtcctg aaaccctttc cacaaaactc acatttgttt ttctttaaaa ggtgaaaatt
     1261 gttgaatttt atcatgccaa gatattggta tttttagtat ttatgttaat gtcattttca
     1321 ataacagaaa agcacatatg catattgata aacttgaaat caaaatatta ttatccttat
     1381 ttattttcat ttcattttgg gatgcaacta gggcttgatt tctattcaag acatactgca
     1441 attgtagcaa gaggtctgct aggaaagaaa ctagtccggt tgtatgaaga tggttctggt
     1501 aagctacaac gactatcagg tattatatat gaaacagagg catatggttc taaaaatgat
     1561 ccggccagcc atgcatttaa tggaataacc aatagaaatt cagtaatgtt tggacaagtt
     1621 ggtaaagcat atgtttattt tatttatgga atgcatcatt gcatgaatat taccgcgcgg
     1681 gctcccagta gcaaagcagg tgcagtattg attagatcag tgttaccagt tgaaggaatc
     1741 gatatcatga ttggtttttg taatgcgaaa gatgaattga ctatggcaaa tggtcctggt
     1801 aagttgacaa aggctatgga tattaataga tcgcataacg gcattaattt gatagaccgc
     1861 agatcgccat tacatattga ggagggtatc gaaccaagaa aggtaatctc tactcctaga
     1921 ataggaatta gtagagccac tgaaaaatgt tggcgatata tgatcgtaaa ggaataatgg
     1981 ggtggttgtt cctgatctca ggaatgtttg gtaaaattac caatagttgg cttttatctt
     2041 ctcgattact ctttcgtgtt cagggcctct ctttctggcg tatctttcca ttgctcccaa
     2101 cggaactccc cctagcgttc ttgcaagacc cgcaaagaag acattcttta ttggattatc
     2161 gcgtcccacc ttatgcataa atttctgaat accgtatttg aaattatgtt gccatgtttt
     2221 gtacattact cctaatttgg gtgcatccat ggtatttcca atatcaaaga aatcggattt
     2281 ttcaagtaag cctattggga caaatgttaa tggagttgtc gtaaatttgg aatcgggctg
     2341 ttcagtttcc aaagagtgaa tcaattcgat cgtctcccaa ctatcttcaa cagtttcatc
     2401 attatccaat cccataatta gtgtaaatgc agggacccag tagttttcat ttagcgtctt
     2461 tattccattt ttgacaaccc aatgccattc ggaaggcttg aacggtgata atttcctgtc
     2521 cgcatatttt ccaattaatc ttatacttcc tgtttcaaat ccacactgaa taccaatcat
     2581 gttatctgga gatgccttga ttattttaga aatattggga atcaagcgct catctgcaat
     2641 agctcccgca agtgttccgt gagtgggatt agtatgttct attccagtgg acattattcc
     2701 agtaaacagc tcttcaagag cttctctatt tggctgcata ttcttggtag ttctaggatt
     2761 caaaccatat acgaatatat catcactgtg cacccacgca ttttttaatc ctccatactt
     2821 catgttgatt tctatttctt ttacaacctt ctctacagga tagtatctta atggcctaag
     2881 cgttacatca cagaacttgc atccgcgtcc acaacccctc attacctcaa tcattccatg
     2941 catactaggg ttgataatgg ttggaatttc atctacggta ggttcattcc aataatgaat
     3001 aaaccgacca tgatacttat taccactttt ttcaaattct tttatctcaa ctttaaatgg
     3061 atttttctta aatggatttg cagtatccaa ttcgttattg ataagcgcat caaagaacga
     3121 tgcaccagct ccatcaattt cggggcctat tccacccaaa tctccttcta caatcccgta
     3181 taatccatat tcttctattt ttgctggatc ataattatac tgccatgttc cagaagcccc
     3241 agcaattact tttgccttac tgccatttct ctcttttgct ctgtttattt tcatatggag
     3301 atctctgtta tagaattcat catatgaaat ctgctttcga ccatacgtaa atgtcatagt
     3361 tactggaccc ataccaagtg gatccatttc atatgtccct acaacttctg tttgagggcc
     3421 gatgaacttt tcaacgtagt ctggatgtgc aaccaccacg tcttctctgc tatagccatc
     3481 tcttactagg gaagcttcaa cctttctcaa accatatggt gcataatctg cgataccatt
     3541 atggtgtgat atgggattgc agatgaaatc aaataacagc cttggcgtaa cctgatttcg
     3601 aagtaccttg taaagcaatg tattatgcga tctatttgga tctatagctg gtgcacagcc
     3661 aaaaaatgaa gctaacgata ttcctctata tggtgacata agagtgcgat ctgcggtaag
     3721 aacaaccttt ggatatttca agagtccctt atacatacgt ttaaaccgta gattttaagt
     3781 tttccaatta tgaaagttga tttagaaaat cttactttaa aataatcctc agtacgtcat
     3841 tgtcattcag cctgtgatcc aatcctactt tttgggaact aaactttaca ctactccccc
     3901 aaacataggc atacttaaag tccttcacaa agttcctgtg aatttttaga caaacatcac
     3961 ggatagtgca attttggttc ataatcatcg gttcttcatc aattttgtca cctttaggtt
     4021 ttaggtaaat tctgattaaa gctagtttat catatatcaa cttcttcaaa tcgtcgatgt
     4081 ttgtttttcg atccgcagaa atgggaataa aatctttgac cgttttttca atttgggaga
     4141 taaatttacc atcaactaga tcgattttat ttaacactac gagtgaaggg aggtagatcc
     4201 tatttcctgt aactacatct atcaactgtt ctatggtaag atttggttcc ttgatcatta
     4261 ttcgaccatt gttaatacca ttaattctca gaatttcctt gattatgtga tcaggaatat
     4321 cagagacctg atcgtgaatc gcgattcctc cataatgcgc cttttcgatc aacacttgtg
     4381 gaattttctt gttgattcta ataccaactt catgaagctc tcgttctaac atttcgagaa
     4441 gctctggttg aaaaacatcc aatatcatta aaactaaatc cgcatttctt gctactgaaa
     4501 gaactttcct gcctagtcct ctacccttgg aggcaccttc cacaatgcct ggaagatcaa
     4561 gaatttgaat tttagatcca ttgtattcca tcattcctgg cactgctgta agagttgtaa
     4621 attgatacga accagtacgc gatttcgcat ttgttagtgc attgagtaaa gtagatttac
     4681 ctacactggg taatcccact agaactactg acgcatcacc tgcttttcta acattaaagc
     4741 cttcattttc ctttcccgat gaaacattct taccatgttt gttatcatca agttcgcgtc
     4801 gcagtttggc cattttggct ttaagaattc cgatatgaaa ttctgttgct ttatttattt
     4861 gagtcctatg gatctcttct tgtatagctt taattttttc aggaattccc agggataatg
     4921 ccccctagtg taattttttc attcattcga taaatatctt tgttcataat tcatctttaa
     4981 aacttactta attgattgat atcttttgaa tttctaattc ctatgttgcc ttccttcttc
     5041 cgtatatgta aagggtgatt cctactgcca atactattcc tgcaagcaga atgtaattca
     5101 tgggtgggat gaatagaatc ccaacttctg gaataacaaa cttgactcta ccaataaaat
     5161 tttgactatt tatggggaaa tcaactcctg gtattgatac tgggctagca tccccttttg
     5221 ttattattac tcttcttcca ttttctgatg tgatttcgga tattcgatgt actatcaccc
     5281 tgtcttcacc ggccggttta ttgaatacaa taatttctcc tacactagtg ctattgaaca
     5341 tatttccatc cccgattatt atcaaatcat ttaccttcag ggtaggactc atcgtatctc
     5401 cataaattac aaagataggc aacgggttat caaactcggt ttcgaaataa tggtaaagtg
     5461 aaacaaatat caagattcct agggcaaaaa caataatgtt ttttacaacc gtaggaagac
     5521 gtgatctttc atccagcaag tcatcaaaaa ttatttatgt agattagata aatctttaga
     5581 attttggtat ttaaactcta agagccctat tccagcaacg gcagcattaa gggccattgc
     5641 taaaagaatg aaatcagggc tctacaaagt ttgtttgcta cctatcctat gctagatgga
     5701 ccgacctatc aattacctat ccttatgata gagaatatga tagcaggaat attgggctca
     5761 ttagatggtg cggtatttat gagaccgcac ccttgaccgg tagcagatac tgacattact
     5821 gtatttatgg tatcattcgc cttcaatggc ataattgctt gtgatacgag gacaatggta
     5881 tcattagctg tattgactga agcgcgagtg ttactattcg ctacatattc accattttga
     5941 ctaagccaca agtcaacatt acaagttgta ctgcctgaag tctttcccac ctgacctgct
     6001 gctacgatta gataagatcc ttcttcattg acaatcacat cagctgggtt tctagagtta
     6061 ctatgtgtaa tacctccatt gatgtaatca tttgagttca taggaacata tactggctta
     6121 gtaacatttg gttggattga tacggtatgc gataattgtg ctgctggtgt aactgcaacc
     6181 gtttgcgcaa atgctagcgg tgcaattagt atccccgaca tagcggctaa acacaaagta
     6241 atcacgccta aggtaaacac ttcttcattt cttttgagta tggacattcc caaagctaac
     6301 aagaacttct ttataaggtt attccaggct aaacctctgg atattcataa cattttggca
     6361 gctcagtcta atgccttatc atcatatcat ataatagtta gaataactct gagtcttcac
     6421 tgctgccatt acttactttc attttttgat atttaacgta atcgtctatt gcagagtttg
     6481 cttcataatc agcatgactg ttttccgttc tcattatatg tctgtattct accatatcaa
     6541 ataatttctc aaggtttgca atttccattg aaatattctt caattccgta tttcttatct
     6601 tgtatttttt tgatctttga ttaactaaca atatgctatc ggattttatt cta
//
LOCUS       DASPFX010000060         4586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1194077, whole genome shotgun sequence.
ACCESSION   DASPFX010000060 DASPFX010000000
VERSION     DASPFX010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4586
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194077"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..216)
                     /locus_tag="VD694_01335"
     CDS             complement(<1..216)
                     /locus_tag="VD694_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11373.1"
                     /translation="MRPARRANTWLKNNEGNWRDTACPCGSNFHFSGDIDELFSWERI
                     HLRHMTSDPENHAMLSLYPTDMVIFYHS"
     gene            complement(294..2162)
                     /locus_tag="VD694_01340"
     CDS             complement(294..2162)
                     /locus_tag="VD694_01340"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HXW11374.1"
                     /translation="MLPIELLRVNISSKMNHVRPVFCNHENELSLPSKIIKMYEEMAE
                     KKVSKTTVDQNILRMEDKHSDYKFVRGICHLLEQRCVYSSYVLPYSKSTGNGNTNTNN
                     AIYLRRDIFEESSRSGYPVTENERSNILQKIALKNDLTIEDLELAMWSDLDRNKYLKS
                     FDSLTSLQLVAWYNLSILQTLLLNCVKLEFSVSGGYNWKKILHKIKQLGLMYFLYGET
                     SPGSSTDNQAKNQNILFGNDNSKKIICAVDGPLSILRSTDRHGLAMAKLIPLIIFTDS
                     WSINAIILRKSMSGTKKTYNFRLSNNDDDLPIFDASEIPNSRSQSESNSNIESSLGNA
                     DDLFDSNVEKNFMNKFLTFSTNWKLSREPDPLILTDGKAFIPDFLFEKSGIRVYFEIV
                     GFWTTDYLKRKLEKIKDLSTNIATSLDIDLLIAANKDNYISENGDKIGIDSIFSKFID
                     KKQLIFYKKDEIPFGRIIKYLKELDSKIIDDITAKLHDKIIREIERIIEDNQNKIVFL
                     EQIANKYDIPVESVLKTVRDIQLNNNKPSKEATINRLDNFLLIDNYMISDDKISKLLP
                     ELDKISKLQDAVDFLSKNGIPEDCITLLIPKIGFEIIWNGIDSNNASIQRQTKNGF"
     gene            2362..3543
                     /gene="radA"
                     /locus_tag="VD694_01345"
     CDS             2362..3543
                     /gene="radA"
                     /locus_tag="VD694_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HXW11375.1"
                     /translation="MRTKKSTYSNSHIQEEKQDESENITENYSNDTVDKHDQSEKEDN
                     DNIVMNTESSLTTLSEQSHINDLTALEIQDIEGIGPTTAKKLREAGIFSVMDLAVAGV
                     EDLAVDINASKESAASFIMAAQKLLRESDVLDKEFITADTALKKRRSLLRCSTGSSML
                     DDLFLGGIETQAVTELYGEFGSGKSQICHTMCITAGQPIGSGGLNSGVIYIDTEGTFR
                     PERLEQISSSRNIDPVNALQNVAVCKVYNSAHLELIVKNLGKYIDDYKAKLVIVDSII
                     SLHRAEFSGRGTLADRQQRLNTIMHKLLRISEIYNIAVIVTNQVQSAPDTFFGDPTKP
                     TGGNVIGHASTYRVYLRKSGENRVAKMIDSPYHPYSEVRFTVNEKGTDNVDEGKKSKK
                     E"
     gene            complement(3855..4067)
                     /locus_tag="VD694_01350"
     CDS             complement(3855..4067)
                     /locus_tag="VD694_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin family protein"
                     /protein_id="HXW11376.1"
                     /translation="MTHHIAKIIEIIGSSDKGWEDAAQVAVDEAKKTLHGIHGIEVVD
                     MTARVDPTSGKITNYRTCVKISFAVD"
     gene            4196..>4586
                     /locus_tag="VD694_01355"
     CDS             4196..>4586
                     /locus_tag="VD694_01355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11377.1"
                     /translation="MIQHKNRKTRVSKFPILLLIIITLVVFTSTQLIPKLEVYAYGPN
                     EIVKILSEGGQICPLESECDKKKENQTDAHNMTLNIPGEANPNSEQNSMDNSIANYSN
                     SSQYETNIANDTLLTGGTNNSNQDMVDI"
BASE COUNT         1507 a          811 c          755 g         1513 t
ORIGIN      
        1 agaatggtaa aaaataacca tatccgttgg atagagtgaa agcattgcat ggttctcagg
       61 atctgatgtc atgtgtctta gatgtatccg ttcccatgag aataactcat caatatctcc
      121 actaaagtgg aaattactac cacatggaca agctgtatct ctccaatttc cttcattatt
      181 tttaagccat gtgtttgctc ttctggcagg tcgcaatacc ccaagtatat gacgccctca
      241 acatatatac tatttctcta cccagcattt tgaacatgaa taaatcaatt attctagaat
      301 ccgttttttg tctgtctttg tattgatgca ttattagaat caataccatt ccaaataatc
      361 tcaaatccga tttttggaat aagcaaagta atgcagtcct cggggatacc attcttgctc
      421 aagaaatcaa ctgcatcctg caacttgcta attttatcaa gttctggtaa caacttgcta
      481 attttatcat cggatatcat ataattatct attaacagga aattgtctaa tcggtttatt
      541 gttgcctctt ttgagggctt attattgttt aattgaatat cccttactgt ttttagtact
      601 gattcgactg gaatgtcgta tttgtttgca atttgttcga gaaagacaat cttattttga
      661 ttgtcttcaa taattctttc tatctctcta ataattttat catgtaattt agctgtaata
      721 tcatcaataa tcttggagtc taattctttc aaatatttga ttattcgacc aaatggaatc
      781 tcatcttttt tgtaaaatat taactgtttt ttgtctataa actttgaaaa aattgagtca
      841 atccctatct tgtctccatt ttcagaaata tagttgtcct tgttagcagc tattagtaaa
      901 tcaatatcaa gtgatgtagc gatatttgtg ctcaagtctt ttattttttc taattttcgc
      961 ttcaaataat cagtcgtcca aaaacctact atctcaaaat acactctaat tccagacttt
     1021 tcaaaaagaa aatctggtat gaatgcctta ccatctgtta gaatcaatgg atcgggttcc
     1081 ctcgacaatt tccaattggt agaaaatgta agaaatttat tcataaagtt cttttcaaca
     1141 ttactatcaa acagatcatc tgcattacca agcgatgatt caatattaga attagattct
     1201 gattgagaac gagaatttgg aatctctgat gcatcaaata tgggaagatc atcatcatta
     1261 tttgagagtc taaagttata ggtcttcttt gttcccgaca tagactttct taatattatt
     1321 gcattaatgg accaactatc ggtaaatatt attaatggaa taagcttggc cattgccaaa
     1381 ccatgtctat cagttgatct caatatgcta agcggaccat ctactgcgca tatgattttc
     1441 ttggaattat cattcccaaa taagatattt tgattttttg cctgattatc tgttgatgat
     1501 ccgggactgg tttcaccata gagaaagtac atcaatccta gttgttttat tttgtgtaaa
     1561 attttcttcc agttataacc accggaaaca ctgaattcta atttaacgca attaagtaat
     1621 agcgtttgca gaatggaaag attataccat gcgaccaatt gtaacgaagt taatgaatca
     1681 aagcttttca agtatttgtt cctatcaaga tcactccaca tagccagctc caggtcttcg
     1741 atagtgagat cgttttttaa agcaattttt tgaagtatat tacttctctc attttcagtt
     1801 actggataac cactccgaga agattcttca aatatgtctc ttctcagata tattgcattg
     1861 tttgtattag tgttaccatt accagtactt ttagaatagg ggagcacata cgatgaatat
     1921 acacatcttt gttccaaaag gtgacaaata cctctgacaa atttgtagtc actgtgttta
     1981 tcttccattc ttaggatatt ttgatcaacg gttgttttgg atactttttt ctcggccatt
     2041 tcctcataca tcttgattat ttttgagggc aaagaaagtt cattctcatg gttacagaat
     2101 acaggcctta catgattcat tttgcttgat atgtttactc tcaataattc gattggcaac
     2161 atttacaatt attacctcat atgatgatac atgtagacct tggtattttc tacctaaata
     2221 atttttattc caatattgtt ttcagtttaa tttatgggac tttggtcatc tttgattgct
     2281 atactgcaat ctgcaatgac ccacccactc ccctatcagt gtgtcaagcc ttaaatgcaa
     2341 tagacctaca tgatatatag aatgagaact aaaaaatcga cttattcaaa ttctcacata
     2401 caggaagaaa aacaagacga gtctgaaaat attaccgaga attatagtaa tgataccgta
     2461 gataaacacg accaatcaga aaaagaagat aatgacaata tcgtcatgaa tactgaatca
     2521 tcgctaacta cattatcaga acaatctcat attaatgatc ttactgctct tgaaattcaa
     2581 gacattgaag gaattggccc tacaactgca aaaaaactta gagaagcagg aattttttca
     2641 gttatggacc ttgctgtggc tggagttgaa gatctagcag tagatattaa cgcatccaaa
     2701 gaaagcgccg cttcattcat tatggcagca caaaaactat taagagaatc agatgttctt
     2761 gacaaggaat tcattactgc tgatactgca cttaagaaaa gaagatcgtt gctacgatgt
     2821 tctactggtt caagtatgct agacgattta ttcttgggag gtatagagac gcaggcagta
     2881 actgagcttt atggggaatt tggttcgggc aaatcgcaaa tatgccacac aatgtgcatt
     2941 actgctggac agccaatagg atcaggtgga ttaaacagtg gtgttatcta tatcgatact
     3001 gaagggacat ttagacctga aaggctggaa caaatatcta gtagtagaaa catagatccg
     3061 gtaaatgcat tacaaaatgt agcagtatgt aaagtctaca atagtgcaca tttggagttg
     3121 atagttaaaa atcttggaaa atatatagat gattataaag caaaactggt tattgtcgat
     3181 agtataattt cattacaccg agcagaattc tctggtagag gaacgcttgc tgatagacag
     3241 caaagactta atactattat gcacaaactt cttcgaatat cagaaattta taatattgca
     3301 gtaattgtta caaatcaggt gcaatctgct ccagatacat tctttggtga tccaacaaaa
     3361 ccaaccggtg gaaatgtaat tggtcacgct tcaacttata gagtgtattt aagaaaatct
     3421 ggtgaaaaca gggtagcaaa aatgattgac tctccatacc atccatatag cgaagtaagg
     3481 tttaccgtca atgaaaaggg aacagataac gtggatgaag gcaaaaaatc caagaaagaa
     3541 taatcccatc tttatttttt gtaattgatg tgaaaatatt tgaacgaaag tacaggcatt
     3601 acattctaga cataatcatt agaacaactt agctatgttc aggtttatgt ttatctttag
     3661 tgttctaaat attttgattt attttcaaat gccttattga atttactgga caagataagt
     3721 tcatcatctt cacaccagtg tcaatctatc gaattcaatc gcttaccggt cttagaattt
     3781 actgtatgtg tgtagattaa gcaattgtaa tattcatact aacttggcaa cctaccaagc
     3841 ttacaaatgt aaagctagtc tacggcgaag gatattttta cacaggttcg atagttcgtt
     3901 atttttccag aggtcgggtc tacacgagca gtcatatcaa caacttcaat tccatgtata
     3961 ccatgcaagg tcttctttgc ttcatctacc gcaacttgag ctgcatcttc ccatccctta
     4021 tccgagcttc cgattatttc gattatcttt gcaatatgat gagtcatgac gagataatgc
     4081 accgcatatg ttataagact tgtgataaaa ttctaaccaa gcaaggaatt gctggacaag
     4141 agagaacttt caatcggaaa gcaacaatta aaaataatgt ttactacatc ttaacatgat
     4201 tcaacacaag aataggaaaa cgagagtttc aaagtttcct attttgctgt taattattat
     4261 tacattggta gtattcacat caactcaatt aatccctaag ttagaagttt atgcctatgg
     4321 tcctaatgaa attgttaaga tattatctga aggtggacaa atatgcccat tagaatctga
     4381 gtgcgacaaa aagaaggaaa atcagacaga cgctcacaat atgacactga acattccagg
     4441 cgaagcaaat ccaaatagtg aacaaaattc aatggataac tcaatagcaa actattcaaa
     4501 cagttcgcaa tatgaaacca atattgctaa cgataccttg cttactgggg gaaccaacaa
     4561 ttcaaatcaa gacatggtag acatta
//
LOCUS       DASPFX010000061         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_755302, whole genome shotgun sequence.
ACCESSION   DASPFX010000061 DASPFX010000000
VERSION     DASPFX010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_755302"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..566)
                     /locus_tag="VD694_01360"
     CDS             complement(<1..566)
                     /locus_tag="VD694_01360"
                     /inference="COORDINATES: protein motif:HMM:NF020031.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HXW11378.1"
                     /translation="MKLLEYQGKELFAEYDIAVPKSYLAKNESELNQIAGKLQFPVVL
                     KSQLTVGGRGKAGAILKCTKMEDLVPKFAELMNKEVKGELPKVILIEEAVNIDKELYF
                     SLFLNRGKRTYSLISSAQGGMDIESVENKVIQDISVTGLTQSDAESVAKRLNLEGVTA
                     RSFSNIVIKLAKLVREKEAELAEINPLA"
     gene            660..827
                     /locus_tag="VD694_01365"
     CDS             660..827
                     /locus_tag="VD694_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11379.1"
                     /translation="MAEKMTAVWLILLTIIACAAIPAVMIWLTTTPTSSAPHMLLGIA
                     EFSSTGNLLNF"
     gene            971..>2116
                     /locus_tag="VD694_01370"
     CDS             971..>2116
                     /locus_tag="VD694_01370"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HXW11380.1"
                     /translation="MAIALKVHPSFFKEFATKTWVSPADVVKELVENAFDEDATRVLI
                     TILSDNSISIEDNAGMDENEIQKFLLLGSPHKKVDSVSPKLKRIRTGRYGTGRLSFLT
                     SFEKMKIRTRKGNYHKSFLIDTRSLDDLFRGTSNLREIRESRLSRDGTEIIVSDAKSY
                     VDELRLVKEIRKLAVLRHPLFEVHIKRSPRFKEWSFTNAQLIRVPDIQGHRIPLNLDK
                     GNIVGEITVARRPLTEDERGIAVMVGGHIVMRTLFGFDSKIPRVTGFVRCDTLTSRFA
                     DKSAIIEDTEFERFSGEMKKFILDTVIPSLTLYEDVLVTREESKIYKQIDKVLGQAVI
                     ETLEPSEEIEGYEIVETKKIVSKPTSKSSSIPSEDNLFDKSIDDEYKD"
BASE COUNT          674 a          388 c          398 g          656 t
ORIGIN      
        1 attgccaaag gattaatctc tgccaactct gcctcctttt ctctgacaag tttagctaat
       61 tttatcacaa tattcgaaaa tgacctggca gttaccccct caaggtttag tcttttggcc
      121 acgctttctg catctgattg cgtcaatccg gtaacagaga tatcctgaat taccttgttc
      181 tcaacgcttt caatatccat tcccccttga gcagaagaaa ttaatgagta tgtcctcttt
      241 cctctgttta ggaacaacga aaagtaaagc tccttgtcta tgtttactgc ttcttcaatt
      301 aagatcacct ttggaagctc tccttttacc tccttattca ttaattctgc aaactttggt
      361 actaggtctt ccattttcgt gcattttaat atcgccccag ccttccccct gccaccaaca
      421 gtcaattgag acttaagtac aacagggaat tgtaatttgc ctgcaatttg gttcaattcg
      481 gattcgtttt tagcaagata tgattttgga accgctatat catattctgc aaataattct
      541 ttaccctgat attctagtaa cttcattcag caagaatttg aagcctatgt ggcgacttat
      601 attcctatac aagttgcata atttgaaaat ttatatatct tttattaaat tcgtatggta
      661 tggctgaaaa aatgactgcg gtgtggctta tcttgttaac aataattgcg tgtgcagcta
      721 tacctgccgt tatgatttgg ttgacaacga cacccactag ttctgcacct cacatgttgc
      781 ttggcatcgc cgaattttcg tcaacgggta atctgctaaa tttttgacat aataatagca
      841 tcctcaattt tttgtgtcaa atgattgaag tttgcttcaa ttatttttct tatttgggaa
      901 ggaatattta gcgatggaca aaaatttaac cgagtaatag ataaaggtga gagattgaag
      961 catattaacc atggcaatcg ctctaaaggt gcacccatct ttctttaagg aatttgctac
     1021 aaagacatgg gtttcccctg cagatgtcgt taaggaattg gttgaaaatg ccttcgatga
     1081 ggatgcaaca agagttctga taaccattct ttctgataac tccatttcaa ttgaagataa
     1141 tgctggaatg gatgaaaacg agattcagaa attcttgctt ttaggttcac cccataagaa
     1201 agtagattct gtttcaccca agttaaaaag aattagaaca ggaagatatg gaactggaag
     1261 actatctttt ttgacatcat ttgaaaaaat gaaaattaga acccgaaagg gtaactatca
     1321 caaatcattt ctaatcgata cgagatcatt agatgatcta tttagaggta catccaattt
     1381 acgcgaaatc agggaatcac gtttgtcgag ggatggaact gagataatcg taagtgatgc
     1441 caaatcatat gtcgatgaat tgagactggt aaaggaaatt agaaaattgg cagtgcttag
     1501 gcatcccctt tttgaggtgc acatcaaaag atcaccaaga ttcaaagaat ggagtttcac
     1561 taatgctcag ttgataagag ttcctgatat acagggtcat agaataccgt tgaaccttga
     1621 caagggaaat attgttggtg aaattactgt agctcgcaga cccctaactg aagacgaaag
     1681 aggaattgca gttatggttg gtgggcatat agtcatgagg acgttatttg gatttgactc
     1741 caaaatacct agagtgaccg gatttgtaag atgtgataca ctcacatcca gattcgcaga
     1801 taaatcagct attatagagg acacggaatt tgaaagattt tctggcgaga tgaaaaagtt
     1861 cattctcgat acagtcatcc caagtcttac actttatgaa gatgtacttg tgactcgaga
     1921 agagtcaaag atctacaaac agatagataa agttcttggc caggccgtaa ttgaaacctt
     1981 agaaccttct gaagaaatag aaggatatga aatagttgaa accaaaaaaa tagtatcaaa
     2041 acctacaagt aagtcatcat ccattccatc ggaagataat ttatttgaca aatcaataga
     2101 tgatgaatat aaagac
//
LOCUS       DASPFX010000062         3489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1565, whole genome shotgun sequence.
ACCESSION   DASPFX010000062 DASPFX010000000
VERSION     DASPFX010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3489
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1565"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VD694_01375"
     CDS             <1..218
                     /locus_tag="VD694_01375"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HXW11381.1"
                     /translation="FFARGLIDMYIDLRGKIRVTDMAAGYLISKEAGGLLFNPKGEPL
                     DSDFSLDNRLSFIAVNNREFLQLLQST"
     gene            complement(232..334)
                     /locus_tag="VD694_01380"
     tRNA            complement(join(232..291,320..334))
                     /locus_tag="VD694_01380"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(268..270),aa:Asp,seq:gtc)
     gene            507..593
                     /locus_tag="VD694_01385"
     tRNA            join(507..544,558..593)
                     /locus_tag="VD694_01385"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:541..543,aa:Lys,seq:ttt)
     gene            complement(915..1508)
                     /locus_tag="VD694_01390"
     CDS             complement(915..1508)
                     /locus_tag="VD694_01390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11382.1"
                     /translation="MSSTKKDQTAPISTSSFQQQQQQQAERLQESTQRMFDETKHNIQ
                     NSLEEARNQIPRYNQAIYNYQEQVVNATGEIATSYIDAQNAIILAFNASVTPYFENIQ
                     NTYRQYYSINPQNVQEFYSQTISNIANNSVTVVRLVNNTIFTNFDLLKTSWQQATDNV
                     KEISRVTTNTARAFGQTSNKEVSSAVANNAAPSSSIA"
     gene            complement(1655..2509)
                     /locus_tag="VD694_01395"
     CDS             complement(1655..2509)
                     /locus_tag="VD694_01395"
                     /inference="COORDINATES: protein motif:HMM:TIGR04178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase/archaeosortase family protein"
                     /protein_id="HXW11383.1"
                     /translation="MILIIIEIVGSHPAITGRKISLLITFAILTGLYFFSLSLGTSYL
                     LLDMGRSVGALISESWMLMWDYIILAIYFGITLVLIFGTKEWLRIGGAATLFLVGYVT
                     ILLLDSLFPYDTLGILQYLVPTYLHFNVEILNSIIHFLNLQTGFTSQAFGNTLVLYSP
                     DGPFVMKVYWPSAGIHSIVIFGLVMFAFLLKTVIPWKRTLIYLFSGIILTCIVNCIRI
                     TLLSLYALNPNSDLGSWEQFHSVIGEMVFIPWVLFYLAVVIYLENRYYKTRRDLSLHG
                     NSCSSKGS"
     gene            complement(2806..3411)
                     /locus_tag="VD694_01400"
     CDS             complement(2806..3411)
                     /locus_tag="VD694_01400"
                     /inference="COORDINATES: protein motif:HMM:NF014056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF99 family protein"
                     /protein_id="HXW11384.1"
                     /translation="MEFSEKRQKRIHPEKKGVRVFGVAESFKKNSTFSTLCGVVLRRD
                     MQVDGVVLGRTLVGGDDATKQIISMFRKLDRNDVNCIMINGLIISLYNVVVGGKILET
                     TGIPVIGVTYQDSLGIEDRFFDNFSKSEATKRVEEYRKLGNREHFTLKTGMTVYVRSW
                     GISSPKTLHILNSFIIQGKIPEPLRIARLISRAARTFPVEE"
BASE COUNT         1051 a          699 c          682 g         1057 t
ORIGIN      
        1 gtttttttgc acgaggtcta attgacatgt atatcgatct tcgaggtaaa attagagtaa
       61 cagatatggc tgctggttat ttaatttcaa aggaggcggg aggcttatta ttcaatccta
      121 aaggcgaacc tcttgactcc gatttctctc tcgataatag attatccttt attgccgtta
      181 ataacagaga atttttacaa ctcttgcaat caacttaata aaggtgttaa gcgcccgggc
      241 cgggattcga acccgggtcg aaggagtgac agtcccccat actagaccgg actttacaga
      301 gcttatgaac agagctcttc tatactaccc gggcgcgcaa actcaagcag tgaatctaaa
      361 atactaatta aaaacgtttt gcttgttgca tcctagtttg aaagaataga attcaggtta
      421 ctgaggtgat ccgtagtgat attcagatcg caagttctct ttagtatatg attaaattat
      481 agccatgcaa agcctaactg taaggtgggc ccgtagctca gccaggtaga gtaccggact
      541 tttaacacaa gaaagaaatc cggctgtctc gggttcgaat cccgacgggc ccgctgcaag
      601 attgacgttc tgaataggcc cagccatatt attcttcatt caattagatg gaaataccac
      661 tattcgatag tgactcgttg gacgaaatcg aacggcgttt tggacgtcag ccgaacaccc
      721 cataaggtaa atctttctga atattttgaa cgtttaaaac gttcatttac aatcgctaag
      781 gggaactggc tggttttgga catacacata agctctcaca atcgaaatac agaagtcgct
      841 aagtacgaga attgctattg tacagaaatt gatcgaccgc tgatagcagt gactgggtga
      901 agactacccc tctattatgc gattgaagaa gatggtgctg cattgtttgc gaccgctgaa
      961 gagacctctt tgttactagt ctgtccaaat gctctagcag tatttgtagt aacccttgat
     1021 atttctttga cgttatctgt agcttgttgc catgatgtct tgagcaaatc aaagtttgtg
     1081 aatattgtgt tatttaccag tctaacaaca gttacgctat tgtttgcaat gttgctaatg
     1141 gtttgagaat agaactcttg gacattttgt ggatttatgc tgtagtattg tcgatatgta
     1201 ttttgaatat tttcaaagta tggagtaact gaagcattaa acgcaagtat gatagcattc
     1261 tgagcgtcaa tataactggt tgcaatttct cctgtagcat tcacaacctg ttcttgatag
     1321 ttgtaaattg cttgattata gcgaggaatt tgattacgtg cttcttctaa cgaattctgt
     1381 atattgtgct tggtttcatc aaacattctc tgagtacttt cttggagacg ttcggcttgt
     1441 tgttgttgct gttgctgaaa agatgatgtc gatattggcg ctgtttgatc tttctttgtt
     1501 gaagacatgt ctctaattca ccgccctcca tatataaact atggcgttac ataccattca
     1561 caaccattat aggacataga tatccatcaa gtgtaatgcc attcacaagc tgctatagac
     1621 gtgacaaagg atcttattgg gaaaaaaggg gtggttaact acctttgctg gagcaactat
     1681 tgccatgtaa acttagatcc cttcttgttt tatagtagcg attttctaag taaatgacaa
     1741 cagctaagta aaaaagcacc catgggataa acaccatttc accgatgacc gaatggaact
     1801 gttcccaact acctaagtct gaattcggat ttaaggcgta aagagaaagc aatgtaattc
     1861 gtatacaatt tactatgcaa gtcaatatta ttcctgaaaa tagataaatc aatgttctct
     1921 tccatggaat gacggtctta agtagaaatg caaacattac taagccaaag ataacgatac
     1981 tgtgaattcc tgcagagggc cagtatacct tcatcacgaa agggccgtcc ggactatata
     2041 gcaccaacgt gttaccaaag gcttgcgaag taaaccccgt ttggagattc aggaagtgga
     2101 taattgaatt gaggatttct acgttaaaat ggaggtaggt tggaaccaaa tattgaagaa
     2161 ttcccaaggt gtcgtatgga aacagagaat caagaagaag gattgtaaca tagccaacta
     2221 gaaatagggt agcagctcct ccgattcgta accactcttt tgttccgaag atcaagacaa
     2281 gggttattcc aaaataaatt gctaggatga tgtaatccca cattaacatc cagctctcgc
     2341 ttattagcgc tccaactgat cttcccatat ctagaagcaa atatgaagtg ccgagagata
     2401 gactgaagaa atataatcca gtcaaaattg cgaaagtgat gagcaaactt attttccgac
     2461 ctgtaatagc aggatgtgac ccaacgattt caattataat aagaatcatt acaatcaaga
     2521 aacctcctct tccctcgttc catgagaatc caaacgtttc tgaaaaaaga acatacgaaa
     2581 gcagaactgg ccaaagtaat ataataataa taacagactg gttatacctg gttgaaataa
     2641 gccctgtaca gtaagttttt accaggttga atttcatctg agaggtaatt ccgagtaagc
     2701 ggaagataag gactttgcta tttgaaaata tgaaccatca aagtcgaaat gatcttgatt
     2761 cgtgagtcaa cttctatgct gtgtttatcc aaataattca atactttatt cctcaacagg
     2821 aaaggttcta gccgctctcg aaatgagtct ggcaattctc aaaggttcag gaatttttcc
     2881 ttggatgata aaactattta atatgtgaag agttttgggg gagcttatac cccaacttcg
     2941 aacatatacg gtcattccag ttttcagagt gaagtgctca cggtttccca atttcctata
     3001 ctcctcgact cgtttagtcg cttcagattt tgaaaaatta tcaaaaaatc tgtcttctat
     3061 ccccaatgaa tcttggtatg ttaccccaat tacgggtatt ccagttgttt caagtatttt
     3121 tcccccaacg acgacgttgt acaggcttat tatcaaacca ttgatcatta tacaattaac
     3181 atcgttccga tccaatttcc tgaacattga gataatttgc tttgtagcgt cgtcccctcc
     3241 aaccaatgtc cttcccagaa cgactccgtc tacctgcatg tcacgtcgca aaacaacacc
     3301 gcagagggtt gaaaatgtcg agttcttctt gaagctctcc gccactccaa acacacgaac
     3361 tccctttttt tcaggatgga ttcttttttg acgcttttcg ctgaactcca tcgcatccac
     3421 ttacttatta tcaaacccca tattaatggg ctcctccgtt cgaagaaagc aattttgtat
     3481 gctcatttt
//
LOCUS       DASPFX010000063         2558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1771053, whole genome shotgun sequence.
ACCESSION   DASPFX010000063 DASPFX010000000
VERSION     DASPFX010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1771053"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..312
                     /locus_tag="VD694_01405"
     CDS             <1..312
                     /locus_tag="VD694_01405"
                     /inference="COORDINATES: protein motif:HMM:NF013422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11385.1"
                     /translation="KNDTLEENYSNSLSIEGIVHQLDLDEIHIVIAREIKKSNKLITV
                     IRGIDESENVQEISKELKTRLGTGGTIKNGQIILQGDHREAVKKLLVKERFKQESIEI
                     M"
     gene            530..1573
                     /locus_tag="VD694_01410"
     CDS             530..1573
                     /locus_tag="VD694_01410"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HXW11386.1"
                     /translation="MQVGIDSFAAWDNTSLSLNPSERLRKLVEQIEFADKVGLDLFGI
                     GEHHRKEFLDSAPTVILGAAAARTKRIRLTSAVTVLSATDPVRLFQEFATLDLLSQGR
                     AEMVVGRGSFSEAFPLFGLMLEDYDSLFAEKLDLLLKIRDNEHVNWSGEYRPPLSGQG
                     IYPRPLQNPLPIWLGVGGTPESFVRAGQLGLPLMVAIIGGQTHRFKPLVDLYRESGME
                     AGYTADQLKVGVHSLGYVAETTKQAADEFFPGYARTMTEIGKERGWPKMTRDHFEEQM
                     GPKGALIVGDPDEVIRKIIRHSKALGGISRITFMMNPASLPHDKLMQATELIGTKIVP
                     ALHEVAGNERIIK"
     gene            complement(1648..1884)
                     /locus_tag="VD694_01415"
     CDS             complement(1648..1884)
                     /locus_tag="VD694_01415"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-binding protein"
                     /protein_id="HXW11387.1"
                     /translation="MPIFMDTHKVPFTKQQLQELCASPRDEFGVAHVDLLFNKDANVC
                     FCVLDAPDEEAVKKHHEKADVKCEWIIQVETAKT"
     gene            complement(1885..2223)
                     /locus_tag="VD694_01420"
     CDS             complement(1885..2223)
                     /locus_tag="VD694_01420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11388.1"
                     /translation="MNARLLRCRNPNCSKKLKMQFSSADSKPIVFCSVPCFNTILENE
                     KLSQNLESEDPNELRLLVKNLVDQTKNMQKELENLQEIRKTYFDIFKSSKLKDEVYKR
                     KWSSQSEVEK"
     gene            complement(2340..>2558)
                     /locus_tag="VD694_01425"
     CDS             complement(2340..>2558)
                     /locus_tag="VD694_01425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11389.1"
                     /translation="MSTLMVPTKDIKKYTELLDNSKVDILGQQSFIDLRETGSGGANQ
                     TLLVIGSNNQMDDTIATFKKITASLPYG"
BASE COUNT          798 a          470 c          513 g          777 t
ORIGIN      
        1 aaaaacgata cgttagaaga gaattattca aattcattat caatagaagg cattgtacat
       61 caattagatc tagatgaaat tcatatcgtt attgccagag agatcaaaaa gtctaataaa
      121 ctaattactg tcatacgcgg aattgatgaa agcgagaatg tacaagaaat aagtaaagaa
      181 ttaaagacta ggttgggaac aggtggaaca atcaaaaatg gacaaattat cttgcaaggt
      241 gatcataggg aagcagtcaa aaaattactt gtgaaagaga gattcaaaca agaatctatc
      301 gaaatcatgt aaaaaaaaat aattagaaag attacttttc acgccgtact tcatgattgt
      361 aatatcagtt aacactcaca ggaaataaag atcgttacta gcatttttac attttgagta
      421 tcttgtgtac aaatgagata gcaattgttc cttcaccaac tgcagaagca acttttcaaa
      481 ataaaagaaa acatttaacc tataaactgg tgagttacat atttacaata tgcaggtagg
      541 aatcgatagt tttgcggcat gggataacac aagcttatca ttaaatccgt ctgagcgttt
      601 gagaaaatta gtagaacaaa ttgaatttgc tgacaaggta ggattggatt tgtttggaat
      661 tggagaacat catcgtaagg aattccttga ttcagctcct actgtcatac ttggagcggc
      721 cgcagcacgt acaaaacgta tacgtctgac gagtgctgta acggtattaa gtgctacaga
      781 tcctgtccga ctctttcaag aattcgctac actagatctt ttgtcacaag gtcgtgcaga
      841 aatggttgtt ggccgtggtt catttagcga ggcgttccct ctttttgggt tgatgttgga
      901 agattatgac tcgctttttg cagaaaaact tgatttgctg ttaaagattc gtgacaatga
      961 gcatgtgaac tggtctggag aatataggcc tccgctatca gggcagggaa tttaccctcg
     1021 acccttacag aaccctttgc cgatatggct aggcgtcggt ggaaccccag aatcgtttgt
     1081 gcgtgctggt caacttggac ttccattgat ggttgcaatc ataggaggtc agacacatag
     1141 gttcaaaccc cttgtcgatc tctacaggga atcgggaatg gaagcaggct atacagctga
     1201 tcaattaaag gtaggtgtgc attccttggg ctatgttgct gaaactacaa agcaggcagc
     1261 cgatgagttt tttcccggat acgcgcgtac gatgactgaa ataggcaagg aacgcggatg
     1321 gcctaagatg acacgtgacc attttgagga acaaatgggt cctaaaggtg cactcattgt
     1381 gggagatcca gacgaagtaa ttaggaaaat catcagacac agtaaagcgc taggaggcat
     1441 ttctaggatc acgtttatga tgaaccccgc ttccctacct catgacaagc tgatgcaggc
     1501 tacggaatta atcggtacga agattgtccc tgcacttcat gaagtagctg gaaacgaacg
     1561 aataataaag taggatagtt ctaactcaat ctaaaagact aataaatcat attttgcgtc
     1621 aaaaagtgag tttgttggaa atagaatcta tgtttttgca gtctcaactt gtattatcca
     1681 ttcacactta acgtcagctt tttcatgatg ttttttcaca gcctcctcgt caggtgcatc
     1741 aagaacgcaa aagcaaacat ttgcatcctt gttgaaaagg agatctacat gcgccacacc
     1801 aaattcatcc ctaggagagg cacacagttc ttggagttgt tgcttcgtaa aaggaacttt
     1861 atgtgtatcc ataaatattg gcaattactt ttctacctca ctctgagatg accatttacg
     1921 tttataaact tcgtctttca gcttggaact tttgaaaata tcaaagtagg ttttcctaat
     1981 ttcctgaagg ttttctaact ccttttgcat gttctttgtc tgatctacca gatttttaac
     2041 tagcaatcgc agttcattag gatcctcaga ctcaagattc tggctcaatt tttcgttttc
     2101 aagtatagta ttaaaacatg gcacgctgca aaatactatc ggtttagaat ccgcactgct
     2161 gaattgcatt tttaattttt tgctacaatt ggggttccta cacctcaaca atcttgcatt
     2221 catagtctga tattgtaata atttctagat aataaactgt atttgtaatt aatattgttc
     2281 tgtatcctgg acaccaatat tacccaaatt ttataccttg tcaaaggttg ttgtaagtac
     2341 taaccataag gcaaagaggc agtaattttt ttgaatgtag cgatagtgtc atccatttga
     2401 ttgttacttc ctataacaag caaagtttga ttcgccccac cacttccagt ttctctaagg
     2461 tctatgaacg actgttggcc aaggatatcc actttactgt tgtcaagtaa ttctgtatat
     2521 ttcttaatat cctttgtagg aaccataagt gttgacat
//
LOCUS       DASPFX010000064         4902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_905994, whole genome shotgun sequence.
ACCESSION   DASPFX010000064 DASPFX010000000
VERSION     DASPFX010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4902
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_905994"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..840
                     /locus_tag="VD694_01430"
     CDS             <1..840
                     /locus_tag="VD694_01430"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HXW11390.1"
                     /translation="ARNDWHTNVVSKMAIDDPSKLAEYALHVSRIVAYDSLVIQDELA
                     KIEEIGKKVAKSFKGTSEFRPTQLIEKINHQLYKIENFKGNRDDYYNPSNSLLNTVIK
                     RKTGNPITLSILYIQLAKSLNFTLYPVNFPSHFMVKHVLDDEENEIIIDPFNGGRIMD
                     DYSLKELLDHFYPKMNIALTRKLVDKASNPDVIIRMLNNLKTSFFECQDLDSAELVNE
                     MILDINGNDQHGLRDKGMVCLHKKKYDEALEFFNTYLDKFPEANDVDTILELIRKIKT
                     SDL"
     gene            842..1207
                     /locus_tag="VD694_01435"
     CDS             842..1207
                     /locus_tag="VD694_01435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11391.1"
                     /translation="MSLDSELLDIVRKIVVCTNDIDLTKKTENTVFILFVEESQGSAG
                     GRIGGAGFRRISRISCFHVVEGVEQKIFETSDETEISKFEIPLSAVAMDIKLSDGVPK
                     VVQGIVDEDLVKTYLALIH"
     gene            1396..2208
                     /gene="murI"
                     /locus_tag="VD694_01440"
     CDS             1396..2208
                     /gene="murI"
                     /locus_tag="VD694_01440"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HXW11392.1"
                     /translation="MITHNKSIAVFDSGLGSLSVIRGLRSQISKENIIYYADKKNFPY
                     GQKSVDELEQIMAETVNNLSSFDPKLIVVASITPSIQMLNKIKSMSSIPILGVSIPLK
                     EASRLTKKKHIGILGTRGTIKSRELEEQIKLEVPQDIFVTKFDASDLIEIVEKGLFLK
                     DADHTIKTISRSMDGLKDTNLDVLVLSSTHLSFIRSHLESMYPSLRIIDSALSAVKEI
                     RQFLKSKNILRKNGLGRMRIVVNGNKDEFRETLLEMGLSGSVESFQKERISV"
     gene            2281..2787
                     /locus_tag="VD694_01445"
     CDS             2281..2787
                     /locus_tag="VD694_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCMP deaminase family protein"
                     /protein_id="HXW11393.1"
                     /translation="MKNRPNWDVYFMLQAEIAKLRSNCLSRQVGCVIVKENRQIATGY
                     NGTPSGIKNCFDGGCPRCLDKQNNKIKSGENLERCFCTHAEANAIMQCALFRTGSTRG
                     STLYSTFAPCLECSKMAISVGISRIVILGSYPEDGISILNQANIEISKLEKGEVLSWI
                     SDLNNIKA"
     gene            3503..3646
                     /locus_tag="VD694_01450"
     CDS             3503..3646
                     /locus_tag="VD694_01450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11394.1"
                     /translation="MPNSKREMYVCFSKEEISMLEDFAKNKGMLNIGQALESLVKERN
                     SEN"
     gene            complement(3685..4023)
                     /locus_tag="VD694_01455"
     CDS             complement(3685..4023)
                     /locus_tag="VD694_01455"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HXW11395.1"
                     /translation="MKRIDAIIPQSKMSDAFSALKELNIGGFTYFDSKGRGVNPPAAV
                     HSGRGTSLYTPEFNANLTIFTVVDDSLVEQVVNKILASTSTGLAGEGKIFISDVDEII
                     DIGTKSKDKP"
     gene            complement(4154..4351)
                     /locus_tag="VD694_01460"
     CDS             complement(4154..4351)
                     /locus_tag="VD694_01460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11396.1"
                     /translation="MVGTGFNGEVISGISLTVFGIMLVVYGMVNQVAAILIPADIMII
                     AIGIAVILVGVFTNRKNTIIH"
     gene            complement(4405..4761)
                     /locus_tag="VD694_01465"
     CDS             complement(4405..4761)
                     /locus_tag="VD694_01465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11397.1"
                     /translation="MSTCDICGSRFGSKSCVVCSKIVCTSCVNRKGTICKRCSSKKIE
                     KVSFFKKNLPYIALIIAMWFFVSGLYPFPYFMLIGTPVDMGIMQPVLIATTVMTIPFI
                     FMLFAWKKRSERMRSE"
BASE COUNT         1734 a          804 c          885 g         1479 t
ORIGIN      
        1 gcgcggaatg attggcacac caatgttgtc agtaagatgg caatagatga tccgtctaaa
       61 ttagctgaat atgctttaca cgtctcacgt attgttgcgt atgatagttt ggtaatacaa
      121 gatgaattgg caaaaattga agaaattggt aagaaagttg caaagtcatt caaaggtact
      181 tcagaattta gacctactca attgattgaa aaaataaatc accaattgta caaaattgaa
      241 aattttaaag ggaataggga tgactattac aacccttcta atagtttgct caacacagta
      301 ataaagagaa aaacgggaaa tcctataaca ctgtcaatat tatatatcca attggccaaa
      361 tcactaaact ttacacttta tccagtaaat tttccttccc actttatggt aaaacatgtt
      421 ctagacgatg aagaaaatga gattataata gaccccttta acggaggcag aataatggat
      481 gattactcat taaaggaact attggatcat ttctacccaa aaatgaatat tgccttaacc
      541 agaaaattgg ttgacaaagc atcaaatcct gacgttatca taagaatgct gaacaatctt
      601 aaaacgagct tttttgaatg ccaagatttg gatagtgctg agcttgtaaa cgaaatgata
      661 ttggatatca acggaaatga ccaacatggg ttgagagaca aaggaatggt gtgtcttcat
      721 aaaaagaagt acgacgaagc gctagaattt tttaacacct atcttgacaa gtttccagaa
      781 gccaatgacg ttgacacaat tttggaacta ataagaaaaa tcaaaacaag tgatctatga
      841 cttgtcttta gattcagaat tacttgatat tgtgagaaaa atcgttgtat gtactaatga
      901 tattgatttg actaagaaaa ctgaaaatac tgtattcata ctcttcgtag aggaatcgca
      961 aggttctgcg gggggaagaa taggaggggc cggatttaga agaataagta gaataagctg
     1021 ttttcatgtt gttgaaggcg tcgaacaaaa aatatttgaa acaagtgatg aaacggaaat
     1081 atcaaaattc gaaatacctt tgagtgcggt ggcaatggat atcaaactgt cagatggagt
     1141 tccaaaagtg gtccagggta ttgtagatga ggatttagta aagacttatc ttgccttgat
     1201 acactaggtg gtaaaaataa tagttccaac gtgcagttaa gcaggtctaa cagtacaagt
     1261 ccaattgcca accatcaaaa ctgtaatgat taaaacggtt ttgggcaact ctatcaatat
     1321 ccttgcatac atcaatcttg ggcagaccaa tttcaatcat aatataaatt gggattgtag
     1381 ataataaaat gaaaattgat aactcataac aagtcaatag cggtatttga ttctggactt
     1441 ggatcactat ctgtcatcag agggttacga agtcagattt caaaggaaaa tatcatttat
     1501 tatgcagata aaaaaaattt cccatatggt caaaaatcag tagacgagct agagcaaatt
     1561 atggcagaga ctgtcaacaa tttatctagt tttgacccaa aattgatcgt cgtcgcatcc
     1621 atcacgcctt cgatacaaat gttaaacaag ataaaatcaa tgagttctat tccaattttg
     1681 ggagtttcga ttccattaaa agaggcctca agactgacca aaaagaaaca tatcggaatt
     1741 cttggaactc ggggaactat caaaagtaga gagcttgagg aacaaatcaa attggaagtt
     1801 ccgcaagaca tatttgttac aaagtttgat gcgtcagatt taatagaaat tgtagagaaa
     1861 ggactttttc ttaaagacgc tgatcataca atcaaaacca tttcaaggtc catggatggt
     1921 ttaaaagata caaatttgga tgtgttggtt ctatccagca cccatctgtc atttatcaga
     1981 tcgcatcttg aatctatgta tccttcttta aggatcattg attctgcact aagcgcagta
     2041 aaagaaataa gacaattttt gaaatccaaa aatattctca gaaaaaacgg attgggcaga
     2101 atgaggatcg ttgtaaatgg gaacaaggat gaatttagag aaacattatt ggaaatgggt
     2161 ttgtcaggat cggttgaaag ttttcaaaaa gaaagaattt cagtttaggt gattgtattc
     2221 ccactggttc ttgcttctgt atcgattatg ttaaatattc ataaatctcc tctttagacg
     2281 atgaaaaacc gacccaactg ggacgtctat ttcatgttgc aagctgaaat agcgaaattg
     2341 cgatcaaact gtttgagtcg tcaagtcggt tgtgtgattg taaaggaaaa tagacaaatt
     2401 gctacaggct ataatggcac tccatcagga attaagaatt gttttgatgg tggttgtcct
     2461 agatgtttgg ataagcagaa taacaagata aagtcgggtg aaaatctcga gagatgtttt
     2521 tgcactcacg cagaagcaaa cgcaataatg caatgtgcac ttttcagaac tggaagtact
     2581 agaggttcaa ctctgtactc tacatttgca ccgtgtcttg aatgcagcaa aatggcgata
     2641 agcgttggta ttagccggat tgttatacta ggctcttatc cagaagacgg aatttctata
     2701 ctaaatcagg ctaacataga gatttcaaag ttggagaagg gagaagtact atcttggatt
     2761 tcagatttga acaatataaa agcatgaaag tctatctttt agttaacagc cgtaccaaat
     2821 ttggtaggct ttgtgatgat tgattaaaat ctcaagaccg aaattctaat gttttacacc
     2881 aaaatacatc gaatgtaaat ccaccgattt gtttttgaaa aaaacgattg gtgccggtgc
     2941 cgttttggca ccaatcttta tcatcaatct ggtatggttt gatgacaagt tatacttagc
     3001 agagatttca taaataattt tattataact ggttatgatt tttcataaca tgacaaaagg
     3061 taaaggctct aaacacatat tctgttacat gtgtcgtaaa gagttttacg ataaagaagt
     3121 ctttgaaaat cataaaccat accgatagag gaatttatta agattaaaca atatctgatg
     3181 atgtggaact gccataagat tatagttcat ggtaaaatcg gcaaaaaaca aacatttact
     3241 tgatttctta aaacatcaat agatcctcca atacccacag gggcaattat cctttttctt
     3301 attggactcg gtattgctgg aacattgtcc ttttacccgt acgtaaagga actaatcgac
     3361 agaaatactg tatcagatcc ctaacttacc agaactcatg actcgccgaa ttgttacagc
     3421 tatattatta atggtaatcc gtcaaagacg ttacagaacc atacatagaa agatatatta
     3481 gattccaaac agtcgttaaa atatgcctaa ttcaaaacgt gaaatgtatg tatgcttttc
     3541 aaaagaagaa attagcatgt tagaagactt cgcaaaaaac aagggaatgt tgaatattgg
     3601 tcaggctcta gaatctctag taaaagaaag aaatagtgaa aattaagttt tattcataca
     3661 ttccaaaata atttttaaaa attattatgg tttgtctttt gactttgtgc caatgtcgat
     3721 gatttcatct acgtctgaga tgaaaatttt tccttcacct gcaagtcctg tactcgtgct
     3781 tgcaagaatc ttgttcacaa cttgttcaac tagcgaatca tcaactacag taaagatagt
     3841 caagttggca ttaaattcgg gtgtataaag agaggtacct ctacctgaat gtactgcagc
     3901 aggaggattc acacctcttc ctttcgaatc aaaataggta aaaccaccaa tgttcaattc
     3961 tttcaaggca gagaacgcat ctgacatttt tgactgagga ataattgcat ctattctttt
     4021 catagttact agtgtattcc attgctttta ttaaaatttt cttatttaaa aaacaaattt
     4081 agccaatttt ggataaaaag tccattaaat tcacaaacaa catgctgatg taattagaaa
     4141 agacggtgta tcgttagtga attattgtgt tttttctatt cgtaaacact cctactaata
     4201 tcacggctat gccgatagca ataatcatta tgtcagcagg gattagaata gccgcgacct
     4261 ggttaaccat gccatagaca actaacatta ttccaaacac cgttaaggaa atgccagata
     4321 ttacttcacc attaaaacct gttccaacca tgttattgat tacggatgtg taattataaa
     4381 aatcatttca ttgaatagat aaaactattc tgatctcatt ctttctgacc gtttcttcca
     4441 tgcaaataac ataaagataa aaggtatagt cattaccgtt gtcgcaatta gtactggctg
     4501 cattatcccc atgtctacag gtgtgccaat taacataaaa tacggaaatg gatagagtcc
     4561 tgatacaaaa aaccacatgg ctattattaa tgcaatatat ggcaaattct ttttgaaaaa
     4621 tgaaaccttc tcaatttttt ttgaactgca tcttttgcaa atagtcccct ttctgtttac
     4681 acaagatgta catactattt ttgaacatac cacacaagac ttgctaccaa atcttgatcc
     4741 gcatatatca caagttgaca actggaaaaa tataatatgg caatatgtaa aaatgtttta
     4801 ccatcatctg ggacttcaag tacccaacct gaaattaaat caaaagtaat agaaaagatg
     4861 attctaatct ttgagataaa aacctaacca cttgttgtgg tc
//
LOCUS       DASPFX010000065         2010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1584434, whole genome shotgun sequence.
ACCESSION   DASPFX010000065 DASPFX010000000
VERSION     DASPFX010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1584434"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(372..746)
                     /locus_tag="VD694_01470"
     CDS             complement(372..746)
                     /locus_tag="VD694_01470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11398.1"
                     /translation="MVDNRIYILIDDLLKLSDKIYAIEILNLEGKRLYKFYRTDVTEQ
                     NFDDLYQDLNNITRSSKTLSLENIKISVIDKELSKIAIVNICNDNFLIIAFCQEVSLT
                     DIVDVVSYLSNAMLGMKNKQAS"
     gene            complement(941..1480)
                     /locus_tag="VD694_01475"
     CDS             complement(941..1480)
                     /locus_tag="VD694_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11399.1"
                     /translation="MSKAKRRTTESITLRVESSVLNQIRYEAEQKLESVNTLINQVLK
                     QYVKWHAHTPNAGMFYISRNLMGSLLRKFSDEEIIQLSEEEIRDSFKKAFFVFYEEYN
                     LESVLELLDYYARASGLNYTHRIENNNHTIIIHPEMGEKASLLLSSLIRNVLKTLPIP
                     SSAYHIQQSNGTLIIKIKI"
     gene            1786..>2010
                     /locus_tag="VD694_01480"
     CDS             1786..>2010
                     /locus_tag="VD694_01480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HXW11400.1"
                     /translation="MTTDTPIVEERLPLHIISPAQVQTRIYASLSQQESIDELSRSIK
                     KHGLLQPIIVRPINRGFEIVAGHRRFQACKL"
BASE COUNT          641 a          355 c          332 g          682 t
ORIGIN      
        1 cgattgtatt ctataaacat taatcttgga ttgaatgcaa atctccctta gtagacaagt
       61 aaactaccaa tgtttataaa tctgggtctt gtcgtgtaaa atgagcagaa aatttgtcta
      121 gtggcgatac taactcatca aaatcctaca aatgcaatgt atgtgaaatg accttcaggt
      181 ccttgggtga aatgaacaat cacaaaattg aacagcatct acaaaaaggt gatatccctt
      241 cagaagaaaa aaaatgactt tgatgataac attaagacct tgagtagcag gtaacaacaa
      301 attatacctt caagagcttg gacaattttc aaacataccc catatgtccg gttattattt
      361 atttaattaa cttaggaagc ttgcttattc ttcatcccaa gcatggcgtt acttagatag
      421 gaaactacat cgacaatatc ggtcaaggat acctcttggc aaaaggcaat aattaaaaag
      481 ttatcattac aaatatttac tattgcaatc tttgataatt ctttatcgat aactgagatc
      541 tttatgtttt caagggaaag agtctttgat gacctggtga tattatttaa atcctggtac
      601 aggtcgtcga agttctgttc agttacgtcg gttctataaa acttataaag tcgttttcct
      661 tccaagttta aaatttcaat tgcataaatc ttgtcactga gctttaaaag atcgtcaatc
      721 agaatgtata ttctgttgtc gaccatgcag attcaaagga gagagtgcta ttaagcattt
      781 taaattgcat taaattactg ggaactacta tttacttgac aaacacacat tcccctagac
      841 ttaattctgt atcctgcaag agaataccat ttaataatag ttctttgttg aataaagtct
      901 aataaagatc aattataatt ttgacatttg ttaaccttgt ctagattttt atttttatga
      961 ttagagtacc atttgattgt tgaatgtgat aagcggaaga gggaataggt agggttttaa
     1021 gtacatttct aatcaatgac gataataata aagaagcttt ctcgcccatc tccggatgaa
     1081 ttattatggt atgattatta ttttctattc tgtgagtgta gtttaatcca gatgctcgtg
     1141 cataataatc caatagttca agcacacttt caagattata ctcctcatag aacacaaaaa
     1201 aagccttctt aaaactgtcc cttatttcct cctcactgag ttgaattatt tcttcatccg
     1261 aaaacttccg caacaaagaa cccattaggt tccttgaaat atagaacatg ccagcatttg
     1321 gggtatgagc atgccacttt acatattgtt ttaggacttg atttatgaga gtatttacac
     1381 tttcaagttt ttgttcggct tcataacgta tctggtttag aactgaggat tctactctaa
     1441 gcgtaatact ttcagtcgtt cgtcttttgg ccttagacat ctccgaaatt ttcccgtaac
     1501 tcccactttg tgatattgtt tattgtgtgg ctactggcgc cgactgaaga ttgacaaacg
     1561 gtaaacagta tcatttacct acatgagttt aaataacgct attgtaatta tatgtttcaa
     1621 attagccgat ttgtggaata tttataactt tcgaaatttt acgaatttgt atctactttt
     1681 attaaattgt gcgtataaaa cgcgcagatt atatgcctcg cctcataatc ctttttgatg
     1741 tatggcgtga gcttttgtca atcatttaca ggagtctaat aaatcatgac tactgatact
     1801 cccatagtcg aagaaagatt accattacat atcatttcgc ccgctcaggt tcaaacaaga
     1861 atctatgctt ctttatcaca acaggaatct attgatgagt tatcacgaag cattaaaaag
     1921 catggccttc tccagcccat aattgtcaga cctatcaatc ggggatttga aatagtggcc
     1981 ggtcatcgaa gatttcaagc ttgcaaatta
//
LOCUS       DASPFX010000066         2181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2046571, whole genome shotgun sequence.
ACCESSION   DASPFX010000066 DASPFX010000000
VERSION     DASPFX010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2046571"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..881)
                     /locus_tag="VD694_01485"
     CDS             complement(<1..881)
                     /locus_tag="VD694_01485"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HXW11401.1"
                     /translation="MGSWRNPKLRDLNLQAFEKSISISIREQVDFIIITGDFFDVNIP
                     QLGPVKRAVEILKHARDSGIDVYMIYGSHDFNNANISMIDILHSAELFIKPTEFQADS
                     NSVKLKFFVNKRTGAKITGISGRKVGLDKEIYEKLDRKNLEMEEGFKIFLLHTGIQEI
                     LPLDRNFRDSLSLSLLPKGFDYYGGGHIHKRLEKKIDSSLIVYPGPLFGSTFQDLEET
                     AKGEKRGFYIVSFENEILDCRFIEISVAEILYKEIVTSKWSTEKLENEIARNISELQV
                     KNKIVLLKVKGKLVGKRS"
     gene            complement(1030..>2181)
                     /locus_tag="VD694_01490"
     CDS             complement(1030..>2181)
                     /locus_tag="VD694_01490"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HXW11402.1"
                     /translation="KSYRARAVQVVEALLKEMETILNGIVMLTEVTEKAMDYLLSFGE
                     RLLTPIISYSLLDKGLDSVYLTGQEAGILTDSKFGHARPLLDTTRIRVKYHIDPLLKE
                     NKIPVITGFIGADQNGNITTLGRSGSDYTATIIAVCVDADEVWLWTDVNGLMTADPHI
                     VKEAKVLKEVSFAEAIELSLFGAKYMHPRALEPVMDTKIPIRIRNAFNLSNVGTVISK
                     NPSKTSQKIVKSIIAIRNTALIDVSGGGMVGAPGTAAKIFDALARKSVNIMMISQSPS
                     ESSISMVVKKGDLDTATTTLDLTLLDKVIKNVRVNEDVAVIAVVGSGMRGIKGIAAKV
                     FSSVSKDNINVIMIAQGSSELNLAFVVDNSDCEKAVRSLHEAFRLGKVN"
BASE COUNT          638 a          465 c          343 g          735 t
ORIGIN      
        1 gaacgctttc caactaattt cccttttact ttcaataaaa caatcttatt tttaacctgt
       61 agttcggata tatttcttgc aatttcattt tctaattttt ccgtactcca ctttgaggtt
      121 actatttcct tatagaggat ctccgctaca ctaatctcaa taaatctgca atccaaaatt
      181 tcattctcaa atgaaacgat gtagaaccca cgtttctctc cttttgcagt ctcttctaga
      241 tcctgaaaag tagaaccaaa aagaggacca ggataaacta tcaggctact gtcaattttc
      301 ttttcgagtc gcttgtgaat gtgtccgccg ccataataat caaatccttt aggaagaaga
      361 gaaagcgata atgaatccct aaaattccta tctagaggaa gaatttcttg aattccagtg
      421 tgtagaagga aaatcttgaa tccttcttcc atttctagat tctttctatc aagtttttca
      481 taaatctcct tatctaatcc aacctttctt ccagaaatac cggttatttt agcaccagtc
      541 cttttgttaa caaagaattt tagttttacg gaattagaat cagcttgaaa ttcagttggc
      601 ttgataaaaa gttccgctga atgtaatatg tcaatcatgg aaatatttgc attgttaaaa
      661 tcatgcgaac catatatcat atacacatct atccccgaat ctcttgcgtg ctttagtatt
      721 tcaacggccc gctttaccgg cccaagttga ggaatattta catcaaaaaa atctccagta
      781 attattatga aatcaacttg ttctcttata gagattgata ttgatttctc aaatgcttgc
      841 aaattaagat ctctaagttt gggatttctc catgatccca aatggcagtc ggttatatgg
      901 gcaaacttgt acaatattgt ttattcattc ccaactgtat tttaatattc attgttcata
      961 cgagtgcagg tatccaagaa cttttttcac gctatcgcag ttaattggca gaacttaata
     1021 tcggaaatct cagttgacct ttccaagcct aaaagcctcg tgcagtgacc ttactgcttt
     1081 ttcacagtca ctattatcaa ctacaaatgc cagattaagt tcagaagacc cttgtgcaat
     1141 cataattaca ttgatattat cttttgaaac agatgaaaaa accttggcag caattccctt
     1201 tatccccctc atacctgagc ctactactgc aatcaccgcc acatcttcgt tgactcttac
     1261 attcttaatg accttgtcaa gcagtgtaag atccaatgta gttgtagcag tatctaaatc
     1321 accttttttc actaccatgg agatgctgga ttcagaaggg ctttgagaga tcatcatgat
     1381 gtttacgctt tttctagcca atgcgtcaaa gattttcgct gctgtcccgg gtgcgcctac
     1441 catacctccg ccgctaacat caatcaatgc ggtattacga atagctatta ttgattttac
     1501 tatcttttgt gaagttttac ttggattttt tgagatcact gttcccacat ttgataaatt
     1561 aaatgcattc ctaattctaa tgggaatctt tgtatccatg acaggttcga gtgccctcgg
     1621 atgcatatat ttcgcaccaa aaagtgataa ttcaattgct tcagcaaatg atacttcttt
     1681 gagtacttta gcttctttta caatatgcgg atcagcagtc ataagaccat ttacatctgt
     1741 ccacagccaa acctcatcag catcaacaca aacagcaata attgtagcag tgtaatctga
     1801 tccacttctt ccaagtgtgg taatgtttcc attttgatct gcaccaataa agccggtaat
     1861 aactgggatc ttgttttctt ttagaagcgg atcgatgtga tattttaccc ttattctagt
     1921 tgtatccaaa agtggtcgcg catggccgaa ttttgaatca gtcaagattc ccgcctcctg
     1981 tccagtaagg tatacggagt caaggccttt atctaacaaa gaatacgaaa ttatgggagt
     2041 aagtaatcgt tctccaaaag atagcagata atccattgct ttttcagtta cttcagttag
     2101 cataactatg ccattcaaaa tagtctccat ctcttttaga agagcttcaa ctacttggac
     2161 tgccctggcc ctgtaactct t
//
LOCUS       DASPFX010000067         2736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1484535, whole genome shotgun sequence.
ACCESSION   DASPFX010000067 DASPFX010000000
VERSION     DASPFX010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1484535"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..621)
                     /locus_tag="VD694_01495"
     CDS             complement(<1..621)
                     /locus_tag="VD694_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11403.1"
                     /translation="MSVLKTWITVTLLSLSFAGSLVTMSNTTFIYAQQAETNTKLVHA
                     GQGNATDIVFEFIPQNMLIKAGESITWDNPNFYAEPHSVTFLNEIKYFPEFVVPFNVT
                     KSTEFQPSDPKTGADPLFVPSESRDTTKTVIMINARAFIPVVIDSSGKNVTYLQPNSN
                     YIMGGSESLVNSGWLWPEGQAPPGGSPISNFTITFKKPGTYSYLCNV"
     gene            complement(1263..1556)
                     /locus_tag="VD694_01500"
     CDS             complement(1263..1556)
                     /locus_tag="VD694_01500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11404.1"
                     /translation="MHLYIREEIPNEFQIYISGLNEITGSLWEIIDDKQNYLTTRDRT
                     YVLSLLMQCYTKRIEMLIGGPESKLNATMHMRTIKSQEDEESDPLLQSFLKRH"
     gene            complement(1563..1790)
                     /locus_tag="VD694_01505"
     CDS             complement(1563..1790)
                     /locus_tag="VD694_01505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11405.1"
                     /translation="MNPLPPTTGQPKIESKFGPDTHSMLEPDTKMGRQERQAKVLTLH
                     SKGYSQSEIANLLNINQYTVNRDIDDVRKKA"
     gene            complement(1996..2472)
                     /locus_tag="VD694_01510"
     CDS             complement(1996..2472)
                     /locus_tag="VD694_01510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11406.1"
                     /translation="MRHIGKGFYNKYRNHILLNKSIIVAGIAALIVGTIFTEFYSKYE
                     KNNFFNSIVTLTVEYSIYIPIFAFYFYHDNKNKYIDPVTGLRDKAVIKNDIIKLFTIF
                     SVSEIIYSVSKVSIHFQLMQISFEPYQASMIGSIAAWIIFLVLINLGAKFVRLFKK"
     gene            complement(2534..>2736)
                     /locus_tag="VD694_01515"
     CDS             complement(2534..>2736)
                     /locus_tag="VD694_01515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11407.1"
                     /translation="LPLVGLIIKGFIMSFVKHDLSPSRTFPGYCSDSAMCNSKEFKIK
                     RLYNLLRHGKKLNIRFVKSVKE"
BASE COUNT          878 a          468 c          461 g          929 t
ORIGIN      
        1 cacattgcat aaataagaat aggtgcctgg ttttttgaaa gttatcgtga agttactaat
       61 tggtgagcca cctggtggag cctgtccttc gggccagagc catcctgaat taacaagact
      121 ttcactccca cccatgatgt aatttgaatt cggttgaaga tatgttacgt tcttgccgct
      181 ggaatctatt accacaggaa taaacgccct ggcgtttatc atgataacag ttttagttgt
      241 gtcccttgac tcagaaggta caaagagtgg atctgcacca gtttttggat ctgatggctg
      301 aaactctgtt gacttagtaa cattaaatgg cacaacaaac tctggaaaat attttatttc
      361 attaagaaag gtaacagaat ggggttctgc atagaagttt ggattatccc aggtaatgct
      421 ctcacctgcc ttgattagca tattttgagg tatgaattca aacactatat cggtagcatt
      481 tccttgtccg gcgtgtacca atttggtatt ggtttctgcc tgttgggcat aaataaatgt
      541 ggtatttgac attgttacaa gagaaccagc aaatgaaaga cttaacagag taactgtaat
      601 ccaagttttt agtactgaca acaaaatcat atgagcttta cttttactta aagttggctt
      661 gtcgctttat tcataaaagg aataaagcaa tttaatcaca cacaacttaa ttaaagtgga
      721 aaaataaaac cgagaactac cagacaatta tacaaaatga atcatagagt tatctatagt
      781 gatatcacac ccgttgatat aaaaatatag gcttgaccgc tgtaaaagta ttcatcacag
      841 gatttcagcc tttatatttt gggaataatc ctcgactgag cctaaatcgc ttgcagcttg
      901 tgcctctgag tcttggatac aagcgaagat ctacggaaat atccaatttt aatgtagtac
      961 caccttcgtt accataaaag agtaatagaa acatagtcag taattttagc gattgaaaga
     1021 tgaaagcctc gtgcacattt tatgatcaat gttccctatc tcgattatca gcaaatggaa
     1081 atgagattat aatggacaag aagctgctgc ttacaagtac cctattatgg gaaaacataa
     1141 ttaacacgag acagaagttg ataaaaatat taactgtcgc aagggtaatg aggatttatt
     1201 aatgacactg aattctattg tgagtcgagc gatatacagg tgtattcaat ggttactaac
     1261 atttagtgac gctttaaaaa tgattgaaga agaggatcac tttcttcatc ttcttgactt
     1321 tttattgttc tcatatgcat agtagcattc aatttggact caggaccacc gattagcatc
     1381 tctatccgtt ttgtatagca ttgcattagt aatgacaata catatgtcct atctcttgtc
     1441 gtgagatagt tctgtttatc atctataatt tcccacaagc tcccggttat ttcattgagg
     1501 cctgaaatgt atatttgaaa ttcattagga atttcctccc gaatataaag gtgcaatgta
     1561 tttcacgcct tctttctaac gtcgtctatg tctctgttaa ccgtatattg attaatattc
     1621 aataaattgg caatttctga ttgtgaataa cccttactat gcaatgttaa tactttagcc
     1681 tgtctttctt gacgacccat tttggtatcg ggttccaaca tagaatgagt atcaggtcca
     1741 aactttgact caatttttgg ttgcccagtt gttgggggga gagggttcat gcaaatctga
     1801 gttcaaatta tgcagtttat gcatcaatat ggtaattctg atattttaat tttgaaatca
     1861 ttgtgatacc ccaaattcat catttttgaa tattgataat ttctagataa attcatccaa
     1921 tctaggattt ttcaaaattc agattcaact caagcgttac tcaattaatt atattgtaac
     1981 gataccaata caattctatt ttttaaataa ccttacaaac tttgcaccca agtttatcaa
     2041 tacgagaaag attatccatg ctgctataga acctatcata gatgcctgat atggctcaaa
     2101 ggatatctgc attaattgaa aatgaattga gacttttgat accgagtaaa tgatctctga
     2161 tacggaaaat atagtgaata gttttattat gtcattttta attactgctt tatctcttag
     2221 gccagtgaca ggatctatgt acttgttttt attatcatga taaaaataaa atgcgaatat
     2281 aggtatgtat atagaatact ctacagttaa ggtaacaatt gaattgaaaa aattattctt
     2341 ttcatactta gaataaaatt cggtaaaaat ggtaccaact atgagagcag ctattccggc
     2401 aacaataata ctcttgttta ggagaatatg attcctgtat ttattgtaga acccttttcc
     2461 aatatgtctc attattatta aaccaatgtt gtaggcaaag cagttgctat attattttct
     2521 tcaaaaactc taattactct tttaccgatt ttacaaacct gatattcagc ttctttccat
     2581 gtcttaacag attgtataat ctcttaatct tgaattcttt actattacac attgcactat
     2641 ctgaacaata tcccggaaag gttcgactcg gtgataagtc atgttttaca aagctcataa
     2701 taaatccttt aataattagt cctactaatg gtaata
//
LOCUS       DASPFX010000068         3307 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_620738, whole genome shotgun sequence.
ACCESSION   DASPFX010000068 DASPFX010000000
VERSION     DASPFX010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620738"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VD694_01520"
     CDS             <1..424
                     /locus_tag="VD694_01520"
                     /inference="COORDINATES: protein motif:HMM:NF015430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mRNA surveillance protein Pelota"
                     /protein_id="HXW11408.1"
                     /translation="NFLTKDFNENITVLEGIDVAGEDGIFVSLRSTSLKELLKASKIG
                     IVSSLLDKLIYLIHKGDPKYAIGVNEVRNAVGNKSIESLIYSNSILEKLDEVEFINLL
                     NSTEAVGAKIYGVDASTDIGLRVSSLGGIVGLLRFAIR"
     gene            complement(457..801)
                     /gene="cutA"
                     /locus_tag="VD694_01525"
     CDS             complement(457..801)
                     /gene="cutA"
                     /locus_tag="VD694_01525"
                     /inference="COORDINATES: protein motif:HMM:NF015077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HXW11409.1"
                     /translation="MIEIQRREQTKLGRSPNRGSIIISTFQSRKSANIIAKKMISKKL
                     CACVNIIKINSLYSWKNKLQYDNEYLCFFKTVSSTKLKNELKKIHPYELPEIVEIKMD
                     SVDKNYLRWLIG"
     gene            complement(826..1482)
                     /locus_tag="VD694_01530"
     CDS             complement(826..1482)
                     /locus_tag="VD694_01530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11410.1"
                     /translation="MTSFSNQWEKEAKKDTSERLRESLRSQKPLKPTMQSARNRLGIQ
                     TQKLDALLEKLKSKDRTLFNQIVTHLQNHDSQQSKMLSNELSQVRRTIKTISQLKMSL
                     EQVHMRLESTIDIGDALTALKPAVGTLSKVKTGLNGLMPNVDTELGEINDVFSDIMMN
                     ANSTSDIGFALNPSGGDINNILAEASVVAEQRVTDNFPDVPMGSFNRNARSSIGENTE
                     "
     gene            1674..3140
                     /locus_tag="VD694_01535"
     CDS             1674..3140
                     /locus_tag="VD694_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11411.1"
                     /translation="MNLKEWCKIDEALYSAETNEQYLQFAGHDYDKKNIENLSKMKYL
                     VSEIFVRSFSEPRILLLSSIENISDAMTKPLELKLHELRGSKIKSRDFKYGGKQVSWN
                     TWRQFNSAESDHKKRRLVFDDFVKKTKYIAPVINLRFKKIRKIYSDFSEKVDDNQKGS
                     LNPLDGYLISEKISLHKLKKLVSDMGTRARTSFSSDLNSGTELIGKEPEYYDDFYFFR
                     NRIFQNMEKHFVKINPVVTVKKTLGSIGFDFSKIHFDTDDRPKKYPSPICFFVKIPDD
                     IRVLYKSESPYFNLSSCYHETGHAIHASSIESDLNYWEKYKFSMGIAEIFSILIESLT
                     RNPLYLKDIGITNEKVLSELLWRNKFMELFFVVFYAANSLMKMEYWNRNLSICEASRL
                     YEKLIKKYMGLDVPGEYWMLHHILPEAIMYVPSYMIAAIRAAELERYLSNRFSDKWWN
                     EPSAGKKIREIMAKGERIDLEEFSKLDQNVFMKEICSG"
BASE COUNT         1063 a          510 c          618 g         1116 t
ORIGIN      
        1 caactttctc actaaagatt ttaatgaaaa tattacagtc ttggagggta ttgacgttgc
       61 tggagaggac ggtatttttg tatctctacg atctacatcc ctaaaagaac tactaaaagc
      121 aagcaagatt gggatcgtgt cgtctttact tgacaaatta atttatctta ttcataaagg
      181 cgatcctaaa tacgctattg gggttaatga agtaagaaac gcagttggca ataaatcgat
      241 tgaaagtttg atttattcta attctatttt agagaagtta gatgaggttg aattcatcaa
      301 cttgttgaat tctacggagg cagttggagc aaaaatatat ggagtagatg cttctaccga
      361 tattggactc agggtttctt ccttgggagg aatagtagga ctcctcagat ttgcaataag
      421 gtagaccttg atatctattt aatataacaa ctatgcctat ccgattaacc atctaaggta
      481 atttttgtcg acactatcca ttttgatttc aacaatttca ggaagttcat atggatgaat
      541 tttctttaat tcatttttta gtttggtaga tgatacagtt ttgaaaaaac agaggtattc
      601 attatcgtac tgtaacttgt tcttccagga atacaacgaa tttattttga taatgtttac
      661 gcatgcgcac agctttttag aaatcatttt tttcgcaatg atgtttgcag attttctaga
      721 ttgaaatgtg gaaattatta tggatcctct gttcggagat ctccctaatt ttgtttgttc
      781 tcttcgttga atctctatca actacaatta gaaaaactta atttcctact ccgtattttc
      841 accaattgaa gacctagcat tcctgttaaa acttcccata ggaacatcgg gaaagttgtc
      901 cgtcactctt tgttcagcta ctacacttgc ttctgcaaga atattattta tgtctccgcc
      961 agaaggattt agagcaaagc caatatcaga agtgctgttg gcattcatca taatatcgct
     1021 aaacacatca ttaatttctc ccaattctgt gtcaacattt ggcattagtc cattgagtcc
     1081 tgtttttact ttggatagag taccaactgc tggttttagt gcagtgagtg catctccgat
     1141 atctatagta gattctagtc tcatgtgaac ttgttctaag gacattttca attgagagat
     1201 agtcttaatt gtccttctga cctgtgagag ttcatttgat agcatcttac tctgctggct
     1261 atcatgattt tgtaaatgag taacaatttg attaaagaga gttctatctt ttgattttaa
     1321 tttctccaaa agcgcgtcta gtttttgtgt ttgaattcct agtctgttcc ttgctgattg
     1381 catagtgggt tttagaggtt tctgagatct caaagattct cttaatcttt ctgaggtgtc
     1441 ttttttagcc tccttttccc actggtttga aaagctagtc ataacatcta aacaaatcag
     1501 tagacgttaa atcaaagtgt catatttcaa taacctgctt gtaatatttt ctaaacatgt
     1561 tgacacatac ttctagtatt cttttctatt atctatctca actcttatca agcgagtatc
     1621 cttgcatgcc tttttaacca acttaaatat cttttagtct agaattatct ctattgaacc
     1681 taaaggagtg gtgtaaaata gatgaagcgt tgtatagcgc cgaaactaat gaacaatatt
     1741 tacagtttgc tggccatgat tatgataaaa agaatatcga aaatttgtcc aaaatgaaat
     1801 atttagtctc tgagatattt gtaagatctt tttctgaacc aagaatattg ttgctctctt
     1861 caatcgaaaa tatttctgat gcgatgacaa aacctctaga attgaaatta catgaattaa
     1921 gaggcagtaa gataaaaagt agagatttca aatacggcgg aaagcaagtt agctggaata
     1981 catggaggca atttaatagc gctgagtctg atcacaagaa aaggagatta gtctttgatg
     2041 attttgtaaa gaagacaaag tatattgcgc ctgttatcaa tttacgattt aaaaaaatca
     2101 gaaaaattta ttctgacttt tctgagaaag tggatgataa tcaaaaagga tcacttaacc
     2161 cactagacgg gtatctaatt agtgaaaaga tttctctaca taaactcaag aagttggttt
     2221 cggatatggg gacacgtgca agaacatcat ttagtagtga tttaaattcc ggtacagagt
     2281 tgattgggaa agagcccgaa tactatgatg atttctattt ttttcgtaat agaatattcc
     2341 agaatatgga aaagcatttt gtaaaaatta atcctgttgt tactgttaag aagactttag
     2401 gttcaatagg atttgatttt tcaaaaatac actttgacac agatgacaga ccgaaaaaat
     2461 atccatcgcc gatatgcttt tttgtaaaaa ttcctgatga tataagggtg ctttacaaaa
     2521 gtgaaagccc ttattttaat ttgtcaagct gttatcatga aactggacat gcgatacatg
     2581 cctcttcaat agaatcggac ttgaactatt gggagaagta taagttttca atgggaatag
     2641 ctgaaatatt ttcgatacta atcgaaagtt taactagaaa tccattatat ttgaaagata
     2701 ttggaattac aaatgagaaa gtactaagtg agcttctctg gagaaataaa ttcatggaac
     2761 ttttttttgt cgttttttat gccgcaaatt cattaatgaa aatggaatac tggaatcgaa
     2821 atctttcaat ttgtgaggca agtagactgt atgagaagtt aatcaaaaag tatatgggtc
     2881 ttgatgtacc tggagaatat tggatgttgc atcatattct tcctgaagca ataatgtatg
     2941 tgccaagcta tatgatagca gcaatccgag ctgcagaatt agaaagatac ttgtccaata
     3001 ggtttagtga taaatggtgg aatgaacctt ctgccggtaa gaagataaga gaaataatgg
     3061 caaaaggaga gagaatagac ctagaggaat tttccaaact tgatcagaac gtcttcatga
     3121 aggagatatg ttctggctaa tatccgaata gataagataa ggagaacagg agaataatta
     3181 ttggtcggaa cttcgaagaa ggccgtttat gctgcgctat ttggcaactt aggaatatcg
     3241 attgctaaac tgattgcagc attactaacg aatagtagcg ctatgtggtc agaaacttat
     3301 cactcat
//
LOCUS       DASPFX010000069         2952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1473349, whole genome shotgun sequence.
ACCESSION   DASPFX010000069 DASPFX010000000
VERSION     DASPFX010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1473349"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VD694_01540"
     CDS             <1..259
                     /locus_tag="VD694_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11412.1"
                     /translation="IILIWSAYFTIFMNNDENKVMEPQDHSHPSRDAICTCKMCIHEI
                     ARDCLKADCSCCKETDHLMIMDGIEGFVSTSKKHILSRNSE"
     gene            669..1316
                     /locus_tag="VD694_01545"
     CDS             669..1316
                     /locus_tag="VD694_01545"
                     /inference="COORDINATES: protein motif:HMM:NF013957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MG2 domain-containing protein"
                     /protein_id="HXW11413.1"
                     /translation="MKNEAFIRGCKGTLLVTALIVLTTSLSLLLAGSVISTMIPNLVT
                     NPAYAVEEFDIDINVEDNDIERGDTQHITVTVRNDDTNDRVSDAEVRLTVDPPDSDSS
                     SATDETDNDGQARFDVKIDDDAETGTYDVEIRVSKDGYDTKTVSTSFDVIRGDDDDRD
                     SDRDGDKRSVTVSAAAAASSSSSDLGNAVGTGSGDAGGSSNRGPSGAAGASVSSP"
     gene            1813..>2952
                     /locus_tag="VD694_01550"
     CDS             1813..>2952
                     /locus_tag="VD694_01550"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HXW11414.1"
                     /translation="MVSTEYPPMPGGVGRYTRNLASALKKLGINVYIACNERGEGDFF
                     GLDASNKENSRTLLRIVDQIKPDLVHVQLEHGMYGLNFGSITKFCMQTNIDQFYEKCQ
                     TPTITTFHSAYPIEQWINLVPANHLTKFRLLDIPIELSSLALKYGNRLLTYELFNRAN
                     RKKMLRSAASIAFSEYLAKMLSTRNYNVNVIYHGAEPSLVNRPTKEVARSYYSLQLDR
                     RIALALGFATHTKGWEILKEMKIPDNWTILVNHSRNYYSKERDVQNSLPLNNNNDSRD
                     HHHNNQGLFELNLGFVPDDALSLLFYASDTVIMPYNVASGSGVMFDALAHGLPFVASD
                     LGFFREFARKGLGIAVRRNPFEFSEALKMLESDYPHYKKEVERFKS"
BASE COUNT          980 a          490 c          631 g          851 t
ORIGIN      
        1 gattatccta atatggagtg cttatttcac tatctttatg aataatgatg aaaacaaagt
       61 tatggagcct caagaccata gccatccatc tagagacgct atttgtacgt gcaaaatgtg
      121 tatccatgaa attgcaagag attgcctaaa agcagattgc agttgttgta aggaaacaga
      181 tcatttaatg ataatggatg ggatagaagg gtttgtttca acgtccaaaa aacacatact
      241 aagtagaaat tctgaatagt atgagataaa agtaagaaga ctattactag tggtggtcta
      301 tgtctctacc acgatatacg cacaagtgag attggacaat ataaagaagt tatcaagaat
      361 tgatttgcag aattggataa ctaatattgc gtcatcccct taccggtcta gtagatttca
      421 aatcgggatt caaagattcc tgacgagacc aagataggat cgaatgtcta ctattgaaaa
      481 taaagagtgg caaggtctga aaaagacaat acgttagtac gttagacaat acatagaaca
      541 taaatataat aataattgta ttaatttgcg tgatcccaca ctaaggataa aagcatggta
      601 accggtgacc atcaataatt aaagtttata tgcaatgttt ccctccccca tctggtaggg
      661 atacttgtat gaaaaatgag gctttcataa gaggatgcaa aggcactctc ttagttacag
      721 cattaattgt attgacaaca tctttatcat tattattggc tggatcggta atttcaacga
      781 tgataccgaa tctggttact aatccagcgt atgctgtaga agagtttgat attgatataa
      841 atgtagaaga taatgacata gagcgaggtg atactcaaca tataacagtt accgtacgta
      901 atgacgatac aaatgacagg gtttcagatg ctgaagttag attaactgtc gatccaccag
      961 atagcgattc gagcagtgct acagatgaaa cagataatga cggacaagca agatttgatg
     1021 taaaaataga tgatgatgca gaaacaggta catacgatgt agaaataaga gtgtcaaagg
     1081 atggatatga tacaaaaaca gttagcacat catttgatgt gataagggga gacgatgatg
     1141 atagagatag cgatagagat ggcgacaaaa gaagtgtaac tgtatcagca gcggcagcag
     1201 catcttccag tagtagtgat ttgggtaatg cagtcggaac tgggtctggt gatgccggcg
     1261 gttcgtccaa tagaggacca tcgggtgccg cgggagcgtc agtgtcttca ccataggtgt
     1321 gtataggtaa ttttagagtc ttttttacag gctctagcct accaatatct actggtttgc
     1381 attaccgtta cttaataaca gaatttatat cagtatcgca ttgcccttgt cccacttaat
     1441 ttagtcgatt tgcaataaaa tgaacctatg cacgtatcag acaactaatc gttatggaac
     1501 tgttggagag aaaatggtgc ctttaagtga agcagtagtc aaatcctccc ttcttctaat
     1561 taatgtgtta ctatgatgga tatttgcaaa ctgggggggg acggcaaaga ttcttcaata
     1621 gagcaagcaa taccattgta atcaagacaa tgacggcagt tgattcctca gacagaaaaa
     1681 taagatacat caaagatgga aatataaagg tttttttaag ctatctaccc cttatgccat
     1741 gagtcaattt atggaatcta cttataatat ctgacttgat attattatgg tatgtacccg
     1801 atttcagttc tgatggtttc tactgaatac cctcctatgc caggaggtgt aggacggtat
     1861 acaagaaact tggcttcagc attgaaaaaa ttgggtatta atgtatatat tgcttgcaat
     1921 gaaagaggag aaggagattt tttcggtctt gatgcatcga ataaagagaa ttctagaact
     1981 ttgctaagaa tagttgacca gattaaacct gacctggtac atgtgcagct ggaacatggt
     2041 atgtacggcc ttaattttgg ctcgataacg aaattttgta tgcaaactaa cattgatcaa
     2101 ttctatgaaa aatgccagac tccaactatc acaacttttc attctgctta tcctatcgaa
     2161 cagtggatta atttagtgcc agcaaatcac cttaccaaat ttcgtctgtt agatatacca
     2221 attgaactgt caagcctggc actgaaatat gggaatcgtt tgcttaccta tgaactattt
     2281 aacagagcaa atagaaaaaa gatgctcagg agcgcagcaa gtatagcctt ttctgagtat
     2341 ttggctaaaa tgttgtcaac caggaactac aatgtcaacg tgatttatca tggtgcagaa
     2401 cccagtttag tgaatcggcc tactaaggaa gtcgcaaggt cgtattactc tttgcaattg
     2461 gataggagga tcgctttggc attgggtttc gctacgcata ctaaaggttg ggagatacta
     2521 aaggaaatga agatacccga caattggact atacttgtta accattctag aaattattac
     2581 agcaaagaga gggatgtaca aaattctttg cctttaaata acaataatga tagtagagat
     2641 catcatcaca ataaccaagg actatttgag ttaaaccttg gcttcgtacc tgatgatgca
     2701 ctatctctat tgttttatgc ttcagacaca gtaataatgc cgtacaatgt ggcatccggt
     2761 tcaggggtaa tgtttgatgc ccttgcgcat ggccttccat ttgtagcaag tgatctgggc
     2821 ttctttaggg aatttgcaag aaaagggtta ggaattgcag tgagaagaaa tcctttcgaa
     2881 ttctctgaag cgctcaaaat gctggaaagt gactatccgc attacaagaa agaagttgaa
     2941 cgttttaaga gt
//
LOCUS       DASPFX010000070         3799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1722395, whole genome shotgun sequence.
ACCESSION   DASPFX010000070 DASPFX010000000
VERSION     DASPFX010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1722395"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VD694_01555"
     CDS             <1..396
                     /locus_tag="VD694_01555"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HXW11415.1"
                     /translation="TNATNATNATNATNTINMTSQGNYDEKAFYILIKTENNKTVFVP
                     DKVTLTAGDKIIWINQDNSGHRISVGSDSKTGYQLMNVAIPPNGMLDHQFQLSGTYFS
                     VLDNLISKGDITILDKGNEDHAVSIPLVD"
     gene            complement(642..1049)
                     /locus_tag="VD694_01560"
     CDS             complement(642..1049)
                     /locus_tag="VD694_01560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11416.1"
                     /translation="MTNFFKSLCETIAKSEKNIRFTAIVDHHGTILAFSERKGIKPLL
                     NEEQTAQYALAAVTRQYTRIRWQSILGKIDYTCSSYEKLLRITIPITDSRNHLCFVII
                     FTLDVTTKNFHHIIMNKVKPIVKEKEKELLNRA"
     gene            complement(1269..1508)
                     /locus_tag="VD694_01565"
     CDS             complement(1269..1508)
                     /locus_tag="VD694_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11417.1"
                     /translation="MAGYFGGFVSIPDPEGINVYLHDDRFEFCFMKNNSTLEIPYRNI
                     TSIENMTKAEYSLLRASIYFPLPDLVTYTKNIKKI"
     gene            2009..2551
                     /locus_tag="VD694_01570"
     CDS             2009..2551
                     /locus_tag="VD694_01570"
                     /inference="COORDINATES: protein motif:HMM:NF018627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11418.1"
                     /translation="MDSRRTLAIDLDSVLADTMVIWVEEFNKRNKSNIIKDDITSWDI
                     SKILDISITEVSDIFTYIWDKRWNDIPPTEPSIGNTVSDLHSKGFRISILTKRYRSSV
                     ANVIRWLDFYKIHCDDLLFVYDDAPKSNYPFDILVDDAPINFSELVHPRMGILFNQPW
                     NKNFTWPIRINALSEAIDLV"
     gene            2669..3205
                     /locus_tag="VD694_01575"
     CDS             2669..3205
                     /locus_tag="VD694_01575"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HXW11419.1"
                     /translation="MDQNAKISSSKLYSGKISIRLDRYYLGNKIVEKEIVEHSDSVGI
                     VALDNKQKIILVEQFRIASGKSLLEIPAGKIENGETPKMAALREMNEEIGYSGNLTPL
                     FQCYLAPGYDTEKMYFFLASDLKISKNRLPPDEDEAIRVRRITLSSALKSCISGKIID
                     CKTIAAVLMTVNLKDGLI"
     gene            3261..3557
                     /locus_tag="VD694_01580"
     CDS             3261..3557
                     /locus_tag="VD694_01580"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HXW11420.1"
                     /translation="MSEIRYKKLSGSELDEIVKSMHGWELKDGKLQKSFKFSNFVEAF
                     GFMTKIALEAEKINHHPEWSNVYNTVAIKLSTHDTDGITDYDIKLAKIIDNTNP"
BASE COUNT         1291 a          644 c          655 g         1209 t
ORIGIN      
        1 accaacgcaa ccaacgcaac caacgcaacc aacgcaacca acacaattaa catgacgtct
       61 cagggcaatt acgatgaaaa ggccttctat attctgatca agaccgaaaa caacaagact
      121 gtctttgtcc cagataaagt aacacttaca gctggagaca agatcatttg gattaaccaa
      181 gataattcag gacatagaat atccgtagga tctgattcta aaactggata tcaattaatg
      241 aatgtggcta tacctccaaa cggaatgctc gatcaccaat ttcaattgtc aggaacatat
      301 ttttcagttt tagacaatct gatctcaaag ggcgatatca ctattttaga caagggcaat
      361 gaagaccatg ctgtttcaat acctttagtg gactaatctg aaataattgt tgataaagta
      421 cattagtttg tttaccgatc agaaagacgc attagaattt catcatacgc tgttactttc
      481 tacttcgagt cttataatac caaaatatta tgatcattac tagaatcagt aaactaattg
      541 cgtatatgta attaattcct cttgtactat tagatttaat cagattggcc tctctagaaa
      601 tttcttccag ttggtattaa aaaaatattt gcctcagaat tttatgctct gttcaacaat
      661 tccttttctt tttctttgac tataggcttt actttgttca tgataatatg gtgaaagttc
      721 tttgtagtta catccaaagt aaatattatg acaaagcaca aatgatttct cgaatccgtt
      781 attggaatgg tgatccttaa taatttctcg taactagaac aagtataatc aattttacct
      841 aatattgact gccatcttat tctggtatat tgtctggtga ctgcagcaag tgcgtattgc
      901 gcagtttgct cttcattgag taatggttta attccttttc tttccgaaaa tgccaatatt
      961 gttccatgat gatcaacaat cgccgtaaac ctgatgtttt tttcggattt tgcaattgtt
     1021 tcacagagtg atttgaagaa atttgtcaca ggtagaaact gaatttccgg tataataaag
     1081 cttaaggcat ttataaagat gtattaataa attagaaaat ctaaagggct atgttggtga
     1141 aataccagat cggtaatata accgaaatta tacctaacct tctttctccg attcccgcat
     1201 tttcctggct aaaaactcca gtgcaaattt caaactcacg tcaaaatcaa ttactacgta
     1261 acgaccttct aaattttctt gatattcttt gtataagtaa ctaaatccgg aagggggaaa
     1321 taaatagacg ctcttagcaa agaatattct gcttttgtca tattctcgat gctagtaata
     1381 ttacgataag gaatctccaa cgttgagtta tttttcatga aacagaattc aaatctatca
     1441 tcatggagat aaacgttgat tccttccggg tctggaatag atacaaaccc gccaaaatat
     1501 ccggccattc ttaagtcaat agttcctaca ttctgattgg ttttgatgtg ccttttttat
     1561 tcttgtgtcc aaacattttc caatcgcatt aatccggttt agttattaaa gtatcttgtt
     1621 ttaccttatc ataagaaaat atgaaaaatc ctgacgttga aatttgcaat ttgctggaat
     1681 ccagaatgaa caaaacaatg taggaaataa ataaaaccga ttcaatattt gatgcggata
     1741 gcgaattaag aatattggat tggatatttt accaattgga taggcctgat ttgtgaatgc
     1801 cttcatagac aatcaatgat gtcttgattc ttgttgtaac tcacatttgt agtgttaatg
     1861 atgttccttt ggaatttggc caaacgttgg ggaaaacggt atcttttgaa ctccctaatc
     1921 caccacctag atgttagacc ccgataagtt accagaactc aaaaaataaa taacatcttt
     1981 ttccctagta ccaaatacga tgcctgattt ggattccaga agaacacttg caattgattt
     2041 ggattcagtt cttgcagata caatggttat ttgggtagaa gaattcaaca aacgaaataa
     2101 atcgaatata atcaaagacg atatcacttc ctgggacatt tcaaaaatac ttgacatttc
     2161 tattactgag gtatcggata tttttacata catttgggat aaacgctgga atgatatacc
     2221 acctacagaa ccctctattg gtaatactgt atcggacctg catagcaagg gatttagaat
     2281 ctccatcctg acaaaaagat atagatcttc agtggcgaat gtcataagat ggctggattt
     2341 ttacaaaatt cactgcgatg atctgttatt tgtctacgat gatgctccga agagcaatta
     2401 tccgtttgat atcctagtcg atgatgctcc catcaatttt agtgaattag tgcatcccag
     2461 gatgggaatc ctattcaatc aaccttggaa taagaacttt acctggccca tcaggataaa
     2521 cgcattaagt gaagctattg atctcgttta atttgatatt gcaaacttca tagtttgcaa
     2581 ttattgtcat gctattcata gcatagcgaa tcaattaccg agtctgagca aagaaagaat
     2641 aagtatcttt agaataattc ctaattttat ggatcagaat gctaaaatta gtagcagcaa
     2701 actttactct ggaaaaatat caatccgttt ggacaggtat tatttgggta acaagattgt
     2761 tgaaaaggaa atagttgaac attcagattc agtaggcata gttgcattag ataacaaaca
     2821 aaaaattata cttgtagaac aattcagaat agcttctgga aaaagtttac tggaaattcc
     2881 agcaggcaag attgaaaacg gtgaaactcc caaaatggct gcgttgcgtg agatgaatga
     2941 ggaaataggt tattctggaa atttgacacc tttgtttcaa tgttatctgg cacctggcta
     3001 tgacactgaa aaaatgtatt tcttcttggc gtcggatctg aaaatttcta aaaacaggct
     3061 tcctccggac gaggatgagg cgataagagt aagacggatt acattaagtt ctgctctaaa
     3121 aagttgtatt tcgggaaaaa taattgattg caaaactata gcggctgttt tgatgacggt
     3181 gaatcttaaa gatggattga tatagactat tttatgaaca tgaatgaaaa gtctataaaa
     3241 caaagaagag aatgtatacc atgtctgaaa taaggtacaa gaaactatct ggaagtgaat
     3301 tagatgagat cgtcaaaagt atgcatggat gggaattgaa agacggaaaa ttgcaaaaat
     3361 cctttaaatt ttcaaatttt gtagaggcat ttggtttcat gacaaaaata gcccttgaag
     3421 cagaaaaaat taatcatcat ccagaatggt caaatgtcta caatactgtt gcaattaaat
     3481 tgagtacgca cgatacggat ggaattactg actatgatat caaactagca aaaatcatag
     3541 acaatacaaa tccttaaaat caaatccctt ttataaagta aacagaagga ttgccaaaat
     3601 ttaaatcaac ttgaaccaga actattttta gttatttgtg gaaatattga ttattatagt
     3661 aactgaactt ctatgatgta agttccctga taaggtaata tctatttcac gtcagagtat
     3721 agagattaca tcgattcctt cgcacctttt tcattggtta gtaacacatt ctgcattaac
     3781 caatcgcaga attttacca
//
LOCUS       DASPFX010000071         5963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2043991, whole genome shotgun sequence.
ACCESSION   DASPFX010000071 DASPFX010000000
VERSION     DASPFX010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5963
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2043991"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            40..1905
                     /locus_tag="VD694_01585"
     CDS             40..1905
                     /locus_tag="VD694_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HXW11421.1"
                     /translation="MEQFDVAIIGGGTAGLSALKKLSDLNKSAILIEAGNGIGTKNVS
                     GGILYSKKDPQGKIYNVEDVFGSDFSSNAPVERLIKKYLLHATSKNKIFTIDMTPLHE
                     YKTNFAYSVLLNRLTPWLADLATESAEKNGGGIITGVHVSDIQWTDNKTIVRTNELEE
                     FEVKSIIAADGINSEVAQITSARGKFRPEEVYFGVKVIIKLPEKIIEERFHLDSSEGS
                     AHLFAGDITLNHIGGGFLYTNRETLSLGAVYHYNSLLSNPVMPSQLIDELIKNPLISE
                     YIKDEVTLKNSNVGLSKEDQLKAHLGVSKLIKTYNELRDTYYSNKNTKLIESGKFRTL
                     EEAKSKIDSIKHDLNEKFGVQFVNNYVELEYSAKLIPDGKRCMMKKPHFKNILFIGDA
                     AGRGIFIGPKIEGLNVGIDDAVRASIAISRSIESNNFDSDYLGNYYESLVNESPYTRE
                     MSMIDENYLNLFLESVKDIPVGAIDPSLSLGLQVMKNKYLRGISLRLANYFGSSRVLP
                     LIESEKTYVQMPIRLANKLGDTVNSTFVPSIPTLADRVANLQYDDDSESHIIVDDKRS
                     EFMRKLILLCPTKCYSLEGKDVVLQHEGCVECGTCSIGTIWRHPKGEKGIKYRYG"
     gene            complement(1902..2456)
                     /locus_tag="VD694_01590"
     CDS             complement(1902..2456)
                     /locus_tag="VD694_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HXW11422.1"
                     /translation="MAKTLSTQTLKKNDNAPSFRLKGTDDKFYSIEDFKSKCVLIIFI
                     CNHCPYVKARIGDLVDLQNKFSNSQLQIVGINSNDPAYQDEGFENMIKFSNENNLNFP
                     YLIDDTQQIAKLYGAVCTPDPFLFDENRRLVFHGKINDALEPEMTPQVHVMENNVKSV
                     LGGQTLEKDFDPSIGCSIKWKTDS"
     gene            2730..3668
                     /locus_tag="VD694_01595"
     CDS             2730..3668
                     /locus_tag="VD694_01595"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HXW11423.1"
                     /translation="MEAEKVINHTNDEISFEKILVVGLGQLGLPVAKYVKERGFDVYG
                     YDNNPFVMENAEKEYGIKKLDNFKDIDVFMICISTHRQDDISSPQIDGLMAITRKIAK
                     EAINGKLVSIESTIPRGTTRKMFEILEHRFHVVHAPHRWFALEEDVHGVNQLRVIGGV
                     CDCCLRIGIRFYDGVDHSGEKQDLEYYSGKKSYKSLGISMYSVSTVEIAELCKIVENA
                     DRYMQIAFAEDLYMFCKANGISFTELRDAVNTKWNVNILEPRDGIGGHCIPKDTRMFL
                     ESSEIKSKILIAAQEVDKDYRKYIQGMVKDINQVNH"
     gene            3802..4536
                     /locus_tag="VD694_01600"
     CDS             3802..4536
                     /locus_tag="VD694_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HXW11424.1"
                     /translation="MSSDKVRNSHKENLDKTGDNDDTAPTMYLNFSFYKVDSKWRWLN
                     DIGKEEAAKEFSSLIEVADTKMKVRTYSTLGLRKESDFMIWSISESLEKIQVLASKVY
                     STVLGKYIEASEVYLSTSRPSVYSNQVTPSFMKNDEPLKYNIVYPFIKSREWYLLPFD
                     KRSEMMKEHINVGKKFPLIRLNTSYSFGISDQDFMLAFETDNLMDFQDLIIKLRETQV
                     SRYVLKDTPMIVCVHKNIFDIIKSFG"
     gene            4539..5138
                     /locus_tag="VD694_01605"
     CDS             4539..5138
                     /locus_tag="VD694_01605"
                     /inference="COORDINATES: protein motif:HMM:NF020398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1802 family protein"
                     /protein_id="HXW11425.1"
                     /translation="MLALKEWSIICKALEDGNQTILLRKGGILEYKKGFEISQKSFLL
                     YPTLEHQAAELLQSKYLKTYKLILAENKSEQLEKKTNIVRSIARIEAIQEFHDQKLLP
                     KLEKYHIWNEKYVNTRMNYNPKKPMNALMLRVYKLPQPISIDVNPEWAGCKSWINIDT
                     SEKYEHQFGSVPEMFNQSEPVIKDKEFQKIFENFMEIWN"
     gene            5135..>5963
                     /locus_tag="VD694_01610"
     CDS             5135..>5963
                     /locus_tag="VD694_01610"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HXW11426.1"
                     /translation="MKYRRLGKSDIKVSEIGFGAWTIGLNWWGKKIEDDEAIRMLKRA
                     FDVGINFYDTGDIYGKGKSEKLIGIAFKDMRNEVVYSTKWGYDMYNAEQIGHNELPQK
                     HDTEYLQYALGQSLDRLQTNYIDVYSLHNPKMQAVTDVELFKSLDTLVTNGKIKSHGV
                     ALGPAIGWKEEGLHAIGEHNITCLQTVFNILEQDPGNALLEAAKEKNVGIMARVPDAS
                     GVLTGKVNEKTTFDKNDHRSVRKREWISEALKKVENMKTVSDKKGWDITELAIKFILS
                     "
BASE COUNT         2109 a          915 c         1178 g         1761 t
ORIGIN      
        1 aaagcatgtc aatacgattt ctttaaggag taattaattt tggaacaatt tgatgttgct
       61 ataataggtg gcggcacagc aggattatct gcactaaaaa aattatcaga tctcaataaa
      121 agtgcaattt tgatagaagc aggaaatgga ataggaacca agaatgtatc tggtggaatc
      181 ttgtattcta aaaaagatcc ccagggaaag atctataatg ttgaagatgt ctttggttca
      241 gatttttcat ctaatgcacc agtagagaga ttgataaaga aatatcttct gcatgctact
      301 tcaaagaata aaatattcac cattgatatg accccacttc acgaatacaa gacgaatttt
      361 gcatattcgg tcctactaaa tagattgact ccatggttag cagatttggc gacagaatct
      421 gcagagaaga atggtggagg aattatcaca ggagtacatg tttcagatat acaatggaca
      481 gacaataaga caattgtcag gactaatgag ttggaagaat tcgaggtaaa atcaataatt
      541 gctgcagatg gaattaattc agaggtagct caaataacat cagctcgtgg taaattcaga
      601 ccagaagaag tatattttgg tgtcaaagta ataattaaac ttcccgagaa gattattgag
      661 gagagatttc atcttgattc ctcagaaggc tctgcacatc tttttgcagg cgatattacg
      721 ctaaatcata ttggcggtgg ctttctgtat acgaatcgcg aaactttgtc acttggggca
      781 gtatatcatt ataattcact tctctcaaat ccagtaatgc cttcacaatt gatagatgaa
      841 ctaatcaaaa atcccctaat tagtgaatat atcaaagatg aagtcacgct gaaaaatagt
      901 aacgttggtc tttcaaaaga agatcaactc aaagctcatc tcggagttag caaattaata
      961 aaaacataca acgaattaag ggacacctat tattccaata aaaatacgaa attaatagag
     1021 tctggtaaat tcagaacttt agaagaagcc aagtcaaaaa ttgacagtat taaacatgac
     1081 cttaatgaaa aatttggggt tcagttcgtc aataattatg ttgaactaga atatagtgct
     1141 aaactaattc cggatggtaa aagatgcatg atgaaaaaac ctcatttcaa gaatattctt
     1201 ttcatagggg atgcggctgg acgtgggatc tttattgggc caaaaattga aggtctcaat
     1261 gttggtatag atgatgcggt cagagcctct attgccattt cacgttccat cgaaagcaat
     1321 aattttgatt ctgattactt gggaaattat tatgagtctt tggtaaacga aagtccttac
     1381 actagagaaa tgagcatgat agatgaaaac tatttgaatt tgtttcttga atcagtaaaa
     1441 gatatcccgg tgggagcgat tgatcccagt ttatcccttg gccttcaagt tatgaaaaat
     1501 aaatacctcc gcggaatctc cctgcgattg gcaaattact ttggatcaag tagagtttta
     1561 ccactcatag aatcagaaaa aacgtacgtg caaatgccaa tacggttagc gaataaattg
     1621 ggcgatactg ttaattccac atttgttcct tcaattccaa cattagctga tagagttgca
     1681 aatctacagt atgatgacga cagcgaatca cacatcattg ttgatgacaa aagaagtgag
     1741 tttatgagaa aacttatctt actttgtcct accaaatgtt atagtcttga gggaaaagat
     1801 gtggtattac aacatgaagg ctgtgtagaa tgtggaactt gctccattgg aactatttgg
     1861 agacatccaa aaggtgaaaa aggaataaag tatagatacg gttaggaatc tgttttccat
     1921 tttatagaac aaccgatgga tggatcaaag tctttctcca atgtttgtcc acctaatacg
     1981 ctcttgacat tattttccat cacgtgaacc tgtggagtca tctccggttc caaggcatca
     2041 tttatttttc catgaaatac gagtcttcta ttctcatcaa acaagaatgg atcaggcgta
     2101 caaacagctc cgtacaattt tgcaatctgc tgtgtatcat caataagata tggaaaattc
     2161 aagttgtttt cgtttgaaaa cttgatcatg ttctcaaaac cttcatcttg gtatgcagga
     2221 tcattactat ttataccaac aatttgtagc tgtgaatttg agaatttgtt ctgtaaatca
     2281 actaaatcac caatacgagc tttaacatag ggacagtgat tgcaaataaa tataatcaat
     2341 acacacttac ttttgaaatc ttcaattgaa tagaacttgt cgtcagtacc cttaagtctg
     2401 aaagaaggag cgttatcatt tttctttagt gtttgagtgg ataatgtctt tgccatatac
     2461 ataatttttt gacatgccta ataaattgtt caatttttta gtattatcga aaatcatgat
     2521 acacaagata tccgttttcc tatacgaaat ggctttattg gttttcctag ttatttcata
     2581 cattggtaat agattcacac tgttaaaaat tatgttagtt tcttctatta caaacatatg
     2641 atattatcaa tggaaatgaa tcagttctaa ggatttaacc catatacaat agataaatat
     2701 taatacaata tcatttgttt caaaattatt tggaggctga aaaggtgatt aatcatacca
     2761 atgacgaaat ctcgtttgaa aaaattttag tggtaggttt ggggcaactg ggtctccctg
     2821 ttgcaaagta cgtaaaggaa aggggttttg atgtctatgg ttatgacaat aatccgtttg
     2881 tcatggaaaa cgctgagaag gaatatggaa taaagaaact ggacaatttc aaagacattg
     2941 atgtgtttat gatatgcata tctacacaca gacaagacga tatctcctct ccacagattg
     3001 atggactaat ggccattaca aggaaaattg ctaaagaagc tataaatggt aagcttgtat
     3061 ctatcgaaag tactattccg agaggcacaa cacgtaagat gtttgagata cttgaacatc
     3121 gattccatgt cgttcatgcg ccccatagat ggtttgcgct agaagaagat gttcatgggg
     3181 taaatcagct ccgagtgatt ggaggggtct gtgactgctg tcttcgaata ggtattagat
     3241 tttatgatgg tgtggatcat tcaggagaaa agcaagactt ggaatattac agtggaaaga
     3301 aatcatacaa gagtcttgga atatcaatgt attctgtttc aaccgttgaa attgcagaat
     3361 tatgcaaaat cgttgaaaat gcagacagat acatgcaaat tgcatttgca gaagacttgt
     3421 atatgttctg taaagcaaat ggtatttcat tcacagaatt gagagatgca gttaatacca
     3481 aatggaatgt aaacatttta gaaccaagag atggtatcgg aggccattgt attccgaaag
     3541 atacccgaat gttcttggaa tcatctgaaa tcaaaagtaa aatattgata gctgcacagg
     3601 aagtagacaa ggattatcga aaatacatac aaggaatggt taaagacatt aaccaagtaa
     3661 accactaacc tttcttgttg ttcatcattt caaattattg atagtttttt taacaactaa
     3721 tttttgaatc tagttatcaa ttgatttaga ttattgaagc tctaaactta atttaaatat
     3781 tcataatatt tctacattat catgagttct gataaagtca ggaattctca taaagagaat
     3841 ctggataaaa caggagataa tgatgatact gcccctacca tgtatctgaa tttttcattt
     3901 tataaagtag attctaaatg gagatggctt aatgatatcg gaaaggaaga ggcagcaaaa
     3961 gagttttcat cactaattga agttgccgat acaaaaatga aggttagaac atattccact
     4021 ctaggcctta gaaaagaatc agactttatg atttggagca tctctgagtc gttagaaaag
     4081 attcaggtgt tagcgtcaaa ggtctacagt actgtccttg gaaaatatat tgaagcttcg
     4141 gaagtatatt tatcgacgtc acgtccgtcg gtttattcca atcaagttac acccagtttc
     4201 atgaaaaacg atgagccatt gaaatacaat atcgtgtatc cattcatcaa atccagagaa
     4261 tggtatcttc tcccattcga taaaaggagc gaaatgatga aggaacacat caacgttggc
     4321 aaaaaatttc ccctaatacg attgaataca tcctattcat ttggaataag tgaccaagac
     4381 tttatgctag catttgaaac tgacaatttg atggattttc aggatttgat tatcaaactt
     4441 cgcgaaacac aggtaagtag gtatgttcta aaagatacac cgatgatagt ttgcgttcat
     4501 aagaatattt ttgacataat caagagtttt ggatagtaat gcttgcactg aaagaatggt
     4561 ccattatctg taaggcgttg gaggatggca atcaaacaat tttgctgagg aagggaggta
     4621 ttttggaata taaaaaagga tttgagataa gccagaaatc atttttgcta tatccgactt
     4681 tggaacacca agcagcagaa ttattgcaat caaaatattt gaagacatat aaattaattt
     4741 tagcggagaa caagtctgaa caacttgaga aaaaaacaaa cattgtaaga agcattgcac
     4801 gaattgaggc gattcaagaa tttcatgatc agaagttact acctaaatta gaaaagtatc
     4861 atatatggaa tgaaaagtac gttaacacga gaatgaacta taatccaaaa aaaccaatga
     4921 atgcactcat gcttagggtt tacaagctgc ctcaacccat ttcaatagat gtaaatcctg
     4981 aatgggcagg atgcaagtct tggattaata ttgatacgtc tgaaaaatat gagcatcaat
     5041 ttgggagcgt accggaaatg tttaaccaaa gtgagccagt aataaaagac aaggaatttc
     5101 aaaaaatatt tgaaaatttt atggagatat ggaattgaaa tacagacgat tgggcaaaag
     5161 tgatattaaa gtaagcgaaa ttgggtttgg ggcttggaca ataggtctca attggtgggg
     5221 taagaagatc gaagatgatg aagcaattag aatgttaaaa agagcttttg atgtaggaat
     5281 caacttttac gatacaggtg atatctatgg gaagggaaaa agtgagaagc tgataggtat
     5341 cgcatttaag gatatgagaa acgaagtagt ttattctaca aaatggggat atgatatgta
     5401 taatgctgaa caaattgggc ataatgagtt accacagaag catgacacgg agtatttaca
     5461 atatgcatta ggtcagagtt tggataggct tcagacaaac tatatcgacg tatatagctt
     5521 gcacaatcca aaaatgcagg cagttacaga tgttgaatta ttcaagtcct tggatactct
     5581 cgttaccaat ggaaagatta aaagtcacgg cgtcgctctc ggcccagcaa tcggatggaa
     5641 ggaagaaggt ctgcatgcta ttggtgaaca caatattact tgccttcaaa cagttttcaa
     5701 tatacttgaa caagatccag gaaatgcctt actagaagca gctaaagaaa aaaacgttgg
     5761 aataatggca cgagttcctg atgcatctgg agttttaact gggaaagtta acgaaaaaac
     5821 cacgtttgac aaaaatgatc ataggagtgt caggaagaga gaatggatat cagaagccct
     5881 aaaaaaagtt gaaaacatga agacagtatc agacaagaaa gggtgggaca ttactgaatt
     5941 agcaatcaaa tttattctat ctc
//
LOCUS       DASPFX010000072         4401 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_762019, whole genome shotgun sequence.
ACCESSION   DASPFX010000072 DASPFX010000000
VERSION     DASPFX010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_762019"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1228)
                     /locus_tag="VD694_01615"
     CDS             complement(<1..1228)
                     /locus_tag="VD694_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit B''"
                     /protein_id="HXW11427.1"
                     /translation="MSQTTLDMWAIIHNILQKEGVARQHLNSYGEFIERGLQSIIDEV
                     GEIEIETAEYPYRIRLGKIKLQQPRIMELDGSVTHVAPVEARLRNLTYGSPIMLECSI
                     VEDDKILESRFIHIGDIPVMVKSNACILHNLPDTKLIELGEDPKDPGGYFVINGSERV
                     IIGLEDLSYNKIIVDTEETTGNLVYKAKVYSSIVGYRAKLELIMRPDGSIVAKIPGSP
                     VDIPLITLIRALGLESDKDIADGVSLNSIIQDELEPSFEKAGEIVTSRDAIVYISKRI
                     APGMLEEFQIKRAETLLDWGLLPHLGKNPENRNEKALFLGEATCKLVELRLSLVASDD
                     KDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGINAVAAAVRPGIISD
                     KLNNAIATGNWGRGRVG"
     gene            complement(1231..1482)
                     /locus_tag="VD694_01620"
     CDS             complement(1231..1482)
                     /locus_tag="VD694_01620"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit H"
                     /protein_id="HXW11428.1"
                     /translation="MSSDKKDIKITNHVYQPKHEILSKKEAEEVLKKYNTKPSQLPYI
                     LINDKGLEDLDVRPGDIIKITRTSFTAGESVYYRYVVED"
     gene            complement(1855..3486)
                     /locus_tag="VD694_01625"
     CDS             complement(1855..3486)
                     /locus_tag="VD694_01625"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HXW11429.1"
                     /translation="MEKKNHWYPVNFDLSANLIMLLVLVPLVLMGSNQVLLMPNAIAQ
                     EKTSECIQYEAKQKLIHVYCNSIHLSDIDEQLKNASILHSEANDGTTNDDNGKGKVWI
                     LNAGVVIEKHGELIIDSSDTSWLKLVPTPTVQPAKQLVPLVEENGTDTLDEEQIEGTV
                     ASNVSIENKTNINNNVIAIGNVSNDQQPILVSKNNANNPNGIHVRGSLVIDSVKITSW
                     DPEINDVIGFSYGKRPGEEHTKSDYDTAEPRAFIRVSKEATGTTNITNSELGYLGYSC
                     SRCAGLSYYGGEGSVIQGNDIHHLLKGYYSKSMGSTIIADNKFHDNYLYGIDPHTGSH
                     DMSILRNTVYNNNASGIICSKHCYNLLIEGNRVYNNTGVGRGIAFSINTTNSVARDNH
                     VSDQIRCISFNRNSNFNEIYNNTVSNCVNGFYLSNTTNNNIHDNIVHNVTHAFVMKDV
                     NNTINKNKVSDAESGIVYAYKQAPVGLDLTAIGSFPKERSYYQNILDNMAKNNTFSNT
                     ENVTWVKMLPLKNTTQIESIDVQNKTSAALNFMEE"
     gene            complement(3651..3977)
                     /locus_tag="VD694_01630"
     CDS             complement(3651..3977)
                     /locus_tag="VD694_01630"
                     /inference="COORDINATES: protein motif:HMM:NF025601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4342 domain-containing protein"
                     /protein_id="HXW11430.1"
                     /translation="MAKCAECGIELPQDAKYCPNCGTQTGLKKDVYEVSAGGLVGKVK
                     EIFQDASVKRIVIKDENGKVLLSIPVTWGTAGAVAMITLAPWLAALGVIAGIVARCKI
                     EVEKSP"
     gene            4162..>4401
                     /locus_tag="VD694_01635"
     CDS             4162..>4401
                     /locus_tag="VD694_01635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11431.1"
                     /translation="MDSEKDNDNKENELNNNSNNSINPEKKQRSLFKTIIIMIIAIAV
                     VVAASSLIEQLLEHRYGPYLKIGVVAVIGYFVINSL"
BASE COUNT         1272 a          861 c          734 g         1534 t
ORIGIN      
        1 caccgactct tccccttccc cagtttccgg ttgctatggc gttatttaat ttatcagaaa
       61 ttattcctgg tcttactgca gctgcaacag catttattcc tcgtttttga ccggaccttt
      121 ccagttgata tttcatatct cgtacaagat ttctaaatgc agttctaaag agatcagcca
      181 gcatttgacc tgcgaatttt atgaccttat taccgtaatg atctttatca tcagatgcaa
      241 ccaaactaag cctgagttca accaacttgc atgttgcttc tcctaaaaag agtgcctttt
      301 cgtttctgtt ctcaggattc tttccaaggt gtggaagcaa accccagtca agtaacgtct
      361 ctgctctctt tatctgaaac tcttctaaca ttccaggagc tattctcttg cttatgtaaa
      421 caattgcatc tctacttgtc acaatttctc ccgctttttc aaatgaaggt tccaactcat
      481 cttgtattat tgaatttaaa gatacaccat ctgcaatatc tttgtcagat tcaagaccca
      541 gtgccctaat taatgtaata agtggaatgt ctacaggaga tccaggaatc tttgcaacga
      601 tagacccatc gggtctcatt attagttcca gtttagctcg atatcctaca attgaagagt
      661 aaactttagc cttgtaaacc aagtttcctg tcgtttcttc tgtatcaaca attatcttgt
      721 tatatgacaa gtcttctagg ccaattatta ctcgctctga cccattaatt acaaaatagc
      781 cgccgggatc ttttggatct tctcccaatt cgataagttt agtgtcaggc agattatgca
      841 aaatacaagc atttgatttt accattacag ggatatctcc tatatgtata aatcttgact
      901 ctagtatttt gtcatcttca acaatactgc attcaagcat tataggtgat ccataggtta
      961 gatttcgaag tcgggcttca acgggggcca catgagttac cgaaccgtca agttccatta
     1021 ttctgggttg ttgtagctta attttaccca gcctaattct ataagggtat tctgcggttt
     1081 caatttctat ttcgccaact tcatctatga tactttgcag tcctcgctca ataaactccc
     1141 catatgaatt gaggtgttgt cttgctacgc cttccttttg taaaatgttg tggataattg
     1201 cccacatatc gagtgtagtt tgtgacatgg ttagtcctcc actacatacc tataatagac
     1261 actttcgcct gcagtaaatg acgttctagt tattttaata atatcgccag gtctcacatc
     1321 tagatcttct aatcccttgt cgttaattaa tatgtatggg agctgacttg gtttcgtatt
     1381 gtatttcttt aaaacttctt cagcttcttt tttggatagt atttcgtgtt taggttgata
     1441 tacgtgattc gttattttaa tatccttttt atcagaagac aaaattcgag attcttgatt
     1501 ccaaatctaa tgtccgtaat aaatacattc tcagataaaa tcggcaatta aatctgttta
     1561 agtgacattt tgaccttagt ttggagaaat aaggcaaaat taggtaaaaa cagagataaa
     1621 atgcggttaa agtcttgatt aactccaatt taaattgaca agctttgttc tgattttcta
     1681 gggaatttcc gattaacact agtgtctaga ttatttccca agatagcaat attcttagac
     1741 agatttgaca gtgcaataac ccggcgtaga ataaagatgt aggaagagcc tagcaagtgg
     1801 tttgcaaagt tcctattcaa actaaatatc taatcaaaat ttataaaatg cgcattattc
     1861 ttccatgaaa tttagggcag ctgaagtttt gttttgcaca tcaatacttt caatctgcgt
     1921 tgtattttta agcggtaaca ttttaaccca ggtcacattt tcggtatttg aaaatgtgtt
     1981 attctttgcc atattatcta gtatattttg ataataactc ctttctttag gaaaggaccc
     2041 aatagctgtt agatccagac caactggggc ttgtttgtat gcgtacacaa taccagattc
     2101 agcgtcactt actttgtttt tatttatagt attattgaca tccttcatga caaacgcatg
     2161 agttacatta tgcacaatat tgtcatgaat attattgttg gtggtattcg aaagataaaa
     2221 tccgttaaca cagttagaca ctgtgttatt atagatttca ttaaagttag aatttctatt
     2281 aaatgaaatg caccttatct gatctgagac gtggttgtct cgtgccacag aattagtggt
     2341 attaatgcta aatgctattc cccttcccac cccggtgtta ttataaactc tattaccttc
     2401 tatcaacagg ttatagcagt gttttgaaca aattatacca gatgcgttat tgttgtatac
     2461 agtgttcctt agaatagaca tatcatgact tcccgtgtga ggatctattc catacaagta
     2521 attgtcatga aatttattat cagcaataat ggtgctgccc atactctttg aataatatcc
     2581 ctttagaaga tgatggatat cattaccttg tatgactgaa ccttccccac catagtaact
     2641 aagtccagca catctgctgc atgaataccc caggtatcct agctcagaat tggtaatgtt
     2701 tgttgttccc gttgcttctt tggagactct aatgaaggct ctcggttctg ccgtatcata
     2761 atcagatttt gtgtgttcct cgccaggacg ctttccatac gaaaatccaa ttacgtcatt
     2821 tatctcaggg tcccatgaag ttatttttac agagtctata actaaagagc cacgaacatg
     2881 gattccattt ggattattag cattattctt gcttactaat atcggctgtt gatcgttact
     2941 cacattacca atggcaataa cattattgtt aatgttagtt ttattttcga tactgacgtt
     3001 tgaagctacc gttccttcaa tttgttcttc atcgagtgtg tcagtcccgt tctcttccac
     3061 aagcggtact agttgctttg caggttgaac tgtaggtgtt ggaactaatt ttagccagct
     3121 agtgtcagaa gagtcaatta ttagctcccc gtgcttttca atgacaactc cagcgttcaa
     3181 tatccaaact ttacctttgc cattatcatc gtttgttgtt ccatcattgg cttctgagtg
     3241 taatatgctt gcatttttca actgctcatc gatatctgaa aggtgaatcg aattgcagta
     3301 aacatgtatt aatttctgtt tagcttcata ctgtatacat tcactagttt tttcttgagc
     3361 aatggcattt ggcattagca gtacttggtt tgatcccatt agtacaagag gtacaagaac
     3421 taatagcatt atcaaattgg cagataaatc aaaattcacc ggataccaat gatttttctt
     3481 ttccatatat attattttag tatatttttt ctaattttga gagtaatttg tttctagatc
     3541 aatgatatgg aaaaaacata gaaaagacat caataatgga aatggcaatt ggtttaccat
     3601 tataagataa cgaaaaacca agttttgtat ctataggtat ttgatcagga ttagggagat
     3661 ttttctacct caattttaca tctagcgact atacctgcta ttactccgag ggctgctaac
     3721 catggcgcaa gtgtaatcat tgcgacagca cccgcggtac cccatgtcac gggaattgaa
     3781 agtaggactt taccattttc atcttttata acaatgcgtt ttacacttgc gtcttgaaaa
     3841 atctctttta cttttccgac caacccgcct gctgagactt catagacatc cttctttaat
     3901 ccggtctggg ttccgcaatt tggacaatat ttagcatctt gtggaagctc aatcccacat
     3961 tctgcacatt ttgccattct tttataatag catactgtca tcgctttaaa tctttagaat
     4021 caccagaaga gggcttcaag acctagtcac acctaggcac aattgatact gactgatctc
     4081 aatgcaaaca cagaaaatta caaaatttac taagcaattc atgaaaattt gaaatatagt
     4141 tagtatgtta acatccatat cgtggacagt gaaaaagata atgacaataa ggagaatgaa
     4201 ttgaataata attccaacaa ttctattaat ccagaaaaaa aacagcgttc tctctttaag
     4261 acaataataa tcatgatcat cgctatagca gtcgtagttg ctgcaagtag tcttattgag
     4321 caacttttag aacatagata tggaccctac ttaaaaatag gggttgttgc cgttatcgga
     4381 tactttgtga ttaattccct t
//
LOCUS       DASPFX010000073         3909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_147924, whole genome shotgun sequence.
ACCESSION   DASPFX010000073 DASPFX010000000
VERSION     DASPFX010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147924"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            241..1341
                     /locus_tag="VD694_01640"
     CDS             241..1341
                     /locus_tag="VD694_01640"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HXW11432.1"
                     /translation="MEKSWSDIGLVDSLKDPPLREITVQGKPVALSYKDGQFGAILGV
                     CTHVGGPLGKGKLEGDYIVCPWHYWQFHRTTGSAQPGYEDKVSQYELKIENNHLFINT
                     VPITKGHKSVHPPHLLARDVTREEGPIRVVGISTTIMDSKNPRYSTSDKLLEVAINHA
                     KNELGAQTMFIRLNDLKFRACEGFYSKSAFACTWPCSITQMDETDQLTQVYEALIHWA
                     DVVIVATPIRWGAASSLYHKMIERMNCVQNQITINNKVLIQNKIASFIITGGQDNVQD
                     VAGHMLGFFSEIGFVFPPFPFIAHTRGWDAEDMENNIAYVAESDDLKNGAKDLVRRSI
                     DMAKIVLQQHLSQEEIVKAGRKAQHLTINEEL"
     gene            1860..3026
                     /locus_tag="VD694_01645"
     CDS             1860..3026
                     /locus_tag="VD694_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HXW11433.1"
                     /translation="MNLGIELLGDLAFLLIACAGVGTLAYVLRQPLILGFLAAGILIG
                     PFGPFSLIKNIDMLNNFSDIAIVLLLFGVGLTFPLSKLRNVGKVGVTIAVIEVMVMLG
                     IGFVIGQLFGWSFYDSMFLAAALSISSTAVIIKVLEDRGSIETTSGMLLTGVLIIEDI
                     IAIILISTLHSGVVTGSFEYSVVIWTIAKIGIFFAVTLGLGILLVPKLFGLIAKLERF
                     EITMTLALGLAFGLSFLTHELGFSAATGAFLAGVMIAGSKFSDDVSTLITPIREVFVA
                     IFFVTIGALMNLSAIGTFWIPIIVITILTIFGKILGVYMGVKLFGSGKQYALAIGLSM
                     ASLGEFSFIVLKTGMDLGVVSDNLFPIVGMVVVLTTFLGVLMAKKGIKTVELYE"
     gene            3147..>3909
                     /locus_tag="VD694_01650"
     CDS             3147..>3909
                     /locus_tag="VD694_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HXW11434.1"
                     /translation="MEFDIVSILGPISNKILAEPTHSELIVQDFAVIMIIASVMALIS
                     FKLKQPMVIAYIAAGMIIGPYTPPFSLITNLEILNVFAEIGIIVLLFVIGMGFPIEKL
                     KNIGKKATIIASAEALGTFALGYFAAQAMGFSSFDSMFVALAISVTSTVIVMRVLEEM
                     GLVDDKSFNLIVGVSIIEDIIIISMLAVIQSVVATEQLSYTEVGVAIGFVLAFIIGAI
                     VVGTRTVPYYARIVRKTRHNEFILVAMLGLAFGLSV"
BASE COUNT         1231 a          588 c          755 g         1335 t
ORIGIN      
        1 gtgttgctaa caataatttg gtttgaacac tttgggcatt tttccatgtc tatgttatgt
       61 tttggttatt cattagttca ggtaacaaaa ttagctgtat tttcacagtt atagctgaac
      121 aaaatagacg caagatcttg aaaaattcta aaacagcttg ataaatgggt tgaacaaaga
      181 aaaactcaca aagaaataac aacacaaatc cttttaattt tacattgtta ataatcaaca
      241 ttggaaaaaa gttggtcaga tattggttta gttgactcgc taaaagatcc gccattaaga
      301 gaaatcacag tgcagggaaa acctgttgca ttatcataca aagacggaca gtttggtgca
      361 atattgggag tatgtacaca tgtcggagga ccacttggca aaggaaaact agaaggagat
      421 tacattgtat gtccttggca ttattggcag tttcatagaa caacaggttc tgctcaacca
      481 ggatatgaag acaaagtttc acaatatgag ctcaaaattg aaaacaatca tcttttcatc
      541 aatactgttc caataactaa aggacacaaa agtgtacatc cacctcatct gcttgcaaga
      601 gatgtaacac gagaggaggg tccaatcaga gtggttggaa tatcaactac aattatggat
      661 tctaaaaatc cacgctattc gacttcagat aaattacttg aagttgcaat taaccacgca
      721 aaaaatgaac ttggagcaca aaccatgttt atccgcctaa atgatttaaa attcagagcg
      781 tgtgagggat tttattctaa aagtgccttt gcttgcactt ggccttgctc cattacacaa
      841 atggatgaga cagaccagct tactcaggtg tatgaggcat tgattcattg ggctgatgtg
      901 gtaattgtcg caacacctat tcgctggggt gctgcaagtt ctctatatca caaaatgatt
      961 gagaggatga actgtgttca gaatcagatt acaataaaca acaaggtttt gattcaaaac
     1021 aagattgcct cttttatcat aactggagga caggacaatg tacaagatgt tgcagggcac
     1081 atgttgggat ttttttcaga gattgggttt gtgtttcctc catttccatt tattgctcat
     1141 acgagaggat gggatgcaga agacatggaa aacaatattg cttatgttgc agaaagtgat
     1201 gatctaaaaa atggcgcaaa ggatctagtt cgaagaagca tagatatggc aaaaatagta
     1261 ttacagcaac atctaagtca agaagaaatt gtaaaagcag gaagaaaggc ccaacatctc
     1321 acaattaatg aagagttata gcgacataat gaagataatt cgaaaaaatg aacacctaca
     1381 ttagagcata cccccactct atttttttga tatatccata acataacaag aatttctttt
     1441 ttatttttaa atcaattttc acacctatct gcgtccattt tatttcccat aatggtggtc
     1501 gagttcctgt ggaattgaat ctatagtggg agtatctaac taacttgaca gaactcatta
     1561 atggtattcg ttgatcttag ccttatctcc aattcctact agattttcta ttcagaactt
     1621 ttttattaat tttttctgtt tctttcaata attagtaata ttatacattt tcttgtattt
     1681 tctttaagaa ttagatcaga ttcatttaaa attttattaa aataagatat ttttatcttt
     1741 gaatttaatt gcgatttcac tcttcattca aatagataaa aaataacact gcaaataaaa
     1801 tattttgaca tctgataata tgcttatggt gttgaatctc tcgttggtca tatgtctcaa
     1861 tgaatttagg gattgaacta ctgggggatc tggcattttt gttaatagca tgtgcaggtg
     1921 taggaacact ggcatatgtt ttacggcagc cgttgattct tggctttctt gccgcaggta
     1981 tactgattgg tccgtttggt ccgttcagtc ttatcaaaaa tattgacatg ttaaataatt
     2041 tttcagatat tgcaatcgtt ttgttattgt ttggtgttgg attgacattc cccttatcta
     2101 aattacgtaa tgttggaaaa gttggagtta caattgcagt aatcgaggta atggtaatgc
     2161 ttggaatcgg atttgtaata gggcagttgt ttggatggtc cttttatgat tcaatgttct
     2221 tagctgctgc tctatcaatc agttctacgg ctgtaataat caaggtattg gaagatagag
     2281 gaagtattga aactacctct ggaatgttat tgactggggt tttgataatt gaagacatta
     2341 tcgctataat cttgataagt acattacatt ctggagtagt tactggttct tttgaatatt
     2401 cagtcgtaat atggacaatt gcaaaaattg gcatattttt tgcagttacg ctaggtcttg
     2461 gaattttgtt agttccaaaa ttgtttggtc ttattgcaaa actagaaaga tttgagataa
     2521 ctatgaccct tgcattagga ctagcatttg gcttgtcttt tctgactcat gaacttggat
     2581 tttcagctgc cacgggagca tttttggcag gtgttatgat tgcaggttct aaattttctg
     2641 atgatgtatc tactctgatt actccaattc gagaagtctt tgttgcaata ttttttgtaa
     2701 cgattggcgc tttgatgaac ttatctgcaa tagggacatt ttggattcca attattgtga
     2761 ttacaatatt gacaatattt ggaaaaattc ttggtgtgta tatgggagta aaactttttg
     2821 gcagtggcaa acaatatgca cttgcaattg gtctaagtat ggcatcatta ggagaatttt
     2881 cttttattgt gttaaaaaca ggaatggatc taggagtagt gagtgataac ctctttccga
     2941 tagttggcat ggtagttgta ttaactacat tccttggtgt attgatggca aaaaaaggaa
     3001 taaagacagt agaactatac gaatgataaa aattttaaaa gatactaaaa tgtacgatta
     3061 acatattcaa ttactcattg tgttgatttt agatattata ttcgataaat gatttagttt
     3121 atttaacata aaattaagaa agttatgtgg aatttgacat tgtttccatc cttggaccaa
     3181 tatcaaataa gattcttgca gaacccactc attcggaatt aatagttcaa gattttgcag
     3241 tcataatgat aattgcatct gtcatggcac tcatttcatt taagctaaaa caaccaatgg
     3301 taattgcata tatcgctgca ggaatgataa ttggtccata cacccctcct tttagcttaa
     3361 ttacaaatct ggagatcctc aatgtttttg cagaaattgg aattattgta ttgctatttg
     3421 taattggaat gggatttcct atagaaaaac tgaaaaacat tggaaaaaag gcaacaatta
     3481 tcgcatctgc ggaagcttta ggaacttttg cgttaggtta tttcgctgct caggctatgg
     3541 gcttttcttc atttgatagc atgtttgtag cacttgccat ctctgtaaca agcactgtga
     3601 ttgtgatgcg cgttttagaa gaaatgggat tagttgatga taaatcattt aatcttattg
     3661 tgggtgtttc gataattgaa gatataatta taatttctat gttagctgtt atacaatccg
     3721 ttgtagctac cgaacagtta tcttacactg aagttggtgt ggcgattgga tttgttcttg
     3781 cattcataat tggagcaata gtggtaggaa ctagaactgt tccatattat gcaagaattg
     3841 taagaaaaac cagacataat gaattcatac ttgtagcgat gcttggtctt gcgtttggat
     3901 tatcagtgc
//
LOCUS       DASPFX010000074         9586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2046427, whole genome shotgun sequence.
ACCESSION   DASPFX010000074 DASPFX010000000
VERSION     DASPFX010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9586
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2046427"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VD694_01655"
     CDS             <1..243
                     /locus_tag="VD694_01655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11435.1"
                     /translation="CVDEKLQLPEIRRSDDTLQRNINFFKYSNLVRVNQFENSTNLNY
                     MKYELIILMELGICEMWLKRFKLQYLRLITIGETIQ"
     gene            316..1281
                     /locus_tag="VD694_01660"
     CDS             316..1281
                     /locus_tag="VD694_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HXW11436.1"
                     /translation="MIIVKNLVKKYADFKALNGLSFEVNENEIFGLLGPNGAGKTTLI
                     HILATLLKPTEGGAVVNGFDVLHDAIKVRQSIGVVFQAPSSDDILTGYENLKVHALLY
                     GIPRKIRENRISEVLQLVGLEDRKNDQVKKYSGGMRRRLEIARGLLHHPKVFFLDEPT
                     LGLDPKSRESMWEYIKKIVREEKVTIILTTHYMEEADMLCDRIGFITNGKIIALDSPS
                     NLKQELGGDIVKITFSGKIPLDKDFTKFDFVHKVEQKENSMIIYMEEVNSNLHMLIKD
                     LDGVKTVEYSKPTLNDVFLKLSGDSLSGDSPEGGFMQRYAQYDKS"
     gene            1259..2038
                     /locus_tag="VD694_01665"
     CDS             1259..2038
                     /locus_tag="VD694_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HXW11437.1"
                     /translation="MLNTINLSSRIVLGQLYALWLREVKVFLREKSRLVASTFTPLLW
                     LFVIGSGLGSTNLQIGTDYEKFIFPGIICMSVIFTSVFFGAYIIWDRKFDFLKSVMVA
                     PSSRTTVFIGKTLGGMTTSLFQVAIVLAVGIALGINYDAVILLQILSIVLILSFCLTS
                     LGLTFGSYIESLEGFQLIVSFVVFPLFFLSGALFPINNLPAWLKIITLIDPATYSVDA
                     LRNSILHLGTYSFEHDFAVLLLFTLIITIVGIFSFKRMKAV"
     gene            complement(2177..2446)
                     /locus_tag="VD694_01670"
     CDS             complement(2177..2446)
                     /locus_tag="VD694_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11438.1"
                     /translation="MLKRKISENYTNIILEEYYFEMRKKGTSKRKVTGKELSLQDELD
                     IKITTLIELLEAKGFLSKGEFERMTAMRLHEISKARAFEDLDKEI"
     gene            complement(2517..2819)
                     /locus_tag="VD694_01675"
     CDS             complement(2517..2819)
                     /locus_tag="VD694_01675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11439.1"
                     /translation="MDFFEMDRVLDELVRTFAAPSATTWFKVTGNKSPTQNEYRIKVV
                     EFMNLFENTLSTGFRDYPNSKELSELVKKRVKDFADEILPGNNKDVEKRYKYYVEH"
     gene            2864..4057
                     /locus_tag="VD694_01680"
     CDS             2864..4057
                     /locus_tag="VD694_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11440.1"
                     /translation="MVSYLKPAFGVIRINLSKDIDLYILNLNGELSPSLSSSSALLLI
                     YFLIALGVALQVGAANWDIIWHGVVNVESFFTPPHTVLYSGVGLSLVATFVGIVISIK
                     QKTSLSPFSIYRNIPNPLKLILLGCLVELFSGGFDNWWHTNFGFDGLLSPPHLMLISG
                     MLISILGALIGTHLFESRKKFKIMSEMICYGIIWMITINFVFMFTLPFSDGQYFDFNP
                     SPTAALILGSTLPSIFTAVIFYSVQNIQFPFRMTVVTATLMTIQSSATITSNNYFMSL
                     LPLYLLNILIPISLDILSIFTRNNKNVSVKSNDHKRIIFSVAISFFFVTMYFPWSVNM
                     FKSFFGINLITFQSVMIFEQLLWKFILPILVPVSFVSAYLGLLIWKKLCEHSKLTNMF
                     KVVVE"
     gene            4376..4678
                     /locus_tag="VD694_01685"
     CDS             4376..4678
                     /locus_tag="VD694_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11441.1"
                     /translation="MDNKEFLAFQLIWIVISIAISVTVSLIVPFPYSWVIIIGIFLLM
                     GFYMRNRMAKSAGAGMFGSLSSPFSGNSVNYYCMSCGTKHREASCPRCGSKMKRVG"
     gene            complement(4765..5712)
                     /locus_tag="VD694_01690"
     CDS             complement(4765..5712)
                     /locus_tag="VD694_01690"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HXW11442.1"
                     /translation="MWYSNKAPSIERKYSKSILRYFKVGSHVGMTINPYQGCHHRCGY
                     CYATYKWSPDFYDKIYGKINAPEILESELNKWKNISMLPVMISSATDAYQFAEAKYGI
                     TKKCINVLQQFQIPFYVFTKSCLIERDLNLFRNYNSNCFIVWSITTIDENIKRIIEPG
                     TPPTRRVFETIKKFVDSGINCCVNIDPIIPYVTDSEEHIRSIVDTCHKLGIRYISGSI
                     LRLRNDIWVRIREILELLGISWSVEEYKRIFGFQEPFMNDNNLSAGTIYSDNVIKFLK
                     DELSRRNIVFGFDKLIQCITKTKLEYAISTKQSRISEFV"
     gene            complement(5789..6148)
                     /locus_tag="VD694_01695"
     CDS             complement(5789..6148)
                     /locus_tag="VD694_01695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11443.1"
                     /translation="MALKEILLPQENIMFRTKTKLKCTEKKYNIIITNFRVLLYSERG
                     RLFKSPDVISERLESIYGIEYNEEGIFFKTSKIRIQGGIRFEISGPLSEVKPVFNFIQ
                     TIINRADNTIVRRLDET"
     gene            6747..7067
                     /locus_tag="VD694_01700"
     CDS             6747..7067
                     /locus_tag="VD694_01700"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HXW11444.1"
                     /translation="MEGIHNAILQMPVGYEVLIIIVIIVVLFFGVKKIPELARSFGKA
                     TAEYEKARIEAKKELAQIKGSDKIGREKLEEIAETLGIDYTNKNDDELRKAIEGAVNK
                     EKNS"
     gene            7162..8259
                     /locus_tag="VD694_01705"
     CDS             7162..8259
                     /locus_tag="VD694_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase family protein"
                     /protein_id="HXW11445.1"
                     /translation="MIGADIISKIIENYDVKNIHLAVIGSHSALEIMDGAKDEGLKTV
                     CICQKGRELPYLRFKRLVDEIILVDKFSDLLFKENQDKLRGISGVVVPHRAFTAYLGY
                     DSIENELKLPILGNRNLFRAEERNANRNQYYLLERAEINHPKIYNKYSDIDGLAIVKI
                     QESKRKLERAFFIVSSAQDYLDKSQNKIKEKMITKEDLDSSVIEQFIVGTYFNFNFFT
                     SPLTTETEFLGIERRLQTNLNDLNGLPAREQLEFETEVRHIEIGHTPASIRESMLQKV
                     FELGDKFANAVRKEYPPGLIGPFSLQSIVTPDLGIVVYDVSLRVPGNPIMATTSPYTK
                     YSYGHTFGIGRRIAMEVNKAIASNKLSAIAT"
     gene            complement(8270..8695)
                     /locus_tag="VD694_01710"
     CDS             complement(8270..8695)
                     /locus_tag="VD694_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease domain-containing protein"
                     /protein_id="HXW11446.1"
                     /translation="MDETFTSEGFVTASISFVGFVDKLGLEGLLTLKSDDGREFPIRA
                     FSGEVARHILRFREGDKSTIPTIYNLIEEISALQDLLLVEVRIYRNGPVLRSNLYFKT
                     RKEIITLRNYRASDSIALAAFFDVPIKVRKNLFEETIEQ"
     gene            8955..>9586
                     /locus_tag="VD694_01715"
     CDS             8955..>9586
                     /locus_tag="VD694_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11447.1"
                     /translation="MASAVITLVMISLVAIGYGSYLVIRSEASRPEPKKNYLGYISRI
                     LTQKTYWRIFVVSCIVYGIFFGFLSQILIYHTDVEDDTAPSLYLTLCCNYPGYVPMLT
                     VELTELFSILIIPINLILAIVVSILVGFNFALNLHFLRMFRNQSQRRFPIASTFGVFT
                     GLFIGCPTCAGSLFTMFVGFGTSTLVSALAPLQSMFIAISIPILVVIPLL"
BASE COUNT         2941 a         1663 c         1726 g         3256 t
ORIGIN      
        1 tgtgtcgatg aaaaacttca gctcccggaa attaggagga gtgatgatac tcttcaacgt
       61 aacattaatt ttttcaaata cagtaattta gttcgagtca atcagtttga aaattctaca
      121 aatctaaatt acatgaaata cgaactcata attctaatgg aattgggaat atgcgaaatg
      181 tggctgaaac gattcaagct ccagtacttg cgcttaatca caattggtga gacaatacaa
      241 tgatcaagac tacctctcat aaagcaagtg aagttgctaa tgatatttta atgggctttc
      301 aaacaactta gttacttgat aattgtaaag aatcttgtca agaaatatgc agatttcaaa
      361 gcgttgaatg gcttgagttt tgaagtcaac gagaatgaga tatttggact tttggggcca
      421 aatggggcgg gtaagactac tctcatacat atactggcta cattgctaaa accgactgag
      481 ggtggagctg ttgttaatgg ttttgatgtc ttgcacgatg ctattaaagt aagacaaagc
      541 attggtgtcg tttttcaagc tccaagcagt gacgatatcc ttacagggta tgaaaattta
      601 aaggtacatg cgttactcta tggaatacct agaaagataa gagaaaatag gatttcagag
      661 gtactacaat tggttggatt agaagataga aagaatgacc aggtaaagaa atactccggt
      721 ggaatgagaa ggcgattgga aattgctcgg ggactattgc atcatcccaa agttttcttc
      781 ttggatgaac ccacattggg tttagatccg aaaagcagag agtccatgtg ggaatacatc
      841 aaaaaaatag tacgagagga aaaggttact atcattttaa ccacacacta catggaggaa
      901 gctgacatgt tgtgtgatag aattggtttc attactaacg ggaaaataat tgcactagat
      961 tcaccgtcaa atctaaaaca ggaacttgga ggggatattg taaagataac attcagcggt
     1021 aaaatccctc tcgacaaaga ttttactaaa tttgattttg ttcataaggt ggagcagaag
     1081 gaaaactcca tgatcattta catggaagaa gtaaattcaa acttgcatat gttaattaag
     1141 gatttggatg gtgtcaagac cgtggaatat agtaagccta cattgaatga tgtcttcttg
     1201 aaactttcgg gagattcctt atccggagac agtccagaag gggggttcat gcaaagatat
     1261 gctcaatacg ataaatctta gttcaagaat agtattagga cagctctatg cattatggct
     1321 tagagaggtt aaggttttcc tacgtgagaa aagcagactt gtcgcttcta ctttcactcc
     1381 attgttgtgg ttatttgtca taggatccgg actaggttca acaaatctgc aaataggaac
     1441 agattacgaa aaatttattt ttcctggtat catctgcatg tctgttattt ttacctccgt
     1501 tttttttggc gcatatatca tttgggacag aaaatttgat tttctgaaga gtgtaatggt
     1561 cgcaccgtcc agcaggacta cagtatttat tggaaaaact cttggtggaa tgacaacttc
     1621 actgtttcag gtcgctatcg tacttgctgt tggtattgct ttggggataa attatgacgc
     1681 agtgatatta ctccaaattt tgtcaattgt cttgattctc tcattttgtt tgacttcgtt
     1741 aggactgacc tttggaagtt atattgagag cttggaagga tttcaattaa ttgttagttt
     1801 tgttgtattt cctctattct ttctaagtgg agcacttttc ccaattaaca atttgcctgc
     1861 ctggttaaag atcattacac ttattgaccc tgcgacatat tcagtagatg cattaagaaa
     1921 cagtatacta catttaggaa cgtattcttt tgagcacgat tttgctgtac tattattgtt
     1981 tactttaatt attaccatag tgggaatctt ttcatttaag agaatgaaag ctgtctgata
     2041 tcaactaata ggagtcatta tctttcaatg tgctagagta gactataatt atttactaca
     2101 tcgtataaat aatcaatatc tagataaatc tgacactaac aatgagtatt aattctacat
     2161 gttatcgaat tgctactcag atctctttat ctagatcttc aaatgctctt gccttcgaaa
     2221 tctcgtgtaa tcgcatagct gtcattctct caaattcacc cttgctcaaa aaccccttag
     2281 cttctagtaa ttctattagg gtagtaatct tgatatctaa ttcatcctgc aatgataatt
     2341 ccttacctgt aacttttctt tttgatgtac ctttctttct catttcaaaa taatattctt
     2401 ctaatatgat attagtgtag ttctcgctaa tttttctttt tagcaatgtt aaaaataacc
     2461 ttcgagaaat aatcgatgcc aaatgcattt ggcaagttga ctatctctca aacctatcaa
     2521 tgttctacgt agtacttgta ccttttttcc acatccttgt tattacctgg caatatttcg
     2581 tcggcaaagt ccttcactcg ttttttcaca agttctgata attccttaga gttaggataa
     2641 tcacgaaaac cagttgatag ggtattttca aacaagttca taaattcaac tactttaatt
     2701 ctatattcat tttgtgtagg cgacttgttt ccagttactt tgaaccatgt cgttgcactt
     2761 ggggctgcaa atgtgcggac cagttcatcc aataccctat ccatttcaaa aaaatccatt
     2821 acacattcac tatatctttg tatattctgg aacgtataag ataatggttt cttatcttaa
     2881 gcctgcgttt ggtgtgataa gaataaattt gtccaaggat attgatctct atattttgaa
     2941 cttgaatgga gagttgtcgc cgtcgctatc atcttcatct gctttactct tgatctattt
     3001 tctaatcgca ttaggggtgg ctcttcaagt aggagctgct aattgggaca tcatatggca
     3061 tggtgttgta aatgttgaat cattctttac tcccccccat acagtattgt actccggagt
     3121 aggtttatcc ctagtcgcta cctttgtagg gatagttatt tcaataaagc agaaaacctc
     3181 attgagcccc ttttcaatat atcgtaatat tccaaatcca ctaaaactaa ttctcttggg
     3241 atgtcttgtg gagctgttct ctggcggatt tgataattgg tggcatacaa attttggatt
     3301 tgatggacta cttagtcctc cacatcttat gcttattagc ggaatgttga tttcgatttt
     3361 aggtgcgcta attggaacgc atttgttcga atctcgtaaa aaattcaaga taatgtctga
     3421 aatgatttgt tatgggatca tatggatgat tactattaat tttgttttca tgtttaccct
     3481 tccattttca gatggtcagt actttgattt caatccctct ccaacagctg cactgatatt
     3541 gggatctact cttccttcga tttttactgc agtgattttt tattcagttc aaaacatcca
     3601 atttccattt cgaatgactg tagtcacagc caccctaatg actatccaat cgtctgcaac
     3661 aattacttca aataattatt tcatgagtct actgcctctt taccttctga acatactcat
     3721 acccatatcc ctagatattc tctctatttt tacacgaaat aacaagaatg tgtctgtcaa
     3781 atccaatgat cacaaacgta ttatattctc ggttgccatt tcgtttttct ttgtcacgat
     3841 gtattttcca tggtctgtga atatgtttaa atcgtttttt gggataaatc taataacttt
     3901 tcaaagtgta atgatatttg aacaactatt atggaaattc attttgccga ttttggtgcc
     3961 tgtttccttc gtgtcagcat atttagggtt attgatttgg aaaaagttat gcgaacactc
     4021 caagctgact aatatgttca aagttgtagt tgaataatag ctccctgttc ttgggtccgt
     4081 cttcttccaa ttcttagata cgctattttt gaattttgaa tccactgtta caactattcc
     4141 cacttcgcat tttacagaac aatacattcg aagtatttcg taaaactaga gtacaaaaat
     4201 ctctggtagt tggccgaaac caaaagctga ataaattcta gcatactgtg gaaaataagt
     4261 ctagtgagaa tgcattttaa taaaatactg taataatgat atggtatttg gataatactg
     4321 gggttcaaaa tagttaacct taataatctt gtttaatcaa ttattatatt gaagcatgga
     4381 caataaagaa tttcttgcat tccaactaat atggatcgta atctcaattg ccataagcgt
     4441 aacagtgtca ttgatagttc cgtttcctta ttcatgggta atcattattg ggatttttct
     4501 tttgatgggt ttctacatgc gaaataggat ggccaaaagt gccggagcgg ggatgtttgg
     4561 ttcgctatcc tcgccatttt ctggaaattc agttaactat tattgcatga gctgtggaac
     4621 aaaacataga gaagcctcat gtccaagatg tggctcgaag atgaaaagag tcggataagc
     4681 tagaactttc ataggcctga ttatagttta tgagaatact aattaattca ggccttccta
     4741 aataattcac gaacggtttc ggagtcagac aaattcactt attctagatt gctttgtaga
     4801 tatcgcatat tccaacttcg ttttagtaat acattgtatt agtttatcaa agccaaatac
     4861 aatgttcctt cttgaaagtt cgtctttaag aaatttgatt acgttgtcac tatagattgt
     4921 acctgcgctg agattattgt cattcatgaa aggttcctga aaaccaaata ttcttttata
     4981 ttcttcaaca ctccacgata ttcccagtaa ttcaagtatc tctctaatcc taacccaaat
     5041 atcatttctc agcctaagta ttgatccgga tatgtatctt atacccaatt tatgacacgt
     5101 atcaacaatt gatcgaatgt gttcctcact atcagtaaca tatgggataa tgggatcaat
     5161 gttaacacaa caattaattc cagaatccac aaatttcttt atcgtttcaa aaactcttct
     5221 tgttggaggc gttcctggtt ctatgattcg ttttatgttt tcatcgatgg ttgttattga
     5281 ccaaactata aagcaattag aattataatt gcgaaatagg ttcagatcac gttcaataag
     5341 acatgatttg gtaaaaacat aaaatggaat ctgaaactgt tgcaacacat taatacattt
     5401 ttttgtaatg ccatactttg cttctgcaaa ctgataggca tcagttgcgg aggatatcat
     5461 aactggtaac attgaaatat tcttccactt gttcaattcc gattctaaaa tttctggggc
     5521 gtttatttta ccatagatct tgtcataaaa atctggcgac catttataag ttgcataaca
     5581 atagccacat ctgtgatgac agccttgata tgggtttatg gtcattccaa catgcgatcc
     5641 taccttaaaa tatcgcagaa ttgattttga atattttctt tcaatcgagg gtgccttatt
     5701 agaataccac aacaatacta tgaatgcagg agtcttaatt agaattgaat aactgttaga
     5761 taagggggag ggtatactat cttagtttct atgtttcatc caatcttcta actatagtgt
     5821 tatctgctct attgatgatt gtttgaatga aattgaaaac tggttttact tctgagagcg
     5881 gaccgcttat ttcaaacctt atgccacctt ggattctaat ttttgaagtc ttgaaaaaga
     5941 tgccttcttc attgtattct atgccataaa tactttctaa cctctcgctt atcacatcag
     6001 gtgatttaaa aagacgtcct ctttcggaat atagtagtac cctgaaattg gtaataatga
     6061 tattgtactt tttctccgta cactttaatt ttgtctttgt cctgaacatt atgttctctt
     6121 gggggagtaa tatttcttta agtgccaagg acgcatagta catagcaatg ggttatattc
     6181 ataaaagttg aatgatttta tttattatac taacaaatgt aaatgatctt gaattctggt
     6241 agaatgtttc ataacataca tcaatttgat taaatctcaa tctcatggtg cagatcccca
     6301 tttaacttga caacgcgtaa aaatgaatat tgaatttcta gtgttcatct tttctgcacg
     6361 atgatgatgg aaggatacta ttgattcatc ctgaaataag gttctagaaa tctttcaaat
     6421 ccacaatatg taaagacact tgaataaaat agacgtttcc tcgcgcctct aattcctaaa
     6481 atgttaaatc aaagcgcgtt tgatttttct gttagttctc gactaatatt gagatctttg
     6541 attttcatgg cccatttttt aatgatatta tcttcaatca atcatcaata acttgctttg
     6601 gtagattcaa atgtacaaag gctgtatggt tgagaataac aggtctttgc agttaaaatc
     6661 aggcgagcag ttgaagtctt tttattcatc ccaaatcgat atttttccat caacatttaa
     6721 atctcaacct tcgttatctt ttgtatatgg agggtatcca taatgcaatc ttgcagatgc
     6781 cagttggata tgaagttttg ataattattg ttatcatagt ggtattgttt ttcggtgtca
     6841 agaagattcc tgaactagca cggtcattcg gaaaggcaac tgctgagtat gaaaaagcaa
     6901 ggattgaagc caaaaaggag ctcgcacaga ttaaaggcag cgacaagata ggtcgtgaga
     6961 aacttgaaga aatagccgaa acattgggta tagactatac taacaagaat gatgatgagc
     7021 taagaaaggc cattgaaggg gctgtaaata aagagaaaaa tagctagtca ctaaacacgt
     7081 cgaatagtaa tcaactgaaa cttttaaatt attttgtgtg gaaaatttta tttatagcag
     7141 atttcctctg catgggtaaa catgataggt gctgacataa tatcaaagat aatagaaaat
     7201 tatgatgtaa agaatatcca cttggcagta attggtagtc attctgcgtt agaaataatg
     7261 gatggagcaa aagacgaggg gttaaagact gtgtgcatct gtcaaaaagg aagagaatta
     7321 ccatatttga gatttaagcg attggtggac gaaataattt tggtagataa attctccgat
     7381 ctgcttttca aagaaaatca ggacaagctt agaggaatta gcggcgtagt tgtaccccat
     7441 agggcattca ctgcatattt gggatacgat tcaatagaga atgaattaaa gttgccaata
     7501 cttgggaata gaaacctttt tcgtgcagag gaaaggaatg ctaacagaaa tcagtattat
     7561 ttgttggagc gcgcagagat aaaccatcca aagatttaca acaaatattc cgacatagac
     7621 ggactagcca ttgtgaaaat tcaagaatct aaaaggaagc ttgaaagagc ttttttcata
     7681 gtaagctcag ctcaggatta cctcgataaa tcgcaaaata agataaaaga aaaaatgatc
     7741 acaaaggaag atttggattc ttctgtaata gaacaattta ttgtgggaac ttattttaac
     7801 tttaatttct tcacatcgcc tctgacaact gaaactgaat tcttggggat tgaaagaaga
     7861 cttcagacca atctcaatga tctaaatggg ctacccgcaa gagaacaatt ggagtttgaa
     7921 acagaggtaa gacatataga aataggacat acccctgcaa gcattagaga atccatgctt
     7981 cagaaagtat ttgaactcgg tgataaattt gctaacgcag tgcgaaaaga atatccacca
     8041 ggtctaattg gaccattttc tctacagagc attgtcacgc ctgatttggg aatagtagtt
     8101 tatgatgtgt ctcttagagt tcctgggaat cccataatgg caacgacctc tccatataca
     8161 aaatactcat acggtcatac atttggtatt ggacgcagga ttgcaatgga agtcaacaag
     8221 gcaattgcat caaacaaact gtctgcaata gctacttgat ttagattgac tattgctcga
     8281 tcgtttcctc aaatagattt ttccttacct ttataggaac atcaaaaaat gcggctaagg
     8341 ctatagaatc agaagcgcga taattcctta aagtaattat ttcctttcga gttttgaaat
     8401 aaagattgga tctcaataca ggaccgtttc tatatattct tacttctact aagagtaaat
     8461 cctgtagcgc cgagatttct tcaattagat tataaattgt aggtatggtg ctcttatcac
     8521 cttctctaaa tctaaggata tgtcttgcga cttctccaga aaatgcacgt atcggaaatt
     8581 ctctaccatc atcggatttt aaagtaagca agccttctag accaagttta tcaacgaaac
     8641 caacaaagct tatggaagct gttacaaatc cttcacttgt gaaagtttcg tccatatttt
     8701 ttttaaaaca tcgataaatt tagcctttat ccagttgacg acagacatat ctgaattagc
     8761 ttaatataga ttggattgtt ttccataaat aaactaactt ttggttgttt gcaatgttgg
     8821 aaaatcatga ttcgctcaaa aataggggca tacgcattat ttgcatcggt atcttctcaa
     8881 taattttctc tctgtccgtt tattcattat taagttctaa tcaatctgtc tcagacactc
     8941 caaagttgta taacttggct tctgcggtca tcacactagt tatgatttca ttagttgcga
     9001 ttggttacgg atcttatctt gtcatccgat ctgaagcgtc aagacctgag cctaaaaaaa
     9061 attatctcgg atacatttct aggatcttga ctcaaaagac ctattggaga atatttgttg
     9121 tttcatgtat tgtatatggc atcttctttg gattcttatc tcaaatcctg atctatcata
     9181 ctgatgtcga agatgatacc gcgccttctc tgtatctgac attatgttgt aactaccccg
     9241 gatatgtgcc aatgctcact gttgagctaa ctgaactatt ttcaatctta ataattccga
     9301 taaaccttat acttgcaata gtagtttcga tcctggttgg ttttaatttt gcactaaatt
     9361 tgcatttctt gaggatgttt agaaatcagt ctcaaaggag gtttccaatt gcttctacgt
     9421 ttggagtttt cactggactg ttcatcggtt gtcctacctg tgcaggcagc ctatttacca
     9481 tgttcgtggg atttggtacc agcactctag tgtcagcttt ggctcctctt caaagcatgt
     9541 ttattgcaat aagcattcca attctagttg taataccgct actttt
//
LOCUS       DASPFX010000075         3516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_731831, whole genome shotgun sequence.
ACCESSION   DASPFX010000075 DASPFX010000000
VERSION     DASPFX010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3516
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_731831"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            403..795
                     /locus_tag="VD694_01720"
     CDS             403..795
                     /locus_tag="VD694_01720"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HXW11448.1"
                     /translation="MSNTQNKTIARRFVEEVINSRKTDMAKNFVTPDIIYHGTAEEVR
                     GLEEFKKWVAEDLSAFPDMKVTILDDIGEENKIAIRWVLKATHEKDFANFPATHKKFE
                     TQGAEIFHFEGDKIKEAWTVCDMAVLAQ"
     gene            complement(1274..1639)
                     /locus_tag="VD694_01725"
     CDS             complement(1274..1639)
                     /locus_tag="VD694_01725"
                     /inference="COORDINATES: protein motif:HMM:NF021378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HXW11449.1"
                     /translation="MDPTGIQESILTWFIILKIMRGRWASAAIGAGIARRRAGAEMDE
                     QARGYENQQRQAQQQIEAQQRQIEALQQQKQQPQAQQPQQQHEDPTQKLKKYADLKQQ
                     GIITEEEFRKLKADLLSKI"
     gene            complement(1788..3143)
                     /locus_tag="VD694_01730"
     CDS             complement(1788..3143)
                     /locus_tag="VD694_01730"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HXW11450.1"
                     /translation="MLPDRNEKNAAPDIGAQIDTLGRFPVRKSIMIAISLGSFFALYD
                     ITNFQYISPILSSVWDLTDAQIAHAISMRVLGQVVGAFCISIIADWKGRRPALMITLI
                     ILAVGSILVSISTNIFQVSVFRLLTGIGIGAEIVIATAYIGEISPRSMRGRYISIIFL
                     IGTVGLSSSGPISLFLIQEDKIMGIDSWRILMAIPAAVAILLLPLRYSLWESPRWLLS
                     RGRISETNFLLAKLGLQPIRDKKVDSAAATTRRNTLHPFNNRKVFSRMLLFVCVWFLI
                     LVPTAASSLLVVEYVNQGYTTIQSVAITTIGSVGYVLGACLSIVIADKFERKYQFTIA
                     GVVMAITFIVRGLLVHDYIALAAASFIGFAANSWLTACLFTYTAENFPTRIRSIASGG
                     IEGLGSGLSTLGPVIFILLQPFGFLNIMVGLASFLLVAAITIVFFGRRSVGISLEQLN
                     N"
BASE COUNT         1062 a          676 c          654 g         1124 t
ORIGIN      
        1 atgagaggtt cggactggct cataatagga ggagtcttag gattgatagt agccatagct
       61 ggaggaatcc tggtatggcg tgcattcttt ggatgacata aatatcgcta gatatattcg
      121 agttaaattg aggaagtttc gtcttggttt attgatttat tatttgtgca ccccccctat
      181 tgcgaagtgt aaccgggtga gtatttatcc gtgcatgatc ttaattgctt aactaaattt
      241 tatacactac aatggctttt tatggtctca atagggagta gaacttatcc tctcttttgt
      301 tctccagata taatcatgct acctaactct tccaccagat atgaccaaaa ttttggaaaa
      361 taaatagtaa agcttaatgg ccacctatga tcggtataag gcatgtcgaa tacacaaaac
      421 aagacaatcg ctcgaaggtt tgttgaagaa gtgattaata gccggaaaac agatatggca
      481 aagaactttg ttacgcctga tataatttac catgggacgg ctgaagaggt cagaggactg
      541 gaggaattca aaaaatgggt ggccgaagat ctatccgcat ttcctgatat gaaggtcaca
      601 attttagatg atattggaga agaaaacaaa attgccatta ggtgggtgtt aaaagcaaca
      661 catgaaaaag actttgctaa ctttcctgcc actcataaga agtttgaaac acaaggagcc
      721 gaaatctttc attttgaggg agacaaaatc aaggaagcat ggactgtatg tgacatggct
      781 gtattggcac agtaacttaa ttatttgaag ttactaaact tctatttata ctgggttgac
      841 atttcaaaat cagctcatct aatatcacta caatttcgct acgggcactt tggagtaaca
      901 atccctatcc atttcgtcta gattatttat atcccgtatg gaatggtggt ggctattctc
      961 gatcttatct ttgttgaaca tgtcctccta tagaaccggc caaagtgttt aatgattatt
     1021 atccatgtat tgaaagcttg ggtttaatgt aatctttgct atgttcacaa aggggccact
     1081 tttagttttt atgcgtaaca gcggaactag gtctaataat aagaaaagat agaactatca
     1141 aaaatcagca gggcgtaatt aattcttaaa ctggatctaa aatattttat tgttaaatga
     1201 tttaattcca tagcttagcg gatattacaa aatcacaatt aaagattaac cgtcgtctat
     1261 tgcagctcgt agtttaaatc tttgataaca agtcagcctt gagtttccga aactcttctt
     1321 ctgttattat tccttgttgt ttgagatcag catatttttt caacttctga gtggggtctt
     1381 cgtgttgttg ctggggttgc tgtgcctggg gctgttgttt ttgttgttgt agtgcttcaa
     1441 tttgtctttg ctgtgcttca atttgttgct gtgcttgtcg ttgttgattt tcgtatcctc
     1501 tggcttgttc gtccatctct gctccagcac gccttctggc tatacctgct cctatggctg
     1561 ctgatgccca tcttcctctc ataatcttca ggataatgaa ccaagttaat atactttctt
     1621 gaattccagt aggatccatt tatttcaata aatggctgca attacttact agcaatacaa
     1681 aaaatcttta ttgatggtaa ctcgtgtcta atacaaacta ttaattaaga taataggaag
     1741 ccaatattgc cttctattat taaattacct atctgttaca ttatctttca gttatttagt
     1801 tgttctaacg agatacctac actacgcctc ccaaagaaaa caatcgtaat cgccgcaaca
     1861 agcaagaaag aggctagacc aaccattatg ttgagaaagc caaaaggctg aagtagaata
     1921 aaaattactg gacctaaagt ggataatcca ctacccaatc cttctattcc tcctgaagct
     1981 atcgatcgta tacgagtggg aaaattttct gcagtatatg tgaagagaca agcagtaagc
     2041 catgaattgg ctgcaaaacc aatgaaacta gccgcagcaa gagcgatata gtcatgaact
     2101 agcagaccac gtacaatgaa tgtaatggcc ataactacac cagctatcgt aaactgatac
     2161 tttctttcga atttatctgc aatcacaata gacaagcatg cacctaacac gtatcccaca
     2221 ctccctatcg tagttattgc aaccgattga atagttgtat agccttggtt tacatattcc
     2281 actactagta gtgaagaggc cgcagtaggg actagaatca aaaaccaaac gcatacgaat
     2341 aacaacattc tagagaatac cttcctgtta ttgaatgggt gtagcgtatt tcttcgtgtt
     2401 gtagctgctg ctgaatcaac tttcttatct cgaatcggct gtaatcccag tttcgcaagt
     2461 agaaaatttg tttcactaat tctacccctt gataaaagcc aacgtggtga ttcccatagg
     2521 ctgtatctaa gtggcaataa tagtatggcc actgctgcag ggattgccat caaaatcctc
     2581 caactatcaa ttcccattat cttatcttct tgtatcaaaa ataaggagat tggtcctgaa
     2641 gaggacagtc ctactgttcc tattaaaaat ataattgaaa tatatctacc gcgcatcgat
     2701 ctaggagata tttctccaat ataggctgtt gcaattacta tttcagctcc gataccgatt
     2761 ccggttaata gcctgaaaac tgatacctga aagatgtttg tggatatcga cacgaggatt
     2821 gagcctacag ccaaaattat aagagtaatc attagtgcag gtctccttcc tttccagtct
     2881 gcaattatgg aaatgcaaaa cgctcctacc acttgtccca ataccctcat tgaaatcgca
     2941 tgagcaattt gtgcatcggt aagatcccat acggagctca gtattgggga aatgtactgg
     3001 aaatttgtaa tgtcatataa tgcaaaaaaa cttccaagac ttattgctat catgatactt
     3061 ttcctgacag gaaacctgcc taaagtgtct atttgggcac ctatatcagg agctgcattt
     3121 ttttcatttc tgtctggaag caaattcatt gaccaaaagt tatgtgcttt tctttcacaa
     3181 gagctctcat cataatgtgc atagttactt caattaaatt acttggatgt tcttattgac
     3241 cagtgttagt cttgtggtcc tatgttcata attaacctca tttaaattaa tcggcatata
     3301 actaaatttg aaaaattaga ttcagacatg gatgcagact aatcatcatt atactgcccg
     3361 cttacttatt caggccaaat aacatctccg tatgttcttt aactttgtat gacggttcac
     3421 aagttgtcgc gactattgaa caattatcgg gcattttgct cacggagcaa ataccagcca
     3481 tattgtatca gatgttgatt taacgtctac atgttt
//
LOCUS       DASPFX010000076         3774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1258896, whole genome shotgun sequence.
ACCESSION   DASPFX010000076 DASPFX010000000
VERSION     DASPFX010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1258896"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2482)
                     /locus_tag="VD694_01735"
     CDS             complement(<1..2482)
                     /locus_tag="VD694_01735"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003682 - chromatin binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007076 - mitotic chromosome condensation
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation SMC family protein"
                     /protein_id="HXW11451.1"
                     /translation="MVYIKKLEIYGFKSFGFKNTVLHLNNGLVAVTGPNGSGKSNILD
                     AIMFALGENSPKLLRVDKFQSLFHDSGNSPHRLVRVNLTFDNSDRGIPIDMDSVSMSR
                     EMEGQTGESQYYLNGKKVSKNTIMELLEIIVAVPNKLNIVQQGMITRISELNSEERRK
                     IIEDIVGLSYFDDKKNESIKQLDESDRRLEVALARMDEIKKRINELEAERNDQLRYTF
                     IESQLKKFKAIKYSNKIRYLKGEIDNRTTLLSTNENNLDILAKNRNELRDQINKLDQE
                     KTSFMNQVDASNKSRAQIDTKLSDVIYNIERDKAIIKEARIRLKFIEDRFAFIESEGK
                     KIESEFGNSTQTLQKKKILSQEKQSHLAQLKEELQGLNSRIDEISDSVDKNRKWKEMF
                     LHKKSTLVEIGSRLNILIARLEERKKFILNKIEENISSIESMNRTLGEKESQLRILNS
                     DMCYSALDTERKLLDGLKQKSQSYLDEIGIYENTVSKVKKFAVPYEEKYAMAVDLSNE
                     DFAIADLSRNSQDFKIIGMVRDLLKYDDVYEKAVFAVAKDWMKCCIVPTVEEMIRLAT
                     YIKEKNLPRFRIISSELLNSVSRESIELKGYDYIGNLADLVNSSVPNLVDFIVGNVYV
                     VRNSKTAYQLSKQGYKCVTVAGELFEPNANSLSLDFGSKISDLTREIILNESIGSLLK
                     NSKILSSYLENMKAELKKINNEISNKEMHIVELEKLVAENSINSNHLREVNSSLGPEI
                     EKIRSINRSLSTEINEIESELVRSKKRDSVISSSIAKYMTRLQSVIDEKMDNELSELT
                     DKKSQVLRKIENSEIEHREIITSIKSLEN"
     gene            complement(2591..3709)
                     /locus_tag="VD694_01740"
     CDS             complement(2591..3709)
                     /locus_tag="VD694_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HXW11452.1"
                     /translation="MSGNTNNVNKKVKVAIAGVGNCASALLQGISFYGNSNSKGNEGE
                     NVQEIPEGLIAYTLGNIKPNDIEFVAAFDVVESKVGHDLADAIFASPNNTIKISDVPS
                     TGVKVHKAKVLDGVGKRLNERVKISDSSPVDVSKILKETGAEILVNYLPVGSREATQY
                     YVEQCLDAGVSFINAIPVFIASTPKWQQAFANKNLLCAGDDVMSQLGATVLHKTLVKL
                     FVDRGVKVDETYQLNVGGDMDFYNMLDEERLEDKRISKTSAVAAMAPYEIPMRIGPSD
                     FVGFLANDKVCYISMRGRYFGKVPVEVDVKLKVVDAYNSAGVMIDAIRGTKIAIDRGI
                     TGQLDSVSAYCFKHPPIQRPYVEAKNSFMEFVEGKRER"
BASE COUNT         1036 a          759 c          586 g         1393 t
ORIGIN      
        1 cattttcaag tgactttatt gaggtgataa tttctctatg ttctatttcg ctattctcga
       61 tttttcttag aacttgggac tttttatctg ttagttctga tagttcatta tccatctttt
      121 catcaatcac tgattgaagt ctcgtcatgt attttgcaat cgaggaagat atgactgaat
      181 ctcttttttt gcttctgacc agttctgatt caatttcatt aatttctgtt gaaagagatc
      241 tattaattga tcttattttt tcaatttcag gtcctaaact agaattaacc tcgcgcaaat
      301 gattggaatt tatactattt tctgcaacaa gtttttctaa ttctacgatg tgcatttctt
      361 tgtttgaaat ttcgttgtta atcttcttca attctgcttt catattttcc aaatatgatg
      421 acaaaatttt agaatttttt agtagtgatc caattgattc atttaatatt atttctcttg
      481 tgagatctga tatcttggag ccaaaatcca atgaaaggga atttgcattt ggttcaaaca
      541 gctcaccagc aacagtaacg cacttgtacc cttgtttcga tagttgatat gcagttttcg
      601 aattccttac tacatatacg ttaccgacaa tgaaatccac caaatttgga acactcgaat
      661 ttaccaaatc tgcaagattt ccaatatagt catatccttt caattctatt gattccctac
      721 ttactgaatt aagtagctct gatgagataa ttctaaatct aggaagattc ttttccttga
      781 tataggtagc aagacgaatc atttcctcta cagtgggaac gatacaacat ttcatccaat
      841 cctttgcaac cgcaaaaact gccttttcat aaacatcatc atatttcaat agatctctta
      901 ccatgcctat tatcttgaaa tcctgtgagt ttctgctaag gtctgctatt gcaaagtcct
      961 cattagataa atcaacagcc atcgcatatt tttcctcata tggaactgca aattttttca
     1021 ccttgctaac ggtattctca tatatgccaa tttcatctaa gtatgattgg cttttttgct
     1081 ttaaaccatc aagtagtttt cgttctgtat ctaacgcaga gtaacacata tctgaattca
     1141 gaattcttaa ttgtgattcc ttttcaccaa gtgttctatt catgctctca atcgatgaga
     1201 tattctcttc tatcttgttg agaatgaatt tctttcgttc ttccaatctt gcaataagaa
     1261 tattgagtcg ggatccaatt tcgactaacg ttgatttctt gtgtaaaaac atctccttcc
     1321 attttctatt tttatctaca ctgtctgata tctcatcgat tcgggagttg agtccctgca
     1381 gttcttcttt caactgagca aggtgtgact gcttctcttg gctcagaatt ttcttttttt
     1441 gcaacgtctg agtggagttt ccaaattcag attcaatttt tttgccttct gattctataa
     1501 acgcaaaacg atcttcaata aattttagac ggattcgcgc ttctttaatt attgctttat
     1561 ccctttcaat attgtaaatg acatccgata atttggtatc aatttgggct ctggacttgt
     1621 ttgacgcatc aacttgattc ataaagcttg ttttttcctg atcaagtttg ttaatttggt
     1681 ctcttagctc gttacggttt ttggccagaa tatcaaggtt attttcgttt gtagataata
     1741 gcgtggtgcg attgtcgatt tcgcctttca aatacctaat cttatttgaa tatttgattg
     1801 ccttgaattt ctttaattga gattcaatga atgtatatct taattgatca tttctttcag
     1861 cttctagttc atttatcctc ttcttaattt catccattct ggcaagcgct acttcgagtc
     1921 tcctgtcaga ttcatcaagt tgttttatag attcgttttt cttgtcatca aaatatgata
     1981 gtccaacaat gtcctcgata attttccttc tttcctcgga atttaattca gaaattctag
     2041 taatcattcc ttgctggact atattgagtt tatttggaac tgctacaata atttccaata
     2101 attccataat ggtattcttt gaaacctttt tgccattaag ataatattga ctctcgccgg
     2161 tttggccttc catttctcga ctcatagaaa ctgaatccat atcaatgggt atgcccctgt
     2221 cggaattgtc aaaggttaaa tttactcgaa ctagtctatg cggagaattc ccactgtcgt
     2281 ggaaaagtga ttgaaactta tcaactcgca ataatttggg gctattttct cccaaagcaa
     2341 acatgattgc atcaaggatg ttgctcttcc ctgagccgtt aggacccgtt acagcaacaa
     2401 gaccattgtt taaatgcagt acagtatttt tgaatccaaa tgacttgaaa ccatatattt
     2461 caagtttctt tatatagacc aaataccttg agatcagatt ctcatgcttg taaatatatt
     2521 ctatttgaca aaataattag atctagattg atactttttt agacaataaa gggatggttc
     2581 atggaccaat ttagcgttct ctttttccct caacaaattc cataaatgaa ttctttgcct
     2641 caacataagg tcgttgaatt ggaggatgtt taaaacaata tgctgataca ctatccagtt
     2701 gaccggtgat tcctctatcg atagctatct tagtacctct aattgcatca atcattacac
     2761 ctgcactatt ataggcgtca acaaccttga gtttgacgtc tacttctacc ggaaccttgc
     2821 caaaatatct gccacgcatg gagatgtagc atactttgtc gtttgcaagg aatcccacaa
     2881 agtctgatgg acctattcgc atggggattt catacggagc catagctgcc actgcactcg
     2941 tcttactgat tctcttgtct tcgagacgtt cttcatcaag catgttatag aaatccatat
     3001 ctccaccaac atttagttgg taagtctcgt caacctttac acccctatcc acaaagagct
     3061 ttacaagtgt cttgtgcaat actgtagcgc ctaattgact cattacatca tcgcctgcgc
     3121 agaggagatt cttgttagcg aaagcttgct gccattttgg ggtcgatgca ataaaaaccg
     3181 gtattgcatt gataaaagac acaccggcgt cgagacattg ctctacataa tattgagttg
     3241 cttctctgct tccaacagga agataattca ctaatatttc ggctccagtc tccttaagta
     3301 tttttgagac gtcgacagga gaactatctg atatcttgac tcgctcattc agacgtttac
     3361 caactccatc aagtaccttt gccttatgta ctttaacccc cgtcgagggc acatcagata
     3421 tttttatagt gttattggga cttgcaaaaa ttgcatcggc aagatcatga ccgacttttg
     3481 attctactac gtcaaatgcc gctacgaatt cgatatcatt tggtttaatg ttaccgaggg
     3541 tatatgcaat taaaccttca ggtatttcct gaacattttc accctcatta ccttttgagt
     3601 tactattacc ataaaatgaa ataccttgca ataatgcaga agcacagttt ccaacaccgg
     3661 ctattgcaac tttcactttc ttatttacat tattagtatt accgctcatg attgcttgat
     3721 ttaccgtatt tatttaatca atatatgtgt attcagtatt ttgtaatatg taat
//
LOCUS       DASPFX010000077         3514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1900851, whole genome shotgun sequence.
ACCESSION   DASPFX010000077 DASPFX010000000
VERSION     DASPFX010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1900851"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VD694_01745"
     CDS             complement(<1..494)
                     /locus_tag="VD694_01745"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF014749.4"
                     /note="catalyzes the formation of L-citrulline from
                     carbamoyl phosphate and L-ornithine in arginine
                     biosynthesis and degradation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HXW11453.1"
                     /translation="MISLSKNYLTSISDLTDKEILGIIKHAIESKGQSNIKEQPLKGK
                     TLALMFEKPSTRTRLSFETAMFQLGGNTIYLNSNDLQLSRGESIEDTAKTISLYVDCL
                     VARVYSHDTILQLVQNCKIPVINGLSDQYHPCQILADLMTILEHKKSFDALSLAWVGD
                     GNNV"
     gene            complement(478..1956)
                     /gene="ftsY"
                     /locus_tag="VD694_01750"
     CDS             complement(478..1956)
                     /gene="ftsY"
                     /locus_tag="VD694_01750"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HXW11454.1"
                     /translation="MFEKLRKIFSETTKSLGQKSISKKDIDSILDELQISLMENDVAH
                     EIVDEMTTKIKEEIQNLKLERNENSDQVIITKLYSFLHQLFLSTNAKTDIIQSILDKK
                     KSKAGPYSIIFLGINGTGKTTTVAKFCKLLRDKGISVVMAAADTHRAGAIEQITQHGN
                     NLNVKVISQRYGADPSAVARDALEHAKKNYIEAVLVDTAGRMQTSKNLMEEVSKLIRV
                     IKPDMKIFVGDSLAGNDTVNQAREFFEYTKYDGSILTKSDADSKGGAAISIAYLTHKP
                     ILYLGMGQGYGDLEEFDHDRFLDSIFKDRVYDKTEKIQTPGDMLNVDNVWKGEPTSDT
                     PNLTHQLDTHQLDAYKIELPSDTNKIVEKMDEEKKLSAPQTIQVESAHSDDDEKLSDG
                     RKNVAEEKMESKMESVAQTTESKPKGGSFFKKIFKDNKEEKKADESKDNRNDNTETKQ
                     ETNKKDTKNKVKVTSKSDSETQNEPDDDLVYLTDDDINDLIK"
     gene            complement(1979..2434)
                     /gene="pfdA"
                     /locus_tag="VD694_01755"
     CDS             complement(1979..2434)
                     /gene="pfdA"
                     /locus_tag="VD694_01755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit alpha"
                     /protein_id="HXW11455.1"
                     /translation="MTSRENSNNQISSEQKISEMLQQSKILEAYMNDILTKEATVTRL
                     ITEAHLASEAIQGLSSTDKQESLIPIGIGVFLKVTVPQVTNLLVSVGSGVTIEKSKEN
                     AKNYVESRIKEFELALQQIQSQKEQIAMRMNQLQNEVNVEMQKAQRPPN"
     gene            complement(2529..3068)
                     /locus_tag="VD694_01760"
     CDS             complement(2529..3068)
                     /locus_tag="VD694_01760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11456.1"
                     /translation="MYYSTEKRTSERTVYLIVFYISATMMTAITFYALYLSVVEYAMT
                     GKIVIGEILVKTEFPFKGFSKLVTYLMIVSVISWYCVTKLGGEKVKEVSPALRSILQL
                     IVLALAIVALYEFVYNFVVWSSLITLNALGGSINLDNISIPYPNPETPWNLVFATKMS
                     LAAFLIAAHGFYIISRKSK"
     gene            3244..>3514
                     /locus_tag="VD694_01765"
     CDS             3244..>3514
                     /locus_tag="VD694_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11457.1"
                     /translation="MRVIVCSHEADIDGIYSASVALIKYPEARVSFYNYGLENFRKMF
                     DYVKNESKKSKKGLAVISDLGINDQQVSALALDFVIYLKQRQWSVI"
BASE COUNT          991 a          665 c          601 g         1257 t
ORIGIN      
        1 cagacattat tgccatcgcc cacccacgcc agcgataagg catcaaaact ctttttgtgc
       61 tctaaaatag tcatgaggtc agccaaaatt tggcatggat gatactgatc agagaggcca
      121 tttattacag gtattttgca attttgtacc aattgtagta ttgtgtcatg cgaatatact
      181 cttgcaacta gacaatctac atataatgaa atggtttttg cggtatcttc aatagattca
      241 cctcttgaaa gctgaagatc attggaattt agatagatag tgttaccacc caactgaaac
      301 atagcggttt caaagcttag tcgtgttcta gttgaaggtt tttcaaacat taatgcaaga
      361 gttttccctt tcaagggttg ttccttaatg ttactctgtc ctttagactc aattgcatgt
      421 ttaattatac ccaaaatttc cttatcagtc aaatcagaaa tactggtaag ataattttta
      481 cttaatgaga tcatttatat catcatcggt caaatagact aagtcatcat cgggttcatt
      541 ctgagtttca gagtcagatt tactcgtaac cttaacttta tttttagtat ctttcttatt
      601 tgtctcttgt ttagtttcag tattatcatt tctattatct ttactctcat cagccttctt
      661 ctcctcctta ttatctttaa agatcttttt gaaaaatgat ccaccttttg gttttgattc
      721 agttgtctgc gctactgatt ccatctttga ttccattttt tcttctgcaa cattttttcg
      781 accatcgctt aatttctcat catcatcact atgtgctgac tcgacttgta ttgtttgggg
      841 cgccgataat tttttctctt catccatctt ctcaactatt ttgttggtgt cagatggcaa
      901 ttcaatcttg taagcatcta attgatgggt atctaattgg tgagtcaaat ttggagtatc
      961 agatgtaggt tcacccttcc agacattgtc aacgttcaac atatctccgg gcgtctgaat
     1021 tttttctgtc ttgtcatata ccctatcctt aaaaatagaa tcaagaaatc tgtcgtgatc
     1081 aaattcttcc aaatctccat agccttgccc cattccgaga tacaaaatag gtttatgcgt
     1141 caaataagca attgatatgg ccgcacctcc tttagaatca gcatcacttt ttgttagaat
     1201 tgaaccgtca tacttggtat actcaaaaaa ttctcgcgcc tggttaacag tatcgtttcc
     1261 tgccaaagaa tcaccaacaa atattttcat atcgggtttt ataactctga ttaatttact
     1321 aacttcctcc attagatttt ttgaagtctg cattctgccg gcagtgtcaa ctaatactgc
     1381 ctcaatgtaa ttcttttttg catgttctag agcatctctt gcaactgccg atggatcggc
     1441 accatatctc tgcgagatta ccttaacatt tagattgtta ccatgctgag taatctgttc
     1501 tatggcacct gctctatgtg tgtctgcggc ggccatcaca actgaaattc ccttgtctct
     1561 taataattta caaaattttg ctaccgtggt agtttttcca gtaccgttaa taccaagaaa
     1621 gataatagaa tatggacctg cttttgattt tttcttatcc aaaatagact gaataatatc
     1681 agtttttgcg ttagttgata gaaataactg atgtaggaat gaatatagct tggtgatgat
     1741 aacctgatca gaattttcgt tcctttcaag cttcaagttc tgtatttctt cctttatttt
     1801 tgtagtcatc tcatctacta tttcatgagc tacatcattt tccatcaaac tgatctgcaa
     1861 ttcatcgaga atcgagtcta tatccttttt agaaattgat ttttgaccga gactctttgt
     1921 tgtttcagaa aatatttttc ttaatttttc aaacaaacga agcgtaatct acctcttatt
     1981 agttcggggg tctttgagct ttttgcattt caacatttac ttcattttgg agttgattca
     2041 ttcgcatcgc aatctgctct ttttgtgatt gtatttgttg tagtgcaagt tcaaattcct
     2101 tgattcttga ttccacataa ttttttgcat tttcctttga cttttcaata gtaacgcctg
     2161 aacccacact aacaagtaga ttagttactt ggggtactgt aaccttaaga aatacaccaa
     2221 tccctattgg gataagagat tcctgtttat cagtagaaga caatccttgt atggcctctg
     2281 aagccagatg ggcctctgtt atgagtctgg ttactgtagc ttcttttgtc aatatgtcat
     2341 tcatgtatgc ttcaaggatt tttgattgct gaagcatctc actgattttt tgttcagatg
     2401 atatttggtt attagaattt tctctggagg tcatcttaat atattttctg agtaaaaaac
     2461 gggcatataa ctttgcctaa caagtttagg tgtcaaggat ttgcatgttc taaaacagaa
     2521 tcgggctatt acttggactt ccttgaaata atatagaatc catgagcagc tatcaaaaag
     2581 gcagccaagg acatctttgt tgcaaagact aggttccatg gagtttcagg gtttggataa
     2641 ggtatgctga tgttatccag attaatgctc ccgcctagtg cgttgagtgt tattaacgaa
     2701 ctccatacaa caaaattgta gacaaactca taaagcgcaa ctattgcgag tgccagcact
     2761 attagttgaa gtattgagcg tagggcaggc gaaacttcct ttactttctc gccacctaat
     2821 ttggtaacac aataccaaga gattactgaa acaatcatca gataggtaac tagtttggaa
     2881 aatcctttaa atggaaattc tgtttttact aaaatctcac ctatcacaat tttaccagtc
     2941 atagcatatt caactacgct tagataaagg gcgtaaaacg taattgcagt catcatggtt
     3001 gcagaaatgt agaaaactat caggtatacc gtcctttccg atgtcctttt ttctgttgaa
     3061 tagtacattg ggaattgtaa tagttgtcaa aggctatcaa atataaaatt attcttgtaa
     3121 ttgacttggt agtttgatct agattatcaa tttctcgagc aaatcagtga acgcaaaata
     3181 tgcattggat atgcgctaga aaggcactag atacatattc agtttggttg cctaaagcac
     3241 taaatgcgcg taatagtatg ctcacatgaa gcagatattg atggtatcta ttctgcctcg
     3301 gttgcattga taaagtatcc agaggccaga gtttcattct ataactacgg cctggagaat
     3361 tttagaaaaa tgtttgatta tgtcaaaaac gaatccaaaa agtcaaaaaa aggccttgct
     3421 gtgatttccg atcttggcat aaatgatcaa caggtgtctg ccctggccct tgattttgtt
     3481 atctatttga aacaaagaca gtggtctgtt attt
//
LOCUS       DASPFX010000078         2691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1187997, whole genome shotgun sequence.
ACCESSION   DASPFX010000078 DASPFX010000000
VERSION     DASPFX010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1187997"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..777
                     /locus_tag="VD694_01770"
     CDS             181..777
                     /locus_tag="VD694_01770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11458.1"
                     /translation="MGSFKPDEGAKSRKTKSITFRLDSMVIEELQRDANEGEISLNVL
                     VNQVLKRHVEWDRYENKLGMIPIPKLMLATLIDEAMQLAADAKISDLESYRAKIVNNA
                     AETALKVMKDSVLFMKKEYSFWTVLDVLRQYMKVAGIISDHRIEMGRKHVFIIQHDLG
                     ENWSLFAKELLSKIFIELARVRAEISTTPKTVRAEIHL"
     gene            881..1273
                     /locus_tag="VD694_01775"
     CDS             881..1273
                     /locus_tag="VD694_01775"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HXW11459.1"
                     /translation="MIDNNFQQNGSDNEIIVKEYFSRIRSRDIDGLLELFSDDAVIHE
                     PFSRARRLFGKTEIKPFLKSVIMANEGLQYEINIERQKANPVDNFVAFVIFRKGNTIN
                     SRFTFSFDDPDRTSTNGKIKSLLIEFLD"
     gene            1498..2016
                     /locus_tag="VD694_01780"
     CDS             1498..2016
                     /locus_tag="VD694_01780"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW11460.1"
                     /translation="MISETLSVSKLMNRKVQIDFEDQNINSVCNIMYTNDIGSVIIVT
                     RNEEKLPVGIITERDIVRILGKLDPDLLNTPIKKFMSQPLVTIEESASISEASKLMNS
                     KKIRRLVVVDKNNKMSGILTQNDIFRAIEKNPDLFSEFYGESFSSKFKEIYEKFNQYR
                     LESLMPEFNQYR"
     gene            2230..>2691
                     /locus_tag="VD694_01785"
     CDS             2230..>2691
                     /locus_tag="VD694_01785"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HXW11461.1"
                     /translation="MDKVHMTESNIARKNVLVPTTFDSIFESFRRDMEDVLSVTKWPL
                     MSARNGLVSDFDTRLPLCDMEDLGDRYEISLEAPGIPKEKITIKAGIDYIDISGEEEK
                     QAKEKGKNYLYNERSYSSLRRRISTPEEIVPSKVDAKMENGVLHVQVPKKTP"
BASE COUNT          954 a          424 c          509 g          804 t
ORIGIN      
        1 cacccttctc gattctatac gattatgaca aataatcatt tttagcttct tatttggatt
       61 attttgtttt taaggaacta aatctctctc agattcctac ctcattaagt tagatatact
      121 tgccccacaa cttataatac atattagttt cctcaccatc tttactacag ggaaatatgg
      181 ttggggtcat ttaaaccaga tgaaggtgca aaatctagaa agacaaaaag cataactttc
      241 aggttggatt caatggtcat tgaggaatta caaagagatg ccaatgaagg agagatctct
      301 ctaaacgttt tagtcaatca agttctcaaa agacatgtcg aatgggatag atacgaaaac
      361 aagttgggaa tgataccaat tccaaagtta atgttggcta ctttgataga cgaagccatg
      421 caacttgctg cggatgcaaa gattagtgat ttagaatcat acagggccaa aatcgtaaat
      481 aacgcagcag aaactgcgtt gaaagtaatg aaggattctg ttctgtttat gaaaaaagaa
      541 tatagtttct ggacagtttt agatgtacta cgacaatata tgaaagttgc agggattata
      601 tctgatcaca gaatagaaat gggtagaaaa catgtcttca tcatacagca tgatttggga
      661 gaaaactggt cgttatttgc aaaggaactt ttgtcaaaaa tatttataga actagcacgg
      721 gtcagagctg agataagcac aacaccaaaa actgttagag cggagattca tttatgattt
      781 tagataatca ttcaattatt tgcatcaagt tgtaatacag tgcattcctt ctcgttatat
      841 acaattgatt gcaaatcatg ttcaaatcaa ggtgacttaa ttgattgata acaattttca
      901 acaaaacgga agtgataatg aaattattgt aaaagaatac ttcagtagaa ttaggtccag
      961 ggacatagat ggactcttgg agcttttttc agatgatgcg gtgattcatg aacccttcag
     1021 tagagcaaga cgtctttttg gtaaaactga aatcaagcca tttttgaaaa gtgtaatcat
     1081 ggccaatgaa ggtcttcaat acgagataaa tattgaaaga caaaaggcta accccgtaga
     1141 taattttgtt gcttttgtca tatttcgtaa agggaataca ataaactcta gattcacatt
     1201 cagttttgat gatcctgata gaacaagcac gaatggaaag ataaagtcac tattgataga
     1261 attcctagat taatgaaatt ttgaaggtat tgatatttcc tagaaagaga tgattgagac
     1321 agatggtctg gagggcatta tcattgactc caaaaacatg ttaatttttg caattctatt
     1381 aaatcttcaa tacgtgttct gaatcataat atcgaattca agaaagggtt ttgtcaaatg
     1441 ctctgcatta cactgaatcc atcacaatta aatatcttaa tcctaaagta ttgtcaaatg
     1501 atctcagaaa cattatcggt ttcaaaacta atgaatcgca aagtccaaat tgattttgaa
     1561 gatcaaaata tcaatagtgt ctgcaatatt atgtatacta acgacattgg atctgtaata
     1621 attgttactc gtaatgaaga aaagcttcct gtgggtatta ttactgagcg tgatattgta
     1681 cgtattttag gtaaacttga tccagattta ctcaacaccc caatcaaaaa attcatgagc
     1741 caaccattag ttactataga agaatcagca tctattagtg aggcaagtaa gctcatgaat
     1801 agtaagaaaa ttcgtagact cgtggttgtg gacaaaaata acaaaatgag tggaatatta
     1861 actcagaacg atatattcag agcaatcgag aagaatcctg atctgttttc cgagttctat
     1921 ggcgagagtt tctcatcaaa atttaaggaa atttacgaaa aattcaatca gtataggcta
     1981 gagagcttaa tgcccgaatt caatcaatat cgataagacg aatgattctg gacattgaaa
     2041 ctgccaaaat cgttataact attttgtaag ctcctttatt agatatcatt tgctgttgaa
     2101 tgtttattcc tatcggcagc aattacatcc acaataatct agcctttggt gaacgaattt
     2161 agggtaacat tcattcttga tttaagtatt gtgtaatgca gtgcattcct agtcttaaaa
     2221 tatattacta tggataaagt gcatatgaca gagtcaaata tcgcaagaaa aaatgtcttg
     2281 gttccaacga cattcgatag catttttgag agcttcagaa gggacatgga agatgtattg
     2341 tcagtgacaa aatggccatt aatgagcgca cggaatggtc ttgtatccga tttcgatacc
     2401 cgtcttccac tatgtgatat ggaagacctg ggcgacagat atgaaatctc tttggaagct
     2461 cctggtattc caaaagaaaa gataacaatc aaagccggga ttgactatat tgatatctca
     2521 ggagaagaag aaaagcaagc aaaagaaaaa ggaaaaaatt atttgtacaa tgagcgatca
     2581 tacagttcat tgaggagacg catatcgact ccagaggaga tcgttccctc aaaagttgac
     2641 gcaaaaatgg agaatggtgt tttgcacgtg caagtcccaa agaaaacacc g
//
LOCUS       DASPFX010000079         2156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1187200, whole genome shotgun sequence.
ACCESSION   DASPFX010000079 DASPFX010000000
VERSION     DASPFX010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1187200"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..272
                     /locus_tag="VD694_01790"
     CDS             99..272
                     /locus_tag="VD694_01790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11462.1"
                     /translation="MENQTLPFLIEDFIATVKTFCLITDVIIPRKKIKRGLPHVERYA
                     DDWEPIIEETLKI"
     gene            357..677
                     /locus_tag="VD694_01795"
     CDS             357..677
                     /locus_tag="VD694_01795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11463.1"
                     /translation="MLGIKLQIFIPLIQQVPILGVVEMLLYIAGSILSAVLVGLSVFS
                     YHKSGLKKLQYAAIAFSLFCIFLIYEGLEHFYSLDNAFTDIVIPLSGSAIILFFFLAV
                     IKKS"
     gene            complement(761..907)
                     /locus_tag="VD694_01800"
     CDS             complement(761..907)
                     /locus_tag="VD694_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11464.1"
                     /translation="MSAPDAQKLIFAWTSFGIVNTIVAAISVTDSRINIAIEFIVWRF
                     VRAI"
     gene            1063..1479
                     /locus_tag="VD694_01805"
     CDS             1063..1479
                     /locus_tag="VD694_01805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11465.1"
                     /translation="MAQQLLKQDMSVPQILGSHKKQLTQIMKQHTDEYQLKPVNLQSN
                     VDASISQIIRTYGKQFTQIRKQYTDGHGGRCVMGVIMSYYGWDGKCITNSERRLYAAL
                     VALRQAGISKELLIELNDSGATFDEIADYLDNIKNR"
     gene            1584..1853
                     /locus_tag="VD694_01810"
     CDS             1584..1853
                     /locus_tag="VD694_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW11466.1"
                     /translation="MKYRSRTEIISMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENNLLEYLEGMQTYKTTEKGLNLLKMHNEIGELLQSPMRESRIQ"
BASE COUNT          740 a          391 c          377 g          648 t
ORIGIN      
        1 acccaaagat atacagggcg ggatttacaa aatggtattt agctttgacc ataccaaagg
       61 ggtcatgtac tatactccca ccgtcatagt aaattagagt ggaaaatcaa actcttccat
      121 ttctaataga agactttatt gctaccgtca agacattttg cttaattaca gatgttataa
      181 ttcctcggaa gaagatcaaa agaggactgc cacatgtaga gagatacgct gatgattggg
      241 aaccgattat cgaagaaact ctaaaaatct gagtatctta agtcggcaga ataaagttga
      301 atcttgttta gacaacggta ctataatgct taaacctatc atcctcacaa ttatcgatgt
      361 taggtataaa attgcaaata ttcattcctt tgattcagca agttccgatc cttggagtag
      421 tggaaatgct gttatatatc gctgggtcaa tattatctgc agttttggtt ggactctctg
      481 ttttttcgta tcataagagc ggcttaaaga aactgcaata cgcagccatt gcattttcat
      541 tattctgcat ctttctaatt tatgaaggtt tggaacattt ttactcgttg gataatgcat
      601 ttaccgatat agtgatacct ttatcggggt cagcaataat attatttttc tttctggcag
      661 taataaaaaa atcctaatct aagagggtgg tgtcaagaac tctgcttatt aattcactga
      721 aaataaagtt caagaatact ggttacgcat tgtaacccat ttatatcgct ctaacgaacc
      781 tccatacgat gaattctatt gcaatgttta tcctactgtc cgtcacactt attgctgcaa
      841 ctatcgtatt tacaattcca aatgatgtcc aggcaaaaat tagtttttgt gcatctggtg
      901 ctgacatatt tcaatgcttc atcaaacaaa atgattgtga ggcttttgca ggatcccatc
      961 ctgagacaac atgcgttaga agtaaaactt agcaaaacac cgtcttattg agaacaacaa
     1021 ccggaaatcc taaataattt gctggtactt tcattatagc atatggctca acaactctta
     1081 aaacaggata tgtctgtccc tcaaattcta ggcagccata agaagcagtt aacacaaatt
     1141 atgaaacaac ataccgacga gtatcagctg aagccagtta atctacaatc aaatgtagat
     1201 gcatctatct cccaaataat acgtacatac ggaaaacaat tcacacagat tagaaagcag
     1261 tataccgacg ggcatggggg aagatgtgtt atgggtgtaa tcatgtctta ctatggttgg
     1321 gacggtaaat gcatcactaa ctcagaaaga agattatacg cggccttagt agcattgaga
     1381 caggccggta tcagcaaaga attacttata gagctcaatg attctggcgc gacgtttgac
     1441 gaaatagctg attatctcga caacattaag aatcgataag gtaactcctc atcttggtgc
     1501 gttactatat cattatgcga tttcgttttg ttctagactt ttgtgtcaac atgttaatat
     1561 agtaaattta tcagttgaaa tatatgaaat acagaagcag aacagaaata atatcaatga
     1621 ttcttgaagc ggcaaacggt ggtgcgacta aaacaaaaat catgtacaag gccttcctca
     1681 gctatgctca attgagagaa tatctatccg tacttattga aaataattta ctcgagtatt
     1741 tagaaggtat gcaaacttac aaaactaccg aaaaaggatt aaacctattg aaaatgcata
     1801 atgagattgg agagcttcta caatccccaa tgagagaatc aagaatacaa taagataaaa
     1861 atggggttca acttttagaa ctctaccgtt atcagttcaa tcaaacagta aacccctaaa
     1921 attttgttac tttgaaatat accattatct gatacttttt tctcattaag ggatcataaa
     1981 tactactgcc accaagcata tgcagatgat cttgaagtgt gatgaagcgc acttactcga
     2041 aatctgaaga aactttttaa aatataaatt ataataggat gtcaaataat tatgagaaaa
     2101 ataattgttc tatctgcttc atcgccacaa ccaaagtcac ctgcagcaac aaaatt
//
LOCUS       DASPFX010000080         3561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_8290, whole genome shotgun sequence.
ACCESSION   DASPFX010000080 DASPFX010000000
VERSION     DASPFX010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8290"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..902)
                     /locus_tag="VD694_01815"
     CDS             complement(90..902)
                     /locus_tag="VD694_01815"
                     /inference="COORDINATES: protein motif:HMM:NF013909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HXW11467.1"
                     /translation="MLDTQEILQIALDMVNWNSLPDDTGIHVDGKNIKKLMLTIDVTT
                     ADLMLAKNLGCDAVITHHPIGKTAINFFKLIDRHVDFMKENGISEKTAKKSILELKKR
                     IELRNHTQIYSSVVDSAKMLEMPLVNIHQPCDEYARRVITEKIQKTNPHLVSELITGL
                     EEIAEFKKAETNIQVVYGKPDSQVGKWVAVIAAGTNGGFQVAKSYFENGVSTVIYFHI
                     DYNDLAKLREGAIQGNLIILGHLAGDSIGMNALRKKLEDKGIQVVLKDIIKV"
     gene            1012..2052
                     /gene="twy1"
                     /locus_tag="VD694_01820"
     CDS             1012..2052
                     /gene="twy1"
                     /locus_tag="VD694_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-demethylwyosine synthase TYW1"
                     /protein_id="HXW11468.1"
                     /translation="MSCSDEYISHVDLPNLIQISASTKAKLKKAKYGVYNHSAVELCH
                     WTKKSFSNEGTCYKHKFYGISTHRCMEMTPTAMNCENRCVYCWRPTEFYDTLEMPASL
                     VDEPDMIINNLIEERRRLIVGHYGNTKTDKIKLDESLFPQHYAISLSGEPTMYPKLPD
                     LIKYLYTLKNTKSVFLVTNGQEPEMLQRLIEEDALPTQLYLSTNASNKKMFSIVNRPR
                     YRDAWERWQKSLELLSDMNTRTVMRMTIIRNYNDSKSYVDEFAQTMEKGNPHFIEIKS
                     YMHIGMSTQRLERSDMLEMDEIRNYSNLLCKSMDRFSIMDESEISRIVVLQNRERFTE
                     RWIEGYEKPLIQ"
     gene            complement(2057..2623)
                     /gene="rdgB"
                     /locus_tag="VD694_01825"
     CDS             complement(2057..2623)
                     /gene="rdgB"
                     /locus_tag="VD694_01825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HXW11469.1"
                     /translation="MRKILFASSNEGKFREIFLHLKNFDIEIEFLRFKSTEIQSEILE
                     DVALEKSRIAYEKIGQPLIVEDTGLFINSLNGFPGPYSSYVFQTIGNNGILDLLSKKT
                     NRFALFRTVIAYNDGTDNVTFTGETKGSISDHITEGGWGYDPIFTPKGSSLTYGQQGI
                     TNKMNISHRTHALNHFAEWYCKNYSKRQ"
     gene            complement(2793..3386)
                     /locus_tag="VD694_01830"
     CDS             complement(2793..3386)
                     /locus_tag="VD694_01830"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex kinase/ATPase Bud32"
                     /protein_id="HXW11470.1"
                     /translation="MFKGAESNIYLTKWYGKMAISKIRIPKVYRQRLLDGDLRRRRTI
                     NESRMLSLAKEFGLQTPYIFFVDPFRAEIVMEFVPGTRASKVLTSRICFDIGKFVSTL
                     HLHDIIHGDLTPTNFIADRKMTMVDMGLSFYSTRREDKAMDIRLFKEILNSTFHNSFS
                     RFFDQFLDGYQSVNSKELEKILQRIDTIESRKRYAVA"
BASE COUNT         1159 a          636 c          598 g         1168 t
ORIGIN      
        1 agccgcctat actgaccagg ctatactacg aaggccattc aacattggtt tgttgtatct
       61 agagtatata attgttagat aaaggagttt catactttaa tgatatcttt taaaacaact
      121 tggattcctt tgtcctccaa ctttttacgc aaagcgttca ttccaattga atcgcccgcc
      181 aaatgcccaa gtattattaa gttgccttga atagcgcctt ctctcaattt ggccaagtcg
      241 ttataatcaa tatgaaaata aataaccgtt gagactccat tttcaaagta actttttgct
      301 acttgaaatc caccattggt tccagctgca attactgcga cccactttcc cacttgtgaa
      361 tctggtttac cgtagacgac ttgaatgttt gtctctgctt tcttaaattc tgctatttct
      421 tccaaacctg taattaattc tgatactaaa tgtggatttg ttttttgtat cttttccgta
      481 atcactctcc tagcatattc atcacatggt tgatgaatgt ttaccaatgg catttccaac
      541 atttttgcag aatcaacaac agaggaatat atctgagtat gattccgaag ttctattctc
      601 ttctttagtt ccaaaataga ctttttggcc gttttttctg aaataccatt ttccttcatg
      661 aagtcaacat gcctatcaat taacttgaaa aagttaatag cagtttttcc aatgggatga
      721 tgagttatca cagcatcgca tcctaaattc tttgcgagca tgaggtcggc ggttgttaca
      781 tctatggtta acattaactt cttgatgttc ttaccatcaa catgaattcc agtatcgtca
      841 ggtagcgagt tccagttaac catatcaaga gcaatttgca atatttcttg agtatctaac
      901 atattgattt tgcttgtctt agattagtaa taatataaag aagttttgga aggaaggaca
      961 aaaagaagac atttaacatt taaatgtcat tgtgcgattc gttcttgtaa tatgagttgt
     1021 tctgatgaat acatatcaca cgtagattta ccaaacctta tccaaatctc agcttctacc
     1081 aaggctaaac taaaaaaggc aaagtatggt gtttataatc actctgcagt tgaactatgt
     1141 cattggacaa aaaagtcttt ctcaaatgaa ggaacctgtt acaaacacaa attctacggt
     1201 atttcaactc ataggtgtat ggaaatgaca ccaacagcca tgaattgtga aaatagatgt
     1261 gtttactgtt ggcgccctac tgaattttac gatactttag aaatgcccgc aagcttagtt
     1321 gatgagccag atatgataat aaataattta atagaggaac gaagaaggtt gatagtagga
     1381 cattatggta acactaaaac tgacaagata aaacttgatg aatcactttt tcctcaacac
     1441 tatgcaatat ctctttcagg agaacctact atgtacccga aattaccaga tttaatcaaa
     1501 tatctgtaca ctttgaagaa tacaaaatca gtgtttttgg ttacgaatgg ccaggaacca
     1561 gaaatgcttc aaagattgat agaggaggat gcactcccta ctcaattata cctttcaact
     1621 aatgcttcaa acaagaaaat gttttcaata gttaatcgac caagatatag agacgcatgg
     1681 gaaagatggc aaaagagtct agagttacta tcagatatga atactagaac agtaatgaga
     1741 atgactatca taaggaacta taatgattca aaaagttatg tagatgaatt tgcccaaaca
     1801 atggaaaaag gcaatccgca ttttatagag attaaatcat atatgcatat aggaatgtct
     1861 acacaacgtt tagaaagatc tgatatgttg gaaatggatg aaattaggaa ttattcaaat
     1921 ttgctttgta aatcaatgga caggttctct attatggatg aaagtgaaat ttcaagaata
     1981 gtggttcttc aaaatcgcga aaggttcact gaaaggtgga ttgaaggata cgaaaaacca
     2041 ctaatacaat gaaagattac tgtcgtttag aataattttt gcagtaccac tccgcgaaat
     2101 ggttcaatgc atgagtcctg tgcgatatat tcattttgtt tgtaattccc tgttggccat
     2161 acgtaagaga tgaacctttg ggtgtaaata ttggatcata accccagccc ccttccgtaa
     2221 tgtgatcgct tatagaacct ttagtttcac cggtaaaagt cacattgtca gtaccgtcat
     2281 tatatgctat gactgttcta aagagcgcaa atctatttgt cttcttcgaa aggagatcta
     2341 gtattccatt atttccgatg gtttgaaaaa catatgagga atatggccct ggaaatccgt
     2401 tcagtgaatt tataaaaagc ccggtatcct ctactattaa cggttgacct attttttcat
     2461 atgctattct agatttttct aaggcaacat cttccaatat ttctgattga atttctgtac
     2521 ttttaaatct cagaaattct atctctatgt caaagttctt gaggtggaga aagatttctc
     2581 tgaatttacc ctcattagaa ctagcaaata atatttttct caattttaga aaaaaccaaa
     2641 cactaaaata aaaaattatc tgaatattca tttgtgctat tgttcctaga tggaatatca
     2701 aaagaattat ctatagagta taaattgatc gatatttgta ccgtctctcc aatcatgcca
     2761 gatttccact agagacaaat actaaatgaa cttcatgcga cagcatatct tttccttgat
     2821 tctattgtgt caattctctg tagaattttt tccaactcct ttgaattaac tgattgatat
     2881 ccgtctaaaa attgatcaaa aaatctagag aacgaattgt gaaaagtgct attcaaaatt
     2941 tccttaaata atctaatgtc cattgcctta tcctcccttc tggtagaata aaacgagagt
     3001 cccatatcca ccattgtcat ttttctgtcg gctatgaagt tcgttggagt gagatctcca
     3061 tgaataatat cgtgcaaatg aagggttgat acgaattttc ctatgtcaaa acatattctt
     3121 gatgttaaaa ctttacttgc tctagtccca ggtacaaatt ccatgacaat ctcagctcga
     3181 aaaggatcta cgaaaaagat gtatggtgtt tgtagaccaa actctttagc caaactgagc
     3241 attctagatt cattaattgt tctccttctt ctcaaatccc catcaagcaa cctctgtcga
     3301 tatacttttg gaatcctgat ttttgaaatt gccattttgc cgtaccattt tgtcaggtaa
     3361 atgtttgact cggctccttt gaacaacaat ttgacgtaat actgcaatga taatataacc
     3421 aaagattgga gataaaaatg tggtaccaca gatagatccg aatccgggag aaaaattggt
     3481 tctcgaggaa gattgttctg aggtaaaact gggtagtggc attctaagtt taactaatca
     3541 gcgaattatt tttgaaaaaa c
//
LOCUS       DASPFX010000081         2190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_900542, whole genome shotgun sequence.
ACCESSION   DASPFX010000081 DASPFX010000000
VERSION     DASPFX010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_900542"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VD694_01835"
     CDS             <1..298
                     /locus_tag="VD694_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11471.1"
                     /translation="IPLIYAIYNTESVAVVFGSLIINPLWWALSLGAGFGGNGTVIGS
                     SAGIVATGLAEVNGHRITFNQFIRVGFPFMIASVGVGSVVLFIDVLIRLRVGVL"
     gene            complement(450..1241)
                     /locus_tag="VD694_01840"
     CDS             complement(450..1241)
                     /locus_tag="VD694_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HXW11472.1"
                     /translation="MKSTKYFFVSGILLLLYRNLFAAIDKMFFIWQILFPVFQIYIMG
                     YAYSALIGDQGISIGTSSISYVAFLTTGMMGFNVMQGSQIAGTIFWNDRKNGMFHQLL
                     AMPFNKIQYIIANLVTLIIIGLTSAAAIILIGLPTIFQDMNITLWGIAYTIFALVAGS
                     IFFGSFTIILSTKMKSSETYNVFSNGLFIFFIFVSSVFYPAEGLPQPLSTAFYFNPLT
                     YIADITRAGIFSQIDTFVNLEVLALAMFSIGVFVIATRAMIKLQI"
     gene            complement(1249..>2190)
                     /locus_tag="VD694_01845"
     CDS             complement(1249..>2190)
                     /locus_tag="VD694_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HXW11473.1"
                     /translation="GISFAVKYGTVFGFLGPNGAGKTTTLKVLTSLLNPSSGDITIFG
                     KDLFRKQSEIKRKIGVVSQNPSFEANLKVERTLDLYGLLWGLKDRKVRKSKVKEILKT
                     FDLESIKNSKNDELSIGQRRRVQLAREFMHDMDLLFLDEPTVGLDPSARRMLLDHIKK
                     HVKSGLTVFFTTHIMEEAEYLCDEIAIIDNGIIIAFDTPIGLKQRYGRMNKSIEITFK
                     DNLNEPFVDSLKDIVKENKRASDDDELNNYTSPEITLNGKNGVKIKVNDIEKVISEIF
                     QVVPKNGMEIENISVNSPSLEEIFLSIVGNSKDKSNI"
BASE COUNT          693 a          401 c          362 g          734 t
ORIGIN      
        1 gatacctctc atatatgcca tctacaatac cgaatcggta gctgttgtgt ttggaagcct
       61 tatcataaat ccattatggt gggcattatc acttggtgcc ggatttggag ggaatggtac
      121 agtgatagga tcaagtgctg ggatagtagc cactggatta gctgaagtaa atggtcacag
      181 aattacattt aatcaattta tcagagttgg atttcctttc atgatagcaa gtgtcggagt
      241 aggatccgta gtattattta ttgacgtatt gattagacta cgtgtcggag tattatagtc
      301 agacaaaaaa catctgacaa ttaaatcatc atggatgaag aaacagatat tttgcaatag
      361 gacttggatg atattttctt tttttcctag atgtcagtta gttccttaaa tagagataat
      421 cgagccaaga aaatttgagt cagctttgtt tagatctgta actttatcat agccctggta
      481 gcaattacaa atacacctat ggaaaacatt gctaaagcaa gaacttctaa atttacaaat
      541 gtatctatct gagaaaatat cccagctcta gtaatatctg ctatgtatgt tagtggattg
      601 aaatagaaag ccgtggatag cggttgaggt aaaccttccg caggatagaa cactgaacta
      661 acaaagataa aaaatatgaa aagtccgtta ctaaatacgt tatatgtttc gctacttttc
      721 atctttgttg aaagaattat ggtaaacgat ccaaaaaata tggaacctgc tactaatgca
      781 aatatagtat atgctattcc ccataaggtt atattcatgt cctgaaatat agttggtaaa
      841 ccaattaaaa tgatagctgc tgcacttgtc agtcctataa ttatgagcgt tactaaattt
      901 gcgattatgt actgtatttt attaaatggc attgccaaaa gttgatgaaa catcccattc
      961 tttctatcat tccaaaaaat agtaccagct atttgacttc cctgcatcac attaaatccc
     1021 atcatacctg ttgtcaagaa cgcaacataa gagatggatg acgttcctat gctaattccc
     1081 tgatcaccta ttagggcaga atacgcatat cccattatgt aaatttgaaa cacgggaaac
     1141 aatatttgcc atatgaaaaa cattttatct atagctgcaa aaaggtttct gtatagtaag
     1201 agtaagatcc ccgatacaaa aaagtacttt gtagatttca ttgcctcatc aaatattaga
     1261 tttatccttt gaatttccca ctatagagag gaagatctct tccagtgatg gtgaatttac
     1321 tgaaatattt tctatctcca taccattttt aggaacaact tgaaatatct cagaaataac
     1381 cttctcaatg tcattgacct tgatcttgac tccattctta ccattcaaag taatttctgg
     1441 agaagtgtaa ttgtttagtt catcatcgtc ggaagctctc ttgttttcct ttactatatc
     1501 ttttaaacta tccacaaagg gttcattcaa gttgtccttg aatgtaattt ctatagattt
     1561 attcatgcgc ccataccttt gtttcagtcc aattggtgta tcaaacgcga ttattattcc
     1621 gttatctatt attgctatct catcacaaag atattctgcc tcttccataa tatgggtagt
     1681 gaaaaaaact gtcagtcctg atttgacatg tttttttata tggtccagaa gcatacgtct
     1741 tgctgaaggg tctagtccca cagtaggctc gtcaagaaaa agcaagtcca tatcatgcat
     1801 aaattctctg gcaagctgta cccttcttcg ctgacctata gaaagttcat cattctttga
     1861 atttttaata gattctaaat caaatgtctt taaaatttct ttcactttac tttttcttac
     1921 ttttctatcc tttagacccc acaataatcc ataaagatca agagtccttt ctacctttag
     1981 gttagcctca aaactgggat tctgagaaac aactccaatc tttcgtttga tttcagattg
     2041 ttttctaaaa agatctttac caaatattgt aatatcacca gatgatggat taagaagact
     2101 tgttagaacc ttaagagttg tagtctttcc ggcgccgttt ggacctaaaa aaccaaatac
     2161 cgtcccgtac tttactgcaa aggatatgcc
//
LOCUS       DASPFX010000082         3150 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_616567, whole genome shotgun sequence.
ACCESSION   DASPFX010000082 DASPFX010000000
VERSION     DASPFX010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3150
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_616567"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            197..472
                     /locus_tag="VD694_01850"
     CDS             197..472
                     /locus_tag="VD694_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11474.1"
                     /translation="MESTPSTLVLSHEERQKRLEEFHKGYDENVLDENLRKEKSRVIA
                     TLSEYFNREMILADECLIKGDESGAAVYSHIAKVIDAALKELEESEE"
     gene            complement(586..720)
                     /locus_tag="VD694_01855"
     CDS             complement(586..720)
                     /locus_tag="VD694_01855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11475.1"
                     /translation="MLLSNVQSLEMQQMAKGTQLAEPTALGTLVFRISSRVLRNELTS
                     "
     gene            1428..1865
                     /locus_tag="VD694_01860"
     CDS             1428..1865
                     /locus_tag="VD694_01860"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HXW11476.1"
                     /translation="MTIRIDLSKEVKVSVSQVLDYFTNVEALPRFHPEYIKNVTIVSR
                     EDGENNNIEFEQEGSFHGKKIKSINKLTRLGNENTIRIEIIDGNGKGSVTTIKCQEVS
                     PGNTQIRLEGELHYGILEKFLSRSIHGITEKTLEEDIHNLEQK"
     gene            complement(1929..2252)
                     /locus_tag="VD694_01865"
     CDS             complement(1929..2252)
                     /locus_tag="VD694_01865"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HXW11477.1"
                     /translation="MLDVLYLSGVVIAIAVATKIAGCGIPSTIFLKDRSKALRVGIGM
                     ISRGEVGLIVAGVGVSAGILTSDIYTTVIIMVAFTTIITPIWLKRSFLKDKDTNLMPQ
                     HSPTS"
     gene            complement(2222..2581)
                     /locus_tag="VD694_01870"
     CDS             complement(2222..2581)
                     /locus_tag="VD694_01870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11478.1"
                     /translation="MKIKSLLKDLEKRIDNEKLSRTEKIAMKVYQVKAEYLKYVRNII
                     RSFADQITKVKHLMKWLRPIFESLNIVLDSLQKIFPQLGVVKEFKEQLRLRYGSSQHS
                     AYQTSRRICWMYYTSQG"
     gene            2580..2885
                     /locus_tag="VD694_01875"
     CDS             2580..2885
                     /locus_tag="VD694_01875"
                     /inference="COORDINATES: protein motif:HMM:NF037565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath C-terminal domain-containing
                     protein"
                     /protein_id="HXW11479.1"
                     /translation="MEKSVQRSTQWAVFEPNNERLWSRVKASLTQFLTTVWKSGALMG
                     TTAEEAFFIRVDRTTMTQNDIDNGRLIVVVGIAPTKPAEFVIFRFAQTQAGVKITEL"
     gene            2935..>3150
                     /locus_tag="VD694_01880"
     CDS             2935..>3150
                     /locus_tag="VD694_01880"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HXW11480.1"
                     /translation="MHFIHRYGAMPAGRLSELTGLTMGAVTGIIDRLEKAGYVRRTND
                     PKDRRRTIVEPIRNKKLERKLEMVFVPL"
BASE COUNT         1047 a          525 c          628 g          950 t
ORIGIN      
        1 atactttact gtgggctact gtattactat caatattctt gagagaagag actgtaatca
       61 tttgggatat gcaattgcac aaggcgaggt attatttttg tgatttttgt ttgacccaga
      121 aattcttact atattgattt attttctcga cttctccggt tgatacctca taggcataac
      181 ttgaaataac tagtatatgg aatctactcc aagtacattg gtcctaagcc atgaggaaag
      241 acaaaagaga ttagaggaat ttcataaggg ctatgacgag aatgttctcg atgagaatct
      301 taggaaagag aaaagtcgag taatcgccac tttatcagag tattttaata gggagatgat
      361 attggctgat gaatgtctca taaaaggaga tgaatctggc gcggcagtct attctcatat
      421 tgctaaagtt atagatgcag ccttgaaaga acttgaagaa tcagaggaat aaatctcggc
      481 gacagctata aggcgtctat ttctttaaga aatagttttc tcttataaat tgaacaagag
      541 atagccaaac agaatttatt attagttaaa ttccgaaaaa gtctattatg aagttagttc
      601 atttctgagg accctggaag aaattctaaa gaccagggtc cccaatgcag tcggttctgc
      661 tagttgtgtt ccttttgcca tctgctgcat ttcaagggat tggacatttg aaagcagcat
      721 tactattttg ggaatatgtt ttaattaaat aagatgaaag tagattaagg attttgaaac
      781 aggatctgaa gcatgaataa aattacttta tcttacttcc tattatgatt tttatttagt
      841 actatttaac aagagaaggt taagaaaaga acatatgctg aaatcatgtg ttagtgtgaa
      901 ctactaggaa gctagtttgt gacagattct aatttcatag gcttcatagc acctaacaca
      961 tatgcattgt ttatataata aacatgttct aactcaaatg tatgagcaca aacaaagaaa
     1021 tgacaagagt atctatgaag atacaaaaga atgctcagag ttgaaatgat gggatagact
     1081 atgatcgtag ctgatttttc caatccttat ttcaatattg attaacaaag atatgcttaa
     1141 tgaagatgct gagaccgatt attgggatgc ttcagaccca ttacctatga gtcatcttaa
     1201 aaatatgttc aaggtaagac gatatatttg ccgggtttgc aagatgaaat ttcatacacg
     1261 acgaaatact caagcacaca taaaggatga gcatcgcaat cgtaataatc aagtgttttg
     1321 agatatatag aaaaagtaga aggtaggtag acttacttat taaggtgcca ctattgcgta
     1381 taccgatttg catatatttt gatgtggctc taatatattg gcactaaatg actattcgaa
     1441 ttgatctaag caaagaagtt aaagtatcag tttcacaagt cttggattat ttcacgaatg
     1501 tagaagcact ccctcggttt catccagagt atatcaagaa tgtcacgatt gttagtaggg
     1561 aagatggaga aaataataat atcgaatttg agcaggaagg ttcatttcat ggtaaaaaga
     1621 tcaagtcaat taataagctc actagacttg gcaatgagaa tactattcga atcgaaataa
     1681 tagacggaaa cggtaaagga agtgtaacga ccatcaaatg tcaggaagta agtcctggca
     1741 acacccaaat aagattagaa ggagaacttc attatggaat attagaaaaa ttccttagta
     1801 gatctataca tggcattacc gagaaaacat tagaagaaga tattcataat ctcgaacaga
     1861 agtgagaagg tgccttttga acaatgacag ataaaagttg ataaacaata taattattac
     1921 ttctcatttc aagacgtagg cgaatgctga ggcatcaaat ttgtatcctt atctttcaaa
     1981 aacgatctct tcagccatat tggggtaata atagtagtaa aggcaaccat aataataaca
     2041 gtagtatata tatccgaagt caatattcca gcagatacac ctacgcctgc aacgataagt
     2101 ccaacctcac ctcttgaaat cataccgatt cctactctca atgctttcga tctatctttc
     2161 aaaaatatag tggaaggaat cccacatcca gcgatttttg tagcaacagc tatggctata
     2221 actacccctg agaggtataa tacatccagc atattcgtct acttgtttga taagccgagt
     2281 gctggctact gccataccta agcctgagtt gttccttgaa ctcctttacg acccctaact
     2341 ggggaaagat tttttgtaga ctgtcaagaa ctatgttcaa tgattcaaaa attgggcgca
     2401 gccacttcat aaggtgtttg accttggtta tttgatctgc aaacgagcgt attatattcc
     2461 ttacatattt gagatactct gccttaactt gatagacttt catagcgatc ttttcagttc
     2521 gggatagttt ttcattatct attcgctttt caaggtcttt caggagactc tttatcttca
     2581 ttgaaaaatc agttcagaga tcgacccagt gggctgtttt tgaaccaaac aatgaacggc
     2641 tgtggtcgag agtcaaggct agtcttactc aatttctaac gactgtctgg aaatccggtg
     2701 ctttgatggg aacaacagca gaagaagcat tttttattag ggttgacagg actactatga
     2761 cccaaaatga tattgataac ggaaggttaa tagttgtagt tgggattgct cccacaaaac
     2821 ctgctgaatt tgtgattttt aggtttgcgc aaacacaggc tggcgtaaag attacggaat
     2881 tataaaataa tttaatgagg ctagtatgac atatagcaat gtctcctccc atgcatgcat
     2941 tttattcatc gctatggagc catgccagct ggcaggctct ctgaattgac aggcttgacg
     3001 atgggtgcag tgacaggcat tatcgatcgc ttggaaaaag cgggttatgt aagaaggaca
     3061 aatgatccaa aggataggcg tcgaaccatt gtcgagccca ttcggaacaa gaagttagaa
     3121 agaaaacttg aaatggtctt cgttcccctc
//
LOCUS       DASPFX010000083        10468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_201824, whole genome shotgun sequence.
ACCESSION   DASPFX010000083 DASPFX010000000
VERSION     DASPFX010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10468
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201824"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..374)
                     /locus_tag="VD694_01885"
     CDS             complement(<1..374)
                     /locus_tag="VD694_01885"
                     /inference="COORDINATES: protein motif:HMM:NF015404.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11481.1"
                     /translation="MEGSTIGKEENFDDLDKVFKSPDIRTETTSETTDIKENPSEIDA
                     SEIDAVNGNSSSGNIETSSQIESKSQESDSKFFAIRTTGGQEHIVVNLAQNRINSKKI
                     PVRSILLLDSFKGYIIIEAPDS"
     gene            complement(515..706)
                     /locus_tag="VD694_01890"
     CDS             complement(515..706)
                     /locus_tag="VD694_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11482.1"
                     /translation="MAKIIPKYVRVGMLLLVMGAIIVGIGTYLSKGSLSFYGLIMAIC
                     GFVIYFAASIASRRKNMQS"
     gene            831..1865
                     /locus_tag="VD694_01895"
     CDS             831..1865
                     /locus_tag="VD694_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HXW11483.1"
                     /translation="MKIAVVGMGVAGAYLMNGLSNDHDNYVKGFERMPIEEHDAVCAW
                     ATCENVMQDLIKECGLKFDDYILHEGKRMKVDMSQSDKEYYSIDVGLKGMVTYDKIKL
                     IKDMTRGTDIQFGVIPKKENLESEFDIIIDATGFHRNYLPRPQNEMWIPCVQYKVKYH
                     DKTPFDDFYLKAFPSMKGYFWYFPLENGYAHIGAGDYERKNNNAFVEEFLKKHKCEVI
                     KKVGRPVRISPPKNSEPFTDGRKTVGVGESIGTVYPLLGEGIIPSTWCAQLFIKHISD
                     FNAYRREVLKKFQIYALVFKFIQMKINGKFNIFKNAVEVLKIYNHMKHEEKRYGMEVK
                     LKDLIKVSRI"
     gene            complement(1976..2164)
                     /locus_tag="VD694_01900"
     CDS             complement(1976..2164)
                     /locus_tag="VD694_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11484.1"
                     /translation="MIVSYFLIFIIGPLHITLFNNSTDKLISSIVKASLAIGLVVVLI
                     LLLGILKTRYLRKTLLKS"
     gene            complement(2212..3228)
                     /locus_tag="VD694_01905"
     CDS             complement(2212..3228)
                     /locus_tag="VD694_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine-1-phosphate transferase"
                     /protein_id="HXW11485.1"
                     /translation="MVYPSDVIINAVIVSAISFLIIFFITPSFIKYLNKKGKTVVDYH
                     KPGKPFVPRPAGPIILLGIVIAEIILYLLILDVKIISLLLTTIIAFFIGYIDDLKTMP
                     GWFKPVALILAAIPIIVLGSHGNYLGLIFDSAFIPLLYIPLILSIIPIVGNTINSIDV
                     FNGVASGFVIITMIPLLVSVILFGNTNIFLMGLPLFFGCIAIFHYHKFPSKIFLGDSG
                     TLLIGSMYAAISIAGNSEIIGVIALLPAVMNSFLFLSSVKKIVEHRQVKTRPVTICDD
                     YRLMASKESRAPATLVRLILARGPLSEKEVINRILILGMFSSILAFISIVIQYSFMKG
                     IISL"
     gene            complement(3280..5409)
                     /locus_tag="VD694_01910"
     CDS             complement(3280..5409)
                     /locus_tag="VD694_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HXW11486.1"
                     /translation="MKEYLQELLRLLNYGSLYPPQELALSKGVMNGNNILVTTPTSSG
                     KTLIGLMGMINILTKRKKIVYLTPLKALASEKFNEFKIIKDLSCFKNRKIDIAISTGD
                     YDSSGTELIDKDIIILTNEKLDSILRHDSNWIFDVGLFIIDEIHLLTERERGPTLEII
                     LTKIKLMPQRPQIIGISATISNSDEIADWLKCEPIQSKWRPTELIEGVYNYGKVEMNN
                     GTTFEIDNIGVADNSSSGIISLAMDSITNDGGQSLVFAETRKRTVSLAKKTSDIVPKI
                     LDKSSKLSAQKIGAEILKQGDDTELNRTLSNTVTKGVGFHHAGLGLKSRQIVEDAFRK
                     GIIKILFATPTLAAGVNLPARRVVITSIFRYDYEYGGNVPLSVLQYKQLCGRAGRPAY
                     DKYGEAIIIADSRTNPEDLYNHFVLGDPEPIVSQLMNETALRVHVLGVIASRSKILKS
                     ELLYFFEETFLSKYHRNETISFEIDTLLHYLHDEGLIIMRKELLMATKFGKRISLLYI
                     DPKTGIHFKKNLDFYNSNKYDDGINYLHWICDSYDFYPKLTLRQNEIEYFERMFEKHE
                     LGSHGLSNYDYSLKNMIILLEWMDETSEANLNEKFGVEPGDLYRMVETTYWLSYCLYE
                     IAKLIGRKDLLPEIAKLRFRIKHGIKSELIPLVQLEGIGRIRARALYKAGITSVTEID
                     KISESKLGSIPKIGVKLAKKLKNQIKN"
     gene            complement(5543..8725)
                     /locus_tag="VD694_01915"
     CDS             complement(5543..8725)
                     /locus_tag="VD694_01915"
                     /inference="COORDINATES: protein motif:HMM:NF026240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LAGLIDADG family homing endonuclease"
                     /protein_id="HXW11487.1"
                     /translation="MTEQKQQTTSAISDELESFLRAYKDRDGNYKYFDRINNMMASNT
                     TFIVVDYIDLDRNKPELTKLITDTPDDMFDAFNKAVYSILREIHYDYAEEIKDKIKVR
                     IGNYSVQKGLREINADVINKLISVPGMVVRTSEIKPLAKKIAYACLNCNTLNEAPLKG
                     LTLKKPTRCTQCSEKELEMDPENSYFTDFQLVRIQELPEDLPAGQLPHYVEVTVMDDL
                     VDRCRPGDRVLLTGIVRIEQEQSLQVRTSLFRLRMEGNNIEFLAGIFGNKDQRSVDSK
                     DERILDRIFISREDEKRILSIKDMPDAYDKLVASFAPHIYGHEVIKESILLLIVGSVT
                     KKLADGSNRRGDINIFLVGDPGTAKSEMLKFAAKIAPRGLYTSGRGTTAAGLTAAVIR
                     DKSGIMMLEAGAVVLGDQGLVCMTEDTEIYTGNSLVPVGKLWEDMKGEVYISKSGREA
                     KKDLIPVGIYDNKYRVDMEGNAFAIMRKRHTGDVIKLTFSSGLTLKVTPEHLLRRSTH
                     VKNLWVQAQDVSPGDILRSPIRVQKPSCTLNITEEDAYVIGCIYGDGHITPYSITISQ
                     SKVNSDVIYNIQQNSNVFSLYNKGDRTHTIGKYVLVSRMFQLYTADKILLKKTRFLIK
                     NQSINNVLLLSDKSLWAFLAGVFDTDGDFNHVHGKVVAARMYPSTSQHELAVMLYLLR
                     RLGVYAKLHKTRKGFPLIQITGSDVTRFAEGIKSHSIKTKREGPIEIDHKGSIQRGIE
                     KVVLVERIPYDGYVYDLSVGKHHNYEASLIYIHNCIDEFDKIKSEDRSALHEVMEQQT
                     CSVAKGGIVATLNARTSILSAANPKYGKYDPFRNITENVEPLPIPLLTRFDIIHVIRD
                     SADTERDNRIASHILEIHRDIEHAAQSAIEIDLFRKYLAYAKQIEPKLTPEAIDILRK
                     YYLQMRNVDSEGMITATPRQLEGLVRLATARARLLLKDSVDAADAERAIYLVSQMLET
                     VGIDVNTGKVDLGVLHGKPLSETSKLKTFTDVFNGLSGEDKNDVEEKNFVDELVKTGK
                     FTEDEAKDFIRKAMQNGQIYERRAGFYAKA"
     gene            complement(8725..9261)
                     /locus_tag="VD694_01920"
     CDS             complement(8725..9261)
                     /locus_tag="VD694_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11488.1"
                     /translation="MSSSTFLTQSVFDSLKNRYLLEYLLEEVRITFKSDARISINDIH
                     IDAKEGDILPLPRWLTRILSKRNLIENQDYEVSSYVSKALNRERIAKPHDISSVDVDF
                     YIRVNDFLESLSEKERETLMVSLNSFVMSRLGKIVKLAAASSLSAETESKLSAEERQL
                     YNFVHTSSLAFKESVLHK"
     gene            9367..10359
                     /locus_tag="VD694_01925"
     CDS             9367..10359
                     /locus_tag="VD694_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication factor C small subunit"
                     /protein_id="HXW11489.1"
                     /translation="MPQAEAKNLSDLMWVEKYRPIKLDDVVNQKEIVESLKNLMKQPA
                     EMPHLLFTGPAGVGKTTTALCMSRQLLGEDWKRDTLELNASDERGIKMVRERVKEFAS
                     VFKIRTSEKEERKFRIIILDEADEMTSEAQTALRRIIEDSSETTRFVIICNYLSQIID
                     PIQSRCAIFRFKRIEKEIIENHLKSLCKKEGIKYDDKAISQIFESTNGDLRHSINILQ
                     TASAMGSVSVSNVQASLGLSGKSMVSEIIKMAMSGKFNDARIKLLELTAVYGMSEFDF
                     LKYAYEAVYSLKLSHPEDFASLIAEYDYRLTHGSHPEIQLTAFLAQLSRIGTKQ"
BASE COUNT         3204 a         1895 c         1805 g         3564 t
ORIGIN      
        1 ttagagtcag gcgcctcgat tattatatac cccttaaaac tatcaagtag taggattgaa
       61 cgaacaggaa tcttctttga gttaatccta ttttgtgcca aatttactac aatatgttcc
      121 tgaccaccag ttgtccttat cgcaaaaaat tttgaatctg attcctgact cttgctttct
      181 atttgagaac tagtctcaat attaccacta gatgaattac cgttgactgc atctatttcg
      241 gaagcatcaa tttccgaagg attttctttt atatcagtcg tttcggaggt agtctcagtt
      301 ctgatatctg ggcttttaaa cactttatcc agatcatcaa aattctcttc tttccctatg
      361 gtgctacctt ccaattgtct tcaggatacg ataacttggt acaatttata agtttaatca
      421 aaagccgctt tattttgaaa aattcgtcac atatgatgaa ggtatgaaag gatggatgat
      481 ggatgatgga tgatcatatc agaatggaac ttccttagct ttgcatattt ttccttcttg
      541 atgcaataga agctgcaaaa taaatgacaa atccgcatat tgccattatt aatccataaa
      601 atgacagaga acctttgctc aaatatgttc caatccctac aattatggct cccatgacaa
      661 gcaggagcat tccgactcga acatatttcg gaataatctt ggccaacttc tattcctaga
      721 aatcttaatt taataactaa tataacttgt cgttcgaaaa aatcaccaaa acctgaataa
      781 actaaaaaca tcacattttt atttaccaat atgttaattg tcgttaccaa atgaagatag
      841 cagtcgtagg aatgggagtc gcaggagctt atcttatgaa cggcttgagt aatgatcatg
      901 acaattatgt taagggattt gaaaggatgc ctattgaaga acatgatgca gtttgtgcct
      961 gggcaacttg tgaaaatgtt atgcaagatt tgattaagga atgtggacta aaatttgatg
     1021 actatatttt acatgaggga aaaagaatga aggtggatat gagtcagagt gataaagaat
     1081 attacagtat tgatgttgga ctaaagggaa tggttactta tgacaaaata aaattaatca
     1141 aggacatgac aagaggtact gatatccaat ttggtgttat tccaaaaaaa gagaatcttg
     1201 aatcagagtt tgatattatt attgatgcta caggctttca ccgaaattac ttgccgcgac
     1261 cacaaaatga aatgtggata ccctgtgttc aatataaagt gaaatatcat gacaaaactc
     1321 catttgatga tttttacctc aaagcttttc cctctatgaa gggttatttt tggtactttc
     1381 cattagaaaa tggttatgcg catatcggag ccggagatta tgaacgaaaa aataacaatg
     1441 cattcgttga agaattcttg aaaaaacaca aatgtgaagt aatcaagaaa gttggtcgtc
     1501 cagtcagaat aagtccgccc aaaaattccg aaccttttac tgatggtagg aaaactgtag
     1561 gggtgggtga atccattggt actgtatatc cattgcttgg tgaaggaatc attccatcaa
     1621 catggtgtgc gcaattattt atcaaacaca tttctgattt taatgcatat agaagagaag
     1681 ttttaaagaa gtttcaaatt tatgctcttg tcttcaagtt cattcagatg aaaattaatg
     1741 gtaaatttaa catcttcaag aatgctgttg aagtactcaa gatttacaac cacatgaaac
     1801 atgaagaaaa gagatatgga atggaagtaa aattgaaaga tttgatcaag gtctcacgaa
     1861 tatagatcta attaccaatt tagaatatat tgtcattatt atttttcatt acatcatagc
     1921 tactgtcttc agtttaggaa ataataatac tatttactca tcaggtctat caggtctaac
     1981 tctttagtaa tgtttttcgt aagtatcttg ttttaagaat gcccagtaac aaaatcagca
     2041 cgactaccag tccaatagct aatgatgctt tgactattga ggagattagt ttatccgtag
     2101 aattgttgaa caaagtgata tgtaatggac caattatgaa tatcagaaag tatgaaacta
     2161 tcattatcat actccacatg ataaaaataa gagcaaaaag tccaaacatt ctcataacga
     2221 tattattcct ttcatgaatg aatattgaat aacaattgaa ataaatgcca atatcgatga
     2281 aaacattccc agtataagga ttctatttat tacttccttt tccgataatg gacctctggc
     2341 cagaataagt cttactaatg tcgccggtgc tcgactttct ttggatgcca ttaatcgata
     2401 atcatcacat attgttactg gtcttgtctt gacctgtctg tgttccacta ttttcttaac
     2461 actagagaga aacaagaatg aattcattac tgctggtaag agtgctataa caccaataat
     2521 ttctgaattt ccagctattg atatggcagc atacatggat cctattaaca acgttcctga
     2581 atcacccaga aatattttac ttggaaattt atgataatga aatattgcaa tacagccaaa
     2641 gaacaaagga aggcccatta aaaagatatt agtattacca aataagatga cacttactaa
     2701 taatggtatc atagttatta tgacaaaacc gctagctaca ccattgaata catcaatgga
     2761 gtttatagta ttaccaacta ttggtattat cgaaagaatg agtgggatgt ataacagagg
     2821 tatgaatgca ctatcaaaga ttagtccaag ataatttccg tgacttccta atactataat
     2881 aggtattgcc gctaatatca aagcgactgg tttaaaccaa cctggcatag tcttcaagtc
     2941 atcaatatac ccaatgaaaa atgcgataat agttgtcaat aatagagata tgatttttac
     3001 gtctagtatt aacaaatata atattatttc agctattact attcctaata gtatgatagg
     3061 accggcgggc cttggaacaa aaggttttcc aggtttatga tagtctacta ccgttttccc
     3121 tttcttgttg aggtatttaa taaaagaagg ggtaataaag aaaataatca agaatgagat
     3181 ggcagataca ataactgcat ttatgataac atcggatgga taaaccaatt ttcaatcacc
     3241 tgttgtagct atactggaaa tatctttatg tactcatttt taattcttga tttgattctt
     3301 tagttttttt gctagtttta cccctatttt tggtatggac cctaattttg attcagaaat
     3361 cttgtcaatt tcagtaacac ttgtaattcc tgccttatat agagcccttg ccctaattct
     3421 tccaattccc tcaagttgga ctagaggaat tagttctgat tttataccgt gtttaattct
     3481 aaatcgtaac ttggctattt ctggcaaaag atcctttctt cctattaatt ttgcaatttc
     3541 ataaagacag tatgataacc aataagtagt ttcaaccatt ctatacagat ccccgggttc
     3601 aactccaaat ttttcattta gatttgcttc gcttgtttca tccatccatt ctagcagaat
     3661 gatcatattt tttaatgaat agtcgtaatt tgagagccca tgagaaccca gttcatgttt
     3721 ttcaaacatt ctctcaaagt attctatttc attttgcctc agtgttaact ttggataaaa
     3781 atcataagag tcacatatcc aatgtaaata atttattcca tcatcatact tgttactatt
     3841 gtagaaatct agattcttct taaaatgaat accagttttt ggatcgatat ataacaagga
     3901 aatgcgttta ccaaatttag tagccataag taactctttc ctcatgataa tcaatccttc
     3961 gtcatgtaga taatgtagca gtgtgtcaat ttcaaagctg atagtttcat ttctatgata
     4021 ctttgagagg aatgtttcct caaaaaagta aagtaattca gattttaata ttttagatct
     4081 tgaagctatc actcccagaa catgcactcg tagtgcagtt tcattcatta attgagagac
     4141 aattggttct gggtccccta aaacaaaatg attgtataga tcttctgggt tggttctcga
     4201 atctgctatt atgatggctt ctccatattt atcatatgca ggccttccag cacgtccaca
     4261 taattgtttg tactgtaata cacttaatgg aacattacca ccgtattcat aatcgtatct
     4321 aaaaatactg gtgattacaa cacgtctggc aggtagattt actcccgcag ccagagttgg
     4381 tgttgcaaat agaatcttta ttatgccttt tctaaaggca tcttctacaa tttgtctact
     4441 ttttaatcct agacctgcat ggtgaaatcc tacacctttt gtaacagtat ttgaaagtgt
     4501 tctattaagc tctgtatcat ccccctgttt tagaatttct gcacctatct tttgtgctga
     4561 aagttttgaa gatttatcca atatttttgg tactatgtcc gaagtttttt tcgcaagcga
     4621 aacagtacgt ttgcgcgtct ctgcgaacac aagtgattgt cctccatcat tagtaattga
     4681 atccattgca agacttatta ttccactgct tgaattatca gcaactccaa tattatcaat
     4741 ttcaaaagtt gtaccattat tcatctcaac tttaccataa ttatacacgc cttctatcaa
     4801 ttcagtagga cgccatttgc tttgtattgg ttcacatttt aaccaatcag caatttcatc
     4861 tgaatttgaa attgtagcac ttattccaat tatttgaggt ctttgtggca ttagttttat
     4921 ttttgtcaat attatttcca gagttggacc tctttcacgt tctgtaagaa gatgtatttc
     4981 gtctataata aatagaccga catcaaaaat ccagtttgaa tcatgtctta agattgaatc
     5041 cagtttttca tttgtcagga tgatgatatc tttgtcaatc aattcggttc cagaagagtc
     5101 gtaatcgcct gtggagattg caatgtctat tttcctgttc ttaaaacaac tcaaatcttt
     5161 gattatctta aattcgttaa atttttctga ggccaatgct tttagtgggg taagatatac
     5221 tatttttttt ctcttggtta ggatgtttat cattcccatt aatccaatta gtgtttttcc
     5281 gcttgatgta ggagtcgtaa caagtatatt gttaccattc attacaccct ttgataatgc
     5341 aagttcttgt gggggatata acgaaccgta atttaataat cgtaaaagct cctgcaaata
     5401 ttccttcatt cgctgaattg aattaattca ctctaattaa tatattaata atattgagat
     5461 ttttaatgtg ttcgacgaac gagtacgctg taaccattga tgatgaattt tatacaaagg
     5521 tgttaagacg atattttact tcttatgcct ttgcataaaa tcctgctctt ctttcgtaaa
     5581 tttgtccgtt ctgcatggct tttcttatga aatctttggc ttcatcttct gtaaacttac
     5641 cagttttcac aagttcatca acaaaattct tttcttcgac atcgttctta tcctctccag
     5701 acaaaccgtt aaagacatca gtgaatgtct ttagttttga agtttcgcta agaggttttc
     5761 catgaagaac tcccaggtca acttttccag tattgacatc tatacctacg gtttctaaca
     5821 tttgagaaac gaggtatatt gctctctctg catctgccgc atctacacta tctttcaata
     5881 atagtctcgc tctagcagta gcaaggcgta ctagaccttc cagctgacga ggagttgctg
     5941 ttatcatgcc ttcggaatca acgtttctca tctgcaaata atattttctc aagatatcaa
     6001 tggcctcggg tgtgagtttt ggctcaattt gtttagcata ggctagatat ttgcggaata
     6061 gatcgatttc tatggcagac tgggctgcgt gctctatgtc tctatggatt tcaagtatat
     6121 gacttgcgat tcgattatct ctttcagtgt cagcgctatc tctgattacg tgaataatat
     6181 caaatcttgt tagtaacggt ataggaagtg gctctacgtt ttctgtaatg tttctaaatg
     6241 gatcgtattt accatattta ggattggctg ccgacaggat tgaagttctg gcattaaggg
     6301 ttgctactat tcctcctttt gcgaccgaac aagtctgttg ctccataact tcatgaagtg
     6361 cagatctgtc ttcggacttt atcttatcaa attcgtcaat acaattgtga atgtaaatta
     6421 gtgatgcttc ataattgtga tgttttccta cactgagatc atacacataa ccatcatatg
     6481 gaattctttc aacaagtaca accttttcga ttcctctttg tatcgaacct ttgtgatcaa
     6541 tttcgattgg cccttctctc tttgttttga tgctatgaga ttttattcct tcagcaaagc
     6601 gagttacatc acttcctgtg atctgtatta atggaaatcc cttacgagtc ttatgcagtt
     6661 ttgcatatac tcctaatcga cgtaataaat aaagcatgac tgccaactca tgttgagatg
     6721 tggaaggata catccttgct gcgactacct tgccatgaac gtgattaaaa tccccgtcag
     6781 tatcaaacac tccagctaga aatgcccata atgatttgtc cgaaagcagc aagacattgt
     6841 ttattgattg atttttaatt aagaatctag ttttcttgag tagaatcttg tctgctgtgt
     6901 atagctgaaa catgcgtgat accaagacgt attttccaat ggtgtgagtt cggtctcctt
     6961 tgttgtaaag cgagaaaaca ttggaatttt gctgtatgtt atatatgaca tcggaattta
     7021 cttttgattg gcttattgta atgctatagg gagttatatg accgtcgcca tagatacatc
     7081 ctataacata ggcatcttct tctgtgatat tcaatgtaca ggagggtttt tggactctaa
     7141 tgggtgaacg caagatatct ccaggactca cgtcttgggc ctgtacccat agatttttga
     7201 catgtgttga gcgcctgagt agatgttctg gtgtcacttt gagtgtcaaa cccgatgaga
     7261 aagttaactt gatgacatcg cctgtatgcc tttttctcat tatcgcaaat gcgttacctt
     7321 ccatatctac cctgtatttg ttatcataaa ttccgacggg gattagatct tttttggctt
     7381 ctcgaccaga ttttgatatg tagacttctc ctttcatgtc ttcccagagc tttccaacag
     7441 gaactagact atttccagtg tagatttctg tgtcctcggt catacaaacg aggccttgat
     7501 cacccaaaac tacagcgccc gcctcgagca tcataattcc ggatttatca cgaattactg
     7561 ctgctgttaa acctgcagca gtagtacctc ttcctgaggt gtatagacct cttggtgcta
     7621 tctttgcagc aaatttgagc atttcggatt tggcagtacc tgggtctcca actagaaaga
     7681 tgttgatatc tcctctacga tttgaaccat ctgctaattt ttttgttaca gatcctacaa
     7741 ttagtaaaag aatagattct ttgattactt cgtgtccata aatatgaggc gcaaatgatg
     7801 caactagttt gtcatatgca tctggcatat ctttaataga taagatccgt ttttcatctt
     7861 ctctacttat aaatattcta tcaagaattc tttcgtcttt actgtcaaca cttctctgat
     7921 ccttatttcc aaaaatcccg gcaagaaatt ctatattgtt accttccatg cggagtctga
     7981 acagacttgt ccttacttgt aatgactgtt cttgctcaat tctgactatg cctgttaata
     8041 aaaccctatc accaggtcgg cacctgtcga caagatcatc cattacagta acttctacat
     8101 aatgcggaag ttggcctgca ggcaagtctt ctggcagttc ttgaatccta actagctgaa
     8161 aatcagtaaa gtaactattc tctggatcca tttcgagttc tttttctgaa cactgagtac
     8221 accttgtggg tttctttagt gtcaaaccct taagcggggc ttcattaaga gtattacagt
     8281 tcagacatgc atatgcaatt tttttagcaa gtggtttaat ttcagaagtc ctgactacca
     8341 tgccaggaac gcttatcaac ttgttaatga catctgcatt tatttctctt agcccctttt
     8401 gaaccgaata atttccaatt cttactttta tcttatcttt aatttcctct gcatagtcat
     8461 aatgaatttc tctcaagatt gagtatacag ctttgttaaa agcatcaaac atgtcatcgg
     8521 gtgtatcagt gattaatttt gtcagttccg gcttatttct atccaagtcg atataatcaa
     8581 ctacgataaa ggtggtattt gatgccatca tgttgttaat tctatcaaaa tatttgtaat
     8641 tcccatccct gtccttatag gcgcgtaaaa atgattctaa ttcatctgat attgccgaag
     8701 tagtttgttg cttttgctct gtcattattt gtgcaacacc gattctttaa aggccaatga
     8761 agaagtgtga acaaaattat agagctgtct ttcctctgca gataattttg attctgtttc
     8821 tgctgaaagt gatgaagcag ctgcgagctt cacaattttt ccgagtcgag acatcacgaa
     8881 tgaatttaga gataccatta atgtttccct ttccttttca ctaagacttt caaggaagtc
     8941 atttacccgg atgtaaaaat ctacatctac actcgatata tcatgcggtt ttgctattcg
     9001 ttctctattc aatgcctttg aaacatagct tgatacttca taatcttgat tttcgattag
     9061 attccttttg gacaaaattc ttgtgagcca ccttggcaat ggtaaaatgt ctccttcctt
     9121 ggcatctatg tgaatatcat taattgatat tcttgcatcg gacttgaatg taattctaac
     9181 ctcctcaaga agatattcaa gtaggtatct gttctttaag ctatcaaata cgctctgagt
     9241 aagaaaggta gatgatgaca ttggggatat agtcttagaa attcagctaa ataagtctta
     9301 gaagtagccc gtaaaaaata cacctttaca gaccgattaa ataactgata attcgaactt
     9361 cttgatatgc cgcaagcaga ggcaaaaaac ttgtcagact tgatgtgggt agaaaaatac
     9421 agacctatta agttagatga tgttgtcaat caaaaagaaa tcgtagagag tctaaagaac
     9481 ctaatgaagc aacctgctga aatgccgcat ttgttattta caggtcctgc tggagttggc
     9541 aagactacta ctgcattatg tatgtcaaga caattactcg gagaagattg gaagagggat
     9601 acacttgaac tcaatgcctc ggatgaaaga ggaataaaga tggttcgaga aagggtcaag
     9661 gaatttgcct ccgtcttcaa aataagaaca agcgaaaaag aggaaagaaa atttagaatc
     9721 ataattttag atgaagccga tgaaatgaca tcagaggcac agacagcttt gcgaaggata
     9781 atcgaagaca gttctgaaac aacccgtttc gttataatat gtaattattt atcgcagatt
     9841 attgatccta ttcaaagtcg ttgtgctata ttcagattta agagaattga aaaagaaatc
     9901 atagagaatc atctaaaatc attatgtaaa aaggagggaa taaagtacga cgataaggca
     9961 atttcacaaa tttttgaatc tacaaatggt gatctacgtc attcgataaa cattttacaa
    10021 actgcctccg caatgggatc ggtaagtgta tcaaacgtcc aggcatcatt aggacttagt
    10081 ggaaaatcaa tggtaagtga aataatcaag atggcaatgt ctggtaaatt taatgatgct
    10141 cggatcaagt tacttgaatt gactgcagtc tatggaatgt ctgaattcga ttttttgaaa
    10201 tatgcgtatg aggcggtata ttctttaaaa ttatctcacc ccgaagactt tgcttctcta
    10261 atagctgaat atgattatcg tttgactcat ggatcacatc ctgaaatcca attaacagct
    10321 tttttggctc aattgtcacg aattggtacg aagcagtaat gtgagctcaa gattacagct
    10381 gacttttatt tatcaattta gaattaggag atccaataac ctggatcaaa aataatctag
    10441 tgccaagaat taataatctt cctcaaat
//
LOCUS       DASPFX010000084         3927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2038692, whole genome shotgun sequence.
ACCESSION   DASPFX010000084 DASPFX010000000
VERSION     DASPFX010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3927
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2038692"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(561..3317)
                     /locus_tag="VD694_01930"
     CDS             complement(561..3317)
                     /locus_tag="VD694_01930"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HXW11490.1"
                     /translation="MNLIDEQILESFRHEGFQNLTKIQKISYPVISRMQNCLLVAPTG
                     SGKTEASLIPILSILDSERLRNIDFVQDNAIFVLYITPLRALNNDVHRRIIDYAKRRN
                     LDAQIRHGDTSRIAKQKMVKKPPHILITTPESLGIILTQEKFKAFLKHLRWVIIDEVH
                     ELIGNERGTHLTISLERLQNLSSHNLVRIGLSATIGNLKDAANFISGTNRKCSILVDN
                     TIRNYDIDVKYLKGSIGKAANLVFNYLNENKITGSVLLFTNTRDEAEYIGTTIRNQNK
                     IPIEVHHGSLSRETREETEDKLRQGLGGIVVCTSSLELGLDIGSVELVIHYGSSKQVS
                     KLVQRIGRSRHANYKSARGLIIANSGDDELECLSIINRMKNRSIEIQNTHTNSLDVVA
                     HHLVGFVMSTSEPKNLGEVYQIITGAYPFRELAFSDLEQCAVLLDRFRIIKYDPINQT
                     YARRIKSYKYYFENISTIPNIVKFEVIDVIRKKRIGTLDQQFIGEFGERGNVFILKGT
                     QWRIVSVDENKLQVNVEQVFGSPINIPHWVGEMIPVDYETAVQVGELRNKVLVDNNLK
                     IESDIRNTLRKIPVVPDARNIVIENVFSKNALVIHSTFGTKINNTLSSLFSTFLASYV
                     GHLVETKSDPYRILLSSSVRLSKGNIEKILYDEYDVETILITSLTNTYNLNWRVWIVS
                     KRFGLVDKNAIYDKRMARFIYDRYSKTPISKESLRELIHDKFDVQSTQEILQKIRSKE
                     ISIHWLDLSAFSPLANSIIEHHTKSSSSPLSIELGVLELIKERLEKTKHRLICIRCGK
                     WERLVETREIVDSISCKKCGSRLITTTFSSDYELSKIILNKLKGSEINSEQNHKFERA
                     WKTASLINNFGKKAITVLSGYGIGVETAARILRNYVDDENLYKNIYDAERQYVTNRGF
                     WNDK"
     gene            complement(3318..3446)
                     /locus_tag="VD694_01935"
     CDS             complement(3318..3446)
                     /locus_tag="VD694_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11491.1"
                     /translation="MNFDTLVQIAVGLFIAGLFITILYEKMNVKSSQDPEAEKSRS"
     gene            3488..>3927
                     /locus_tag="VD694_01940"
     CDS             3488..>3927
                     /locus_tag="VD694_01940"
                     /inference="COORDINATES: protein motif:HMM:NF017380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF763 domain-containing protein"
                     /protein_id="HXW11492.1"
                     /translation="MKYPRNFGYHSTLSYYKIVGAVFYLELINRSSITLPLHHGHPPQ
                     YLLARMKKLASSISKILVEEHGTREFLKRLADPLWFQSFGCVLGFDWHSSGLTTVVTG
                     VLQRSVNLEDHGIMIAGGKGKKSISTRGQIPNLATIANMNGKRIS"
BASE COUNT         1181 a          745 c          629 g         1372 t
ORIGIN      
        1 cctggacttt atggccgcag cccagacaga tatcgcccca ttccatgcta tattattgac
       61 aaattagttt attacagttt aagaattgag tcatatttgt attgaactta tcaacggata
      121 tgcagaagcg taactagtag aatattagaa tagagaaagg cgaattatgt atctttcttc
      181 tcaaccactt atataaaagc acccatcagt tcctacgctc taaacacaag gcaactgatg
      241 gggttggttg gttttttctt gttcattgtt cagcccgaac cctatcaatt gctttacaaa
      301 ctattttaaa tttattggta caagcatcaa attaaaaatt tatgtatgcc tagccaactt
      361 ttgatttcta cctagttgaa atgaaaattg taacttgtgt caaaaaagga tcttgattgt
      421 tactatctaa caatatgatt cctgttaagt gaatttttta ttcagccact aaaaaaaatc
      481 acaaatacct catagcaggt atcaaaaagg catatacaag gatagaaatt ttctaatatc
      541 taatttccat tttttactta ttatttatcg ttccagaaac ctctattagt aacatattgt
      601 ctttcggcat catatatatt cttgtacaaa ttttcatcgt ctacataatt gcgtaatatt
      661 cgtgcagctg tttcgacacc gatcccatac cctgatagta cagttattgc cttctttcca
      721 aaattattta ttaacgatgc agtcttccac gccctctcaa atttgtgatt ctgttcagaa
      781 ttgatttcag agccttttaa tttgttcaag attattttgg aaagttcata atcagaagaa
      841 aaggtggttg taataagtct cgagccacat tttttgcaag atatagaatc tactatctcc
      901 cgcgtttcaa ccaatctttc ccatttacca caacgaatac atatcaatcg atgtttggtc
      961 ttttcaagtc tttctttaat aagttctaaa actccaagtt caatactcaa cggtgaagac
     1021 gatgatttag tatgatgctc aatgatgcta ttagccaaag gtgaaaaagc tgacaagtct
     1081 aaccaatgaa ttgatatttc cttgctcctt atcttttgca atatctcttg tgttgattgc
     1141 acatcgaatt tatcatgaat caactccctt agtgattctt tgcttatcgg cgttttagaa
     1201 tatctatcat aaataaatct ggccattcgc ttgtcgtata ttgcgttctt atcaacaagt
     1261 ccaaatctct tagatactat ccacaccctc caattcaaat tatatgtatt agttaaagat
     1321 gtaattagta ttgtttcaac gtcatattca tcataaagaa ttttttcaat atttcctttt
     1381 gacaatctga cagaagaact taatagaatt ctatatgggt ctgactttgt ttcaaccaaa
     1441 tgtcctacat atgatgctaa aaatgttgaa aatagtgatg acaatgtgtt atttattttg
     1501 gtaccaaaag ttgaatgaat tacaagcgcg ttttttgaaa acacgttttc tatgactatg
     1561 tttctagcat ccggaactac aggaatcttt cgtagtgtgt ttcttatgtc tgattcaatc
     1621 tttagattat tgtccacaag aaccttattt ctgagctcac caacttgtac tgcagtttca
     1681 taatcaacgg ggatcatctc accgacccaa tgagggatat ttattggaga tccaaaaact
     1741 tgttcgacat tgacctgaag tttattttca tcgacactta caattctcca ctgagtacct
     1801 ttaagaataa agacgttacc tctttcacca aattcgccta taaactgttg atccaatgtt
     1861 cctattctct ttttccttat gacgtcaatt acttcgaact ttactatgtt gggtatagta
     1921 gaaatatttt caaaatagta cttgtatgat tttattcttc gagcatatgt ctgattaatg
     1981 gggtcatact ttataatcct gaatctatct aacaagaccg cacattgttc caagtcggaa
     2041 aaagcaagtt ctctaaaagg atatgctcct gtaatgattt ggtaaacttc acctaaattt
     2101 ttgggttctg atgttgacat cacaaaccct actaaatgat gagctaccac atccaaagag
     2161 tttgtatgag tattttgtat ttcaattgac ctgtttttca ttctattaat tatggacaag
     2221 cattctaact catcatctcc actgtttgct ataatcagac ctcttgcgga tttataattt
     2281 gcatgtctac ttcttccaat cctctgcact aatttcgaaa cctgttttga ggatccatag
     2341 tgaattacta gctctactga tccaatatcc aaacctaact ctaatgaaga agtgcaaaca
     2401 acaataccgc caagaccctg cctaagttta tcttcagttt cctcacgtgt ttcccttgaa
     2461 agtgatccat ggtgaacttc gattgggatc ttgttttgat tcctaattgt agttccaatg
     2521 tactccgcct catctctggt atttgtgaaa agtaatactg atccagtaat cttgttctca
     2581 tttaaataat taaagacaag gttggccgct ttacctatcg aaccctttag gtactttaca
     2641 tcaatgtcat aatttctgat agtattgtct acaagaatgg aacattttct gttagtcccg
     2701 ctaataaaat ttgcagcatc ctttaaattt ccgattgttg cggacaaacc tattcttaca
     2761 agattgtggg aactcaggtt ttgtaaccgc tcaagactga tagtaaggtg agtgcctctt
     2821 tcattcccaa tgagctcatg aacttcatct attatgaccc atcttaggtg tttcaagaac
     2881 gctttgaatt tttcttgtgt aagtattatt ccgagagatt caggtgtagt tatgagaata
     2941 tggggaggtt tttttaccat tttctgtttt gctattcttg acgtatcacc gtgtcttatc
     3001 tgcgcatcaa ggtttctcct ttttgcataa tcaattattc tcctatgaac gtcattattc
     3061 aatgctctta gaggtgtgat atacagtaca aaaatcgcat tatcttgtac aaaatcaata
     3121 tttctcaatc tctcgctatc aaggatggaa agaataggaa tcaaggaggc ctccgtcttg
     3181 ccagatcctg taggagcaac tagaaggcaa ttttgcatcc tggaaataac tggataagaa
     3241 atcttttgaa tttttgtgag attctggaat ccttcatgcc taaaggattc taagatctgt
     3301 tcatcaatta gattcattca acttcttgat ttttctgctt caggatcctg acttgatttg
     3361 acgttcattt tctcgtataa tatggttatg aagagtccgg caataaacag gccgactgca
     3421 atttgaacca gggtatcaaa gttcatggat aattattcta aacatacgtt tctcatttat
     3481 aaatcgattg aaatatccaa gaaattttgg ttaccatagc accctctcat attataaaat
     3541 agttggagca gtattctatt tggaattgat aaacaggtca tccataactc ttccattaca
     3601 tcatggacat cctcctcagt acttgcttgc tcgaatgaaa aagcttgctt cctcgatttc
     3661 aaaaatactt gttgaagaac atggaacgag agaatttttg aaaagattgg cagatccgtt
     3721 atggttccaa tcatttggat gcgtgttagg atttgactgg cactcttctg gattgacgac
     3781 agttgtaaca ggcgtactac aacgatccgt taacctggag gatcatggaa taatgattgc
     3841 tggtggtaaa ggaaaaaaat caatatctac aaggggccaa attccaaatt tggcaacaat
     3901 tgcaaatatg aatggcaaaa gaatatc
//
LOCUS       DASPFX010000085         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_41920, whole genome shotgun sequence.
ACCESSION   DASPFX010000085 DASPFX010000000
VERSION     DASPFX010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41920"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..608)
                     /locus_tag="VD694_01945"
     CDS             complement(54..608)
                     /locus_tag="VD694_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HXW11493.1"
                     /translation="MVKTQSTQKLVSGSQAPNFSLKGVDNKLYTLSEIKSKSLLIVFM
                     CNHCPYVKARISDLVSLQSKFDTSDLQIIGINSNDPKYEGEGFDNMIYFAKEHSLNFP
                     YLIDETQNVAKEFGAVCTPDPFLFDESKNLVFHGKINNALEPDAIPTIHTMEENVRKV
                     VEGKKNDIQKDFDPSIGCSIKWIN"
     gene            complement(674..2074)
                     /locus_tag="VD694_01950"
     CDS             complement(674..2074)
                     /locus_tag="VD694_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HXW11494.1"
                     /translation="MQSGGTKSVPRNSNLINANREPIESLVRKFRTGEYLVAVYGLGH
                     VGAPLASVWLRRGIRVIGIDKSKKVIENTRNGITHIPEPLVNESFSQGLNEDRFSVYE
                     DPVKASVDSKLKMICVPVLVKKNKPDLSTIKEVIVSIGKGLKKDDIVSIHPSLPPLTT
                     EKVLVPLLEKSCGLESGTDFSVIYNPERIYEGQAIFDIEEGHPGIVSADDNYSLQIAD
                     ALFSLLYRKGIVKILGIKVAEAEKLFEGVYRDVNISLANELARLCDRLNIDFWEAKKA
                     ANSQSFCHIHDPGIGVGGACIPIYPQFIIDIGLRNKINCKITKTARAINNEMPKYSLN
                     KALKLIKGRYSRKSKITILGLAFRGGVSDTRLSPTFDLLRELAKLKIKDVIVHDPLVT
                     DSESIGKFKDARLVSNLKDAISGRDLIILATNHKEYSNIDSSILGNTPIYDGRGVLYP
                     KMFEKDLYGGIGRPSI"
BASE COUNT          750 a          425 c          383 g          821 t
ORIGIN      
        1 cctgaaaagt ttgggttagc ccttgtcaac aatacacaga tagaaagtat attttaatta
       61 atccatttta ttgaacaacc aattgaggga tcaaaatctt tttgaatatc attcttttta
      121 ccttctacta ctttccgaac attttcttcc atggtatgaa tagttgggat agcgtctggt
      181 tctaaagcgt tatttatttt tccatgaaaa actaagttct ttgattcatc aaataggaac
      241 gggtccggtg tgcaaacagc accaaattcc ttagccacgt tttgggtctc gtctatcaaa
      301 tacgggaaat ttagtgaatg ttccttagca aaatatatca tattgtcaaa tccttcgcct
      361 tcatattttg gatcattact atttattcca attatttgaa gatcagaagt gtcaaatttt
      421 gattgtaatg ataccaagtc agaaatccta gccttaacat agggacagtg attacacata
      481 aatacaatta gtaatgattt agatttaatt tcacttaagg tatagagttt gttgtctacc
      541 ccttttaaag aaaaatttgg agcttgcgat cctgaaacaa gtttttgagt ggattgtgtc
      601 ttcaccataa ccacattggt taataaaata aataaaaatg ttattttaat gtgaattttg
      661 aataattaag aagtcaaatg gatggtctac ctatgcctcc atagaggtct ttttcaaaca
      721 tctttggata caaaacccca cgaccgtcat agattggagt attgcctaaa attgaagagt
      781 caatattaga atactcctta tgattagtag ccaagatgat tagatccctt ccagaaatcg
      841 catcttttaa gttcgatact agccttgcat ctttaaattt cccaattgac tcagaatcag
      901 ttactaatgg gtcatgtacg atcacatcct tgatttttaa tttcgccagt tctctaagca
      961 agtcaaaggt tggagacaaa cgagtatctg aaaccccgcc acgaaaagca aggcccaaaa
     1021 ttgttatttt agattttctc gaataccgtc ctttaatcag ttttagggct ttattcaatg
     1081 aatactttgg catttcatta ttaattgctc tagcggtttt tgtaattttg caatttattt
     1141 tatttcttaa ccctatatct ataatgaatt gtggatatat cggtatacat gcaccaccta
     1201 ctccgatacc aggatcatga atatgacaga aactttgaga gttggccgcc ttcttggcct
     1261 cccaaaagtc tatattcaat cggtcgcata acctggccaa ttcgttagcc aaagaaatgt
     1321 ttacatctct ataaactccc tcaaacaact tttctgcttc tgcaacttta atcccaagga
     1381 tctttactat accctttctg tacaaaagag aaaacaaggc atctgctatt tgtaaagagt
     1441 aattgtcgtc tgcagataca attccaggat gaccttcttc tatatcaaat atggcttgtc
     1501 cctcatagat acgttcggga ttatatataa cagaaaaatc agttcctgat tccaatccgc
     1561 aagatttttc aagcaaaggc accaagactt tctctgtagt taatggagga agagaaggat
     1621 gaattgatac aatgtcatct ttttttaatc ccttaccaat tgagactata acctctttaa
     1681 ttgtcgacaa gtctggttta ttttttttta ctagtactgg aacacatatc atctttaatt
     1741 tggaatctac ggatgctttt actggatcct catatactga gaaccgatcc tcattcagac
     1801 cttgagaaaa ggattcgtta acgagcggtt cgggtatatg agtaatccca tttcttgtat
     1861 tttcaataac tttttttgat ttgtctatgc caattactct tatacctctt ctgagccaaa
     1921 ctgaagcaag tggagcacct acatgaccga gtccgtaaac agctacgaga tattcaccgg
     1981 ttcgaaactt tctaacgaga ctttctattg gttccctatt tgcattgatt agattagaat
     2041 tacgagggac agacttagtt cctcctgatt gcacagattg aatattttat taactagtta
     2101 tatgtttata tcacatttta aaaaataaaa tatacaatcg caaacatcac tcaatggagg
     2161 tacattttta gatgaataaa agaatattta cacatgtttt atttattatt agtatagata
     2221 gataatgttg ttctctgtgt atgagcttaa tataggagga tctgaatggt ttataattat
     2281 aattgtcatt gtaatattta tttttccgac taaaatcaca ggtttttcta gatcaattgg
     2341 aagaatgatt ggggaatatg aaaaagcaag aaccaaaat
//
LOCUS       DASPFX010000086         2750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_716259, whole genome shotgun sequence.
ACCESSION   DASPFX010000086 DASPFX010000000
VERSION     DASPFX010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_716259"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..631
                     /locus_tag="VD694_01955"
     CDS             155..631
                     /locus_tag="VD694_01955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11495.1"
                     /translation="MSEDVQWLNGEGQNYRTKSEKKVNSIENGGGIEYHQQYQTILNL
                     YNSGIPTYIISLQLDMNEDDVRKIIQSTSNNTEPLLASPFSISLLENKFDNDNLTPSL
                     ENTDNMDIAIKNAQVRMWKALIGPMRSSELLQNQRSLWSHSILISSIRLNFQFPYH"
     gene            692..1000
                     /locus_tag="VD694_01960"
     CDS             692..1000
                     /locus_tag="VD694_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11496.1"
                     /translation="MRIDIDIGENVVIQDGWDLHRLPQQNNTAIIREPHFDIIGYSTN
                     IAVKMTGLAGANKIVIGQSAYDILDHEKSSFKLLDVNPEVWKYIDDRTNTLYQVYQSI
                     "
     gene            1519..1653
                     /locus_tag="VD694_01965"
     CDS             1519..1653
                     /locus_tag="VD694_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11497.1"
                     /translation="MSSSSEPPMCEECGAVFVTIEELHEHWEAESEDKKLRHLGLDDG
                     "
     gene            complement(2006..>2750)
                     /locus_tag="VD694_01970"
     CDS             complement(2006..>2750)
                     /locus_tag="VD694_01970"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HXW11498.1"
                     /translation="KRSNKRHSSKVMLLYHGAEPATSINGISKKDARTRFPSLPQPVT
                     GRIALAFGFMTVAKGWDIIEKMRVPDNWTIVINSSVNHTTGERIRLDNLTNAHGVNEN
                     HRIINLSQDYLSEEELSALFIASDAVLLPYKITSGSGVMFDALGHGIPFIASDLPFFK
                     EFASKGLGITTKRTPNTFADALLELDKNYDKYKNAIEGFKKYLRWDIVARNHTELYNN
                     ISSSTKMLTGNEPHITVTKSIADPTSAAS"
BASE COUNT          899 a          476 c          535 g          840 t
ORIGIN      
        1 taccttattt tggatttata gttattttaa ggttacccta gagtaataac cttttactac
       61 caggctactc aaatactcat gtaggtattt tttgattaat attgtgattg aataaattat
      121 atagatgaat agtaatagtc aaaggtaaac agatatgagt gaagatgtgc aatggttaaa
      181 tggggaagga cagaactatc gtacgaaaag cgaaaagaaa gttaattcta ttgaaaacgg
      241 cggtggtatt gaatatcatc aacaatacca gacaatattg aatttataca attccgggat
      301 tccaacttat attatatcac ttcaattaga tatgaatgag gacgatgttc gcaaaatcat
      361 ccagtccact tcaaataata ccgaaccgtt attagcatcc ccattttcta tatcattatt
      421 agaaaataaa tttgataacg ataatttaac accatccctt gagaatacag acaatatgga
      481 tatagcgata aagaatgctc aagtaaggat gtggaaggct ctgatcggac caatgaggtc
      541 ctcagagctt ttgcaaaatc aaaggtcact ctggtcacac tcaatattga tctcgtcgat
      601 tcgactgaac tttcaatttc cttaccatta gagaggctct ctaccatact ttaatccgat
      661 tcttaatcaa tatggatatc ccgaaatgtc tgtgagaata gatatagata tcggtgaaaa
      721 tgtagtaatt caggatggat gggatctcca tagattgccg caacaaaata atacagcaat
      781 aattagagaa ccacactttg atatcatagg ctatagtacc aatattgcag taaagatgac
      841 gggacttgcc ggtgccaata agatcgtcat tggtcaatcc gcatatgata tcttagatca
      901 tgaaaagtct tcttttaagt tgttagatgt taatcccgaa gtttggaaat atatagatga
      961 taggaccaat acgctatacc aagtatatca gagtatttga ttcgctggat ataaaacagt
     1021 cattcacgcc ggtgagcatt ataagctcaa aaaatactga gaagagtaat aatagaagct
     1081 caacaagatg aagcatgagt agttgaagag caaataacaa tcatagcaag ggcatatgga
     1141 gtcaggcagg caaaggtgta gcaggcacaa ggagaagctc aagatattat catgatagac
     1201 cagcagctaa gaaaaaccct gagttactta ggacggctca acacacagaa gtggaactga
     1261 ctgcttccgt tggtggtagg atgagaagga aaaggattag agacagatgc taaacaaaat
     1321 atggtctatg atgatgagat atacggcccg ttcataagta ttcccactgg aaggagtata
     1381 agcaatctaa cattagttcg acaattataa ttcgatctat ataaattgcc cagaaatccc
     1441 attgcaattc tatcatctga tcacacagga cgtggaagat gaaatttaaa tatgatagtt
     1501 gattattact tatagactat gtcgtcatca agcgaacctc caatgtgcga agagtgtgga
     1561 gcagtatttg ttaccataga agaacttcat gaacattggg aagcagaaag tgaagacaaa
     1621 aaattacgac atttgggtct tgatgatggt tagattagct attgttttct cggagtttga
     1681 aatcacataa atctacctct tccatttttt gcgaacacta atagtcaaaa tatgttattc
     1741 tggagtgact ggttaaacct tcctgcctac tgtagacagg aacatcattg cggatatgga
     1801 tttccctaaa atctttgact acagagttga cagaaatgct cctttaccca tagaagatcc
     1861 tgtagagaga ttgagcaatg aagagctagt gtaaacgcat aatcgtaaga aaatgttaat
     1921 ccttcatttt attttttgtt agtataatat tgcaccaata acgctcctac gtatctatgt
     1981 ttaacctagc tgaaaactga atggcttagg atgctgctga agttgggtct gctatactct
     2041 tcgtaactgt aatatggggt tcgttaccag taagcatttt agtagaacta gaaatattat
     2101 tgtataactc ggtatgattt cttgctacta tatcccatct taagtatttc ttgaaacctt
     2161 cgatggcatt tttgtattta tcataattct tatccagctc caaaagtgca tcagcaaatg
     2221 tatttggtgt tctttttgtt gttattccta gaccctttga tgcaaattct ttaaagaaag
     2281 gcaggtctga ggcgatgaat ggaattccat gccctagggc atcaaacatg acacctgatc
     2341 cagaagttat cttataaggg agaagaactg catctgaggc gatgaagaga gctgaaagtt
     2401 cttcttctga gagataatcc tggctaaggt ttattattct gtgattctca tttacgccat
     2461 gtgcattcgt caggttgtct aatcgaatcc tttcaccagt agtatgattc actgacgaat
     2521 tgattacaat tgtccaatta tccggtactc tcattttttc tattatatcc catcccttag
     2581 cgacagtcat gaagccgaat gctaaggcta ttctaccggt gactggttgt ggaagagaag
     2641 ggaatctagt tctcgcgtct ttcttactaa ttccattaat ggaagttgca ggttctgcac
     2701 catgatataa taacatcact ttactgctgt gccttttatt gcttctcttc
//
LOCUS       DASPFX010000087         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_898226, whole genome shotgun sequence.
ACCESSION   DASPFX010000087 DASPFX010000000
VERSION     DASPFX010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_898226"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..1605)
                     /locus_tag="VD694_01975"
     CDS             complement(13..1605)
                     /locus_tag="VD694_01975"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SagB/ThcOx family dehydrogenase"
                     /protein_id="HXW11499.1"
                     /translation="MNEEIKYALEYHQETKHSQMSLRLSSHYLDWDNKPKSFKFYTNI
                     PSTPLPADFPLPSRNVITMKETDQITALENPKINTELLSSLLFFSSGITRQIKSPHGK
                     YYMRAAPATGALYPIEVYIVSENISGLQAGVYHFCPGEFSLTRLREGDYRRFLSEAAG
                     FERAITNSPFTIILSSIAWRNAWKYHARSYRHWFWDSGVIVANLIATATSFGLNTKLI
                     TGYIDKFVNDLLILEENKEASIVLVPIGIGLSKQEPNKIQYPSRFIPDIVPISSGKEV
                     EYNQIWKLHNASSLNSTDEVSRWTHSIKLMQEIREGKNDYVKSFSKNIEPIFNNTQSL
                     SDVILLRGSTRKFSREPITFEQLSSILYGLGGPTPSDFGEKKSFIDIYFIANDVINIQ
                     KGAYFFDRSNNTINLLKANIRRDISGYLCLEQTLFSDASVVFYIMSNIKSVLDKLGNR
                     GYRLCQFEAGILAGRIYLASYNQKIGASGSTFYDDAVSDFFSPHAKGKDAMIAVGIGI
                     PDYKSKPGRVLAGKFSRDELLS"
     gene            1800..1994
                     /locus_tag="VD694_01980"
     CDS             1800..1994
                     /locus_tag="VD694_01980"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HXW11500.1"
                     /translation="MALSINCKDAGDPVCTHTMYGETEEELLQNAKEHGIKVHGYTEE
                     QWNEEISKNLEHFRKIIKKT"
BASE COUNT          725 a          388 c          372 g          716 t
ORIGIN      
        1 tttgaaattg attcatgata ataattcatc cctcgagaac ttgccagcta gaactctacc
       61 gggttttgat ttgtaatctg gaatacctat tccaacggca atcatcgcat ccttgccctt
      121 cgcatgaggt gaaaaaaaat ctgatacggc atcatcataa aaagtagaac ctgaagcacc
      181 aattttttga ttataagaag ccaaataaat tctcccagct aatatacctg cttcaaattg
      241 acataaccta tatcctctat tccctaactt atccaatacc gatttgatgt tggacattat
      301 gtaaaataca acacttgcat cactgaacag agtttgttct aggcacaagt atcccgagat
      361 atctcttcga atgtttgctt ttaagagatt aatggtatta ttacttcgat caaaaaaata
      421 tgctcctttc tgtatgttaa ttacatcatt tgcaataaaa tagatatcta tgaaagattt
      481 tttttcacca aagtccgatg gtgtggggcc ccctaaacca tataggatac ttgatagttg
      541 ttcaaatgta ataggctctc tcgaaaattt tctggtagaa cccctcaaga gtatgacatc
      601 agagagtgat tgtgtattgt tgaaaattgg ttctatattt tttgaaaatg atttcacata
      661 gtcatttttt ccttctctaa tttcttgcat taattttatt gagtgagtcc atcgagacac
      721 ttcatcagtt gaattcagcg acgatgcatt atgtaatttc cagatctggt tatactcaac
      781 ttctttccca cttgaaatag gaacaatatc tggaataaat ctagaaggat attgaatctt
      841 gttaggttct tgtttagaca aaccaatacc aattggtacc agaactatcg atgcttcctt
      901 gttctcttca agaattaata aatcatttac aaacttgtct atatacccag taatcaattt
      961 ggtattcaaa ccaaaggaag ttgctgtggc aatcagattc gcaacaatta cacctgaatc
     1021 ccagaaccaa tgacggtacg aacgagcgtg atatttccaa gcatttcgcc aggctataga
     1081 acttagtata attgtgaaag gcgaattcgt tattgcccgt tcaaatcccg cagcttcaga
     1141 caagaaccgt ctataatcac cttctctcaa tctagttaaa gagaactcgc cgggacagaa
     1201 atgatataca cctgcttgta atccgctaat gttttctgat actatgtaga cttcaattgg
     1261 atataatgca ccagtagccg gtgcagcgcg catataatat ttcccatgcg gagacttgat
     1321 ttgtcttgtt attcctgaag aaaagaaaag taaagacgat agtagttcgg tatttatctt
     1381 tggattttct aaagcagtga tttgatctgt ctctttcatg gtaattacat tacgactcgg
     1441 taatggaaaa tcagcaggca ggggagtaga tggtatattg gtataaaatt taaatgactt
     1501 tggtttatta tcccaatcta ggtaatggct tgataatcta agactcattt gagaatgctt
     1561 tgtttcttga tgatattcta aagcatattt gatttcttca ttcaatttaa tttagttaat
     1621 taagacaaac gtattataat aattgatcct gagcatagat cggttggttg aagcttaacc
     1681 aaacaaagtt ccacaatttt cccttaccca taaattccat cttaaatgtt gccagcctcc
     1741 caatttctag tgatagtaat ttgagaaaat ttaaatagtt tataagaaca ttattttcaa
     1801 tggctctctc aataaattgt aaagatgccg gcgatccggt gtgcactcac acgatgtacg
     1861 gagaaacaga agaagaattg ctccagaatg caaaagaaca cggaattaag gttcacggat
     1921 acacagaaga acaatggaat gaggaaattt caaagaattt agagcatttt agaaaaatca
     1981 taaagaaaac ttgaatagac attctatatt aacaactagt attcaagcga aaacattttt
     2041 ttgtcgttga atatagagta acatctctag attggtcggt cattgagaaa ttatatcttg
     2101 gtttagtaaa acaattgaag ctgataatac ccattataca tccaatttca ggtaatattg
     2161 cttgaatttt gacactagtt attagtaatc gaaagagtta a
//
LOCUS       DASPFX010000088         3299 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1895415, whole genome shotgun sequence.
ACCESSION   DASPFX010000088 DASPFX010000000
VERSION     DASPFX010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1895415"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VD694_01985"
     CDS             complement(<1..240)
                     /locus_tag="VD694_01985"
                     /inference="COORDINATES: protein motif:HMM:NF013104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11501.1"
                     /translation="MMKTRCLARTPVCKNFYTWDECIMEVPIDTGDTAWMMVATGLVL
                     LMTPALGFFEAGLIRGKNSLSVMMQTFSGLAILSVL"
     gene            794..1345
                     /locus_tag="VD694_01990"
     CDS             794..1345
                     /locus_tag="VD694_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HXW11502.1"
                     /translation="MVRTESINTLEIGQPAPHFKLRGTDGKTYSLIDFSESKTLLVVF
                     ICNHCPYVKARIGDLVQLQSKFSTDELATIGINSNDPNYENEGFDNMIKFGKEYKLNF
                     PYLIDETQTIARSYGAVCTPDPFLFDDKRKLAYHGRINDAVDPQMSPKIPILENNVMR
                     LISGNAIEKNFFPSIGCSIKWIS"
     gene            complement(1412..3289)
                     /locus_tag="VD694_01995"
     CDS             complement(1412..3289)
                     /locus_tag="VD694_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HXW11503.1"
                     /translation="MENYDVAVVGGGTSGLTALRQLSNLGKQAILLEAGSTTGTKNVS
                     GGILYSKKPKNGRVYNIEDVFGREFIDEAPFERAITQYILHATSKDKLYSIDLTPVHE
                     YQINYAYSVLLSKLVPWLAKEASDMSEKMGGGIISGVHVRSIRWETGSNDTVIETDEL
                     EPFRVRAVIAADGTNSELADVTQSRNKFSSEQLYQGVKVVIKLPETILEDRFSITSEE
                     GAAHLFAGDVTMNHIGGGFLYTNRDTISLGAVYHMDSMMENPVEPSRLIDALIRNQFV
                     AEFIKDRVPTRKANQALISKDEEIRQHFMAVKLLKTWNNLRSDYYSRDGIKRLIESGK
                     YKTREEIEGRINNLEKELVEKYNCEFGDNYVELEYSARLIPDGKRCRMKTPYYKNVLF
                     VGDAAGRGVFIGPRIEGLNVGIDDAVRAANAVARSLDRNNFDEQYLGSFYTKSVEESP
                     YTRDMKEIDKEYLKIFLDCSKHIPKDIVGSRYGMIFKLMSSSTLRGIAVGFANMLGFD
                     RLLPLVESVDTYVNVPVEIAERLGRHVDSKYIPNTPSLQERIAKLDYDDDSVPHIQVT
                     KPRSEFMQKMVSLCPTRCYSSENGDVILQHEGCIECGTCAYDTLWRHPRGAKGVSYKY
                     G"
BASE COUNT          972 a          731 c          573 g         1023 t
ORIGIN      
        1 caatacagaa agaattgcca ggcctgaaaa agtttgcatc atcacagata aggaattctt
       61 gcctctgatg agtcccgctt caaagaagcc cagtgcgggt gtcataagga gaaccaggcc
      121 cgtagcaacc atcatccaag cagtatcacc agtatctatc ggcacttcca tgatacattc
      181 gtcccaagta taaaaatttt tacaaacagg cgttctagcc agacaccgag ttttcatcat
      241 tagtaatacc aaccttgaaa tccattagaa tatagtggtg attgtttcct ctcttttgaa
      301 agaaatttga acttaggtgc aacagataag aaatacagat atgcaataaa aaaagcggag
      361 acatcggatg gagaaatatt ttgatcttta ctggcaactg gtaatttgaa tattaataat
      421 atgtcgatcc atttcacatt cagattatac aagccactct catagaaatt aaatgtacat
      481 tctagcaacg atcggacctg cttctccctt cattcagtag caattcatat aaggatggtg
      541 actgtaatgc gatacattac gaacctaatg tacctaattc agactctaat cagtttagac
      601 agaatccaac ttcaaccgcg tcaatactga tctataaggg acctatcaaa atacaacgta
      661 gaaagtaaag aactcttttc attttaactt agtgattcag tatttgtatt ttaatttgtt
      721 atagacatct tataaacgta gggtacaata ataaagaaac attttataga gatatggaac
      781 aatattacct agaatggtta gaacagaatc cataaacacc cttgagatcg gccaacctgc
      841 tccacatttt aaattgcggg gaactgacgg aaagacatac tctttaatag atttttcgga
      901 gagcaaaaca ttgttggtcg tcttcatttg taaccattgc ccttatgtaa aagctaggat
      961 tggcgacctt gttcagctcc aatccaagtt ttccactgat gaattggcaa caataggtat
     1021 taatagtaac gatcccaatt atgagaacga aggctttgat aacatgatca aatttggaaa
     1081 agagtacaaa cttaatttcc catatttaat tgacgaaact caaactatag cgagatcgta
     1141 tggtgcagtt tgtacgccag atccatttct ttttgatgac aagcgtaaac ttgcatatca
     1201 tggacgtata aatgatgcag tcgatccgca gatgagtcct aagattccca tcctagagaa
     1261 taatgttatg agacttattt caggaaatgc catcgaaaaa aacttttttc cttcaatagg
     1321 atgttccatt aagtggatta gctaatagta ttaaaccctg atggattgat ttatctcctt
     1381 tcttggataa ggactggaac taaatatttc cctacccata cttatatgag acgcccttag
     1441 caccacgagg atgcctccat aaggtatcat atgcacaagt accacactct atgcacccct
     1501 cgtgttgcaa tattacatct ccattttcgc tactgtagca gcgcgtagga cataaagata
     1561 ccatcttttg catgaattca cttctaggtt ttgtaacctg gatatgcggc actgagtcgt
     1621 catcgtaatc cagtttcgcg atcctttctt gcaatgatgg agtatttggg atatatttac
     1681 tgtcaacgtg cctgcctaac ctttcagcta tctcaacggg aacgttcaca taggtatcaa
     1741 cggattcaac caaaggtaat aggcggtcga atccgagcat atttgcaaat cctaccgcaa
     1801 tgcctcttaa ggtgctgctg gacatcaact tgaagatcat tccatatctt gaaccgacta
     1861 tatcttttgg tatatgcttg ctgcaatcaa ggaaaatctt caagtactcc ttgtcaattt
     1921 ccttcatatc tcttgtatag gggctctctt caacagattt tgtatagaaa ctcccaagat
     1981 attgttcatc aaaattgttc ctatctagag atcgtgcgac agcattagct gcccttactg
     2041 catcgtctat acctacattt agtccttcaa ttctgggacc aataaacact ccacgacctg
     2101 ctgcgtcgcc tacgaatagt acatttttat agtatggagt tttcatccta catcgcttgc
     2161 catcgggaat caatctagcg ctgtattcta attctacata attatcacca aattcacagt
     2221 tgtatttttc tactaactcc ttctctagat tgttgattct accctcaatc tcttcccttg
     2281 tcttatattt gccgctctca attagtcgct tgattccatc tctagaatag taatcagaac
     2341 ggagattgtt ccatgtcttt agtaacttga ctgccatgaa atgctggcga atctcttcgt
     2401 cctttgagat caaggcttga ttagcctttc gtgttggaac cctgtctttg atgaattctg
     2461 ctacaaattg atttcgtatc aaagcatcga ttagtcgtga aggttcaacc ggattctcca
     2521 tcattgagtc catgtgatat actgcgccaa gagaaatagt gtctctgttc gtatacaaaa
     2581 aacccccgcc tatatgattc atagtcacat cgcccgcaaa caaatgcgcg gcaccttcct
     2641 cacttgtaat actaaacctg tcttccaaaa ttgtttcagg tagcttgatt acgaccttta
     2701 ctccttggta tagttgttcg gaagagaact tgttccttga ttgggtaaca tccgctagtt
     2761 cagagtttgt accatcagct gcaatgactg cccttactct aaatggctcc agttcatctg
     2821 tctctatcac agtatcattg ctacccgttt cccatctaat tgatctcaca tggaccccag
     2881 atattatccc tccccccatc ttttctgaca tgtcgcttgc ctctttagca agccatggta
     2941 cgagtttact tagtaaaaca gagtaagcat aattaatctg atattcgtga actggagtta
     3001 aatcaataga gtacaattta tccttagatg tggcgtgcaa tatgtattgc gtaatagcac
     3061 gctcgaaagg ggcctcgtca ataaattccc ttccaaatac atcttctata ttataaactc
     3121 taccattctt cggcttctta gagtaaagaa tccctcccga aacattctta gttcctgtgg
     3181 tactccctgc ttcgagcaaa atagcctgtt ttccaaggtt tgagagttgg cgtaatgcag
     3241 taagaccact ggttccgcca ccgactactg cgacatcata attctccatg tcttaagcc
//
LOCUS       DASPFX010000089         2553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1752073, whole genome shotgun sequence.
ACCESSION   DASPFX010000089 DASPFX010000000
VERSION     DASPFX010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1752073"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..171)
                     /locus_tag="VD694_02000"
     CDS             complement(<1..171)
                     /locus_tag="VD694_02000"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HXW11504.1"
                     /translation="MSDDIYREIILDHYRNPRNKGKLENADVTVHDSNPLCGDEIDIH
                     LKVDGGVIKDVKF"
     gene            complement(168..1406)
                     /locus_tag="VD694_02005"
     CDS             complement(168..1406)
                     /locus_tag="VD694_02005"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HXW11505.1"
                     /translation="MQRSVVNSYELRNDFPILRKKINGKELVYLDNASTTQKPNSVID
                     AITDFYTNYNSNIHRAVYQLAEEATALYEKSREKIANFIDASPEEIIFTRNTTESINL
                     IAHSWARTNLKKDDGVAITELEHHSNIVPWQILSQEIGTRLEYVGIDENGFLDLEYLI
                     DLISSKKVKLVSLSHMSNVLGTIVPIERIIKIAHENDIPVLVDGAQSVPHMPVSVKNL
                     DCDFLVFSAHKMLGPTGVGVLYAKKEFLEKMRPFMGGGDMIKEVFKFHTNYNEVPYKF
                     EAGTPNIADVVGFGAAIDYLEKIGMENVRKHEIDLTEYALESILSMKYVTVYGPRDPN
                     YRGGVISFNIADIHPHDLATIMNDHGIAIRSGHHCAQVLMQRLDVPATSRASFYIYNT
                     KEEIDKFVNAIKEAGRIFKI"
     gene            complement(1455..1874)
                     /locus_tag="VD694_02010"
     CDS             complement(1455..1874)
                     /locus_tag="VD694_02010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11506.1"
                     /translation="MVHEREEIALRIREFIESLNQECTAGALVTVEGKKDESALREAG
                     FCGEILIYNNFSGITNFVDHVSRSGRKVILLLDRDKKGKTLTSKILKKLDLFGWHDGL
                     YYKKWFVRMTHGKLMCIENLSNYCIPSAEKYSKSTYS"
     gene            2040..2366
                     /locus_tag="VD694_02015"
     CDS             2040..2366
                     /locus_tag="VD694_02015"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HXW11507.1"
                     /translation="MLENYLMSIGGSEWIIIGLLVVILLFGSKKLPEFSRTIGKAMGE
                     FEKVRAMSLKQRFDDESNYVGPRIAQAVDNERHKLEMLAESLGIDHANKNDEELRLLI
                     LDKINR"
BASE COUNT          751 a          508 c          406 g          888 t
ORIGIN      
        1 aaatttcaca tctttgatta ctcctccatc taccttcaag tgaatatcta tttcatcgcc
       61 acatagagga ttactatcat gaactgtaac atctgcattc tccaacttgc ccttgttcct
      121 tggattcctg tagtggtcta atatgatctc tctgtatata tcatcgctca tatcttgaag
      181 attctccctg cctctttaat agcattaaca aacttatcta tttcttcctt agtattataa
      241 atgtaaaagc ttgccctcga agtagctgga acatcaagtc tttgcattaa gacttgggca
      301 caatgatgac cagatcttat tgctattcca tgatcattca ttatcgtagc cagatcatga
      361 ggatgaatat ctgcaatatt aaatgaaatc actcctcctc tgtaattagg gtctcttggt
      421 ccatataccg taacatattt cattgataga attgactcca atgcatattc tgttaggtca
      481 atttcatgtt tcctgacgtt ttccattcca attttttcca aatagtcgat tgctgcacca
      541 aatcccacga catcagcaat atttggagta cctgcctcaa atttgtaggg gacttcgtta
      601 tagtttgtat gaaatttgaa aacctcctta atcatatctc ctccgcccat aaacggtctc
      661 attttctcaa ggaattcctt tttggcgtat agaactccca ctccagtcgg acccaacatc
      721 ttgtgtgcag agaataccag aaagtcacaa tccaaattct tcacgctaac tggcatgtgt
      781 ggtactgatt gcgcaccatc cactaatacg ggaatgtcat tttcatgggc aattttgata
      841 atcctttcaa taggtactat agtacctagt acatttgaca tgtggcttag tgaaaccagt
      901 tttacctttt ttgaagaaat caaatcaatc aagtattcaa gatctaaaaa tccgttttcg
      961 tcaatcccga catattctaa tctagttcca atttcctgag atagtatctg ccaggggact
     1021 atgttactat gatgttctaa ttcagttatg gctacgccat catctttttt tagatttgtt
     1081 ctggcccaag agtgagctat aagatttatt gattcagtcg tatttcttgt aaagattatt
     1141 tcttcaggac tcgcatcaat aaaattggca attttctctc ggcttttctc atataatgca
     1201 gttgcctctt cagctaattg ataaactgct ctgtggatat tagaattata attcgtataa
     1261 aaatcagtaa ttgcgtctat tacagagttt ggtttttgcg tagtagaagc attatcgaga
     1321 taaactaatt ccttgccatt aatttttttc ctaaggatcg gaaaatcatt tctcaattca
     1381 tagctgttta caacgcttct ttgcatcaat tcttaaatca tgttacaaga gatataaact
     1441 tagattatgg cgtgttagga atatgtagat ttggaatatt tttctgcaga tgggatacaa
     1501 tagttcgaaa ggttctcgat acacatcaat ttgccatggg tcatccttac aaaccacttt
     1561 ttataataca aaccatcatg ccatccaaat aagtccaatt tcttcaaaat ttttgaggtt
     1621 aaggttttac cctttttgtc cctgtcaagc aagagtatga ctttcctgcc actcctcgat
     1681 acgtgatcta caaaattggt aattccacta aaattattat atatcagtat ttcaccacag
     1741 aatcctgctt ctctcaaggc agattcatcc ttcttaccct ctacagtgac aagtgcaccg
     1801 gctgtgcact cttgatttaa tgattcgata aattctcgaa ttctaagggc aatttcttcc
     1861 ctttcatgca ccatgtcttg aattagatat tgatccaaag ttaatgaatc ttatctcatt
     1921 atctcaaata aactccctaa ctaattggta gactctatga ctggaatgat aaaagtgcat
     1981 ttgcaatcta aattctggca aagacttatt tttcatttgt ttaaatctag attattcgaa
     2041 tgctggaaaa ttacctaatg agcatcggcg gttcagaatg gataattata ggacttctcg
     2101 tagttattct cctatttggt tcaaagaaat tacctgaatt ttccagaact ataggaaaag
     2161 ctatggggga atttgaaaag gttcgcgcaa tgtccctcaa acaaaggttt gatgatgagt
     2221 ccaattatgt tggacctcgc attgctcagg ctgttgataa tgaacgtcat aaactcgaaa
     2281 tgctagcaga gtctttgggg atagatcatg ccaataagaa tgatgaagaa ttacgactcc
     2341 ttattttgga caaaatcaac agatgacttg acatattact atcatagttt ttaggcattt
     2401 tctttcaata tttaaatatc tgattttttc aactcacgta atgtcaaatt ctgcaataag
     2461 tggaatcaat ccatttgaag tggcacttac tcaacttgat gaagtttcat ctatcatagg
     2521 tcttgataaa ggactccatc agtttttggc tca
//
LOCUS       DASPFX010000090         2271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1761055, whole genome shotgun sequence.
ACCESSION   DASPFX010000090 DASPFX010000000
VERSION     DASPFX010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1761055"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VD694_02020"
     CDS             complement(<1..337)
                     /locus_tag="VD694_02020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11508.1"
                     /translation="MSLIIGGSMRLTVLQILKLLLFSRLRMSAALTLVVVVVTSGNSV
                     NLFLINHSDIVKEQEIFQSYALINTVFADHGEEISIALNSATFMPLTSAEGNQVRVGV
                     NYTTPNGTLI"
     gene            complement(454..882)
                     /locus_tag="VD694_02025"
     CDS             complement(454..882)
                     /locus_tag="VD694_02025"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11509.1"
                     /translation="MDVNIAHTKARAKQKNTVMVCEDDPAILQLIQQILGSKYSTIAV
                     DSGTECLGKYIDEKAKGNQIDVLLVDYGLPDLPGDIIASTVRELGGNQKIITHTILIG
                     TEEVDKELIDELKSKEYITESIEKPICADTLLAIIEKAIA"
     gene            complement(1099..1536)
                     /locus_tag="VD694_02030"
     CDS             complement(1099..1536)
                     /locus_tag="VD694_02030"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11510.1"
                     /translation="MILDRLIDHIDTYSITKEALTSSPDQYKGRILLVDDDVDITHSF
                     SLALQKDGFIVDMYNDPLIALGDFKADLYDLVLLDIKLPKMDGFELYDKIREIDRRVK
                     VCFISGYQMNYLALREQGLQIDCFISKPIKIEDLLRRINAELA"
     gene            complement(1564..2136)
                     /locus_tag="VD694_02035"
     CDS             complement(1564..2136)
                     /locus_tag="VD694_02035"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11511.1"
                     /translation="MSFQSYTFLDDKSERAVSTDNFIPSREYDGIMTARIQAYQYYHN
                     KDAKRGKGLIADNSKIKKAKTILVVDDDQNTTHAVKSRLENENSHTTNRISYLVHTYN
                     LPTSALLEFKPNFYDLLLIDVEMPKMNGFEFSTKILEIDADPKICFMSAAEVNYEALR
                     EIYPSVNFGCFIKKPISLEHLIRRVRDELE"
BASE COUNT          663 a          435 c          390 g          783 t
ORIGIN      
        1 caattaaggt gccattagga gtagtataat ttactcctac tcttacttga tttccttcag
       61 cggatgttag aggcatgaag gtcgcagagt taagtgctat tgaaatttct tctccatggt
      121 cagcaaatac cgtattaatc aatgcatacg attgaaaaat ctcttgttct ttcactatat
      181 cggagtggtt tatcaggaaa agattaacag agttacccga ggttacgaca acgaccacta
      241 aagtcaaggc tgcactcatt cttaaccttg aaaagagcag aagttttagt atctgtagga
      301 ctgtcaatct catagaacct ccaattataa gagacaataa aaattatata caaatccatt
      361 atttgtagta atggcgtagc ggtagaagct gagctgagca tacaagtgaa cgcgttgctc
      421 agatacaaag atcctatcct aaggatgaat ctatcaagca atagcttttt ctattatcgc
      481 taacaatgtg tcggcgcaaa tgggtttttc gatgctctca gttatgtatt ctttgctttt
      541 tagctcatca atcagttcct tgtcgacctc ctcggtgcct ataagtattg tatgggttat
      601 gatcttttga ttgccaccta actctcttac cgtacttgca attatatctc ctgggagatc
      661 cggcaacccg taatctacaa gtaagacatc aatttggttt ccttttgctt tttcatcaat
      721 gtatttgcct aggcattcag taccagagtc gacagctatc gtgctgtatt ttgaacctaa
      781 tatttgttga attaattgca gtattgctgg gtcatcttcg cataccataa ccgtattctt
      841 ctgctttgca cgagcttttg tatgagcaat gtttacgtcc aaaatacgac acaaataaca
      901 atggggatat tatttaagat attgtaaaat tcttagaata ttattataat gtcatcccag
      961 aaaggggcat tttatatagg atttacgtga ataggccatt cattatttct gcctgacaca
     1021 gaagggtgct gacataaaaa gctgcggaac aaaggatttg gaaagaagct ataacgtcac
     1081 gaacatatat caatatcttc aggcaagttc tgcatttatt ctccttagaa ggtcctcgat
     1141 ttttatcggt ttagatataa agcaatctat ttgtaatcct tgctctctta gggccagata
     1201 gttcatttga tatccgctga taaaacatac tttcactctc ctatcaattt ctctgatttt
     1261 atcatatagt tcaaatccat ccatcttggg cagcttaatg tccaataata ccaaatcgta
     1321 caaatcagct ttaaaatctc ctaacgctat caaagggtca ttatacatat cgactatgaa
     1381 tccatccttt tgtagagcca atgaaaaaga atgagtaatg tcaacatcgt cgtctacaag
     1441 caatattctt cccttgtact gatctggaga tgaagtcaag gcttcttttg taattgaata
     1501 cgtgtcaata tggtctataa gcctgtctaa aatcaataaa ttaattaact aattgattat
     1561 aacctattcc aattcgtccc ttactcttct gatcaagtgc tctaatgaaa taggtttttt
     1621 tatgaaacat ccaaaattga cagaaggata tatttctctc aatgcttcat agttgacttc
     1681 agcggccgac ataaagcata tttttgggtc agcatctatt tccagtattt tggtagaaaa
     1741 ctcaaagcca ttcattttag gcatttcaac atcgataagt agcaagtcat aaaaatttgg
     1801 cttaaattct aatagagccg atgtgggtaa attgtatgtg tgcacaaggt aagatattct
     1861 atttgtggta tggctatttt cattctccag tctgctctta accgcatgag tagtattttg
     1921 atcgtcgtct acaaccaata ttgtttttgc tttctttatt ttgctgttgt ctgctatcag
     1981 tccttttcct ctttttgcat ctttattgtg atagtactga taggcctgga ttctggctgt
     2041 cattattcca tcgtattctc gagatggaat aaaattatct gtgcttactg ccctttcgct
     2101 tttatcatca agaaaagtat aactttggaa gctcaacagt tcaccaatat tgtgcaatgt
     2161 tatgtatcac aacgacttta gaaattctta tcattgtcaa aggaccagtg ataatgcctc
     2221 ttcttctcgc aaagtttgac ttcgctctaa tgcttccttg tgcaattgta c
//
LOCUS       DASPFX010000091         5160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1893123, whole genome shotgun sequence.
ACCESSION   DASPFX010000091 DASPFX010000000
VERSION     DASPFX010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5160
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1893123"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VD694_02040"
     CDS             <1..244
                     /locus_tag="VD694_02040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11512.1"
                     /translation="SFIQDLESKGGEDVLVQYWYAMILTKLSGVNKQESTCLIGHLIE
                     FYQKQLVIVPSKERYVKKMLYMLNSLLTPFDVKTLR"
     gene            complement(276..1076)
                     /locus_tag="VD694_02045"
     CDS             complement(276..1076)
                     /locus_tag="VD694_02045"
                     /inference="COORDINATES: protein motif:HMM:NF021465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HXW11513.1"
                     /translation="MKKFQKLILVALVSISAFSWILSVNQPDMMNIMISYNPALIGLF
                     TASWTAGMAAMMFPAIVPMVLLYNKLLTNEQSLSSVETLQSKFFRLKMILFVGMYLVV
                     WTLTGIGLLLAWSMPMNYVVISSDANNVRIIFGSILIISGIYQFTPLKNKCIGYCESP
                     LSFFMRRWSNGVTGALKMGIFHGLYCLGCCWPYFLIMVALGWMNISWMALFAAIIFGE
                     KIWSRGIWIARSVGIVLISLGILSSLGIVVIYDNMMGMNVPAADNVVM"
     gene            1314..1847
                     /locus_tag="VD694_02050"
     CDS             1314..1847
                     /locus_tag="VD694_02050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11514.1"
                     /translation="MSSIKDKNREIINITLDETKSTVKRTTEEAIKEIPRYTKAVNEY
                     QEESIQAAKEIADNFLESQKEIIHSLQSLWIPYVENVQNSYWSYWTSPKRATESYARA
                     VSNLTDSTITSSRLANNVLFASMDAWKTSLQHARDNAREFSRLNANFARTFENVAKDS
                     LRDFSNREIQSQVHTRQ"
     gene            2003..3190
                     /locus_tag="VD694_02055"
     CDS             2003..3190
                     /locus_tag="VD694_02055"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11515.1"
                     /translation="MEISDGPHNSKIHVIRMSPLRHCSIGRRQGEYKESEDDVKKREV
                     IFSNKSECYCISMIDIVGSTQITSKLYNSGKIKKFYTVFINEIADIVKLHDGKILKTV
                     GDGVIFFFPKTSAVENIDGFKQALECLLHMVSSHHIINAKLHEEFLPDISYRISADYG
                     KLEVAMSGEIYSSYDLFGPTINFCAKINKKAPPNGIAIGADLWRIVNSFPELGKRYHF
                     QEIKELSWKENKYSYPVYMLKSNSEKHIARKPTLSPIDDSMYELESAHKVPTVMLIDD
                     DPSISFLFTQYLRSAGMVVDSFTDPEKALTHFIESDYRHYDLVITDIRMTQLNGFELY
                     QQLKTLDPNVQIIFVTALDIAQEITTLLPEVKLNQFLIKPVNPNVLINSVKQHAKKHF
                     EGA"
     gene            3226..>5160
                     /locus_tag="VD694_02060"
     CDS             3226..>5160
                     /locus_tag="VD694_02060"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HXW11516.1"
                     /translation="MAPATRVIIGKSNAINTELEIFKKANIRIDTCMTYTRPSLAISI
                     KQIKDAFLSAKRRGVKLRYITEINHHNFEDCKVLLGIVDELRHLDGIKTNFMISEEEY
                     LAPLIQEKSEAIASEHIYSDMLQIVEHGRCIFDTLWSKSISAEERFRQIEEDVIPQET
                     KILDNHDEIIKHMIRLSEVSSGLSVVSNHGGMQLTYNSFLEQCKNVLEKQKRGEGEGI
                     RWIMRIEKDSVKLVKKFLRLGVKIRHVKNLAPINFAVSKNGLVATVEEMKGGGMIQNL
                     LTSNERSYIKHFTSMFEQLWKEGVDARYRIKDIEEKVGIAEIEIIRNPVDSIARGWDM
                     VKSARKEIDVLFSSSNALKRQITMGALSLLKNASEKQKVKIRMLLPSSDKSEELIEQT
                     KFNVPKIDIRTISASLETKISILVVDSKQCLILELKDDKQNTSYEAVGLSTYSISPTI
                     ISSYLAVFESFWRQAELFEKMKKVELLEKDFVNIAAHELRNPIQPIIGFSELLYAKID
                     NHEHRRLLDEVILNAKRLERLARLMLDVTRIENNSLVLTREAVDVSKVLNDIVDSYNH
                     KLKEKNMEIIKDNTKMIIIQNGIKNINVTIDKVRITQVFCNILDNAISFTHQGIIRVI
                     LRKEKQDGQTFLIINVKDMGP"
BASE COUNT         1893 a          876 c          930 g         1461 t
ORIGIN      
        1 ttcctttatt caagatctag aatcaaaagg tggtgaagat gtattggttc aatactggta
       61 tgccatgata cttacaaagc tgtctggagt gaataagcaa gaatctactt gcctaatcgg
      121 acacttgata gaattttatc aaaaacaact agtcatagtt ccatcaaagg agaggtatgt
      181 taagaaaatg ttgtatatgt taaattcctt gttgacacca tttgatgtta aaactttaag
      241 atagtatttc cttgcaagaa tcgttcttta ttagattaca tgaccacatt atctgctgct
      301 gggacgttca tccccatcat attgtcatat attacaacta ttccaagact gcttagtatt
      361 cccaatgata tcagaacaat tccaactgac cttgcaatcc atattcctct ggaccaaatc
      421 ttttctccaa atattattgc agcaaaaagc gccatccatg atatgttcat ccatccaaga
      481 gctaccataa ttagaaagta tggccaacag catccaaggc aatagagtcc atggaatatt
      541 cccattttga gtgcgccagt tactccatta ctccatcttc tcataaagaa actaagggga
      601 gattcgcaat agccgataca tttgttcttt aggggtgtaa attgatatat cccagagatt
      661 atcaaaatgc ttccaaatat tattctaaca ttatttgcat cgctagaaat aactacataa
      721 ttcatgggca tggaccatgc taatagtagt cctattccgg ttagtgtcca gactacaagg
      781 tacattccaa caaagagtat catcttaagt ctgaagaatt ttgattgtag tgtttctact
      841 gatgataggg attgttcgtt agtaaggagt ttattgtaaa gtaacaccat tggtactatt
      901 gctggaaaca tcattgccgc cattccagcc gtccaacttg cagtaaataa tccgattaga
      961 gctggattat aactaatcat aatattcatc atgtctggct gattaacaga caaaatccaa
     1021 gaaaatgcag aaattgatac aagtgcaacc aaaatgagct tttgaaattt tttcatgtac
     1081 aatcagattt acaataatag aaaataaaga tacaatttct accaatttat tttgcaaaat
     1141 gaagaattta aaatttcttt agagtcaggt gaatacctac cttgctttga aaattgattg
     1201 attttcacag tttgataacc tttccctaca tgttttaaaa attacgggtt tatatggctt
     1261 taaataccaa taaataccaa cacatatata gtattttgtt ccaattatat cacatgtctt
     1321 caattaagga caaaaataga gaaattatta acatcacttt agatgaaaca aaatcgacag
     1381 taaaaaggac aaccgaagaa gcgattaagg aaattccacg atacacaaaa gcagtcaatg
     1441 aataccaaga agaatctatt caagcagcaa aggaaatagc agataatttt ctagaatctc
     1501 aaaaggagat aatccactca cttcagtcct tatggattcc gtatgttgaa aacgtacaga
     1561 actcatattg gtcctactgg acttcgccaa agagagccac agaaagttat gcaagagcag
     1621 taagcaatct tactgatagt actatcacat cgagcagatt agcaaacaat gtgctatttg
     1681 ctagtatgga tgcatggaaa acatccttac aacatgcaag ggacaacgca agggaatttt
     1741 cacgactcaa cgcaaatttc gcaaggacat ttgaaaatgt agcaaaagat agcttgcgag
     1801 atttttcaaa tagagaaata caatcacaag tccacacacg acaataagca tttacgatag
     1861 atcaaaacta ccgatctatc catttttgtt ttgaatcttt actttttcaa aagatgtttt
     1921 gacgaattaa taagctagtt tcaatagaaa taagctttat tcattactat gaactatagt
     1981 ctcgaatgcc taaatggtat gcatggagat aagtgacggc ccacacaata gtaagataca
     2041 tgtcattagg atgtctccac tacgtcactg cagtataggt aggagacaag gcgaatacaa
     2101 agaatcagaa gatgatgtca agaaaagaga agtcattttt tccaacaagt cagaatgcta
     2161 ctgtatatca atgatagaca tagttggatc tacacaaatc acatcaaaac tgtacaactc
     2221 gggaaagatt aagaaatttt atacagtttt tatcaatgag attgccgata ttgtaaagct
     2281 ccacgatgga aaaatattaa aaacagttgg tgatggtgta atatttttct ttcctaaaac
     2341 ctcagctgta gaaaacatag atggattcaa acaggcattg gaatgtttac ttcatatggt
     2401 atcatctcac catattataa acgccaaact tcatgaagaa ttccttccag atatatctta
     2461 tagaattagc gcagattatg gtaaattgga agttgcaatg tcaggtgaaa tatacagttc
     2521 ttacgatctt tttggaccta ccataaactt ttgtgctaaa atcaataaaa aggcaccccc
     2581 aaatgggata gccataggag cagatttgtg gagaatcgta aattcatttc cagaacttgg
     2641 caaacgatac cactttcagg aaataaaaga attatcttgg aaagaaaaca aatattcgta
     2701 tcccgtatat atgctgaaat caaattcaga aaaacatatt gccagaaaac caaccctgtc
     2761 acccatagat gactctatgt atgaacttga atctgcacac aaagtcccta cagtaatgtt
     2821 aatagatgat gatccatcta tctcctttct atttactcaa tatcttagat cagcaggaat
     2881 ggttgtagat tcatttactg atcctgagaa ggcccttact catttcatag aatcagatta
     2941 cagacattat gatctggtaa ttacagatat taggatgact caactcaatg gatttgagct
     3001 atatcagcaa ttaaagactc ttgatccaaa cgtacagata atatttgtta cagcgcttga
     3061 tattgcccaa gaaatcacga cattattgcc agaggtaaag ctaaatcaat tccttatcaa
     3121 accagtaaac ccaaatgttc ttattaacag tgtcaaacaa cacgcaaaga agcatttcga
     3181 gggagcataa tcataactat agaacaagga aggaggatac aaaagttggc acctgcgaca
     3241 cgggttatca ttggaaaaag taacgccatt aatactgaat tagaaatttt caaaaaagca
     3301 aatatacgga ttgacacttg catgacctat accagacctt cgcttgcaat atcgataaaa
     3361 cagataaaag atgcattctt gtcggcgaag agaagaggtg taaagcttag atatatcact
     3421 gagatcaatc atcacaactt tgaagactgt aaggtgttac taggtattgt ggatgagcta
     3481 agacatctag atggaataaa aactaacttt atgataagtg aggaggaata ccttgctccg
     3541 ctaattcaag aaaaaagtga agcaatagca tcggagcata tttacagcga tatgcttcaa
     3601 attgtagaac atggacgatg catatttgat actctatgga gtaaatcaat ctcagctgaa
     3661 gaaagattta ggcaaataga agaggatgta atacctcagg agacaaagat actagacaat
     3721 cacgatgaga taataaaaca catgattcgt ttgtctgaag tttcttcagg cttgtcagtt
     3781 gtgtcaaatc atggaggtat gcaactaact tacaacagct ttttggaaca atgcaagaat
     3841 gtccttgaaa aacagaaaag aggagaaggg gagggaatta gatggatcat gagaattgaa
     3901 aaagatagtg tcaaactggt caagaagttt cttagattag gagtaaaaat aagacatgta
     3961 aagaatctag ctcctatcaa ttttgcagta agtaaaaatg gacttgtggc cacggtagaa
     4021 gagatgaaag gaggaggaat gatccagaat cttcttacca gtaacgaaag atcttacata
     4081 aaacatttta cttccatgtt tgagcagtta tggaaagaag gagtcgatgc acgatatcga
     4141 attaaagaca tagaagaaaa ggttggtatt gcagaaatag agataattcg gaaccccgtt
     4201 gattcaattg ctcgcggttg ggatatggta aaatcagctc gaaaagaaat tgatgtttta
     4261 ttctcctctt caaatgcatt aaagcggcaa attactatgg gagcactgtc actcttgaaa
     4321 aatgcatcgg aaaaacagaa agtaaagatt agaatgttac ttccgtcttc tgataagtca
     4381 gaagaactaa tagaacaaac aaaattcaat gttcctaaaa ttgatattag aacaattagt
     4441 gcaagtcttg aaacaaagat ctctatactt gtagtagatt ccaaacaatg tcttattttg
     4501 gagctaaaag atgacaaaca aaatacatct tatgaagcgg taggattgtc cacatactca
     4561 atcagcccta ccataatctc gtcttatttg gctgtatttg aaagtttttg gagacaggca
     4621 gaactttttg aaaagatgaa aaaagtcgaa ttgctcgaaa aggactttgt aaatattgct
     4681 gctcatgaat tgcgaaatcc catccagcca ataattggtt tctcagaact gctttatgcg
     4741 aagattgaca accatgaaca cagacggcta cttgatgaag tcatattgaa cgcaaagaga
     4801 cttgagagac tggcacgatt aatgcttgat gtaactcgga ttgagaacaa ttcgttggtt
     4861 ttaacaagag aagctgttga tgtaagtaag gtcttgaatg atattgtcga tagttataac
     4921 cacaaattaa aggaaaagaa catggaaatc atcaaggaca ataccaaaat gataataatt
     4981 cagaatggaa taaaaaatat caacgttaca atagacaagg ttaggattac acaagtattc
     5041 tgcaacattc ttgataatgc aatcagtttt actcatcaag gaataattcg tgtaatatta
     5101 agaaaggaaa aacaagacgg gcagaccttt ctcatcataa acgtgaaaga tatgggtcct
//
LOCUS       DASPFX010000092         4219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1164085, whole genome shotgun sequence.
ACCESSION   DASPFX010000092 DASPFX010000000
VERSION     DASPFX010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4219
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1164085"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..981)
                     /locus_tag="VD694_02065"
     CDS             complement(229..981)
                     /locus_tag="VD694_02065"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HXW11517.1"
                     /translation="MFIAKTKTALMQTFLIAYLTGILWLKRNPLSLIFSAISPFSLLF
                     ILFIISDGKYLPLSITGSLVMALVGYGLSLGQDISFYKNEYKIQDLFVASPVSPITYM
                     IGLAISQILFGLPALLVLLSLASLFLSSSIFFPLLIVTTLLVWGSMSSMGFFLSSHML
                     HMRNVSQIISFVNVILSILPPVFYSIDRLPIQFQFASYLVPTTHASLMIQTTMGLPTP
                     KEWSIELGLLVQVAYLVGFVMLAKVKALWRET"
     gene            1041..1313
                     /locus_tag="VD694_02070"
     CDS             1041..1313
                     /locus_tag="VD694_02070"
                     /inference="COORDINATES: protein motif:HMM:NF017917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaB family protein"
                     /protein_id="HXW11518.1"
                     /translation="MPKKQSSSKKGSRNIQLSTRTKKQIDSLPQHAQHIFKRAHDSAV
                     KQYQDPEKRRGGKKQSAEVVAHKTAWAAVKKKYKKQGDKWLRKQAK"
     gene            complement(1520..2017)
                     /locus_tag="VD694_02075"
     CDS             complement(1520..2017)
                     /locus_tag="VD694_02075"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW11519.1"
                     /translation="MESNHTPASINHIAISVPDLEKGINWYQDVMGFIVIRGPAELTS
                     NDIQVGKELVNIFGPQFKRLRIVWMSSSNNIGIELFQFMEPEQLTEKRQVEYWHGGVI
                     HIAVTERNIEALLAKVTKNGGKQISNIWELDPKKHHKLVFCTDPFGNMIEIYSHSFEQ
                     FHANR"
     gene            2252..3085
                     /locus_tag="VD694_02080"
     CDS             2252..3085
                     /locus_tag="VD694_02080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11520.1"
                     /translation="MKLDIYAYFVLLGVIMAFSYNNILFAHNFYQNDNSVLYTLIKQF
                     EIEKNLASKNQLSNNSTFSIHSEMADQYFHQLASTRNDVSENSNFSNHYDDLFSEVNL
                     TTKALVSANIADEALREYGLSNGLDPKMASRLLNMSVDMIMEMNETSTMNMTDSANKY
                     DMENMTPMVGSQSNIELSQGSKVVENLANYETSVELAKSLKVLFTNYLQGAKLEESTG
                     LMPIPTGMKINAIRELGMGIDNLVNSVNRNAPLQEVYSIVHGQIHPNLFLAFSLKLKS
                     D"
     gene            3168..3881
                     /locus_tag="VD694_02085"
     CDS             3168..3881
                     /locus_tag="VD694_02085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11521.1"
                     /translation="MDNSRLLQKISGLRTVCKTISQIKSQLIEELPHYGHDALFFQND
                     EITTGLLNNKTEVKLHLITGELLYFHNEVGHFVDLTCDGFYEKLESIVTKYGLNMPKV
                     SSLTLQQENLFEFLPFAKKVNKSLELFRMKLRDHFTQVHLWPEGFDFSIESFINASNG
                     QIGVGVSPGDDRYELPYLYVNPYPFRENIVRQPLPIGKWHTTGWNGVKVEWNELETKK
                     EQDICSEIYNIFLVAMHNF"
BASE COUNT         1437 a          701 c          770 g         1311 t
ORIGIN      
        1 agatctattc tgatgcatct agtaattact agtaaaatat caataagaat actgaatcaa
       61 gtttccaaat agaagaacgt atacggcatt taatatccat gggcaaaatc cacatatatc
      121 aacagattat gtttcaatcc aaagtatcaa gatagacact tcaattcatg actcatatcg
      181 tagcatatga cccaaaattg gatctagacc aaaaatagtc cctgaatatt aagtttcgcg
      241 ccatagtgcc tttaccttag ccaacattac aaaacctaca agatatgcta cttggaccaa
      301 aagtcctaat tcgatagacc attctttagg tgttggcaat cccatggtgg tttgaatcat
      361 caaggatgcg tgagtagttg gtacaagata ggaagcaaat tggaactgga taggcaacct
      421 atcaatactg taaaaaacag gtggtaagat tgataagatc acgttaacaa aagatatgat
      481 ttgtgaaaca ttgcgcatat gtagcatgtg ggaggacaga aaaaatccca ttgaagacat
      541 tgagccccat actagtaacg ttgtaacaat caacagagga aagaaaattg aagaagaaag
      601 aaacagagaa gctaacgaca ataatactag taatgccggt aatccgaaaa gaatttgtga
      661 tattgcaaga ccgatcatgt aagttattgg agacactggt gaggcgacaa agagatcctg
      721 aatcttgtat tcgtttttgt aaaatgatat atcctgacct agtgataggc catatccaac
      781 taatgccatt accaaacttc cagtaataga gagtggtaag tacttgccat cactaatgat
      841 aaacagtata aatagtaagg aaaagggact tatcgcagaa aatatcaaag acagaggatt
      901 tcttttcaac cacaggattc cagttaggta agcaatgaga aaagtttgca tcaatgctgt
      961 cttagtttta gcaataaaca tggcaagcaa accgtgtatt ccagatatat aggattatgt
     1021 cttatccata atattaggaa atgcccaaaa aacaatcctc gagtaaaaag ggatctcgaa
     1081 atatacaact atcgactaga accaaaaaac agattgattc cttacctcaa catgctcaac
     1141 atattttcaa gagggcgcat gacagtgcag taaaacaata tcaagatccg gaaaaaagaa
     1201 gaggaggtaa gaaacaaagc gctgaagtag tagcgcataa aactgcatgg gccgcggtta
     1261 agaagaaata caaaaagcag ggcgataaat ggttgaggaa acaagcaaag taggctttac
     1321 tcttgaaaat tgtaagtgac gagtgtagac cctcaagcgt agtaggttgc gcctagagga
     1381 atattgttgc tggcttttcg aaatactgtg ttgattatga ttattttagt attaaattgc
     1441 taatgaaaaa atgtaatcga aagtactcac ttgtaatttc aaatagcaag ttattatggg
     1501 aacaagtttt ccaatgaatt tatctgttag catggaactg ctcaaagcta tgcgaataaa
     1561 tttcaatcat atttccaaat ggatcagtgc agaaaaccaa tttgtgatgt ttttttgggt
     1621 ctagctccca aatattgctt atctgttttc ccccattctt agttaccttt gctagtagag
     1681 cttcaatgtt tctttcagtg actgcaatat gaataactcc accatgccag tattcaactt
     1741 gtctcttttc tgtaagttgt tcaggttcca taaattggaa taactcaatt cctatgttgt
     1801 tagatgaaga catccatact attctcaatc tcttaaattg tggcccaaaa atattcacaa
     1861 gttctttacc tacttgaata tcattggagg tcagttcagc aggacctctt attactatga
     1921 atcccatcac gtcttgatac cagttaatac ctttctctag atcaggaaca ctaattgcaa
     1981 tgtgattaat tgatgcagga gtatggttcg attccatgct aatcgactaa attgtacttg
     2041 tgttcgttct aaaaaggttg ctaattagtt tttcatcaat ctgactcaat gtgatcaatt
     2101 tctctattac aatcttgtta attgaggttt tatgagtagt aagaaattat attgggatat
     2161 taagataaca agaatatttt ttatctttac tcttcgcatt gaaatgatta tcacatgttt
     2221 tttatttggt aacaaccata gttaccacta catgaagtta gatatttatg catattttgt
     2281 cctgcttgga gttattatgg ctttttcata caataatatt ctatttgcac ataattttta
     2341 ccagaatgat aattcggtac tttatacttt gataaaacaa tttgaaattg aaaagaatct
     2401 tgcatcaaaa aatcaattat caaataattc aacgttttca atccattcag aaatggcgga
     2461 ccaatatttt catcaacttg cctccaccag aaacgacgtt agcgagaatt caaatttctc
     2521 taatcattat gacgatcttt tctcggaagt taatttgact accaaggcgc tagtttctgc
     2581 caatattgca gatgaagcac ttcgagaata cggattatcg aatggtcttg accccaagat
     2641 ggcttctcgt ttgttaaaca tgagtgtaga tatgatcatg gaaatgaacg aaacgtcgac
     2701 aatgaatatg actgatagtg caaataaata cgatatggaa aatatgacac caatggttgg
     2761 tagtcaatca aatattgaat taagtcaagg aagcaaagtc gtcgaaaact tggccaatta
     2821 cgagacatct gttgaactag ccaaatcatt gaaggtattg tttactaatt atctacaagg
     2881 tgccaaattg gaggaatcta ctggattgat gcctatccca acagggatga agattaatgc
     2941 gataagggaa ttgggtatgg gcatagataa ccttgtcaat tcagtgaaca gaaatgcacc
     3001 gttacaagaa gtttatagta tcgtccatgg acaaattcac ccgaatcttt ttttagcttt
     3061 tagtttgaag ctaaaatctg attaattaga aacagcagtt gctgctaaag ttagaccagt
     3121 gaaccgggga tcatagtttt taagagataa ttactcatag aagactaatg gataattcca
     3181 gactcctaca gaaaatttct ggtttgcgta cagtatgcaa aactatttct cagataaagt
     3241 cacaattgat agaagagtta ccacattatg ggcatgatgc actttttttt caaaatgatg
     3301 aaataacaac tggtttactg aacaacaaga cagaagtaaa acttcattta attacaggag
     3361 agctcctcta ttttcataac gaggttggac actttgttga cttgacttgt gatggatttt
     3421 atgaaaagtt ggaatcaatt gttactaaat atggactcaa tatgcctaag gtgtcatcgt
     3481 tgacattgca gcaagagaat ttatttgaat ttctaccatt tgcgaaaaag gtcaacaaga
     3541 gtcttgaatt gttcagaatg aagttgaggg atcattttac tcaggtgcat ttatggcccg
     3601 agggttttga tttttcgatt gaatctttta tcaacgcaag caacggtcag attggagttg
     3661 gtgtctcacc aggagatgat agatatgaat taccttatct ctacgtgaat ccttaccctt
     3721 ttagagaaaa tattgttcgc caaccattgc caattgggaa gtggcataca acaggttgga
     3781 atggagtaaa agtggaatgg aacgaacttg aaaccaaaaa agaacaggac atctgctctg
     3841 aaatttacaa tatatttcta gttgccatgc acaattttta ggaaattata acattcatca
     3901 tatcgatccc tttatcccga cagtaatatt tgtgttaata actttcatca cattgataat
     3961 tgcagtgctt tgaatagtat ctatggggta ttatttatca actgctctgt tttttctatt
     4021 tatcgttact ttatgcagta tccagatctt gacaaataat tatcatcatt gacgtttact
     4081 aactagtttt tatctaatgc gatctagatt attcttgatt gaatgtgaaa tagatttcag
     4141 ctatggctcg tcatgtagaa tgacaaaatc agctaatttt ccctcatatt gtagatagtc
     4201 tattttcagg tcatctact
//
LOCUS       DASPFX010000093         2174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1650670, whole genome shotgun sequence.
ACCESSION   DASPFX010000093 DASPFX010000000
VERSION     DASPFX010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1650670"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VD694_02090"
     CDS             complement(<1..323)
                     /locus_tag="VD694_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase N-terminal
                     domain-containing protein"
                     /protein_id="HXW11522.1"
                     /translation="MSDLNSNEVSNIYENIARTKVSLQGKRYDILRKNALEDPEQFWE
                     QQAKNLVWFKYWDRTLTWDPPFAKWFVGGSLNASVNCIDRHVDTQFKNKAAIIWQGEN
                     VEETRT"
     gene            493..759
                     /locus_tag="VD694_02095"
     CDS             493..759
                     /locus_tag="VD694_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW11523.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENNLLEYLEGSQTYKTTEKGLNFLRMHNEIGELLQTSAKQGGA"
     gene            complement(850..1695)
                     /locus_tag="VD694_02100"
     CDS             complement(850..1695)
                     /locus_tag="VD694_02100"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HXW11524.1"
                     /translation="MSEVKLEFIGKQVKDMYGTYMGKVIGMVTDIDGSIESVSVDCGY
                     AGLKQLVYEQLLVQGDYVIFIPKWRLDVQKLLRQKNLVLQRIKALQEMVTANDLMRED
                     VELVYIKYQKRLQDLEDKGKIVLGQLQERLNQIDAESQNIKSVLFDAKLQYRSNEITE
                     ETFQQISLSTNDLIEHVNLEKGEINNVISRLSQQTFERMDLNSVQNPLSDQPKSNSSL
                     ESNSQSPGGDIPVTGPQAVGAAAAADNDYNNDNDDDHPKTIRKETTTEDEAETSWLNQ
                     VLQHD"
     gene            complement(1820..>2174)
                     /locus_tag="VD694_02105"
     CDS             complement(1820..>2174)
                     /locus_tag="VD694_02105"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HXW11525.1"
                     /translation="GVYGAVNNEQIVDKISKFNMNVLEGEGQIIGFNGLILGLAKERG
                     LNAMCILGEIDNPNVIQPMTAKAILHTLTKILGIPSLDMKELEEEEKRKKFMEQQMNY
                     LENVMEHGGKPPGIA"
BASE COUNT          623 a          436 c          344 g          771 t
ORIGIN      
        1 gtcctcgttt cctctacatt ttctccttgc caaataattg cggccttatt cttgaattgc
       61 gtgtccacat gtctatcaat gcaatttacg gaagcattaa gtgaacctcc gacaaaccat
      121 tttgcaaatg ggggatccca agttaatgtt ctatcccagt acttgaacca taccaaattt
      181 tttgcttgtt gctcccagaa ctgttctgga tcttccaacg cattctttct tagtatatcg
      241 tatctcttac cttgaagaga tactttagtc cgtgcgatat tttcgtatat atttgatacc
      301 tcattagagt tgaggtcaga cattatgtta tgatagaaga tctgaataat tttaaaacct
      361 tatggggaag tttgtttata tctgaagttg taatgtcaga aattgcggta taaggtataa
      421 cgtcaatata gaagtttctt actgtagatt gtgtcaatat attaaaataa agaaattcag
      481 tgtatctaaa ttgtgaaata cagaagcaga acagaaatag tggcaatgat cctagaggct
      541 gcaaatggag gagcaaccaa gacaaaaata atgtataagg ctttccttag ctatgcacag
      601 ctaagagaat atctttcggt actcatcgag aacaacttat tagagtatct tgagggttct
      661 caaacataca agacaactga gaagggtctg aattttctga gaatgcataa tgaaataggc
      721 gagctcttgc aaacatctgc aaaacaaggc ggagcctaaa tatttatttt ttacaagtct
      781 tccttttttt ctaaaaagta ttaaatatta atcaaaacta ttttgtattt tttattaaat
      841 taaattaatt taatcgtgtt gtagaacctg attaagccaa ctagtttcag cctcgtcctc
      901 agtagtagtt tccttgcgaa tagtcttagg atgatcgtca tcattatcat tattataatc
      961 attgtctgcc gctgcagcag caccaactgc ttgaggccct gtaacaggaa tgtcacctcc
     1021 aggtgactgt gaatttgatt caaggctgga gttggatttt ggttggtctg ataaaggatt
     1081 ttgtactgaa ttcaaatcca tcctctcaaa tgtctgttga cttaatctag atatgacgtt
     1141 attaatctct cctttttcta agttaacatg ctctattagg tcattggtag acaaactaat
     1201 ttgttgaaat gtttcttcgg tgatctcatt gcttctatac tgtaactttg cgtcaaatag
     1261 taccgatttt atattctggc tttccgcatc tatctgattc agtctttctt gcagttgtcc
     1321 cagaactatt tttcctttat cctcaaggtc ttgcaatctc ttctggtact ttatatacac
     1381 caattcaacg tcctctctca tcaaatcatt agccgtaacc atctcctgta acgctttgat
     1441 cctttgtaat acaaggtttt tctgcctaag taacttctgt acatccaatc tccattttgg
     1501 gataaaaatt acataatcac cttgtactaa taattgctcg tacactaatt gctttaatcc
     1561 tgcataaccg caatctacac taacggattc tatggagcca tcaatatctg ttaccatacc
     1621 aatgactttt cccatgtagg ttccgtacat gtccttaacc tgtttaccaa taaattctaa
     1681 ctttacttca ctcatgcaaa cgctttatta agctgatata atggcaatgt tgtcaaaatt
     1741 gttgaattat ttggcaaaag atttcatcgt aatctaattc gaaaactttg ccggcttacg
     1801 taatttctat aataccagtc tacgctatcc cagggggttt gcccccatgt tccatcacat
     1861 tttctaggta attcatttgc tgttccataa actttttgcg cttttcttcc tcttctaact
     1921 ctttcatatc caaagaaggg attcctagaa tctttgttaa tgtatgtaga atagccttag
     1981 cagtcatagg ttggataaca ttaggattat cgatttcgcc tagaatgcac atcgcattca
     2041 atcctctttc cttcgcaagt cctaatatta gaccgttaaa tcctataatt tgtccttccc
     2101 cctctaggac gttcatattg aatttactta tcttatcaac aatctgttca ttatttactg
     2161 cgccatatac tcca
//
LOCUS       DASPFX010000094         2462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1037018, whole genome shotgun sequence.
ACCESSION   DASPFX010000094 DASPFX010000000
VERSION     DASPFX010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037018"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VD694_02110"
     CDS             <1..465
                     /locus_tag="VD694_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11526.1"
                     /translation="GHFNRTEWNTLDKNVGMIPIFPVPQSGDTSATMMGGWMLGIPQT
                     STNKALSWELLSIMVQPDVLAPMLEKYAYLPTQKPIAEGQYSDQLAKTIPYYKELISM
                     LSIGHSRPSISEYPQIADNIRQAIDEVYLGVKEPKQALDDAAKKSAEVLGWK"
     gene            516..1394
                     /locus_tag="VD694_02115"
     CDS             516..1394
                     /locus_tag="VD694_02115"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HXW11527.1"
                     /translation="MLEQKAGMLQPYLLLAPALAILTAFLLFPLTWNVYLSLHDVSLT
                     TILSDWKYIGLKNFANLIHDSDFHMSLLVSLIFVGGSVALQFLVGMVLAVVLNQQIKG
                     SNALRALFIIPWTVSAVITGFSFKFIFNDSFGIMNYGLGQLGIEPVSWLSEPGTVIWT
                     LVVANMWHGTPFTVIFLTAGLFSINPVVYEAARIDGATKIKGFFYITLPLLRPFVIIN
                     LILITMWSVNFFDLILVMTNGGPLFSSTTSSLFMYRQAFEFGLLSKGAAVGFLLIATN
                     LVLAYSYIKLLRSRDK"
     gene            1398..2222
                     /locus_tag="VD694_02120"
     CDS             1398..2222
                     /locus_tag="VD694_02120"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HXW11528.1"
                     /translation="MLLLERSLIYFVIATYLFITLAPLLWVLSTSFKPNPEAISFPPQ
                     FLPGKPTLDNYIFVLTDPKLVISLFNSLAVSLASTGLSVTVSALGGYAFARFDFKGKN
                     LLISTILGLFMIPVVINIIPLYIMLANVGLLNSLFALVLTFQILIIPLNIFLLKNYFE
                     TIPKELEEAALIDGCSKIRAFWHVIVPISMPGFLIAAILSFRFSWNEFVLPVVLSNRP
                     DVMVFQVALYQFISLYRIDWGYLTAGINIALIPVVVLMLIFQKRMIRGMTLGAVRG"
BASE COUNT          701 a          471 c          471 g          819 t
ORIGIN      
        1 ggacatttta atcgcactga atggaatact cttgataaaa acgtaggcat gattcccata
       61 tttccagttc ctcagtcagg tgacaccagt gcaaccatga tgggtggatg gatgcttggc
      121 atccctcaaa cttccacaaa taaagctctt tcatgggaat tgctctcaat aatggtacag
      181 cctgatgtgc ttgcacccat gttagaaaaa tatgcctatc ttccaactca aaaaccaatc
      241 gctgaaggac aatattcaga tcagcttgca aagaccatcc cctattataa agaactcatc
      301 tcaatgttat cgataggcca tagcagacct agcatttctg aatatccaca aattgctgac
      361 aatattagac aggcaataga tgaagtttat ctgggagtaa aagagccaaa acaagcatta
      421 gacgatgctg ccaagaaatc tgcagaagta cttggctgga aatagatgaa accttactta
      481 caacttcaat attgaccctt taattagcta tagtcatgct agagcaaaaa gccggtatgc
      541 ttcaaccata tctgcttcta gcgccagctc tagcgatact aactgcgttt cttttgtttc
      601 cacttacgtg gaacgtatat ctatctctac atgatgtatc attaactaca attctgagtg
      661 attggaagta tattggacta aagaatttcg cgaatctaat acatgacagt gattttcaca
      721 tgtcacttct tgtgagtttg atatttgtag gtggttcggt agctcttcag tttcttgttg
      781 gaatggtact tgcagtagta ttgaaccagc aaatcaaggg atcaaatgcc ctcagggcac
      841 tattcataat accttggact gtgtctgcag tgataacggg tttttccttt aaattcatct
      901 ttaatgatag ttttggaatt atgaactatg ggcttggtca attgggaata gagcctgttt
      961 cctggttatc agaaccagga acagtaatat ggactctggt ggtagcaaac atgtggcatg
     1021 gaacaccttt cactgtaata ttcctaactg caggactatt ttcaattaat ccagtagttt
     1081 atgaagcagc aagaatagat ggggcaacga agatcaaagg tttcttttac ataacactgc
     1141 cacttttaag accatttgtt attataaatc ttattcttat tactatgtgg tcagtaaatt
     1201 tctttgattt aatcctagtc atgacaaatg ggggcccact tttttctagt accacctcat
     1261 ccttgttcat gtatagacag gcatttgaat ttggattact gtccaaaggt gctgctgtag
     1321 gttttttgct aattgcaacg aacttggtgt tggcatattc atatataaaa ctattaagga
     1381 gtcgagacaa atagtttatg ttactgttag aaaggagctt gatttatttt gttatcgcaa
     1441 cttatctctt tattacttta gcaccacttc tatgggtgct ttcaacttca ttcaagccaa
     1501 atccagaagc aataagcttt cctccacaat tcctgccggg taaacctacc ttagataact
     1561 atatctttgt tctgacagat ccaaaactcg taatcagtct tttcaacagt ttggcagtaa
     1621 gtttggcaag tactgggtta agtgtaaccg taagcgccct tggtggatac gcttttgcga
     1681 ggtttgattt taaaggaaaa aacctgctta tcagcacaat tttggggcta tttatgatac
     1741 ctgttgtcat caacattatt cctctataca taatgctggc caatgtgggt cttctcaact
     1801 ccctattcgc attggtactg acctttcaaa tccttattat tccgctcaat atatttctgc
     1861 taaagaacta ttttgaaact atcccaaagg aactggaaga agcagccctt atcgatggtt
     1921 gttcaaagat acgagctttc tggcatgtca tagtaccaat ctcaatgccc ggatttctaa
     1981 tagcggctat cttgtcgttc agattttctt ggaatgaatt tgtattgcct gtggttctct
     2041 caaatagacc agatgtcatg gtctttcaag ttgccttgta tcagttcatt tcgctttata
     2101 gaattgactg gggttaccta acggcaggga taaatattgc acttattcct gtagttgttt
     2161 taatgctaat cttccaaaag agaatgataa gaggtatgac tcttggggct gttagaggat
     2221 aagttcacaa tctatttaga ttagcgattt ggcccataat ttctgtctag gtgtgttttt
     2281 aatcgaggtg tttttatcaa gaaatttatt tcaaatcacg caactttatg ttataattaa
     2341 gtccaaacct atgagcctcg tcccttagat attgcaatat ctttagcgac ttgctggtct
     2401 ttggtatggc tgtcggaaac ggggaattgg gaacgaatat ttcttctctt tgttttgcaa
     2461 tt
//
LOCUS       DASPFX010000095         3269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1463243, whole genome shotgun sequence.
ACCESSION   DASPFX010000095 DASPFX010000000
VERSION     DASPFX010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3269
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1463243"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2078
                     /locus_tag="VD694_02125"
     CDS             <1..2078
                     /locus_tag="VD694_02125"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HXW11529.1"
                     /translation="FKEIRFAINYLINREFVVDEILNGYGSVQTDPFGISSPEYETII
                     PILESYNFKYNPNLAKEVIDKVLPANGAIKIGDKWTYKGTPILVKFMIRSDDLPRKSM
                     GEILANQLDSIGFTVQRNYGDLNKANIIVYGTDPQDLEWQVYTEAFGGTSAFVRYNPV
                     TAAQMYSPYFGKMPGWANPSFWNYQNSTLDKITQSIEFSNFTTQEERNELLRQAVSSG
                     IQESVRIFVAQNIDPYVASSSIKGLINDFGAGISTDKSLINARSDKNASTINIGVKQI
                     YQGAWNGVGGCNDIYCRDILSLVSDSATSRNPYTGEVVPLRIQWTNITTMGPEKRLAV
                     DSDALKWNSRNQIWEKVGENTSKSKVTYHMTYSNWQNSQPMSKADLLYPLYFLYEWSS
                     KINSTDLTFDPEYAAQAVIALQYLRGTKFLDDNNAISFVDYWHFDSKEIADFSPVWAT
                     SPWEVNAAIERLVKNGNFAYTRSEATVKNIEWLSLIIPSHAQAIKLELEKMKSEHFVP
                     VALKDYVTIDEAIKRYDASIKWISEHNHAIIGNGPYEIKNYNPTGKVITLTAFRDSTY
                     PFAKGYWSNFETAKLAKFVKVQQPKVVTSGLPLTITGNITIGDNYDSNASLTYFITDK
                     NSRLVAQGEGEWVDNKGNFMITINGTITKGMSIGPNEFELFVKSNYALRPDIYSGVLI
                     TVPNTMITK"
     gene            2113..2322
                     /locus_tag="VD694_02130"
     CDS             2113..2322
                     /locus_tag="VD694_02130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11530.1"
                     /translation="MMKGEAVQLNMDDDCNETQWNEAVVYYKANGYPNEESYMDMLGS
                     KFIQLNSDKWVQDQADLDEYLKENK"
     gene            2377..2709
                     /locus_tag="VD694_02135"
     CDS             2377..2709
                     /locus_tag="VD694_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11531.1"
                     /translation="MTIDQILQAEINDSELWLSRTQEESTYKQDLKTRIELINWVLEN
                     MSNPDVEICSLLESRMNETIFKINKTYSILEADVFHSELRILDWIFYQVCKDHQKSWE
                     KSLLGYQK"
     gene            2771..3139
                     /locus_tag="VD694_02140"
     CDS             2771..3139
                     /locus_tag="VD694_02140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11532.1"
                     /translation="MTEEENAFDKVKKGVNEVVGGTAGVVEGTAQGIKEAVEDTKEGV
                     EDTKEGVKETAREATDTDMYTSSYEETKNREYKEAGEELEDAGDKVKAGAKAVASKVK
                     DPDKDLDSEYEKEKAEEKMD"
BASE COUNT         1194 a          506 c          667 g          902 t
ORIGIN      
        1 aattcaagga aattcgtttt gcaataaatt acctgattaa ccgtgaattc gtagtggatg
       61 aaattctaaa tggatatgga agtgtccaaa cagacccatt tggaatatcc tcgccagaat
      121 atgaaactat tattccaatt ctggaatctt acaatttcaa atataatcca aatcttgcta
      181 aagaagtaat tgataaagta ctgcctgcaa atggcgcaat aaaaatagga gataaatgga
      241 catacaaagg aactccgatt ttagtcaaat ttatgataag aagtgatgat ctgcctagaa
      301 aatcaatggg tgaaatactt gcaaaccaac tcgacagtat tggttttact gtccaaagaa
      361 actatggaga tttgaataag gctaacatca tagtctatgg tactgatccg caagatttag
      421 aatggcaagt ttatactgaa gctttcggtg gaacatcagc ctttgttagg tacaatcctg
      481 ttacagccgc tcaaatgtac tctccttatt ttggtaaaat gcctggatgg gctaaccctt
      541 cattttggaa ctatcaaaac tctacactag ataaaattac acaaagtata gagttttcta
      601 attttactac tcaagaggaa cgtaatgaac tattaagaca ggcagtgagt tcaggaattc
      661 aggaatctgt aagaattttt gtagctcaaa atattgaccc gtacgtggct tcctcttcaa
      721 ttaaaggatt gattaatgac tttggtgcag gtatctctac agacaaatct ctcataaacg
      781 caagatcaga caagaacgcc tccactataa atatcggtgt taaacagata tatcaaggag
      841 catggaatgg agtagggggt tgtaatgaca tttattgcag agatatcctt tccttagtat
      901 cagattcagc tacatctaga aatccataca ctggcgaagt ggttcctttg aggatacaat
      961 ggactaatat cacgacaatg gggccagaaa aaagactcgc cgtagatagt gacgccttaa
     1021 aatggaattc gaggaatcaa atttgggaaa aagttggaga gaatacttcc aaaagtaagg
     1081 ttacttatca tatgacttat tcaaactggc aaaatagcca accaatgagc aaggcagatt
     1141 tgctttatcc tctttatttt ctatatgagt ggtcatccaa aattaattca actgatctta
     1201 cgtttgaccc agagtacgct gctcaagccg taattgcgtt acagtatctt cgaggaacta
     1261 aatttctaga tgacaataat gcaatttcat ttgttgatta ctggcatttt gatagcaaag
     1321 aaatagcaga tttctcaccg gtttgggcaa cctctccctg ggaagttaac gcagcaattg
     1381 aaagattagt aaaaaacgga aactttgcat atactagatc ggaagcaaca gtcaaaaata
     1441 ttgaatggtt atcattgata ataccaagtc atgcgcaagc aataaaacta gagttagaaa
     1501 aaatgaaatc cgaacatttt gtacctgtgg cactaaagga ttacgttact attgatgaag
     1561 caataaagcg atatgacgca agtataaagt ggatatccga acataatcat gcaataattg
     1621 gtaacgggcc atatgaaatc aagaattata acccaacagg taaagtaata acgctaactg
     1681 catttaggga cagtacttat ccattcgcaa aaggatattg gtctaatttt gaaacggcaa
     1741 aacttgcgaa atttgtaaaa gttcaacaac caaaagtggt gacgagcgga ttgccattaa
     1801 ctatcacagg gaacataacc attggtgata attatgatag taatgcctca ctaacctact
     1861 ttattactga taagaatagt cgccttgtag ctcaggggga aggggaatgg gtagacaata
     1921 aaggaaattt catgattacg attaatggta ctattactaa aggaatgtct attggtccaa
     1981 atgagtttga attgtttgtc aagagcaatt atgcgctaag acccgatatc tacagtggag
     2041 tgcttatcac agtgccaaat acaatgatca ctaagtagtc ctttaattat ttcatctaac
     2101 tgtataaccc tgatgatgaa aggtgaggcc gtacaattga atatggatga tgactgtaat
     2161 gaaacacaat ggaatgaagc ggtagtatac tacaaggcaa acggatatcc taatgaagaa
     2221 agttatatgg atatgctggg aagtaaattc atacaactaa attctgacaa atgggtacag
     2281 gatcaggcag atttggatga atatctcaag gaaaataagt agaccctccc gttaagatac
     2341 cttttctatt aaatcatcgt tgcttgaaat tattgtatga ctatagatca aatattgcaa
     2401 gcagaaatta acgattcaga gctttggctt tctcgtacac aagaagaatc tacatacaaa
     2461 caagatctca aaacaaggat cgaattgata aattgggtac ttgaaaatat gagtaatcct
     2521 gatgtagaaa tctgcagtct tctagaatca agaatgaatg aaactatttt taaaataaac
     2581 aaaacttact cgatattaga ggctgatgta ttccatagtg aattacgaat tctagattgg
     2641 atcttctatc aagtatgtaa agatcaccaa aagagttggg aaaagagttt gttgggttac
     2701 cagaaatagt aattttttgt aacttgacgc ctgattgaag cgttaaataa cttgttgtag
     2761 tgagtttaac atgactgaag aagaaaacgc ttttgataaa gtaaaaaagg gagttaatga
     2821 agtagttggt ggcactgcag gagtagttga aggcactgca cagggaatta aggaggcagt
     2881 tgaagacact aaagaaggag ttgaagatac taaagaaggt gttaaagaaa cggcaagaga
     2941 ggcaacagac acagacatgt atacatcctc atacgaagaa acgaaaaaca gagaatataa
     3001 agaagctggg gaagaattgg aggatgcagg agacaaggtt aaagccggcg caaaagcagt
     3061 tgcaagcaaa gtcaaagatc ctgacaagga tttagatagt gagtacgaaa aagaaaaggc
     3121 agaagaaaaa atggattaga attagtccaa tcaattttta tgccgataag ttacacggtg
     3181 aattaagaat actggattgg ttattttatc aattatgtgt taatgcatgg aatagcgttg
     3241 cagtggatga aaaaattttc taatattat
//
LOCUS       DASPFX010000096         2918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_821069, whole genome shotgun sequence.
ACCESSION   DASPFX010000096 DASPFX010000000
VERSION     DASPFX010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_821069"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..836
                     /gene="tfb"
                     /locus_tag="VD694_02145"
     CDS             <1..836
                     /gene="tfb"
                     /locus_tag="VD694_02145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HXW11533.1"
                     /translation="TNCGMVSSNDKAFQTSTAEWRAFDHRQMTDRSRVGMPMTLTRHD
                     KGLSTVIGIPNKDASGKELDDSMRSMMQRLRTWDHRIQVSSPTDRNLARAFQRLEMLR
                     GKLGLPDNVIEKAAYVYRKAQRLGMVKGRTIAATLSASIYVASREAGVPRTLAEIASL
                     SNISHKELSRVYRLIVFNLDLKVPMIDPVKCIAKIANKMEVSEKTKRHAISYMHNVVA
                     TGIAAGKDPMGIAGAVLYLSCLQNDEHRTQLDFAAASGVTEVTLRNRCKELHTKLPQL
                     N"
     gene            1449..1781
                     /locus_tag="VD694_02150"
     CDS             1449..1781
                     /locus_tag="VD694_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11534.1"
                     /translation="MEKLIMRYLIGLPVDATNWQKRMNKKYGKLSNIVKNINYDIKHG
                     ANKEQIKSLFSRIRKDSFFHDLQKSKESMDRLDNLERELHIFQNTHSVRAVLQSLSSN
                     ADNQFVHS"
BASE COUNT         1038 a          514 c          568 g          798 t
ORIGIN      
        1 gtaccaattg cggcatggtt agttctaatg acaaggcatt tcaaacgagt actgcagagt
       61 ggcgtgcttt tgatcataga caaatgacag atagaagtag agtaggaatg cctatgacac
      121 taacacgcca cgataaaggc ctttccacag tgattggcat accaaataaa gatgctagtg
      181 gaaaagaact tgacgattca atgcgatcaa tgatgcaaag actaaggact tgggatcata
      241 gaattcaagt aagttcacca accgacagga accttgcaag ggcatttcag agacttgaaa
      301 tgctaagagg aaagttggga ctacctgata atgtaataga aaaggcagcc tatgtctata
      361 gaaaggcgca gcgactggga atggttaaag gaagaacaat agctgctaca ttatctgcat
      421 ctatttatgt tgcctctaga gaggccggag ttcctagaac attggcagag atagcatctc
      481 ttagtaatat ttcacataaa gaactctcaa gggtgtatag actcatagtc ttcaacttag
      541 atttgaaggt cccaatgata gatccagtaa agtgtattgc aaagattgca aataaaatgg
      601 aggtaagtga gaaaacaaaa agacatgcta taagctatat gcacaatgta gtagcaacag
      661 ggatcgcagc aggaaaagat ccgatgggaa tagcaggagc cgttctttac ttgtcgtgcc
      721 tacagaacga tgagcataga actcagttag actttgcggc tgcctccgga gtaacagaag
      781 taactctaag aaatagatgt aaagaactcc atacaaagct tcctcaactt aattagtgca
      841 aataagtcct gagggaaaaa gcggatctat aaacatagcc caacaattga ttcgtatact
      901 ccattagcta ttgttgataa tctaaatctc aatacttttt tatgttcaaa aataccttgc
      961 aaatatatga ataagacaac catcaaagca tacgcttgaa tagagggaag gaggctgcca
     1021 aactgaagaa tatacatgaa caacttgatg gtcaattttt gacatctact agtcatataa
     1081 tacaaattat acagtaattt ggtaaatagg actagataat tattacataa ttatggaata
     1141 tagtataata cggatattat gaaaagtcgt tttaacatca agactgaaaa tcaacataaa
     1201 gcttatgatg caccaatctt atgctcatct tgcgcaaaaa atcccttatc cagttaggaa
     1261 aaaagtaatt gcatatgcat cataatattt ttgaattgcg ttcggatctg cttttctatt
     1321 cttctgaggg tataggaaag caagaaacaa gaattttata aggttatata tgcttgtcac
     1381 atgtacgtat acagacgaaa tttttgaccc aaaatagttt ccctttaata aaatggcatg
     1441 aagagcatat ggaaaagttg attatgaggt atctaattgg acttccagta gacgcgacca
     1501 attggcaaaa acgaatgaac aagaagtatg gcaagttgtc aaatattgtt aagaatataa
     1561 attatgacat aaagcatggt gcaaataagg aacagataaa atcactattc tcaagaattc
     1621 gtaaagactc attcttccac gatctccaga agagcaaaga gtcaatggat cgacttgaca
     1681 atcttgaaag ggaattacac atatttcaaa atacgcatag cgttagagca gtattgcaat
     1741 cgctctcaag taatgcagac aaccaattcg tacattcata aacaaccgta tcctgagata
     1801 cgaaaggtaa agttcttcat ggattgctct gacaaatagt tctctacgga gctgagttaa
     1861 gtacgtacaa actttctcgt gcaccacatc attaagaaac ccatgaaata tatgctgatt
     1921 gctgataatt tctatactcc caaagcataa cggcttcgtc ggagatggtt aaaaacctca
     1981 tcggcttcag gtttttgtgc aaaggctctc aatacatatt tgtcaatgga tttgacagct
     2041 tagattagag tatggcatcc aatgggttga acagctacta catttcatta ctaatactga
     2101 gttatcacat tttttatact cgttagcaat tagtacctta aataccatta taaatataca
     2161 caaagtgagg acaattgaaa atcaattttt caactttctt tggcaagaaa caaaagagcg
     2221 ctgaacacaa ctgtaaatca tgtggcgtca aattcgtgac agatcaagat ttggagaagc
     2281 ataacgaaat agcacacaaa aaatagagaa aactggtcgg agtacaaatt taattactcg
     2341 aaaatcgggc acacgagcag aagcaacatg aattgaacct tacaactgga acagtaccag
     2401 gattacacga gcacttctgt tgctaggagt gtaaactata aaaaaggaat ccaagttcac
     2461 ttttctgacc ttattgcaat ggaagatcca ttatggttac catttggctc atttcgtaat
     2521 agtatagtag acaaaagctt atttaactga agggaaaatt tccagaattc ataatcaata
     2581 gccaaaaaca gttggagttg atgagaggca caggctccac acctgtgcag tatccttcgt
     2641 gggcaatcct atctttggat tacatgggac gagttaggca cccatgttgt gctccgatat
     2701 taaagatgga ttaaagccaa tatgcgttgt ggacttggct gctactctgt attggttgca
     2761 aacggattat gggaaataac tagatagata tagatcgatg attgtcgatt taacatcact
     2821 aatttactgc cgccccaaat ttacaacggg aattcgtcct aacattcgct attgcaatta
     2881 cattcgtaat tatctcatgt atctgaagat gcctcaac
//
LOCUS       DASPFX010000097         2326 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1890291, whole genome shotgun sequence.
ACCESSION   DASPFX010000097 DASPFX010000000
VERSION     DASPFX010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1890291"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VD694_02155"
     CDS             <1..300
                     /locus_tag="VD694_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HXW11535.1"
                     /translation="RYGLTQHSIQGLSPEAEVLPQQIQQVIELARGRGIDTIYSEDLI
                     DPRLANVIAQEIPNSKVLVLSPIEGINKEEQNAGEGYLNKMRENLEILKIGLKCK"
     gene            complement(1841..2122)
                     /locus_tag="VD694_02160"
     CDS             complement(1841..2122)
                     /locus_tag="VD694_02160"
                     /inference="COORDINATES: protein motif:HMM:NF015069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HXW11536.1"
                     /translation="MVDFLLPIIGFAATCFAVSSTVPQIRKALKTKRSDDVSIRFIIV
                     LIIGLSLWVVYGYGKNDIVLIIGNSTAVALNTFMLYLKAKYSRNPLNEE"
BASE COUNT          770 a          443 c          387 g          726 t
ORIGIN      
        1 agatatggtt tgactcagca cagcatccag gggctttctc ctgaggcaga agttttacct
       61 caacaaatac aacaagtaat agagctagca agaggacgtg gtattgatac aatctattca
      121 gaggatttaa tagatccccg attggccaat gttatcgctc aagagattcc taatagcaag
      181 gttcttgttt tgagtccgat agaaggtatt aacaaagaag aacaaaatgc cggtgaagga
      241 tacctgaata agatgaggga gaatctcgaa atacttaaaa tcggactcaa atgcaaataa
      301 tacaacaatt gatagtaaaa tctacgctga gttttctgct atatccatgg tggcattaga
      361 gtgggagcag atattaatgc ttgacgactt ccgaatcttc atattaccaa tcgattagct
      421 cgttaacccc cattccttag tcctcaatgc tgctttatga actcaggtcc tccaataggc
      481 tcattggaga gaaaatttgg catgactgat cattttaaca aagtgtcaca ttgcaggttt
      541 tgccattatt acatatggta gctatagttt gtgctgttct acagcatgca taattgcacc
      601 aaaagatgcc attacctatg aaacaacaaa ttcagcgctt taccaagatg ttctagcagt
      661 gaattagtct tgctgcatga gatgactgat acgaacacca taaatgtcat aaatgcaaaa
      721 atatatgtgc gattgaaact cagaacggac cttatgaagt caaatgcgac ctattcaatg
      781 acaggataca agttatctat gaagtggatc ctcttgcctt aaatattatt tccttaattc
      841 tcatacacat atcacaatgt tgtggacaat tgtcatgaat gcatacaact tttgtacaat
      901 tacaattaaa acaccatagt tctttagctt ggaaggaatc cataagacac tagactagta
      961 tgtaacctga tctaataact gtttcagaat tacacttgat aaacttcatt agaatctgtc
     1021 aaaataatca tcagaaaagc cactagccac caagtctaaa ttttagtgta ccgaactaag
     1081 gccaatctta attgcaggac attgacttca aatcgaaact atttactctt ctactactaa
     1141 attcatgctc atgaggaaac ctttatccag tttaactttt gttactcata ttattacaaa
     1201 aagtacatgt ctcaaaacta ctgttagtct ctatgactac tattttccat tacttcaata
     1261 aaatacgacg tcgtgaatct gaatgttgaa aaccgaagaa agcacaacca aataaaagca
     1321 ttcctttggc attaagactc gtgttataaa aagaggacaa ctatgagtct gctttgtaat
     1381 tcagtcatct ttcatcctca ttaaatagca ttgcatgttt ttacatattg ttcgtcaaat
     1441 ctttcagcag tgtttatcga tattatagaa aaatgctctg tgcgcgctat aaggagcctt
     1501 ttattaatag tagtcatttt ctttatctcg ggtagattca gcgaagacca aaaggataga
     1561 gcccccaggt gagccctaca ttcagtccgc tacttttcat ttcataacaa gggatgaatc
     1621 gctgaatcct tcctgcgggc tctactaaaa ataacgtgtt tcaactctaa aattgactta
     1681 gctattaaac taattgtcat gcatgctgta taaaatgggt gtccgcagat atacgaataa
     1741 aggtttggtt agtggattgt acaatactaa ggaaaaccaa tacagaatag gacacttgaa
     1801 aaattgataa catcatgacc attaatattt accaatccat ctattcttcg ttcaacggat
     1861 ttcttgaata ttttgctttc aaatataaca taaaggtgtt caacgctacg gccgtggagt
     1921 tgcctataat taatacaata tcgtttttac catagccata aacgacccat aatgataggc
     1981 caattatcag aactattatg aatcgtattg atacatcatc tgaccttttt gtttttaacg
     2041 cctttctaat ttgaggaacg gtacttgaaa ctgcaaaaca agtagctgca aagccaataa
     2101 ttggcaacaa gaaatctacc atgtcttccg tctacctatg tttttgtatc cctattcttt
     2161 ataaaattaa ggcgtctgta aggccctttt gaattgcaaa atcgcaagtc agatcacagg
     2221 agattttatg ttagctgtaa ttcatgaatt cttcctaact accttcattt tctgacatat
     2281 tacagtaata ggttagctca cttgcaatag agtactatta gtatta
//
LOCUS       DASPFX010000098         5754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_404101, whole genome shotgun sequence.
ACCESSION   DASPFX010000098 DASPFX010000000
VERSION     DASPFX010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5754
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404101"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VD694_02165"
     CDS             <1..576
                     /locus_tag="VD694_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HXW11537.1"
                     /translation="VDLKGVLEYFEEKAEEIRSGANRYYAMLQVIRKLNQFIDRDKQP
                     HGLNLAKMFSSILLKRNFDSVGSWHVRSLFLGMMHFQDKYNEDLERLQRCDIHYLTPD
                     LRIVPFCAFNVIPEWYRDRIQKKYSIPVEEWEKAHGQTLEAGLYRGIMRRGKPEAQMG
                     CAMSEMHKAAAESMANDDHKAVELRNGMAGA"
     gene            704..1564
                     /locus_tag="VD694_02170"
     CDS             704..1564
                     /locus_tag="VD694_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HXW11538.1"
                     /translation="MSNMKYIQLESQGEVAILRINRPEALNAMNIDVISELSQTVDKI
                     GADESVKVIILTGAGEKSFCAGADISYMVDIDPITAEKYASSAQSVLNKIERIEKPVI
                     GAINGYALGGGCELAMVCDIRIASSNAKLGQPEVTIGIPPGWGGTQRLMRLVGPAKAK
                     ELVFTGRMIPAEEAFQLGLVNNVISLTANDNLPPEVTADDKEKQKERNNQIAKLLNNK
                     LMNECIAMAKQISKNSFNAVKVSKMLVNRGMDADLDTGLRLEIYGWSLCFAHEDRKKM
                     MSDFLNKSKK"
     gene            complement(1596..2552)
                     /locus_tag="VD694_02175"
     CDS             complement(1596..2552)
                     /locus_tag="VD694_02175"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: protein motif:HMM:TIGR00191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006566 - threonine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HXW11539.1"
                     /translation="MKKTLDFCKAKAPSSTANLGPGFDVFGLALDLFYDTVSISKLAT
                     KNGKIRITLQNYDTMIPSVAKENTASLSVMKIAKKYKIKNDLNINIIKGVPVGLGLGS
                     SAASSAAAVTAFDELFRCELTENELLDFAAEGEVSSAGVKHYDNVVASLFGGFAIVRT
                     HPTLQFSRINAPKDLILVVCVPKIVTPAKKTKIARSMIPRTIALEDHTKNLANACMMV
                     SGFQYQDTKLLASGINDIIVEPARKNLIPGYVKIKSNALRSGALAVTISGAGPSMIAF
                     TNSINDAQKIGKSMEQAFADSKIESHAYVCGVSRGAKVVSKH"
     gene            complement(2561..3319)
                     /locus_tag="VD694_02180"
     CDS             complement(2561..3319)
                     /locus_tag="VD694_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HXW11540.1"
                     /translation="MQTIFVTGTAGAGKSLLTSKLVQWYKDNSFYPISLNLDPGVISL
                     PYEPDVDVRNHIDIEKIMSQHDLGPNGALIMAADMIATKLDEIQEEVYDLNPDFVIVD
                     TPGQIELFIFRASGPYFVSNFQSDSKINIFTFDGILASTSPINFISIALMATSVRLRL
                     NISQIDVMTKRDLVIDKLEDILRWSTRSSLEDSLHNEKNIEYSILSKDLLQALYKNKL
                     MQNPILVSSLTMSGMVNLTAALSRVLNLGEEKGD"
     gene            3398..4447
                     /locus_tag="VD694_02185"
     CDS             3398..4447
                     /locus_tag="VD694_02185"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HXW11541.1"
                     /translation="MKWRLVAVAVSLIPFLLLFTFTPVSPADVFSVGPLPFLLSVSAV
                     MVRILLQAYRFRYFINHFIGPNYSTTLKTMNARIAGEFVTQTTPSFIGGEIVRIAWLI
                     KNGVPAGKAAWVATAEIIADVFAGSILAFIAGGMAIFGGGSFIGIMVIVVAIPTFAFW
                     FLVVVVSANRNMQLPKFALRLLNRFLSQERSDRLINSTNIALEDLCKMSRENFTSFHS
                     VKVLSVGMAITFVAFAFQGISFLVLADTVGQHVGFFQSFMATSASTALSTLPITIGGS
                     GLAELGIWAYITNISTIPNLTDVLNSSQLSVIIAWRIATYHVPLIIMWIALMRITIGK
                     DSIANQIKSKNLDNS"
     gene            4493..5287
                     /locus_tag="VD694_02190"
     CDS             4493..5287
                     /locus_tag="VD694_02190"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HXW11542.1"
                     /translation="MNKLKGKTVVVTGASSGIGRSTVLDFAQQQVKAIILVSRNKERM
                     SHVSTEIGHKCESMIFPCDVSNNSEVSKMAKDVLSVYDHIDILVNNAGIGILGKVADQ
                     PIEEIEQVTKTNYLGMIYCTKVFLDSMLRKKSGHIINVASLAASFGIPGLAAYCGSKF
                     AILGFSESLKHELHGTGIKVTVVSPIGVKTNFFQHPSFRNKFKNKERFYLEPHSVSKA
                     IIRASTSNRLEIVVPFYMRGGIWLKNTIPFMVNPIVGASFRRMLDN"
     gene            complement(5298..>5754)
                     /locus_tag="VD694_02195"
     CDS             complement(5298..>5754)
                     /locus_tag="VD694_02195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11543.1"
                     /translation="RSKAQVSSKSTKDGSTGNDESLPKWAEDEIKSVQFGEPEILTRS
                     GYILAVYEDVWKVDLQIYEALSDGRTIIEGLDVPKNLKISDFLKGFIYEFKIRMFKGD
                     LSSKLVELLKSKYNLEMNAIYKFELEDLQLMDVESDVQASTSTADDEDE"
BASE COUNT         1732 a         1046 c         1132 g         1844 t
ORIGIN      
        1 gttgacctta aaggtgtttt ggaatatttc gaagaaaagg ctgaagaaat aagatccggt
       61 gcaaacaggt attatgccat gctacaggtc attagaaaac taaatcaatt cattgataga
      121 gacaaacagc ctcatggatt gaaccttgca aagatgtttt cgagcatctt gttgaaacgt
      181 aattttgact cagttggttc atggcatgtt cgttccttgt tcttaggaat gatgcacttc
      241 caagacaagt ataatgaaga tctagagcga cttcagagat gtgacattca ctatttaaca
      301 cctgacttga gaattgttcc attctgtgcg tttaacgtaa ttccagaatg gtatagagac
      361 agaatccaaa agaaatacag cattcctgtt gaagaatggg aaaaagctca cggacaaact
      421 cttgaagctg gtttgtaccg cggtatcatg agaagaggca aacctgaagc acaaatggga
      481 tgtgccatgt ctgagatgca caaggcagct gctgaatcaa tggccaatga cgaccataag
      541 gccgttgaat taagaaacgg aatggctggc gcctaaatag ttcattcatt ccatttctct
      601 tttgttttta tttttattat tagtgtaatc gatatcttgt agctcttagt tttggactta
      661 ttttagaaca agatttaatt gaacgctgtt tccacttttc tcaatgtcta atatgaaata
      721 tattcaactt gagtctcaag gagaagttgc tatacttcga atcaatagac ctgaagcttt
      781 gaacgcgatg aatattgatg tcatatcaga gctttctcaa acagtggaca aaataggtgc
      841 cgacgaaagt gtcaaggtca taatattaac aggagctggt gaaaaatcat tttgcgccgg
      901 tgcagatatt tcatacatgg ttgatatcga tccaattact gcagaaaaat atgcttcttc
      961 agcacagtct gtcttgaata agattgagcg tatagaaaag ccagtcattg gagcaattaa
     1021 cggatatgcg cttggaggag gctgcgaatt agctatggtt tgcgatatca gaatagcatc
     1081 cagtaacgca aagcttggac aaccagaagt aacgatagga attccgccag gatggggtgg
     1141 aacacaaagg ttgatgaggt tggtgggacc agctaaggct aaggaactag tatttactgg
     1201 aaggatgata cctgcagaag aagcatttca attaggtctg gtaaataacg tgattagctt
     1261 gactgcaaat gataatctac cacctgaagt tacagctgat gacaaggaga agcaaaagga
     1321 aaggaacaat cagatagcaa aactactaaa caacaaactg atgaatgagt gcattgcaat
     1381 ggccaaacag atttcaaaga atagtttcaa cgctgtaaag gtgagcaaaa tgctagtaaa
     1441 cagaggcatg gatgcagatc tcgacacagg actcaggttg gaaatttacg gatggtcctt
     1501 atgctttgct catgaggata gaaaaaagat gatgtctgat tttctcaata agagcaaaaa
     1561 atgacatctt ctattatttt ccaattcatg tggaatcaat gttttgaaac tactttcgcc
     1621 cctctgctga ctccacaaac atatgcatga ctctcaattt tagaatcagc gaatgcttgt
     1681 tccatcgact tgccaatttt ctgggcatca tttattgaat tcgtaaatgc aatcatggac
     1741 ggtcctgcac cacttattgt tactgccagt gcaccagagc gcaaggcatt tgattttatt
     1801 ttaacgtaac caggaataag gttttttctg gcgggttcca caataatatc attgatacca
     1861 cttgctagaa gctttgtatc ctgatattga aagccgctca ccatcataca tgcattggct
     1921 aaattctttg tatgatcttc aagtgcaatt gttcttggta tcatacttct cgctattttt
     1981 gttttcttag ctggggttac tattttggga acacaaacta caagtatcaa atcttttggg
     2041 gcatttattc gactaaactg aagggtggga tgtgttctta ctattgcgaa tcctccgaac
     2101 aatgaagcca caacattatc gtaatgtttt acacccgcgc tactcacttc gccctcagca
     2161 gcgaaatcta ataattcgtt ttcggttaat tcgcatctaa aaagttcatc aaatgcagta
     2221 acggcagctg cactggaagc ggcactgctt cccaatccaa gtcctactgg tactcctttg
     2281 ataatattga tgttaaggtc atttttgatt ttgtattttt tagctatttt cattactgat
     2341 agacttgccg tattctcctt agccacagaa ggtatcatgg tatcataatt ttgtaatgtg
     2401 attcttattt ttccattctt tgttgccaat ttgctgatag atacagtatc atagaaaaga
     2461 tcgagagcca gtccaaagac atcaaatccc gggcctaaat tggctgttga tgatggggcc
     2521 ttcgctttac aaaaatccaa tgttttcttc aaacccaatt ctaatctcct ttttcctcac
     2581 ccaaattaag tactcttgaa agcgccgcag taaggttcac cattccactc attgttagac
     2641 ttgaaacaag aattggattt tgcattagtt tatttttgta caatgcctgt aatagatctt
     2701 tactcaagat tgaatactca atattctttt cgttatggag tgaatcttcc agagaggatc
     2761 tggtggacca tctaagtatg tcttctagct tgtctattac cagatctctt tttgtcatca
     2821 cgtcaatctg agaaatattc aatcgaagtc ttacagatgt tgccattagt gcaatagaaa
     2881 tgaaattaat tggtgaagtt gacgcgagaa ttccatcaaa ggtaaatatg tttattttac
     2941 tatctgattg aaaatttgaa acaaaataag gtccacttgc cctaaatatg aaaagttcta
     3001 tttgaccagg agtatccact atcacaaaat ctggattcag atcataaacc tcttcttgga
     3061 tttcgtctag ttttgtagca atcatgtctg cggccataat gagtgcgcca tttggtccca
     3121 ggtcatgctg agacattatt ttctcaatgt cgatatgatt tctgacgtca acatcaggtt
     3181 catagggtaa tgaaataact ccaggatcaa gattcaaaga gattggataa aaactattat
     3241 ctttatacca ctgaactaat ttagacgtaa gaagtgattt tccagcccct gctgtcccag
     3301 tgacaaaaat agtttgcaaa caaacttcaa agaaagagtg aatatattaa ttctattgat
     3361 tattatatga ccttctatta ttttgaattg agtaggcttg aaatggagat tagttgcagt
     3421 tgctgtgagc cttattccat ttttattact atttacattt accccagttt caccagctga
     3481 tgtcttctca gtggggccgt tgccattcct cctctctgtc tcggccgtta tggttagaat
     3541 tttgttacag gcctataggt ttaggtattt tattaatcac tttatcggtc caaattatag
     3601 cacgactctc aaaactatga atgcgagaat tgccggggaa tttgtcacac aaaccacacc
     3661 ttcttttata ggaggtgaaa tagtgagaat tgcatggcta attaagaacg gagttccggc
     3721 gggcaaagct gcttgggttg ctactgcaga aattattgct gatgtctttg caggtagtat
     3781 tttggcattt atagcgggtg gtatggccat ttttggtggt ggttccttta ttggtattat
     3841 ggtcattgtg gttgctattc caacttttgc tttttggttt cttgtcgttg tggtatctgc
     3901 aaacaggaac atgcagttgc caaaatttgc tctcagattg ttaaatagat tcctgtcgca
     3961 ggaaagatcg gatcgtctaa taaattcaac aaatatcgcc ttggaagatc tttgcaaaat
     4021 gagcagggaa aattttactt cttttcactc agtaaaggtc ctttccgtag gaatggcaat
     4081 aacatttgtc gcttttgctt ttcaaggtat ttcgtttttg gttcttgctg atactgttgg
     4141 tcaacacgtc ggatttttcc aatcatttat ggccacttca gcgtctactg ctttatccac
     4201 attacctatt actatagggg gatccggctt ggcagaattg ggaatctggg cgtatatcac
     4261 aaacattagt acaattccaa atttgacgga cgtacttaat tcctcccaat tatccgtaat
     4321 cattgcttgg agaattgcta cttatcatgt gcctctcatt ataatgtgga ttgctctgat
     4381 gagaattaca atcggtaaag attctattgc aaatcagata aaatccaaga atttggataa
     4441 cagctaaata atagaagagg aatgatcaca actttatcga ggaggatttg ctatgaataa
     4501 attgaaaggg aaaacagttg tagtgactgg agcatcttcg ggtataggga gatcaacagt
     4561 attagatttt gcgcaacaac aagtcaaggc aattatactt gtttctagaa acaaagaacg
     4621 tatgtcccat gtttcaacag aaattggtca taaatgtgaa tccatgattt ttccctgtga
     4681 tgtatcgaat aattctgaag tatcaaagat ggccaaggat gtgctttcag tttatgatca
     4741 cattgacata ttggtaaata atgctggaat tggaatattg ggaaaagttg cagatcaacc
     4801 gatagaggaa attgaacaag taaccaaaac aaattacctt gggatgattt attgcacaaa
     4861 ggtatttctt gattcaatgt taagaaaaaa aagtggacac attataaatg tggcatcact
     4921 tgcagccagc tttggaattc ctggcttggc cgcatattgt gggtcaaaat ttgcaatact
     4981 tggattttcc gaatcactca aacacgaatt acatggtact ggaatcaaag ttacagtggt
     5041 aagtcctata ggagtaaaga caaacttttt tcaacatcct tcttttcgta acaaattcaa
     5101 aaataaggaa cgattttatc tagagcctca ttctgtttcc aaagcaatca ttagagcatc
     5161 aacgtcaaat aggttggaaa ttgttgtgcc attttacatg agaggtggaa tatggttaaa
     5221 gaatacaata ccattcatgg taaatccaat tgttggagct tcttttagaa gaatgttgga
     5281 taactgatac tcatggttta ttcatcctca tcatcagcag tactggttga tgcttgtaca
     5341 tctgattcaa cgtccatgag ctggagatct tccaattcaa acttgtatat agcgttcatt
     5401 tcgagattat actttgattt taataactcg actagcttgg agcttagatc gcctttgaac
     5461 atccttatct taaattcgta aatgaatcct tttaaaaagt cagaaatttt caaatttttg
     5521 ggtacatcca aaccttcgat tatggtccgt ccgtcagaga gagcttcgta tatttgcaaa
     5581 tcaactttcc acacatcttc atagacagcc agtatatatc ctgatcttgt tagtatttct
     5641 ggctcaccaa attgtaccga ctttatttca tcttcggccc atttcggtag agattcatca
     5701 tttcctgtac tcccgtcctt agtgcttttg ctagaaactt gtgctttaga cctt
//
LOCUS       DASPFX010000099         4125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_124560, whole genome shotgun sequence.
ACCESSION   DASPFX010000099 DASPFX010000000
VERSION     DASPFX010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124560"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..893
                     /locus_tag="VD694_02200"
     CDS             234..893
                     /locus_tag="VD694_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HXW11544.1"
                     /translation="MDLQNSGYSKYVLDHVKKGTTTCALTCSDGVVLAADTRASAGFF
                     IADRHVMKIQKVDRHLGMTIAGGVADAQNLVDIMRYNANIFRISNRKLMPVKSAARLC
                     SNVLFNQRYFPFYVQIIMAGYDSEKVARIYNIDLFGSMTTEKFISTGSGSPVAYGYLE
                     TEFRDNLKVDDGYKIAIRAIAAAIRRNAGTGDGINVVIIDKEGFRELPKEAKNAVEVS
                     Y"
     gene            complement(1157..2734)
                     /gene="tgtA"
                     /locus_tag="VD694_02205"
     CDS             complement(1157..2734)
                     /gene="tgtA"
                     /locus_tag="VD694_02205"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: protein motif:HMM:TIGR00432.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HXW11545.1"
                     /translation="MSFEVRYTDLAGRIGQLKTMHGNLETPAFLPVVHPVDQVIRPKF
                     MKDLGFNAIITNAYITLKRHKEKAIQKGIHELVDFDGVVMTDSGGYQVLEYGDIEIGP
                     ETMAKFQFDIKSDLPVILDRPTGYRLDYRRATDFVEKTLLNARSTVSMVKDQFGCQNQ
                     LAVEEMCDIKRPIWVGTIQGAEHLDLVKYSTKELAKIGFDFFALGSPVEVMEAYDFRL
                     LTQMILTAKELIPHKPLHLFGAGHPLAISLAVALGCDTFDSASYILYARDNRYITPYG
                     TAKLNELTYLPCCCPVCNSLSANEFRNMEHSTRTIELAKHNLYVLKLEINMLKQAIMD
                     GRLWEYVVQKARSHPKLMEALVYIKDHPIIESGTKRFKSKAAFFYDSIDCYRPEAKQY
                     RDMVAKFKSSKSRVLFYPEQDIKPFYSTISYSKLVKEYDEFQICSYSVFLGIIPVELC
                     DIYPAAHNLSNKPHSNDGDGTDKLHNGIIRSFNAFLNFNDFKEVIIYANKAFRTYLER
                     SPLNHSNIVVLEYEDDN"
     gene            complement(2737..3150)
                     /locus_tag="VD694_02210"
     CDS             complement(2737..3150)
                     /locus_tag="VD694_02210"
                     /inference="COORDINATES: protein motif:HMM:NF026244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsm family RNA-binding protein"
                     /protein_id="HXW11546.1"
                     /translation="MSTVLIRKFGEEAIQFLGKKVSVETSDQRVYKGTLTGIDERLDL
                     VLNDVEGTGILKMIINGAYVKEIKLMEKPFDFKALSERLSKVFPGLVRIREDVGAIIV
                     MDKIKVTETGVEEGSGLAADRVRVIYDEFMRENRK"
     gene            complement(3307..3894)
                     /locus_tag="VD694_02215"
     CDS             complement(3307..3894)
                     /locus_tag="VD694_02215"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW11547.1"
                     /translation="MDSNISNSFRLVITGNPGVGKHTAAFELGKILDLAIIDINELAA
                     KHHAFLVPPNGEIDSKKIATIIESRLGESQRTVIVGHLAPYVLKREWIDLAVVLRRSP
                     YAITSTLENRKYSAKKIKENVASEILGVTFYDSVQCFGIEKVAELDTTQSTPVEICEN
                     IISLLNAKTTRKVGVVDWLSLVYEKGDVGRFLEYS"
BASE COUNT         1240 a          866 c          759 g         1260 t
ORIGIN      
        1 tgactatccc aaaccttatc aaacagtgtc cttcccatca ataccgcaat ttcaatctac
       61 tcgaatataa ttattaggag tacaccttga attgaacaga tacctcgaat gaagaatttt
      121 agagtccgaa gcataagagg aaattagatg ttgacttgct caaaaccaat ccagtgtctt
      181 gaaagacaga tttagacaat acttaaatct agtatctgtt ccatacgtgt aggatggatt
      241 tacagaatag cggatattca aagtatgttc tagatcatgt taagaaaggt actactacat
      301 gcgccttaac ttgcagcgat ggagtagttc ttgctgccga cacaagggca agtgcgggat
      361 tttttatagc agacagacat gtcatgaaga ttcaaaaggt tgataggcat ttaggcatga
      421 caattgctgg gggcgtagct gacgctcaaa atctggtcga catcatgcgg tataatgcca
      481 atatatttag aatttcgaac agaaaattga tgcccgtgaa atctgccgct agactgtgct
      541 ctaacgtact cttcaaccaa agatattttc ctttttacgt gcagatcata atggctggtt
      601 atgactccga aaaagtagct cggatttata acattgatct gtttggttca atgactactg
      661 aaaagttcat ttcaactgga agtggctctc cagttgcata cggatatctc gagactgaat
      721 tccgggataa cttgaaagtg gatgatggtt acaaaattgc tatccgcgca atagctgcgg
      781 ctatcagaag aaatgcgggc acaggcgacg gtattaacgt agtcatcata gataaggagg
      841 gttttcgaga actcccaaag gaagctaaga atgctgttga agtatcctac tgaacatatc
      901 aagatgacat aaatagatat tacccctcga atatgcggtc cacccgagtt gaatttaccc
      961 ggatactatg gaattggatg ggataccccg catgaacaag tattattgct gagcgtgctt
     1021 ttctacttga cgtactccag caattgtatt tccagaatca cgtcaaaatt gtctcgtcct
     1081 tattcttggc acgtgtaata gaaaataaga cgtaaactgc tctgcaggtc aagtcacgtt
     1141 tgctactcct aatttatcaa ttgtcatcct catattcaag aactactata ttgctatggt
     1201 ttaatggact tctctccaaa taggtcctaa aggccttgtt cgcgtaaatt atgacttcct
     1261 taaaatcgtt gaaattgagg aatgcgttaa aggacctgat tattccgtta tgcaacttgt
     1321 ccgtgccatc gccatcatta gaatgaggct tattcgatag attatgtgca gcaggataga
     1381 tatcacacaa ttcgactgga attatgccca agaatacact atatgagcaa atttggaatt
     1441 catcatattc cttgacgagc ttgctataac taatagtgga ataaaatggc tttatgtctt
     1501 gttctggata gaacagcact cgtgacttcg acgacttgaa cttagcaacc atatctctgt
     1561 actgctttgc ttctggtctg tagcaatcta ttgaatcata gaaaaaagca gctttacttt
     1621 tgaatctctt ggtcccagat tctataattg gatgatcttt tatgtaaacc aatgcctcca
     1681 tgagctttgg gtgtgagcgt gctttctgta ccacatattc ccacagcctg ccgtccatta
     1741 tcgcctgttt caacatattg atctccaatt tcaagacata caggttatgt tttgccagtt
     1801 caattgtcct agtactatgt tccatattgc gaaattcatt tgcagaaaga gaattacaaa
     1861 caggacagca gcaaggaaga taggtcaatt cattaagctt agcagtccca tagggagtaa
     1921 tgtatctatt gtcacgtgca tataatatat aggaagcaga atcaaaagta tcgcatccca
     1981 gggccacagc caaggagatg gcaagggggt gaccagcccc aaaaagatgc aatggtttgt
     2041 ggggtatcag ctccttcgct gtaaggatca tctgcgtcaa taagcgaaaa tcatatgctt
     2101 ccatgacttc gacaggactt ccaagcgcaa aaaaatcaaa accgattttt gcaagttctt
     2161 tagtggaata cttgactaaa tcgagatgtt ctgccccttg aattgttcca acccaaatcg
     2221 gcctctttat gtcacacatc tcttctacag ccaattggtt ctgacaaccg aactggtctt
     2281 taaccatact tacagtagat ctagcattta ggagagtctt ctccacaaaa tctgtagctc
     2341 gccgataatc caacctatag ccagttggcc tgtctagtat cacgggtaga tcacttttga
     2401 tgtcgaactg gaattttgcc atagtttctg gtccgatttc aatatcacca tactccaaca
     2461 cctgatagcc tcccgaatca gtcatcacta ctccgtcaaa atcgactagt tcatgtatac
     2521 ccttttgtat tgctttctcc ttatgacgct tcagagtgat atacgcattg gtgattatag
     2581 cattgaatcc taaatctttc ataaacttgg gtcgtattac ttgatcaaca ggatgcacaa
     2641 caggaagaaa agctggtgtc tctaggtttc catgcattgt cttcaattgt cctattctac
     2701 cagctaggtc agtatatctg acctcaaagg acaaatttac ttcctgttct ccctcatgaa
     2761 ctcatcataa atgactctaa ctctatcggc tgctaaaccg gatccttctt ctacaccggt
     2821 ttctgtcact tttatcttat ccataactat aattgcacct acgtcttctc taattctcac
     2881 aagacctgga aaaaccttgg aaagtctttc ggaaagggct ttaaaatcaa agggcttctc
     2941 cattagctta atttccttca catatgcacc attgatgatc atctttagta ttccagtacc
     3001 ttcaacgtca ttaaggacca agtcaagtct ctcgtcgatc cctgttaaag ttcctttata
     3061 tactctctga tcagaggttt ctacagaaac ctttttacca agaaactgaa ttgcttcttc
     3121 gccgaatttg cgtattaata ctgtggacat gatctttaca ccggctttat agacttggat
     3181 atatatattt gaattacaat gaaagacctg ggctaggaag tatcataaga atacaaaata
     3241 actaattccc ggaccaaaat tgatcaactc atagtaacta atgaatgata ggacagtctt
     3301 gaataattag gaatattcta gaaatcgtcc tacgtcgcct ttttcgtaaa ccagggataa
     3361 ccagtctacg accccaactt ttctagtcgt cttagcattt aataaagaaa ttatattctc
     3421 acaaatttcg acaggggtag attgagtcgt atctaactcg gctacttttt ctattccaaa
     3481 gcactgaacc gagtcgtaga atgttactcc taaaatttcg ctcgctacat tttctttgat
     3541 ctttttggca gagtattttc gattttctaa agtgctagta atggcatatg gagacctacg
     3601 caatactact gccaagtcaa tccattccct tttcaggacg taaggagcta aatgccccac
     3661 aatgacagtt ctttgcgatt caccaagcct cgactctata atagttgcga tcttttttga
     3721 atcaatttct ccgttaggcg gcactagaaa tgcatgatgt tttgcagcca attcattaat
     3781 gtcaataatt gccaaatcta aaatttttcc tagctcaaac gccgcggtgt gtttaccaac
     3841 gccgggattg ccagttatta ctaaccgaaa tgaattcgaa atattactat ccaattaacg
     3901 acttgactat tatactttga attcattaat gaaattatct gttgagaata tacatttgtg
     3961 aaatattcga gataaacgaa atagagcact aggagcaaat attcaataac ttggtacgaa
     4021 agcacaaggg tgaaattatc ggatcgccaa ttatcatacg gcagatctgg aattgcgcaa
     4081 gacttccttt cataccaatc tagagagctt ttcttaaatc ataga
//
LOCUS       DASPFX010000100         5230 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1022071, whole genome shotgun sequence.
ACCESSION   DASPFX010000100 DASPFX010000000
VERSION     DASPFX010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5230
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1022071"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1644)
                     /locus_tag="VD694_02220"
     CDS             complement(<1..1644)
                     /locus_tag="VD694_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP cone domain-containing protein"
                     /protein_id="HXW11548.1"
                     /translation="MEQLSHDYSFQPEPRRDGILESASKRVRMIFSVMASPNRIDILR
                     ILNSKGPLTYSELKSLAGFKSKKESGKFAYHLRKLLRQSLVALNKAERRYTITNLGKL
                     VLSLARQIEERSIIESGKMYVRTSGHSIEEFNSHKIVQSLVREANMPLEQAHKITEEA
                     ENKVYKFQSAYLTSSLIRETVNSVLTEHGHEEYRNKLARLGLPSADIFEMLNDIGKAR
                     NGIDSIMTKAAQSILSEHLIIGTLSKDIADLHLAGEINISNSGIWGLVPDTLFLNIHE
                     IAKTGIDLKGKFLNVSRIPPINNINDLTTALPLLISLLSRESSTEVVLDGIVPLLSQM
                     ADSAGIATLLTRALMESSIAPTYSFNSLLGLPITTLNLDIDDQPNSKLINAILDSYNN
                     YINFTSVPRIGLSLRFGGKESLTLYSDRIASIIRTGGLVSLIRGGSRSLNGVHKSINS
                     TPFSGAIATLQSLSINLPRLAYQSNKDETYFRARLALMIKPALSAMSTRKKALMDLVR
                     KGMLSTLASSTPFMQLGTSNIVINLTGAKESVHDILGYDI"
     gene            complement(1747..2364)
                     /locus_tag="VD694_02225"
     CDS             complement(1747..2364)
                     /locus_tag="VD694_02225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11549.1"
                     /translation="MDRQRQQFQNELAGATSIVNNQLSRLKMLDKKFAAMDKDFRYQI
                     ALNIKAGNNSRAKALANELSNIRRVQRTTQNVGLALEVVVIRFSTINEFAMVMETINP
                     TIELVKDIQKEISNVVPSANGVISEVSSITSDVIINSNVKIDMNKVSAPIDSEAVSIL
                     NEVEGKLEDEAKVRLPEIPAAIETVKVSGKTEKPVRGEEKLLLEG"
     gene            complement(2503..3441)
                     /gene="pyrB"
                     /locus_tag="VD694_02230"
     CDS             complement(2503..3441)
                     /gene="pyrB"
                     /locus_tag="VD694_02230"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HXW11550.1"
                     /translation="MSNNYLFDRDIVSIRDFSRQELEYVFNATDKISSLKPSEKSILG
                     NGRILGYIFYEPSTRTRMSFEAAMASLGGSSIGIFDPKSSSIEKGESLADTIRIMDLY
                     SDVLVLRHTLDGSSRFAIELAQKPIINAGSGSEEHPTQAMLDLYTIIKEKKKIDGLTI
                     GIVGDLKYGRTVYSLLYGLAKFDVTVHLISPPSLRIRTESIDDISNTLRLYQHTSLED
                     NILSKLDMIYVTRIQKERFPDIQEYEKVRGTYTIDMSVLERAKPGVSIMHPMPRIDEI
                     SYPVDSTNNAIYFKQAAYGRDLRAALLALILNENPF"
     gene            3672..3929
                     /locus_tag="VD694_02235"
     CDS             3672..3929
                     /locus_tag="VD694_02235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11551.1"
                     /translation="MSTDKTKTVNNYHLLQASNKAAGGETARHQDTRAVSGGTPAAKH
                     NTHRKYKRFLGKYSITYTYQRHRQISIEYFRRLQNIIPLIC"
     gene            complement(4167..4688)
                     /locus_tag="VD694_02240"
     CDS             complement(4167..4688)
                     /locus_tag="VD694_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11552.1"
                     /translation="MKSSYKKRGFAVFFVSTFAIASIMLTFIGGSEKADAQSTMDMMD
                     MMMGGGNMTDGSKMMGDTGDNMSLPFNMGVLAMPMMCTTPNQLLGSLTGMMGGGMTGD
                     DGNATQQMMMGLMQQQMMSGAGGMENMTEAELQHVMNMVICLPAMNEEMMQSIMGNGQ
                     NSTSSMMSGMMMQ"
     gene            5005..>5230
                     /locus_tag="VD694_02245"
     CDS             5005..>5230
                     /locus_tag="VD694_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11553.1"
                     /translation="MNKPDSAAGLETGGYLAAFLYRAPKENHDAITQNLKKFIPWFEN
                     NGVRIEYYQLAGRQTQEEVDSAKVAGMEGIE"
BASE COUNT         1538 a         1081 c          930 g         1681 t
ORIGIN      
        1 aatatcgtat cctagaatat catggactga ttccttagcc ccggtgagat taatcacaat
       61 attactagtt ccaagctgca taaatggtgt gctactggct aatgttgaca acataccctt
      121 tcttacaaga tccataagcg ctttctttct agtagacata gcagatagtg caggttttat
      181 catcagcgca agtctagctc ggaaataagt ttcgtcctta ttagattggt acgctagtct
      241 aggaaggtta attgataatg actgtagagt tgctattgca ccagagaaag gcgtgctatt
      301 aatcgattta tgaacaccat tcaggcttct agatccacct cttattagcg atactaatcc
      361 tcctgtgcgt attattgatg caatcctgtc agaatataac gttagacttt ctttacctcc
      421 aaatcgaaga gagagtccga ttcgaggaac tgaagtaaaa tttatgtagt tattgtaact
      481 atcaagaatt gcatttatca acttcgaatt aggctgatcg tcaatatcta gatttagtgt
      541 agtaattgga agtccaagta aagagttgaa cgaatatgtt ggcgctattg atgattccat
      601 taaagctcta gtaagcaaag tagctattcc cgccgaatcg gccatttggc tcaatagagg
      661 aacaattcca tctaatacca cttctgttga agattctcta cttaatagtg atatcagtaa
      721 gggaagagca gttgtcaagt cattaatatt atttatagga ggtatcctcg aaacattcaa
      781 aaacttgccc ttaagatcta tgccagtttt agcaatttca tgaatattca aaaataaggt
      841 gtcgggaact agcccccata ttccactatt agatatgttt atttcacctg ccaaatgtaa
      901 gtcggcaatg tctttggata gggtaccgat tataagatgc tctgagagta tagattgagc
      961 ggctttcgtc attatactgt caatcccatt tctagctttg ccaatatcat tcaacatttc
     1021 aaaaatgtct gccgaaggca atcctagtct tgcgagctta tttctgtatt cttcatgacc
     1081 atgttcagtc agaacagaat tcacagtctc cctaatcaat gatgaggtaa ggtaggcact
     1141 ttggaatttg tacaccttgt tttctgcttc ttcagtaatc ttatgcgcct gctcgagggg
     1201 catatttgct tctcttacta aggattggac tatcttatga gaattaaatt cctcgatgga
     1261 atggccgctt gttctcacat acattttacc gctttcaatt attgatcttt cttctatttg
     1321 ccgggccaag ctcaaaacca acttacctag atttgttatt gtgtatcggc gttcggcttt
     1381 gttaagagca acaagcgact gtcttaacag tttcctcaga tggtaagcaa acttgccgga
     1441 ttctttcttt gatttgaacc ctgcaagtga ttttaattca gaataagtaa ggggtccttt
     1501 ggaatttaga atacgaagaa tatctattct gttaggacta gccataacag aaaaaatcat
     1561 tcttacccgt tttgacgcag attctaagat tccgtctcgt ctaggttctg gttgaaagga
     1621 ataatcatga ctcaactgtt ccattgcctc gatattctac ctaaatgatt aaaactactt
     1681 tgtaaattat attttactat taatataata gaccctactc aggtatagac aaagggttta
     1741 taactactag ccttccaata acagtttttc ttctcctcga acaggttttt ctgtttttcc
     1801 gcttacttta acagtttcaa tggcggctgg aatttctggt aaccttacct tcgcctcgtc
     1861 ttctagtttt ccctcgactt cattaagtat tgaaacagcc tctgaatcta taggagctga
     1921 aaccttgttc atatctatct tgacgttaga gttaattata acgtctgaag taatcgaact
     1981 cacttcagat atcacaccat ttgcacttgg aacgacattt gaaatctctt tctgtatatc
     2041 cttcaccagc tcaatcgtag ggttaatcgt ttccatcacc attgcaaatt cattaattgt
     2101 actaaagcga atcacgacca cttctagggc aagtcctacg ttctgtgtgg ttcgttgaac
     2161 ccttcgaatg ttcgaaagtt catttgccag tgcttttgca cgagagttgt ttccagcttt
     2221 tatattaagc gctatttgat atcgaaaatc cttatccatc gcggcaaatt tcttgtcaag
     2281 catttttaac ctcgatagtt gattattaac tatgctggtg gctcccgcta gctcattttg
     2341 aaattgctgc cgctgtcgat ccatcttcaa taaagtatta tctagaaatg ttaaaatcca
     2401 atgtcaaact ctatgtacca aaagctagta tacagttaag ctcaaatttc attattatag
     2461 ggattcctat tatactttcc ctattaccaa gagaatgaaa atctagaatg ggttctcgtt
     2521 cagaatcaaa gcaagaaggg cagcccttaa atctcgtccg taagcagctt gtttaaaata
     2581 tatcgcatta tttgttgaat cgacgggata cgatatttcg tcaatcctag gcatgggatg
     2641 cattatggat acgccaggtt tggctctttc tagaacagac atatcgatag tgtatgtacc
     2701 tctaactttt tcatattcct gaatatcagg aaaacgctcc ttttgaatac gggtaacata
     2761 tatcatgtcg agttttgaca aaatattgtc ctcaagcgaa gtatgctgat aaagtcttaa
     2821 agtgttggat atatcgtcta tggattcagt tctaatacgt agtgaaggag gagatatcaa
     2881 atggacagtt acatcgaact tcgctaaccc gtacaataat gagtaaactg ttctaccata
     2941 ttttaagtct ccaacgatac ctatcgtaag tccatcgatt ttcttttttt ctttaataat
     3001 tgtgtagagg tcaagcatcg cttgtgtagg gtgctcttca cttccgctgc ccgcatttat
     3061 tatgggcttt tgtgctaatt caatagcaaa gcgacttgat ccatccaatg tgtgtcgaag
     3121 aacaaggaca tcggaatata ggtccattat cctaatagtg tctgcgaggc tttcaccttt
     3181 ttcaattgaa gatgacttgg gatcgaaaat tccaattgaa cttcccccca gtgaggccat
     3241 ggcggcctcg aaactcattc tggttcgagt acttggctcg tagaagatat atccgagaat
     3301 ccttccgttt ccaagaatgc ttttttcgct tggttttaga gaactgattt tatccgtcgc
     3361 attgaatacg tattcaagtt cttgtctaga aaaatctcga attgaaacaa tatctcgatc
     3421 aaagaggtaa ttgttcgaca ttgtctgctt gtccctctta aattactaga acaggtattt
     3481 cagtatgctt atggacgctg tacaaaattg agcacgaatg gttataaaaa cagtcttaga
     3541 tagaataatt atattctcga ttatatttga tttcgatctt tcattacctt taccctgccc
     3601 tttctctggt gtattatatt attcgcctcg tctctcagca gctctcagga ataattctaa
     3661 atattcttct tttgtcaaca gataaaacaa aaacggttaa taattaccat ttgttacagg
     3721 cttcaaataa agccgcagga ggagaaacag cacggcatca agataccaga gctgtttcag
     3781 ggggaactcc tgcggctaaa cacaatacgc atagaaaata caaaagattt ctgggaaaat
     3841 attccataac ttatacctat caaagacaca ggcaaatttc gatcgaatat tttcgtagac
     3901 tccaaaatat tattccactt atttgctaat tcctaagtgc ggttagtaaa tcctttaaaa
     3961 taagtcttct tttaaagtaa taatagacaa acatgccgca ggtggaccct agagcctacg
     4021 aactccaata ccaaacactc gtatttttac atccatcgag tgtcatgcgg tttctaaagt
     4081 ctagttttcg taactgcctg agaataaaat taaataaaaa ttaaaataaa aaacttggtt
     4141 tgaagagaat aagataagct atttacctac tgcatcatca taccactcat catgctgctc
     4201 gtactgttct gaccattacc cattatactt tgcatcattt cttcattcat tgctggaagg
     4261 caaattacca tattcattac atgctgcaac tcggcttcag tcatattttc cataccacct
     4321 gctccagaca tcatttgttg ctgcatcaac cccatcatca tttgttgtgt tgcattgcca
     4381 tcatcaccag tcatcccgcc tcccatcata ccggtcaatg atccaagcaa ttggttggga
     4441 gtagtacaca tcatcggcat ggctaaaacg cccatgttaa atggtaatga catattgtct
     4501 ccagtgtcac ccatcatctt actaccatca gtcatattgc cgccccccat catcatatcc
     4561 atcatgtcca tagtagattg agcgtctgcc ttctctgatc cacctataaa tgtcaacata
     4621 atgctggcaa ttgcaaatgt tgaaacaaag aacactgcaa atcctctctt tttgtatgaa
     4681 cttttcattg agttgaaaac attgatctaa gttacttaaa catatcgtat ggtactccga
     4741 tagacctttt atctctagtt agcatgggat ctcatgcggt tataattcta aataggttat
     4801 tttccaaata ctgacggggc cgaaatcatt cacttcaaca aaaccgctgg caagacaagc
     4861 cccaggctta accaatcatt tagcatacga catatcttat tcctcgcttt ctttaatccc
     4921 catagtttcg ataagtcgca gctgtagaac tgaacttggc agaatttaca agttttatag
     4981 gcagtcattc agtaaaggat gattatgaat aaaccagatt ccgccgcggg cttggagact
     5041 ggaggttacc tggcagcctt cctttaccgg gcaccaaaag agaaccatga cgcgatcaca
     5101 cagaacctga agaagttcat tccatggttt gagaataatg gagtaagaat tgaatactat
     5161 caacttgctg gtagacagac ccaagaggaa gtagactccg caaaagtggc tggtatggag
     5221 ggtatagaaa
//
LOCUS       DASPFX010000101         2047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_493567, whole genome shotgun sequence.
ACCESSION   DASPFX010000101 DASPFX010000000
VERSION     DASPFX010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493567"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VD694_02250"
     CDS             <1..458
                     /locus_tag="VD694_02250"
                     /inference="COORDINATES: protein motif:HMM:NF025580.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4328 domain-containing protein"
                     /protein_id="HXW11554.1"
                     /translation="LFWYYRATKNIHSFGAKTVTSPIMSVIWWFIPIFFFWKPYNVTQ
                     QIWKASNPEVMLAEGIEWKRSQSSKMIKQWWALYLVSIAGAVIVALIGYTSFGTEFNM
                     QAGELGQPLGSTLDLLGIPFQAIGIISIILFIRIIKQISAWQYRKSINV"
     gene            1024..1959
                     /locus_tag="VD694_02255"
     CDS             1024..1959
                     /locus_tag="VD694_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11555.1"
                     /translation="MMVKIHYLYFTIAIFVVSISIAGIQTFAVEEIWEDYKTMGEMVK
                     DIRNGDKDDDKVDYNKFKNSTVYKNAKEDVRNCIDLANKVGEKLGDYEIVRCFENTNY
                     FREKYVDDEIKNTQAANQHESDIQDMNKSKSPSDADLQEQEQEQEHKEVEQSTSDTFT
                     TKDVMRNNLINELIKTGKFTEDEANEFVSKNMMNKTNVTSASNGTNTNDTKPISIYET
                     QEEQQQPRAELVDQNQTQPQIIVNTNQTSTSDFEASSNSVSTEGCDPSYPEVCITTYS
                     AKLICADIPFRNFKVLLPDPHGFDSDADGIGCEEQ"
BASE COUNT          722 a          340 c          398 g          587 t
ORIGIN      
        1 gtcttttttg gtattacaga gcaactaaga acattcattc cttcggagcg aaaacagtaa
       61 cttctcccat catgtcggta atttggtggt ttataccaat attctttttt tggaaaccgt
      121 ataacgtcac tcaacagata tggaaagcga gtaatccaga ggttatgttg gcagaaggta
      181 tcgaatggaa aagaagtcag agttcaaaaa tgatcaaaca atggtgggct ttatatttag
      241 tatcaattgc cggtgccgtt attgttgcgc tcattggata tacaagtttt ggcactgaat
      301 tcaatatgca agcaggagaa ttgggtcagc cccttggatc aacactagat ttactaggca
      361 tcccgtttca agcaattggt atcatttcaa taatcctgtt catacgaata ataaaacaaa
      421 tatcggcttg gcaatatcgc aaatcaatta atgtgtgatt tatgatcagg gattaccaaa
      481 taaaatattt atgatggtat ttatacaata attttatcgg acagaaaggg atcggtctga
      541 aattttgagc gaatgtgttc taactcataa tcctgcatga tagtgtattg gatatattcc
      601 ggccacaatt agataaaaac aaacatcggc aattccaagt ccaactaagg cataattata
      661 tccatctgga acctaccgat ttgacgtttt aatgaaattg tcataggcca gttcttgcaa
      721 atatttaata ttacgtgacg gtatgagtgt ttattccccc aaacgcaaat ccttaattgt
      781 ctaagcatgt gctggataca tcgttaatca gcaaatactt actgagcaat aggcattgtt
      841 tttaaacgtg tgaaatactg taaaatatct ggtgaaatgt tagtcaaact attggtactc
      901 ctatgcatga ttatactgtt cccacttgct acatatgatg ctattaaaga aaactatctc
      961 taaatttgga caaagacaaa gccttatcag tcataatgtt gaggataaac aaaggaaatt
     1021 cgaatgatgg taaaaataca ctatctttat tttacgattg ccatttttgt tgtttctatt
     1081 agcattgccg gtattcagac attcgctgtg gaggagattt gggaagatta taaaacaatg
     1141 ggggaaatgg taaaagacat tcgaaatgga gataaggacg acgacaaagt tgactacaac
     1201 aaattcaaga attccactgt atacaagaat gcaaaggaag atgtaagaaa ttgtatagat
     1261 ttagcgaaca aggttggaga gaaattaggg gactatgaaa tagtgcgttg ctttgagaat
     1321 acaaattact ttagggaaaa atatgttgat gatgaaatta aaaacacgca agcggcaaat
     1381 cagcatgagt cagacattca agatatgaat aagagcaaat ctccatctga tgcagatctg
     1441 caagaacagg aacaggaaca agaacacaag gaggtagaac aatcaacttc cgatacattt
     1501 actaccaaag atgtcatgag aaataacttg attaatgaat taataaaaac tggaaagttc
     1561 acagaagacg aagccaatga attcgtgagt aaaaatatga tgaacaagac aaatgttaca
     1621 tcagcatcca atggtaccaa cactaatgat acgaaaccaa ttagcattta tgaaacgcaa
     1681 gaggaacagc aacaaccgcg ggcagaactg gttgaccaaa atcagactca gcctcaaata
     1741 attgtaaata caaatcaaac atcgacatct gattttgagg ctagctctaa ctctgtttct
     1801 acggaaggct gtgatccttc ctacccagag gtctgtatca caacatactc agctaaattg
     1861 atttgcgctg acattccatt caggaatttc aaggtgttat tacctgaccc tcatggcttt
     1921 gattctgatg cggatggtat aggttgcgaa gaacaatgac taatttcaac agatgactaa
     1981 cgtactaatt tccgaaaatg attgtgcatg atgtcatgta gactagaaga ttttattttt
     2041 aatggat
//
LOCUS       DASPFX010000102         4337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_932464, whole genome shotgun sequence.
ACCESSION   DASPFX010000102 DASPFX010000000
VERSION     DASPFX010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4337
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932464"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..792
                     /locus_tag="VD694_02260"
     CDS             <1..792
                     /locus_tag="VD694_02260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11556.1"
                     /translation="PINSNMVDTKLKNQFLDIDEQQNLSVKTVTYTPKFLCGNVMAGE
                     GPVRPGHYDTDISILNKQVYPIKLLMNVVPNDGKSSNSIIKVLESESAIGITCKDILP
                     LVTPSKNLTEGFVLLTLPISGSMINAFPDPNNREASILKSIDESQANLIEVQVFYTAN
                     ALPQVPSEIIFNKIDFRISNDPSGKIPKDLLNKTLEVTLTSNFDQIYDQVLRVKSLLK
                     ERFNLSDSERNAINVQIEKTEIDSLFTNDDHAISSSRLNPNIYFR"
     gene            complement(811..1473)
                     /locus_tag="VD694_02265"
     CDS             complement(811..1473)
                     /locus_tag="VD694_02265"
                     /inference="COORDINATES: protein motif:HMM:TIGR00323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-6"
                     /protein_id="HXW11557.1"
                     /translation="MIHKYDVYRSPNIGLFTRANDKTLLLPFGFADTKTKKLKEYLDV
                     DEIIYVSIAGTRLLGPMTIMNNNGILLPSTVSNEEIQILKQTGLNVERLNSKFTAIGN
                     LISANDKGAIVSDLFGEEVDQDIKDTLGVPIQRTSIGGFVQVGSMVVATNAGAIVHPN
                     ANDAEIHRISEILQIEAEPATVNGGSPFLSSGIIANFSSVIVGNLTTGPELIMISRAL
                     KV"
     gene            complement(1663..>4337)
                     /locus_tag="VD694_02270"
     CDS             complement(1663..>4337)
                     /locus_tag="VD694_02270"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HXW11558.1"
                     /translation="KPIAQIRKRDKGLADFNNSKISNAIYKALMAAGKADYKLAEKLS
                     EKVVQKMDQQFSILDTNTVPSVEDVQDMVESILIEEGLSETAKAYILYRHERRKVRDE
                     KKKILNKNDLDEVDKAFDVNSLRVLASRYLLRDSNNEIVEDPRLLFERVAILVTIPDI
                     LHDSETYSSSEVVQNITEAEEYYKKLDDFDLKLKIGNHYLNKYHFESLIRHYINLAKN
                     GHMKISFKDLLRLIAEGQLSKYSDRIVEYYNLMVSKDFLPNTPTLMNAGAKLGQLSAC
                     FVLDMKDDMSGIMKSSTDAAMIFKSGGGVGINYSNLRPEGDIVASTSGVASGPISFMR
                     IIDTITDVVKQGGKRRGANMGIMESWHPDIEKFVTAKTKPGVFENFNVSVGIWSDFWQ
                     SIINENNHKYTLKNPTTQEPIKQIDSHQLLDLITFSAWKSAEPGVIFFDNINKYNPCI
                     NVKEGPLRATNPCGEQSLYPYESCNLGSINLANFVKRNIDGKYEFDWQRYEQAIRLST
                     RFLDNVIDMNKYPVEEIEHNTKLTRRIGLGIMGIADLLFTLEIPYNSKEGYDFMNRVA
                     EALSYYSMEESVAIAKARGAFPLFDQTDYVEGKMIPVAGYYEIPKRYHSYDWDSLVEK
                     IEKYGIRNSWTTTIAPTGTLSMIADTSNGVEPVFALVFEKRVTVGRFFYTNRIFENVL
                     KENGLYNDEILTKVANNYGSVRGLPEIPEWLQKIFVTAIDVHWTDHLMAQAVWQKWIS
                     NAIAKTINMPSDVTVEDIKAAYLLSHEMGLKGVTVYRDGSRHEQVLHITGNDKEKKFI
                     VKPSSHVVDHIHSNIKQDYVMKQVEKVFRDSEQVEPTDNPVNISQAKVKMNMTANPNE
                     YTEYEKCPSCTARLIITEGCNMCIECGFSSCMSG"
BASE COUNT         1275 a          856 c          729 g         1477 t
ORIGIN      
        1 ccaatcaata gtaatatggt agatactaaa ttaaagaatc agtttctcga tatagacgaa
       61 caacaaaact tatcggttaa gactgttacc tatacaccaa agtttttgtg cggtaatgta
      121 atggctggtg aaggccctgt acgaccagga cactatgata ctgatataag catccttaac
      181 aagcaagtat acccaataaa attattgatg aatgtcgtac caaatgatgg taaatcttcc
      241 aattcgatca tcaaggttct tgaatctgaa agtgccatag gaattacatg taaggacatt
      301 cttccattag ttactcctag caagaacttg acagagggat ttgtattgct gaccttgcct
      361 atcagtggaa gtatgattaa tgcattccct gatcctaaca atcgagaggc atcaattttg
      421 aaatccattg atgaatcgca agcaaatttg attgaagtgc aagttttcta tactgctaat
      481 gcacttcctc aagttccaag cgaaataata ttcaataaaa ttgattttag aatatcaaac
      541 gatcccagtg gaaaaatacc caaggattta ttgaataaga cgttagaagt tacacttacg
      601 tcaaatttcg atcaaattta tgatcaagtg ctacgggtca agtctttact aaaggaaaga
      661 ttcaacctat cggattctga aaggaacgct ataaatgtcc aaattgagaa aacagaaata
      721 gatagtcttt ttaccaatga tgatcatgca atatcatcat cacgtctaaa tcctaacata
      781 tactttagat aaaataaaga ggaacaagac tcaaaccttt aatgccctac ttatcattat
      841 caattcaggt ccagttgtca aattacctac tataactgag ctaaaattag ctattattcc
      901 tgatgataaa aatggcgatc ctccattgac cgtggctggt tctgcctcaa tttgaagtat
      961 ttcagatatc ctgtgtattt ctgcatcgtt agcgtttggg tgaacaatgg ccccagcgtt
     1021 tgtggcaaca accattgagc caacctggac gaaacctcca attgacgttc tttgaattgg
     1081 cacaccaaga gtatccttaa tgtcttgatc gacttcctcg ccaaacaggt ctgaaactat
     1141 tgctccctta tcatttgcgg atattaagtt tccaatcgca gtaaatttgc tatttagtcg
     1201 ttctacattt aaccctgtct gcttaagtat ttgtatctct tcattcgaaa cggttgaggg
     1261 taataatatt ccattattat tcataattgt cattggtcct aacaacctgg tccctgctat
     1321 agaaacataa attatttcgt caacatccaa gtactctttt agttttttag tctttgtatc
     1381 cgcaaaccca aacggaagca aaagcgtctt atcattggca cgtgtaaata aacctatgtt
     1441 tggacttcta tatacgtcat atttgtgtat caccaaatag ttgaactctc catcatgtga
     1501 acatcatata gcaatatttc tcttatggtc gactgagata agaaactatc tattctagct
     1561 caatcgtggg gaaataattt ttgggcatac caataacttt tcattcgtca tgttttgtta
     1621 atatttcatt tttgccaaaa ataaaaatgg atggagtttt gattaccctg acatacagga
     1681 actaaagcca cattcgatgc acatattgca accttcagtg ataattaatc tcgcagtaca
     1741 agatgggcat ttttcatact ccgtatactc attagggttt gcagtcatgt tcatttttac
     1801 cttcgcttga gaaatgttta ctgggttgtc tgtaggttca acttgttcgg aatctctaaa
     1861 gactttttca acttgtttca taacatagtc ttgtttaatg ttactatgaa tgtggtcaac
     1921 tacgtggcta cttggtttca ctatgaattt tttctcctta tcatttccag tgatatgtag
     1981 tacctgttca tgtctggatc catccctata gacagtcact ccctttaatc ccatttcgtg
     2041 tgataaaaga taggcagctt ttatgtcctc gacagtaacg tcagatggca tgtttatagt
     2101 cttggcaatt gcattgctaa tccatttttg ccatactgcc tgagccatta gatgatcagt
     2161 ccaatgtaca tcaattgcag tgacaaatat tttctgcagc cactctggaa tttcaggcaa
     2221 tcctctaaca gaaccataat tgtttgcaac ttttgtgagg atttcatcat tgtaaagtcc
     2281 attttctttc agaacgtttt caaatatgcg attggtataa aagaaccttc ccacagtaac
     2341 tcgtttttca aatacaagtg caaaaactgg ctcaacaccg ttggaagtgt cggctatcat
     2401 tgaaagagtt ccagtagggg caattgtagt agtccatgaa tttctaattc cgtacttttc
     2461 tatcttctca accaatgaat cccaatcata tgagtgatat cgctttggaa tttcataata
     2521 tcctgccact ggtatcattt ttccttctac ataatcagtc tgatcgaata gtggaaacgc
     2581 gcctctcgct ttagctattg ctacactttc ttccatacta tagtacgaaa gtgcttctgc
     2641 tactctgttc ataaagtcat atccttcttt tgaattgtag ggtatttcta aggtgaataa
     2701 tagatcagca attcccatta tccccaggcc aattcttctt gttaattttg tattatgttc
     2761 aatttcttcc accggatact tattcatgtc tatgacattg tctaggaatc tagttgaaag
     2821 acgaatagcc tgctcatatc tttgccaatc aaattcatac ttcccgtcaa tattcctttt
     2881 tacaaaattg gctaaattaa tggaacctaa attgcatgac tcatatggat agagtgattg
     2941 ctcaccacaa ggatttgttg ctctaagtgg tccttctttt acgttgatgc aggggttgta
     3001 tttattgata ttatcgaaga atatgacacc tggttcggca ctcttccagg cactaaaagt
     3061 tatcaaatct aaaagctggt gtgaatcaat ttgcttgatt ggttcttggg tcgttggatt
     3121 tttaagagtg tatttgtgat tattttcgtt aattattgat tgccagaaat cgctccagat
     3181 accaacactt acgttaaagt tttcgaagac gcctggtttc gttttggctg ttacgaattt
     3241 ttctatatca ggatgccatg attccattat tcccatattt gcaccccttc tttttccacc
     3301 ttgttttacc acatccgtaa ttgtatcaat aattctcatg aatgagatcg gtcctgaagc
     3361 tacgccagaa gttgatgcaa cgatatcgcc ttctggtcga agatttgaat agttaatacc
     3421 aactccgcca ccagatttga atatcatcgc agcatcagtc gaagatttca ttattcctga
     3481 catatcgtct ttcatatcca atacgaagca agctgaaagc tggccaagtt ttgcaccggc
     3541 attcattaga gtaggggtat ttggaagaaa gtcctttgat accatcaaat tataatattc
     3601 aacaatccga tcagaatatt tcgacagttg accctcggcg ataaggcgta aaagatcttt
     3661 aaaactaatt ttcatatgtc cattttttgc caaattaatg tagtgtctga ttaatgattc
     3721 aaagtgatat ttgttaagat agtgatttcc aatctttagt ttcaagtcaa aatcatctag
     3781 tttcttgtaa tattcttcag cttcagtgat attctgaacc acctcgctac tggaatatgt
     3841 ttcagaatcg tggagaatat ctggaattgt tacaagaatt gcgactcgtt caaaaagtaa
     3901 tctaggatcc tcaacaattt cattattact gtctcttaac aaatagcgcg aagcaagcac
     3961 tctgagtgaa tttacatcaa aggccttatc cacttcgtcc aaatcgttct tgttcaggat
     4021 cttcttcttt tcatctctaa ccttgcgcct ttcatgtctg taaaggatgt aggcctttgc
     4081 agtttctgaa agaccctctt caatcaagat agattctacc atatcctgga catcttcaac
     4141 actaggaact gtgttggtat ctaaaataga aaattgttga tccatttttt gaacaacttt
     4201 ttcagataat ttttcggcaa gcttgtaatc agctttgcca gctgccatta aagctttgta
     4261 gatggcattt gaaatctttg aattattaaa atcggctagt cctttatccc tcttcctaat
     4321 ttgcgcgatt ggttttt
//
LOCUS       DASPFX010000103         2832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1566009, whole genome shotgun sequence.
ACCESSION   DASPFX010000103 DASPFX010000000
VERSION     DASPFX010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566009"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..651)
                     /locus_tag="VD694_02275"
     CDS             complement(<1..651)
                     /locus_tag="VD694_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HXW11559.1"
                     /translation="MKREIIGKGTWIDKLAYTVIKREKEIGRSLDLVLVESGLGASGF
                     PHIGSLGDAVRAYGVSLAIKNLGYDSKLIAYSDDLDGLRKIPSGLPVWLAEHIGKPVS
                     SIPDPIGQCHESYGAHMSSLLLEALDKLDIDYEFLNAAKVYGSGILSDQIDKILTNAP
                     NLGNKIEEIVGQSKYKESLPYFPICESCGRLYVANAEKYIKEERKVSYVCNGTKLGN"
     gene            complement(657..2279)
                     /locus_tag="VD694_02280"
     CDS             complement(657..2279)
                     /locus_tag="VD694_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine(34) 5-carboxymethylaminomethyl
                     modification radical SAM/GNAT enzyme Elp3"
                     /protein_id="HXW11560.1"
                     /translation="MRSTFDSAWQNESYEYDSACIEIAYKLSLLEDPSLKHISSFIRG
                     ASSKYHLSKTPKFQDIIKFLPSDSNIRKTMMVKPVKTASGILVITVMAKPYDCPHGKC
                     IYCPGGKEFNIPLSYTGKEPVTKLAQKFEFDPKSQIASKLEQEVLRGHNVSKVELVIV
                     GGTFPFMPQDYQRNFAKECFEALNGQESVSLQEAQKLNEKSKIRCVGFTVETKPDYCK
                     NAHIDLMLDLGITRVEIGVQSLQKDVYRNINRGHTIEDVYDSFQIAKDSGYKIVAHMM
                     PGLPGSTPEKDYEDFRKLFEDQQLRPDMLKIYPTLLLRDTGLAKLYEKGLYTPYPDDV
                     FTDLLLKMKKIVPSWVRIMRIQREIESEDIINKNSSSNIRQILQQKLRAQGLQCNCIR
                     CREVGIRKLDNQDVKINLKRIDYDSSEGKEVFLSLEDSLKKILFGYLRLRRLARPHRK
                     ELKDKNGKPSAIIRELHVLGQLVDIGRTNDFSITSSQHKGYGSRLLEKAEDIVKNEFS
                     INSISIISAIGTRQYYKKFGYALNGPYVTKEL"
BASE COUNT          837 a          558 c          453 g          984 t
ORIGIN      
        1 gttacctaat ttagttccat tgcagacata actaactttc cgctcttctt ttatatattt
       61 ttcagcgttt gctacataca ggcgtccaca cgattcacaa attggaaaat atggaagaga
      121 ttctttatat tttgattggc ccacaatttc ttcaatcttg ttacctagat ttggagcatt
      181 agtcaaaatc ttgtctattt gatctgacaa tattccgctt ccgtagactt ttgcagcatt
      241 aagaaattca taatctatat caagtttatc caacgcttca agtaacaaac tactcatgtg
      301 agctccgtaa gattcatgac attggcctat aggatcaggt atactagaaa caggtttgcc
      361 tatgtgttca gccaaccaca ctggcaaccc agatggtatt tttcttagtc catccaaatc
      421 atcagaatat gctattaatt ttgagtcata tcctaaattt tttatggcaa gtgaaactcc
      481 atatgcccta acagcatcac ccaggctacc tatgtgtgga aaaccagatg cgcccagacc
      541 actctcaact aatactaagt caagagatct accaatttct ttttcccttt taataacagt
      601 ataagccagt ttgtcaatcc aagtgccttt tcctattatt tctctcttca tcttgcctac
      661 aactcctttg ttacgtatgg tccgttcaat gcatatccaa atttcttgta gtactgcctc
      721 gtacctattg cacttattat agaaattgaa ttaatggaga attcattttt cacaatatct
      781 tcagcttttt ccagcaatct agatccatac cccttgtgtt gagaagacgt gattgaaaaa
      841 tcattggtcc tccctatgtc taccaattgt cctaatacat gtaattcacg aataattgcc
      901 gatggttttc catttttatc tttcaattct tttctatgtg gtctagctaa tcttcttaac
      961 cttaaatatc cgaaaagaat tttcttgaga gaatcttcca aactcaagaa gacttcctta
     1021 ccttctgaag agtcataatc gattcgtttg agatttattt tcacatcctg attatccagt
     1081 tttcttattc caacctctcg gcaccttatg caattacatt gtaacccctg cgctcttaat
     1141 ttttgctgca atatctgtcg aatgttactg ctactgtttt tattaattat atcttcagat
     1201 tctatctcac gttgaattct cataattctt acccatgaag gaacaatttt tttcatttta
     1261 agaagtagat ctgtgaatac atcgtctgga tatggtgtat agagaccttt ttcatataac
     1321 ttagctaatc cagtatctcg caaaagtaac gttggatata tcttgagcat atctggtctt
     1381 aattgttgat cttcaaacag tttccggaaa tcttcgtaat ctttttcagg agtagaaccg
     1441 ggcaatcccg gcatcatatg agcaacgatt ttgtatccag agtccttcgc aatttggaat
     1501 gaatcataga catcttcaat tgtatgacct cgattaatat ttctatatac atctttttgt
     1561 aaggattgaa ctcctatttc aacacgagtg ataccaagat caagcattaa atcgatatgg
     1621 gcattcttgc aataatcagg cttcgtttct acggtaaatc ctacgcatcg aattttactt
     1681 ttttcattta atttttgtgc ttcctgtaac gacacagatt cttgaccgtt cagtgcctca
     1741 aaacattctt ttgcaaagtt tcgttgataa tcttgcggca tgaacgggaa ggttccacca
     1801 acaataacta gttctacctt tgacacatta tgacccctta aaacttcctg ttccaatttg
     1861 gaagcaattt gagatttcgg atcgaattca aatttttgag ctaatttagt aacaggttct
     1921 tttccagtat aacttaacgg aatattgaat tcctttcctc caggacagta aatacatttt
     1981 ccatgtggac agtcataagg ttttgccata accgtaataa ctagaatacc agaagcagtt
     2041 ttaacaggtt ttaccatcat tgtttttctt atattactat cacttggtaa aaattttatt
     2101 atatcttgaa attttggagt tttagataga tggtattttg acgaggctcc tctaataaat
     2161 gatgatatgt gctttaatga gggatcctca aggagactta atttatatgc tatttcgatg
     2221 caggctgaat catattcgta agactcattt tgccatgcag aatcaaatgt actcctcatc
     2281 tagctcatca tcgcttacta atctatttct tatatactat agtatctaat gcgtctactt
     2341 taaagagtat tcttggaaat ccagcaaccg tgtagtaaat caggcaattg catcaaccag
     2401 tcatgaatat cccagattta cggtgaagta agttatcata tattgaggaa tagaataatg
     2461 aaacgtaacc agaacaatat gatgaattat agattcacta tgaaacaacc acacgtggaa
     2521 ttaataatcc tgtgatcgat aaattctcta aagtgtgaat ctctagaatt atttcatctt
     2581 ttagaatcca agaacaataa aacaaaagtg ggaatttaag gtattcctaa ggctttcttc
     2641 acgatatcaa gagtttgatt gctttcagga gccaatggac tagtaacatt agcagtagcg
     2701 tttattggtg gcacttcagc aggtgcagga gcagtaacat tagcagtagc gtttattggt
     2761 ggcacttcag caggtgcagg agcagtaaca ttagcagtag cgtttattgg tggcacttca
     2821 gcaggtgcag ta
//
LOCUS       DASPFX010000104         2327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1037037, whole genome shotgun sequence.
ACCESSION   DASPFX010000104 DASPFX010000000
VERSION     DASPFX010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037037"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1062)
                     /locus_tag="VD694_02285"
     CDS             complement(<1..1062)
                     /locus_tag="VD694_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonyl-tRNA synthetase editing
                     domain-containing protein"
                     /protein_id="HXW11561.1"
                     /translation="MLHADFIEYQPISKEIQTAEDIPSKSSKKIDEVIVALVAVEKDD
                     DESLTEEVGNELKAYGKMIKCDNLLIYPYAHLSSNLADPNTAQSVLNSIEEKSKNLFK
                     TVNRAPFGWTKSFNIKIKGHPLAEQAKTIQKKSDAASNKSKSESNGESTALKSEEVLN
                     STWYVQTVEGSLVPLDDYTFEKNSPFSKLADYELSKKRTVVEVPPHVRLMKKLAIADY
                     EPSSDGGNMRYYPKGRLMKSLIENYVTKMVHEYGGIEVETPVMYDSNHPSIHSYFNRF
                     PARQYSIQSDNKQLFLRFAACFGQFLMAKDFQISYKHLPLKLYELTRYSFRREKSGEL
                     VGLRRLRAFSMPDCHAFCKD"
     gene            complement(1142..>2327)
                     /locus_tag="VD694_02290"
     CDS             complement(1142..>2327)
                     /locus_tag="VD694_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11562.1"
                     /translation="ETIQLPFMLTSILLILNLGKGRLLQSPSLAQSQSISQNDMEQQS
                     SQLQKNQQELQLEQKQQGYQSEYTKLTLIISGIFLGLAIFTKIPAFTIIPLGIIMVYM
                     VTRKKRHVIVWLIPVLLVPMLWPIHATLSGDMNDWIDGVRYQISRDRPLINTINTFFQ
                     IDPVLFVLGIGGLIYSAVKKDYFLLLWTIPIFVFLQAIGYVSSFHLILLMPPLCIAGA
                     TMIDKIGNNIANAKMRNMLPYIRIAVIGIFGICSITMLITLNMNSTYYQALAFVLSNL
                     PDSNSNATSLNPANKVTLIGNPQYFWIPEFVFNKTFDAKNFYSKTPFKTDKYMMIIDS
                     GFVRILNADNSSRLNLAYNATHNLARFEQNITGGTDVNKYPFTNLRLSPETRFIELRS
                     NY"
BASE COUNT          686 a          422 c          429 g          790 t
ORIGIN      
        1 gtctttgcaa aaagcatgac agtcgggcat actaaaggct cttaatcttc taaggccaac
       61 taattcgcca ctcttttccc ttctaaaaga ataccttgtt aattcataaa gtttcaaggg
      121 caaatgcttg taagaaattt gaaaatcttt ggccatcaaa aactgaccaa aacatgcagc
      181 aaacctcaaa aagagttgtt tgttatctga ttgaatactg tattgtcttg ctggaaatct
      241 attaaaataa ctatgaattg aaggatggtt ggaatcatac attactggtg tttcaacttc
      301 tatgccccca tattcatgta ccatttttgt aacatagttc tctatcagtg atttcatcaa
      361 acgtcccttt ggatagtatc tcatattacc gccatcagat gaaggctcat aatcagctat
      421 tgccagtttc ttcatcaatc tcacatgtgg aggaacttca actactgttc tcttttttga
      481 taattcataa tcagctagct tactaaatgg actgtttttt tcaaaagtat aatcatctaa
      541 cggaacaaga cttccttcca ctgtttgaac ataccacgtg gaatttagta cctcttcgga
      601 ttttagcgca gttgattcac cattggattc tgatttggat ttattactag cagcatcaga
      661 ttttttctgg attgttttgg cttgctctgc cagcggatgc ccctttattt ttatgttgaa
      721 agattttgtc caaccaaacg gcgctctgtt tacagtcttg aatagatttt ttgacttttc
      781 ttcaatggag ttcagcacag attgcgctgt gttggggtcc gccaaatttg agcttagatg
      841 tgcatacgga tagattaaca ggttatcaca ttttatcatc ttgccatatg cctttaattc
      901 atttccaact tcctcagtta gagattcatc atcatctttt tcgacggcaa caagtgccac
      961 aatgacttcg tctattttct tactagactt tgaaggtata tcctctgctg tctgaatttc
     1021 tttggaaata ggttggtatt caataaaatc tgcatgtagc aaaagaatgc gcatttaatg
     1081 acgagaacta aacctaatag gtcaaattaa atggtttgga aataaattct cgaacctgca
     1141 actagtaatt ggatctgagt tcaataaacc gtgtctcagg gcttagtctc aagtttgtaa
     1201 atggatattt gttaacatct gtcccaccgg taatattctg ctcaaatctt gctaaattat
     1261 gcgttgcatt atatgccaga ttcagtctgg atgaattatc tgcatttagt attctaacaa
     1321 atccactatc tataatcatc atgtatttgt ctgtcttaaa tggtgtcttg ctgtaaaagt
     1381 tctttgcatc aaatgtcttg ttaaaaacaa attctggaat ccaaaagtat tgaggatttc
     1441 caattaaagt tactttgttg gcaggattga gacttgttgc atttgagttg ctatccggta
     1501 aattcgaaag tacaaaggca agtgcttgat aataagttga attcatattc aaggtaatta
     1561 gcatggtaat gctacatatc ccaaatattc caatgactgc gatcctgatg tagggaagca
     1621 tgtttctcat cttggcattg gcaatgttgt ttccaatctt gtcaatcatg gtagctccgg
     1681 ctatgcataa tggaggcatt agcagaataa gatgaaatga agagacatat cctattgctt
     1741 ggaggaagac aaaaatggga attgtccata acaaaaggaa atagtctttc tttactgcag
     1801 aataaataag cccacctatt ccaagaacaa acaagactgg gtctatctga aagaacgtgt
     1861 ttattgtatt aatcaaaggt ctatctctgc taatttggta acgaacgcca tctatccaat
     1921 cgttcatgtc tccgcttaat gttgcatgga taggccacaa cattgggacc aaaagaacgg
     1981 ggattagcca gacaattaca tgtctcttct ttctggtaac catgtatacc ataattatac
     2041 ctaaaggaat tattgtaaat gcaggtatct tggtaaatat cgctagaccc aggaaaattc
     2101 cagaaataat caaagtaagc ttggtatatt cgctctgata tccttgctgt ttttgttcaa
     2161 gctgcagctc ttgctggttc ttttgtagtt ggcttgattg ttgttccatg tcattttgtg
     2221 atattgattg tgattgagca agtgaaggcg attgtaacag gcgacccttg cctaaattta
     2281 gaatgagaag aattgatgtt agcatgaaag gaagttgtat tgtttct
//
LOCUS       DASPFX010000105         4622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2027849, whole genome shotgun sequence.
ACCESSION   DASPFX010000105 DASPFX010000000
VERSION     DASPFX010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4622
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2027849"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..515
                     /locus_tag="VD694_02295"
     CDS             231..515
                     /locus_tag="VD694_02295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11563.1"
                     /translation="MSVAPYPPFGIATITAMGLAAYLVVIGLYTSTVSMSQDTELRRY
                     IRRLARSQTRLFDSIVSAESGREIEKRVLELIKKQVNRNGDNNRCRNITE"
     gene            613..1332
                     /locus_tag="VD694_02300"
     CDS             613..1332
                     /locus_tag="VD694_02300"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HXW11564.1"
                     /translation="MLFNSTCWQINLNYLAIPFGNMAASETTEKSIPNWKITGDWFDV
                     CKCNVPCPCTFAQTPTYVDCDAVLAYHIKNGIYGQTQLDGLNVLVLSYYYGNIWDGKT
                     KATVSIFFDEKANEEQREALNMIFSGKAGGFMAEFATLIKEVRQSEYAPISFEVADDL
                     SHWSAEVPGKVTAKAEALTGPMTPPGKRVQTINAPGSETGPGTVSTWGRAITNEVDAL
                     GFKWEWNGRSSKHIPFDWNGP"
     gene            1513..2346
                     /locus_tag="VD694_02305"
     CDS             1513..2346
                     /locus_tag="VD694_02305"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HXW11565.1"
                     /translation="MNDQKVAVITGSSSGIGLETAFTLARNDYITYATMRSPEKDTSI
                     KATVQNEELPIRIVQLDVTDDSSVKNAVDHIISEAGRIDVLVNNAGYGLVGAFEDLAM
                     EETKSQYETNLFGLIRVTQAVLPTMRKQRSGRIINVSSGAGIFGYPGGSAYVSTKFAV
                     EGLSESIAYELEPFGIKVILIEPGFIRTNFGNAMVIAKKAQNQASPYSGLMQKMMASA
                     TELAKNASDAELVANIILDAATNPNPRIRYLAGKDVESWAASKKTMDEFEFFNMMKSL
                     F"
     gene            2471..2866
                     /locus_tag="VD694_02310"
     CDS             2471..2866
                     /locus_tag="VD694_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11566.1"
                     /translation="MGSTVCVRCGANLIPHSYCDICHDVLCFICSSCSMNTIERIHTN
                     CHNASTLGDNNNIYLQDPRELLEEPIVINNNYINAHYYIQNQLNEKIKDNSIKLSKSY
                     WDSTFEAIKLVNTHWNRIFNIGKPNSSMV"
     gene            3264..3527
                     /locus_tag="VD694_02315"
     CDS             3264..3527
                     /locus_tag="VD694_02315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11567.1"
                     /translation="MNSNKQDFDWSETITKPVYSVDDKCVGHVDGLENEQFIVKDRII
                     NTIYYRLDRDLLKEYQGGKVKLKITEQELNSKYKRDHPGYFGE"
     gene            complement(4033..4167)
                     /locus_tag="VD694_02320"
     CDS             complement(4033..4167)
                     /locus_tag="VD694_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11568.1"
                     /translation="MTKRNDETTSIIQSDDNSIHHEHIGDANKSDVSPNTPPADEVDL
                     "
BASE COUNT         1524 a          779 c          904 g         1415 t
ORIGIN      
        1 caaaagaaaa tacaagtaac cattcatttt tcataggaac aatattcttc atagcatgca
       61 tagtatggcg gcacactaat taagaatgct aaagactgaa tgttaattat tctgttgaga
      121 tatgatgcta attagcaaaa gcagcagata agaattctcc catcagaaga tatttgattt
      181 ttactggatt tggattcttt ctacttttta gcgccaatca agcaattttg atgtcagttg
      241 ctccatatcc gccatttggt attgccacta ttacagcaat ggggttagct gcgtatctag
      301 tcgtgattgg tctctataca tcaaccgttt ccatgtctca agatacagag ctgcgtaggt
      361 atatacgacg tctagccaga tcgcaaacaa gactatttga ttccatagta tcagcagaat
      421 caggaagaga gatagagaag cgagtcttag agttaatcaa aaagcaagtc aatagaaatg
      481 gagacaataa ccggtgtagg aacatcactg agtgaaaaag aagctagaga atatatcgaa
      541 gaagtcataa aagagatcaa gaagtagatg taatatagat ggatcgatag tcagaaattc
      601 tattcatata tcatgttatt caattcgact tgttggcaga taaacctaaa ttacttagca
      661 ataccatttg gtaatatggc tgcttcggag actactgaaa agagcatacc aaattggaag
      721 atcacgggag attggtttga tgtatgtaaa tgtaatgtac cgtgtccatg tacttttgct
      781 cagactccaa cttatgttga ctgtgatgca gtacttgcat accatattaa aaatggaatt
      841 tatggtcaaa cacagcttga cggcttaaat gttttagttc tgtcatacta ctacggtaat
      901 atctgggatg ggaagaccaa agccaccgta tctatattct ttgatgaaaa agctaacgaa
      961 gagcagcgag aagctctgaa catgatcttt agtggaaaag caggtggttt tatggcggaa
     1021 tttgcaacgc tcattaaaga ggtcagacaa agtgaatatg caccaattag ttttgaagta
     1081 gcagatgatc tttctcattg gagtgctgag gtacccggaa aagttactgc taaagcagaa
     1141 gccctaacag gacctatgac acccccgggt aaacgagtgc agactattaa tgcaccagga
     1201 agtgaaacag gtcctggcac ggtttctaca tggggaagag ctattacgaa tgaagttgat
     1261 gcattaggct ttaaatggga atggaacggc agatcgagca aacacattcc atttgattgg
     1321 aatgggccat gaagtataat acaacttcat cgcagagaaa atatggatag gcgtagtagt
     1381 actaatctct aaagatatga gataagatag ttctgcattt actgagacag ctgatccgga
     1441 ttcacgtttt ctgtccacaa tctggagtat tagtcccact agcgataaat aataccaaat
     1501 taaaagtaga gtatgaatga tcaaaaagtt gccgttatta ccggcagttc cagtggaata
     1561 ggattagaaa ccgcattcac gttagcacgg aatgattaca ttacatatgc tacaatgcgt
     1621 tctccagaaa aagatacatc gataaaagca actgtacaga atgaggaact cccaattagg
     1681 attgtccaac tagacgttac tgatgatagt tcggtgaaga atgcggtaga tcatataatt
     1741 tctgaagccg gccgaattga tgtcctagta aataatgccg gttacgggct cgttggggct
     1801 tttgaagatc ttgcaatgga agaaactaag tctcagtatg aaactaactt atttggacta
     1861 ataagagtca cacaagcagt tctacccaca atgagaaaac agagatcagg tagaattata
     1921 aatgtaagtt cgggtgctgg tatctttggt tatcctggag gttcagctta cgttagtact
     1981 aaatttgccg ttgagggtct gagtgaatct attgcatatg aattggaacc atttggaata
     2041 aaagtgatcc tgatagagcc tgggtttatc aggactaact ttggaaacgc aatggtcata
     2101 gccaaaaaag cccaaaacca ggcatcacca tactctgggc tgatgcaaaa aatgatggcc
     2161 agtgcgactg aactagcaaa gaatgcttct gatgcagaat tagttgctaa tattatcctg
     2221 gacgctgcta caaatccaaa tccccgtatt cgatatcttg caggtaaaga tgtagaatct
     2281 tgggccgcaa gcaagaaaac tatggatgag tttgaattct ttaatatgat gaagagtcta
     2341 ttttaagttg cttccgtatt tagatcctat agttaggggt gcaaaagctg tgagcaaaga
     2401 tatttaatag ctctattaac ttagttcctg aaagtataaa agatctgatt cctgatattt
     2461 gatagcaact atgggttcaa ctgtctgtgt aagatgtggt gcaaacctaa taccacattc
     2521 ttattgtgat atatgccacg atgtattatg ctttatttgt tcgtcgtgtt cgatgaatac
     2581 tattgaaaga attcatacta attgtcataa tgctagtaca ctaggtgata acaataatat
     2641 atatttgcaa gaccctcgag aattacttga agaaccaata gttataaaca ataattatat
     2701 taatgcccac tattacatac aaaatcaact caatgaaaag ataaaagaca attcaatcaa
     2761 attatcgaaa tcatattggg atagtacatt tgaagctata aaattggtta atacacattg
     2821 gaacagaata ttcaacattg gtaaacctaa ctcttctatg gtttgactaa tgtctaaata
     2881 atattatgtt tgatagcaca atatttgtga taatagtgtc ttgcccgtcc tctactcacg
     2941 atgacattgt ctcgtgtagc ccgtctacca caaattagct gctcttgctg cagcttctga
     3001 ctcatttgta caatccatct caaactaata tttattccat tactatgtaa ttcgtattga
     3061 gtctactaat ggactaaaat gaattagttg ccaaatatat cgactttccc tatgtcattc
     3121 tcatttttgg agaatcatgg aaagacattc acgcattatc gttacttaga attagtattc
     3181 aactatactt taagtagtct catatatgaa aagtctttac tattatgtag aaatttatta
     3241 gggctatgca aataactgta ctcatgaatt caaataaaca agattttgat tggagtgaaa
     3301 caataacgaa gcctgtttat tcggttgacg acaagtgtgt gggtcatgtt gatggattag
     3361 agaatgaaca atttattgtt aaagatagga taattaatac catatattat cggttagata
     3421 gggatctatt gaaagagtat caaggcggta aagtaaaatt aaagattact gagcaagagc
     3481 taaattcaaa atacaagagg gaccatccag gatattttgg tgagtgaagt agtaacttgt
     3541 gtgttatttc actcttctag gaatatgaaa tttgtgatat agacaccatc tcgtctgctc
     3601 ttcctgtacc tgtatccatt gtatattcct ggcctatttg tactgcaggc atagtagtaa
     3661 caagaaatac ggatctctaa ttgaaattaa agaaagagga gttggagggt tacgactcat
     3721 taacagataa tacttcactt actctatttt ttatctattc tagtagtggg tttgattgtt
     3781 taacattttc ttcggccgat gttgccaaat atacgtttac aaaataaaat aaaaataatg
     3841 tggtctggac ttttgttagt ggccgcaacc acagccagtg gagtggtgct cttggttcac
     3901 agcacatgat ggacataatg tagccgttgc agtctctgct acgaattttg ttccacatga
     3961 gctacaagtc gctttttgaa gttcttgcat gttgcaagcc attttcatta cagttattaa
     4021 tatcttcgta aattatagat cgacttcatc tgctggcgga gtattgggag atacgtccga
     4081 cttatttgca tctccaatat gttcgtgatg aatgctatta tcgtcactct gaattattga
     4141 agtagtctcg tcatttcttt tcgtcacaca atcattgcat agccatgatc catcaatacg
     4201 cttacagaat tttactcttt catgttattc aatttctatt tgaacggaat cggtaacagg
     4261 cgaattacac cagacacatc gagataggga atctatcatg atatttattc atttatttag
     4321 ttatacaaat attaatcaaa ccaacaaaca gacgtctgac taattacaat attctcaata
     4381 ctcttctttt ctctatctat agtattatga tctttcctga tatctgacta atttaatgtg
     4441 accagatttt ctgagcagct cttaaataaa cgaattgtag aatgtgatac atggctatat
     4501 tggctatttt caaaacaaat gcgataacaa aagaaacgta tgaagaatta agaaaagaaa
     4561 tagactggga acgtcaacat ccagacggag aaactcttca tgtggctgcg tttgatgact
     4621 ca
//
LOCUS       DASPFX010000106         2152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2113876, whole genome shotgun sequence.
ACCESSION   DASPFX010000106 DASPFX010000000
VERSION     DASPFX010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2113876"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(489..893)
                     /locus_tag="VD694_02325"
     CDS             complement(489..893)
                     /locus_tag="VD694_02325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11569.1"
                     /translation="MTDLQNRMKNSIRWPLHAKVINAICWAGPFAPIALIPSLFPYLI
                     LAGIGAGNISTYLLLKRYRKINHNNNDKGSIYDRGQFIVGLISLIAIPIVAEVHINTI
                     IVRGDMAVMLSRILISFAYGAGGTYSMMKKGK"
     gene            complement(1155..1571)
                     /locus_tag="VD694_02330"
     CDS             complement(1155..1571)
                     /locus_tag="VD694_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW11570.1"
                     /translation="MSGSESSYRDRIYIVKDIIMKLVEHNELNQTTLLSFCGLNLKKH
                     RSILDDLESNGFVLKYEQPFGKRTTFVYRPTPKGLEFCTTILEPYEMVFPRRKFKNYN
                     NSNYPDNLQYHVHGQKGDTDEEERQQNIVEITHNRQ"
     gene            complement(1849..>2152)
                     /locus_tag="VD694_02335"
     CDS             complement(1849..>2152)
                     /locus_tag="VD694_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11571.1"
                     /translation="IVSISALLLSPLAMGLSIYLISHPSFVTILEIEHDFGFALSILL
                     TAVFIISFIWLASGIRQYRSINPWSKRYEEYKKEKEDMDRKIAIRYGFGLFPTLNE"
BASE COUNT          674 a          410 c          354 g          714 t
ORIGIN      
        1 gaacaaaggt atgctttatc acagcagcag acaaaaacaa ctctggagag gccagagcaa
       61 tctgaagatt acaaggagaa actgcaacca tactgtgaat tgaaaaagga tatgttctta
      121 caaaaaaccg atttcaaatg atgatcttgt caacgaaata aacaagaaaa taagaattaa
      181 ccttgacgac agatgaatgc tgatgagatc acatctcatc tttggctgcc agtgcattat
      241 tggttgatta attgcttatg tatcagtatt gtatcaaaaa cttcttttca tacacgcttt
      301 ctagtttttt gaaaatcgat acgcagtctt gattgtcaaa agtgtgatgc tttccgatta
      361 catcatcaat aagcttgctc cttatctgtt tgctctacga taaacaaaca caagtcactc
      421 atttataatt aatgcagcta ccttaaagaa tttacaaaaa tcattgttat atttttcact
      481 agacaacatt attttccctt tttcatcata gaataagtcc cgcctgctcc ataagcaaat
      541 gatatcaaaa tacgtgataa cattacagcc atatcacctc taactataat cgtatttata
      601 tgaacttcag ccactatagg gattgctatt aatgagatca aaccaacaat aaattgtccg
      661 cggtcgtaga tgctgccttt atcattgtta ttgtgattta tttttctgta tcttttcagt
      721 aataagtacg ttgaaatatt cccggccccg ataccagcta aaatcaaata gggaaaaaga
      781 gaggggatta atgctattgg tgcaaacggt ccagcccaac atatagcatt tataaccttt
      841 gcatgaagcg gccacctaat actgtttttc attctattct ggagatcagt caatagtgtg
      901 ctgcgcttgt tatacaataa agatataatg acataacaaa gcttcctatc caaataacag
      961 cattatagta gaatggccat ctgtttagag aggctatttc acttagaaca gaggccaagg
     1021 caacagctat ggatatagca ataaaaaata ctccaaataa ctgattctct tgacctatgt
     1081 tgttatgcaa ttcaattacg gctgcctttt gaatgtgagt ttacgtatgt tttatggtag
     1141 tccaatattc agtattattg tctgttgtgg gtaatctcca ctatattttg ttgtctttct
     1201 tcttcatcag tatctccttt ctgtccatgt acgtgatact gtaggttgtc tggataattg
     1261 ctattattat agttcttgaa cttccttctg ggaaatacca tttcataggg ttccaaaata
     1321 gtagtgcaaa attctaatcc cttaggggtg ggcctatata cgaaagtggt tcttttgcca
     1381 aacggctgtt catatttaag tacgaatccg tttgattcta gatcatcaag aattgatctg
     1441 tgctttttta agtttaatcc acaaaagctc aaaagcgtag tctggtttag ctcattatgc
     1501 tctactagct tcattataat atcttttaca atataaattc tatcacgata cgatgactct
     1561 gaaccagaca atttgtcccg cctttactat tatctatata cagttcgatt gccatctata
     1621 aggatagatt aactatgttc ttcatgcctg gacctacgat acgctataat agtttcgtat
     1681 ttgctaattt acatatacaa ctggcagatt attattcgtc tttctctgct ggtttcgcac
     1741 cttcaaagac aggatcataa catttttcgt tatttgagcc atatcccgtt tagctctcat
     1801 taagtcggag cgagtgacat gcccacatta taacttcaat caaccacttt attcattcag
     1861 agtcggaaac aaaccgaaac cgtatcttat ggcaatcttt ctgtccatgt cttccttttc
     1921 ctttttatat tcctcatatc ttttgctcca gggatttatc gatctgtact gtctaattcc
     1981 tgatgcaagc cagatgaatg aaataatgaa aactgctgtt agcaaaatgc ttaatgcaaa
     2041 tccaaagtca tgttctattt caagaatagt tacgaaagaa ggatgtgaaa tcaaatatat
     2101 tgaaagtccc atagcaagag gggataaaag caaagctgag atggagacta tc
//
LOCUS       DASPFX010000107         3066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1745748, whole genome shotgun sequence.
ACCESSION   DASPFX010000107 DASPFX010000000
VERSION     DASPFX010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1745748"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..1200
                     /locus_tag="VD694_02340"
     CDS             166..1200
                     /locus_tag="VD694_02340"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HXW11572.1"
                     /translation="MPTQINLFHDSLGFKQLEAILESSINQCLTPDFGNFLDGKEIIF
                     NNGETRLVPINGWHANSKYAGNPVITFDPVKENATVLAIDSSCIQIAETEEGALYAVK
                     CGIATAFQGETHAHFKMGPMLFYLSDDTLKHSELDHRIAKLVLFDSESAKRLIRIRVE
                     RGVQLEVSHCLSGAIILVDGSLTSSAWEHRDQTLRRVVENCSLYRNTIVGISKSTKLR
                     ILDKISTPLTRINRSGFIDVDLIIKGLIRNTIGDSILVKMGNSNNSPILRADVVTPGG
                     DKVRSFGKILWNDSVAKGYPETLQLAHHISTFTSTEISCIKSHVLNKYNVTELASEDI
                     RKKLLGLIPT"
     gene            1197..2696
                     /locus_tag="VD694_02345"
     CDS             1197..2696
                     /locus_tag="VD694_02345"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HXW11573.1"
                     /translation="MRILYKNNTDELVLLAIRSETASKGDYLLIQDDRSNKRMVVQIY
                     NEEYLSSQSLVEDIVKDEMVVASSVENLHDPLEIGKLSRMFRDARLFRAKIRASIDSE
                     DRFSNEVTWIPSRVHSRLNRMKISELDKLVKRTGHYSIHLGYSGRDNEEFEIYAEDLD
                     GKLNIITGRKESGKSHLSKVLIKTLVEHGAFVIIFDLNNEYSGLAWSGKGIPSSIHDQ
                     ITILEPGAGLGFSLRYCGKAAISSMLKNALDMPSASLREFFRIWDWLENKNTLDIEAL
                     GNAIKTWNTNELVRDALISRYHAICSSGLFTNALNAYQEELQFENLSLKKGNGLALVL
                     SMAKATPVVRRMIVELVLTKVVELLGKELLPPVFLFAEEAHLYVRDTYWEDIVTRMRH
                     FGIYTTFITNQPDAISDSVYRQVDNIFLFNFANDADLDKISKVSLADNDTVKSIVRTL
                     PQRQCLVIGKVVRDLPMVVNITPADILAMGESKSFFKTRSSLQGIHPVA"
     gene            complement(2713..>3066)
                     /locus_tag="VD694_02350"
     CDS             complement(2713..>3066)
                     /locus_tag="VD694_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HXW11574.1"
                     /translation="NMKRIEAVIASEKLLAINEALKNAGVGGCTVLDAKGRGKGEKPM
                     VESGRGTSRFTSEFSVRSTLITVVEDSEVDNIVNTILDVASTGSPGDGKIFISPVSDA
                     VDIGTKERGGGNVIK"
BASE COUNT          947 a          577 c          663 g          879 t
ORIGIN      
        1 tcgatgtttg agcttaattt ttacttccga agggggaggt gaagctgctt cgctcataga
       61 ggctcaaaca gccaatccca ttatatcaaa gcgataatgc atttgcacat gatgttcatg
      121 ttgcgcaaca ttaataagca tctcccgttc tatttattga acaacatgcc cactcaaata
      181 aaccttttcc acgactcatt aggtttcaaa caattagaag ctatccttga atcttcaata
      241 aatcaatgtc tgacgccgga tttcggcaat ttcttagatg gaaaggagat catttttaac
      301 aacggtgaaa caaggcttgt cccaatcaat ggatggcacg ctaacagcaa atacgcaggt
      361 aatcctgtaa taaccttcga tccggtaaag gaaaatgcta ctgttcttgc gattgattca
      421 agctgtatac aaattgctga gactgaggag ggagcgttat atgctgtgaa atgtggaatt
      481 gcgacagctt ttcaaggtga aacacatgct catttcaaga tgggcccaat gctgttctat
      541 ttgagtgatg atactctcaa acattctgag ttggatcatc gaatagctaa gttagtactc
      601 ttcgatagtg aatctgcaaa gaggctaatc aggatacggg tggagcgagg tgttcagtta
      661 gaagtctctc actgtctttc tggagccatc atactcgttg atggctcgct tacatcgtct
      721 gcttgggagc atagagacca gacattaagg agggtcgtag agaattgttc actttataga
      781 aatacgatag tcggaataag caagtctacg aaacttcgga ttctagataa aatttccact
      841 ccgttgacgc ggatcaatag atccgggttt atagatgttg atttgataat taagggctta
      901 atcaggaaca caataggaga cagcatttta gtcaagatgg gaaatagtaa taatagcccc
      961 atattgcgtg cagatgtcgt tacacctggt ggagataaag tcagatcgtt tggaaaaata
     1021 ttatggaatg attcagttgc taagggatat cctgagaccc tacagcttgc ccaccatatt
     1081 tcgactttta caagtactga gatatcttgc attaaaagtc atgttttaaa taaatataat
     1141 gtcacggagc tggcatcgga ggatattcgt aagaagctct tgggtttaat tccaacatga
     1201 gaattcttta caaaaataac accgatgaac ttgttttact tgctattaga tctgaaaccg
     1261 caagtaaagg tgactactta cttattcaag acgataggtc gaataagagg atggtagtgc
     1321 aaatatacaa tgaggaatat ctctcttccc aatcattagt tgaggatata gtaaaggacg
     1381 aaatggtggt agcctcgagt gtggaaaatc tgcatgatcc tctggaaata ggtaagctgt
     1441 caaggatgtt tagagatgca agattgttca gagcaaagat aagggcaagt attgactctg
     1501 aagatagatt ttcaaacgag gtaacatgga tcccgtctag agttcactca agattgaaca
     1561 gaatgaagat ctccgaacta gataagttag taaaaagaac aggacattat tctatccatt
     1621 tgggttatag cggacgggac aacgaagagt ttgaaatata tgcggaagat cttgatggca
     1681 aactaaacat aatcactgga agaaaggaat ctggaaaatc tcacctatca aaggtactaa
     1741 ttaaaactct ggttgaacat ggagcgttcg taattatctt tgacctgaat aacgaataca
     1801 gtggcctagc ttggagcgga aaaggtatac catcttccat acacgaccag ataactatat
     1861 tagaacctgg agcaggctta ggattttcat tacgatattg tggaaaggct gccatttcta
     1921 gcatgctcaa aaatgcattg gatatgccct ctgcatcgtt acgagaattt tttaggattt
     1981 gggattggtt ggagaataaa aatacattgg atatcgaagc tctaggaaat gcaattaaga
     2041 cgtggaatac taacgaactg gtgagagatg ctcttatctc gagatatcac gcaatttgct
     2101 cttctggcct ttttactaat gcgctcaatg cttatcaaga agagctgcaa tttgaaaatc
     2161 tcagtttaaa aaagggcaat ggattggcat tggtattaag catggctaag gcaactccag
     2221 ttgtaagaag aatgatagtg gaactggtat tgactaaggt ggtcgaactt ctaggaaagg
     2281 agctactccc acctgtgttt ctatttgcag aggaagcaca cttgtatgta agggatacat
     2341 actgggagga cattgtaaca agaatgagac actttgggat atataccaca tttattacca
     2401 atcagcctga tgccatcagc gacagcgttt atcgtcaagt agacaatatt ttcctattta
     2461 attttgcaaa cgatgctgat ttggataaaa tatcgaaagt atctttggca gacaatgaca
     2521 ccgtaaagtc catagttaga acattacctc aacgccaatg cttagtcata gggaaggttg
     2581 tgcgagactt accaatggtt gtaaacataa caccagcaga cattctagcg atgggcgagt
     2641 ctaagtcgtt ctttaaaact cggtcaagct tacagggtat ccatcctgta gcttagtctc
     2701 aatctccttt agctacttaa tgacgttacc accgccgcgt tctttagtgc caatatcaac
     2761 tgcgtcactg actggtgaga tgaatatctt gccgtcgcca ggcgatccgg tacttgcaac
     2821 atctaatata gtattgacaa tattgtccac ctcggagtcc tcgacaactg taatgagtgt
     2881 agagcggact gaaaattcag atgtaaacct agaggttccc cttccagact cgaccattgg
     2941 tttttctcct ttccctcttc cttttgcatc cagaactgtg catccgccga ctccggcgtt
     3001 ctttaaagct tcatttatag caagaagctt ttcactcgca attacggctt ctatccgttt
     3061 catatt
//
LOCUS       DASPFX010000108         2650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1461372, whole genome shotgun sequence.
ACCESSION   DASPFX010000108 DASPFX010000000
VERSION     DASPFX010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1461372"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..1093)
                     /locus_tag="VD694_02355"
     CDS             complement(161..1093)
                     /locus_tag="VD694_02355"
                     /inference="COORDINATES: protein motif:HMM:NF015126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HXW11575.1"
                     /translation="MESINFICLGQTEFVNKLGKKGQSSDITTYDSKKDDKIMTYVIP
                     TGFPDKIQPLITAVNLGEYSIVNVDKLDKYLGEQIVALDLLKLDKGFILHSYEVDSEG
                     LKSLLKNTVASSFKIEKDIESLKQSINSLAPMKRDGPTIINIDNIFNVKGVGVVVLGI
                     LKQGVIKVHDELTLFPQKKTVTIKSIQMHDKNVDESNSPARIGLALTGVSFDEITRGA
                     ILSSYPHLTSDVQELIIDFNMVPFYKNELSETHSYLLSIGTQIKSAKIQKLESNKLKI
                     LSDSIFSFKAGDIAILLNPDSRDIRIVGGGRVRV"
     gene            1266..1688
                     /locus_tag="VD694_02360"
     CDS             1266..1688
                     /locus_tag="VD694_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11576.1"
                     /translation="MTLGQKLFEEAGKISGLKVVKVHPLEGVTTEITFMSDIKGIGKY
                     PSGKNLASGTITKYPHGIIDGSWQGILTSEKDEQFMWWSHEKSRVVEGGEIRGLNITT
                     GFTNSQELSWMNSLIIVIELSGSVLSDDFKASGYEWVS"
     gene            complement(1879..2520)
                     /locus_tag="VD694_02365"
     CDS             complement(1879..2520)
                     /locus_tag="VD694_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HXW11577.1"
                     /translation="MHTYVRTLQKVATRYAPSRVLSFDIVHVFKTLQLINNKGHVSRE
                     NLCRELELGEGTVRTLIRHLKMHGMVESSNTGTKMTKKGISLFSDVLSSIPSETPLSK
                     CKITLGKHNYAILIKDMSFAVKSGIEQRDAAVKVGASGATTLLFKDNRFLIPQTNFDA
                     LKGDEELAKQLIQNLQPHEEDVIIIGTDDSSRKRAEFAAKNAALITVLSHEKH"
BASE COUNT          784 a          466 c          462 g          938 t
ORIGIN      
        1 atgtattcta ttcgataaag atactattaa gaattttcaa gtcatctaaa tgcttatttt
       61 gtttgataca ttcaaactaa aaattcttgt gtcgtctatc tatttactac atttagtttc
      121 aaacttatgt tgacatatga actttgggac cgagatatat ttatactctt actctacctc
      181 cgcccactat tcgtatgtcc ctactatctg gatttaggag gattgcaata tctcctgctt
      241 taaatgaaaa tatactatca gataaaatct tgagtttatt actttctaat ttctgaatct
      301 ttgcagattt gatttgagtt cctatggata gaaggtaaga atgagtttct gaaagttcat
      361 tcttataaaa tggaaccatg ttgaaatcaa taatcagctc ttggacatca gaggtaagat
      421 gtggatagct ggaaagaata gctcctctag ttatctcatc aaaggaaact cccgtgagag
      481 caaggcctat cctagctgga ctatttgatt catcaacatt tttatcatgc atctgtatac
      541 ttttaatcgt aaccgttttc ttttgaggga ataatgtaag ctcatcatgt actttgataa
      601 ctccctgctt aagtataccc aatacaacca cacctactcc ctttacatta aatatgttgt
      661 ctatattgat aattgttggt ccgtctcttt tcattggagc tagggaattg atactctgtt
      721 taagactttc aatatccttt tcaattttga atgaggaggc aactgtgttt tttaatagac
      781 tcttaagtcc ttcgctgtca acttcgtagg aatgaaggat aaatccttta tctaatttca
      841 gaaggtctaa ggctactatt tgctcaccca gatacttatc tagtttgtcg acgtttacaa
      901 tagaatattc tccaaggttt actgcagtaa tcaatggttg aatcttgtca ggaaagccgg
      961 ttggtattac ataggtcatg attttatcat cttttttact atcatacgtt gtaatgtcac
     1021 ttgattgccc tttcttgcct aacttgttta caaattcggt ttgaccaaga catataaaat
     1081 taatactttc cacgatgagt ttttagaagc ccatctttaa aatttattcc atttcgaact
     1141 ttatgtttag agagtcattt cttcatcacg ttctaatcag aagtggtagt taacatgtca
     1201 aaagcaaaga ttctgtccac aaatgcttcg caaaatttca aatataatgg aatatcaata
     1261 gcattatgac actaggacag aaactgtttg aagaagcggg caaaatttca ggattaaaag
     1321 tggtaaaggt tcatccacta gaaggagtaa caacagaaat cacttttatg tctgatatta
     1381 aaggcattgg aaaatatcca agtggtaaaa atcttgcctc aggcactata acaaaatatc
     1441 ctcatggaat cattgatggt tcttggcaag gtattctgac atctgagaag gacgagcaat
     1501 ttatgtggtg gtcgcatgaa aaaagcagag tggttgaagg tggtgaaatt aggggactta
     1561 atattacaac aggttttact aattcgcaag aattatcttg gatgaatagc ctaattatcg
     1621 taatagagtt atctggttct gttttatctg acgatttcaa agctagtgga tatgagtggg
     1681 tttcttaagt catcaatcaa gaaatcgtca aaataaattt atgccatagt tcatggtttc
     1741 tacagctcct attttttgag ttattgactt tagtaacata attaggattc agtgggattg
     1801 agaacgcgag cactcgagtc tttgagcccg tgaaataatt cttaattttt caatatcaaa
     1861 gggcatcgca tattcaagct agtgcttttc atgactcaag acggttatca atgcggcatt
     1921 ctttgcagca aactctgctc tctttcgtga tgaatcatct gttcctatta ttatgacatc
     1981 ttcttcatga ggctgaagat tctgaattaa ttgttttgct agttcttcgt cgcctttcaa
     2041 tgcatcgaaa tttgtttgcg gaataagaaa tctgttatcc ttgaacaaca gtgttgttgc
     2101 acctgacgct cctactttaa ctgcagcatc tctttgctct attccagact tgacagcaaa
     2161 actcatatct tttatgagta ttgcatagtt atgttttccc aaggttattt tacattttga
     2221 taggggtgtt tcagaaggga ttgaagataa aacgtctgag aataatgaga ttcccttttt
     2281 ggtcattttt gttcccgtat tggaggattc taccatacca tgcatcttaa gatgtctaat
     2341 tagcgtcctt actgttccct ccccaagttc cagttcccta cacagatttt ctctgcttac
     2401 atgtcccttg ttgttgataa gttgtaaggt tttgaacaca tgtacgatat caaaagaaag
     2461 aactctacta ggtgcatatc tcgttgcaac tttttgaagc gtcctcacat acgtatgcat
     2521 tagggatgta aatgttctca gtttttcaag tatatatttg attttagatt ctaatagtta
     2581 aaatccagtt ggataaacta tcctataatt tatatactcc gaaacctact catacggaga
     2641 tgtcgactac
//
LOCUS       DASPFX010000109         2234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_145261, whole genome shotgun sequence.
ACCESSION   DASPFX010000109 DASPFX010000000
VERSION     DASPFX010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145261"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VD694_02370"
     CDS             complement(<1..724)
                     /locus_tag="VD694_02370"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HXW11578.1"
                     /translation="MPAVLAIINNQDPAYINNKRFADSNVLHFMKKYKITSYQQLIQK
                     SNKNTEWYWDAVDRDLNLKWFKKYDRLIDQSNGISNTKWFTGGKCNIISNAIDRHLKS
                     QPNKIAYIFENAKGTTRRVSYKELAYEVNLLSCALKDAGIKKGDTVGIYMPLIPEAIF
                     AIFACSKIGAVHTTIFSGFNAQAVRSRLNDAGAKILITANKMQRRSVTINLRKQWIQL
                     LNSDISKIIVVEEKEELEKKGSE"
     gene            1090..1578
                     /locus_tag="VD694_02375"
     CDS             1090..1578
                     /locus_tag="VD694_02375"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HXW11579.1"
                     /translation="MSIRIIGAIFAIVAAIAIVGITSGLANSAMAQEQKFVATLSGQE
                     EVPPTDSQATGMAEVTVTGENAEYSVNATNIQGVTAGHIHSGKQGENGPIVVTLFKNE
                     SPTNEVSETGSVTADKLEGPMAGKQLTDLVTAMNNGTTYVNIHTEQNPNGEIRGQITS
                     SQ"
     gene            complement(1705..>2234)
                     /locus_tag="VD694_02380"
     CDS             complement(1705..>2234)
                     /locus_tag="VD694_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HXW11580.1"
                     /translation="TAVIINNKGQITSVYRKLHLYNALGFRESDKLIQGNVIEKPVST
                     SVGKIGLMICYDIRFPEMSRILTVNGADILVVPSAWVYGIMKEDHWRTMIMARAIENG
                     SYIIAPDQVGNIFSGRSMVADPFGTVLLDMGDKQGMDVVEIDKSRVMKVRESLPLLKN
                     RRLDIYRKNIQALVK"
BASE COUNT          729 a          426 c          372 g          707 t
ORIGIN      
        1 cttcagaccc ttttttttct aattcttcct tttcctcaac gacaattatt ttagagatat
       61 ctgaatttaa gagctgtatc cattgtttcc taagattgat agttacggaa cgacgctgca
      121 ttttatttgc ggtaattagt atcttagctc cagcatcatt aagacgagaa cgcaccgctt
      181 gagcattaaa ccctgaaaaa atagttgtat gaacagcacc aatcttagaa caagcaaaga
      241 ttgcaaatat tgcctcagga attaaaggca tgtatattcc aacagtatca cctttcttaa
      301 tgcctgcatc tttcaatgca cacgaaagca gatttacctc ataggcaagt tccttatatg
      361 aaacccttct tgtagttcct tttgcatttt caaaaatgta tgcgatttta tttggttgac
      421 tttttaaatg tctatctatt gcattagaaa taatattgca tttgccgccg gtaaaccatt
      481 tcgtattgga aattccattt gattggtcga taagacgatc atattttttg aaccatttca
      541 aattgagatc tctatctact gcatcccagt accattctgt atttttgttt gacttttgta
      601 taagttgttg ataacttgtg attttatact ttttcataaa gtgcaaaaca tttgagtcag
      661 caaacctttt gttattaata tatgcaggat cttggttatt gatgattgcc aatactgctg
      721 gcattataaa attcctattt aatatttaaa caataataaa tcaagagatc ttgtacttaa
      781 tattctgagc ataaatgtac taaatacgaa ttgatctgta ttgtataatt gatatagttg
      841 atattgaaat taaataatct gggcacaaac tgatgaaaat gaagttaacc accgacttcg
      901 atagagctat tacatcctga cttgagagga tatgacaaga caattaatcc ttatatcaga
      961 ataacttaga tggcaacatt ggaatctgta gcaccctatc ttcgtcctca taaagtttgg
     1021 aagttcagaa gtcccattga tttgcatagg aatttcatta aatactatat agtgcagcat
     1081 cagtatgcaa tgtctatcag aataatagga gcaatatttg caatcgttgc ggcaatagct
     1141 attgtgggga taacatccgg gctagcaaac tcagcaatgg cccaagaaca gaaatttgtt
     1201 gcaacacttt caggacaaga agaagttccg cctacggact cacaagcaac gggtatggca
     1261 gaagtgacgg taactggaga gaacgcagag tatagcgtta atgctacaaa catacaaggc
     1321 gttactgcag gacacatcca cagcggtaag caaggagaga atggcccaat agtagtaaca
     1381 ttattcaaaa atgaatctcc gaccaacgaa gtatcagaaa ctggttctgt aaccgctgac
     1441 aaactggaag gaccaatggc tggaaaacaa ttaactgatt tagtaactgc aatgaacaat
     1501 gggacaacat acgtcaatat ccatactgaa caaaacccca atggagaaat cagaggacaa
     1561 ataacaagca gtcaataacc cagggaaaca atgactaaaa atcagtcagt atttctaaat
     1621 ctctctttct tttattttgt tattatgatc gttcatgtct tttattaatt atttttaatt
     1681 aacacattgc ataggaattt tattctactt aaccaatgcc tgaatatttt tccgatagat
     1741 gtcaagtcga cgattcttca agagtggtaa agattctctt accttcataa ctctagattt
     1801 atcgatttct acgacatcca ttccctgttt gtctcccata tctaagagaa ctgtgccaaa
     1861 tggatctgca accatacttc ttcctgaaaa gatattacca acctgatctg gtgcgattat
     1921 gtaagaacca ttctcaatag ctcttgccat aatcatcgtc ctccaatggt cctccttcat
     1981 aataccgtaa acccaagcag aaggtaccac taatatatct gcaccattta ctgtaagaat
     2041 tctagacatt tcaggaaaac gaatatcata gcaaatcata agccctatct tccctactga
     2101 ggtcgaaaca ggtttttcta tgacattccc ctgaatcaat ttgtcagatt ccctgaaacc
     2161 gagggcatta taaagatgta atttgcggta tacagaggtt atttgacctt tattgtttat
     2221 tataactgca gtgt
//
LOCUS       DASPFX010000110         3551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1888473, whole genome shotgun sequence.
ACCESSION   DASPFX010000110 DASPFX010000000
VERSION     DASPFX010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1888473"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            488..706
                     /locus_tag="VD694_02385"
     CDS             488..706
                     /locus_tag="VD694_02385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11581.1"
                     /translation="MSSILSIISISALIAFAIINLNMMIVHAEDPPYCASGEGKNGVS
                     VKICSVDKEKCEENAKEHEISASCKETD"
     gene            complement(752..943)
                     /locus_tag="VD694_02390"
     CDS             complement(752..943)
                     /locus_tag="VD694_02390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11582.1"
                     /translation="MLALFLVGTVIHSSTHAESSFQICVNGKCEIVSDYEGYQNKNTC
                     VNEDCTTDLPTNSSIYEVN"
     gene            1123..1287
                     /locus_tag="VD694_02395"
     CDS             1123..1287
                     /locus_tag="VD694_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11583.1"
                     /translation="MIKQKQILGILGACFAVGGGITWFFHHYLFSSILWAIAGIIVWK
                     LNKMKRSKKR"
     gene            1455..1727
                     /locus_tag="VD694_02400"
     CDS             1455..1727
                     /locus_tag="VD694_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11584.1"
                     /translation="MQIEIDECVYWILHTVVSSDLLKYNHVTVKEENLEFIVVEAKNY
                     CIDLSGLTKIEKITGMKLLQMKSYNGLSHLWFGRKMKLVAQSHLTR"
     gene            complement(1829..2092)
                     /locus_tag="VD694_02405"
     CDS             complement(1829..2092)
                     /locus_tag="VD694_02405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11585.1"
                     /translation="MGFADVFRKWRPKGKMYSLRCNQCGKGFLSSYALEAPVCGRCMQ
                     KIKSSDSTIDYDKKCITCGNQGVIHAKSQCHSCYFGLRNNKTE"
     gene            2341..2886
                     /locus_tag="VD694_02410"
     CDS             2341..2886
                     /locus_tag="VD694_02410"
                     /inference="COORDINATES: protein motif:HMM:NF021246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(R)-hydroxyalkanoic acid synthase subunit
                     PhaE"
                     /protein_id="HXW11586.1"
                     /translation="MKDENNTLNDFTEYDIFKKWKKLQNFPTLGMFSAFTKDYNEYAE
                     DILQLNQILMDLQKYMSNYWLQMSKTQFQAIGNVLLKSRSDSKSNNPDSERFRLLVID
                     AFEEAYSALFSSKEFAVAYNEVYSKQLDFVNYINKIVEKNLNLLNIPTRSELDQVLKD
                     LQEMKKTLRNLKNGYEKPLRK"
     gene            2905..>3551
                     /locus_tag="VD694_02415"
     CDS             2905..>3551
                     /locus_tag="VD694_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HXW11587.1"
                     /translation="MIIQDKNTPIQNQIDYSKIAKTIELLSKGNHISVGDTPNEVVYE
                     TRLFRLLHYRSLVKKVSPTPILVVYALINRSYVLDLQPNKSWIRNLLTQGFDIYLLDW
                     KSPTRMDKFVSFDDYVNSYVDDCVEIVRNDNSADKITLHGYCMGSSMSAMYTALHEEK
                     IKNLVTIAPVIDTSKDTTVIANISREMDIDKLVSTIGLLPPEKLYECYSILKPFK"
BASE COUNT         1229 a          578 c          608 g         1136 t
ORIGIN      
        1 gagttagtat acattgtatg agaatattat caatgcactc gcatcaccaa tagctaataa
       61 gctaaaatga acgatattta tgtaagaatc ttactaacga tcggaacccc tccgtttcca
      121 ctctactcta tattagattt atgaacaatg ctctattaca tcaagtacgc aagatcatta
      181 catttcatga tttgccctca tatcccatct ggaaacagac aacgaatttt gatgtgattc
      241 aataatacca acgatacaag aaattttctc tctcaatatg aggtaaaatt atgctctctc
      301 tggttagaat ttagcgattg caaattagac tggatctcaa tttggtatgc tagggcacaa
      361 aatttgctgt catttgcaga ttcaaatttc taactggata catattggtt tgtgaatcat
      421 gtcaataact tgagaataga cggtgcatgg ggtttggctt aaatatcgtg atgtaattaa
      481 aaaagccatg agtagcatct tatcaattat ttcgatatcg gcactcattg catttgctat
      541 aatcaatctg aatatgatga tagtacatgc tgaagatccc ccatattgcg catctggtga
      601 gggaaagaat ggtgttagtg tcaagatatg tagtgttgat aaggaaaaat gcgaggaaaa
      661 tgcaaaagaa catgaaattt ctgcctcttg caaggagaca gattagttag tttttgtttt
      721 tagctaaatt atcttgttta ttgagtcaaa tctagtttac ttcataaatt gaactgttgg
      781 ttggtaaatc tgtggtgcaa tcttcattga cgcaagtatt cttattctga tatccttcgt
      841 aatctgaaac gatttcgcat ttaccattga cacaaatttg aaagctagac tcagcatgtg
      901 tactcgagtg gataacagta ccgactagaa ataaagcgag cattatcgga ataatccccc
      961 tatacagaga aggaaatgtc acataatgtt aacttgtgac agatatattt gagatttggc
     1021 aaaataaacg ggaagataag caatgaaatg tgtttcatac aattgtttaa ttagaagata
     1081 accagtagtt atagaaacag gatttgaaaa aaggctgact ttatgataaa acaaaaacag
     1141 atactcggaa ttttgggagc ctgctttgct gtgggcggtg gtattacttg gttttttcac
     1201 cattatctct tctcctctat cctttgggcc atagcaggaa tcattgtatg gaaactaaac
     1261 aagatgaaga gatcaaagaa gagatagccg tcttcaatct ttatgaggga tactttattt
     1321 cttattgtaa attcattatg tcgttataca atctttaagt tagttctttc aagtgatttt
     1381 tagtattaat ttttctaaat gatattatct aatttcttaa aagaaatcaa aatcgtatca
     1441 tattagataa atcaatgcaa atagaaattg acgagtgtgt ttattggata ctgcatacgg
     1501 tcgtgtcaag tgatttgcta aaatataatc atgttactgt gaaagaagaa aaccttgagt
     1561 ttatcgttgt tgaggccaag aattattgca ttgacttgtc gggattgaca aaaatagaaa
     1621 aaattactgg tatgaaattg ctacagatga aatcctacaa cgggctctca catctttggt
     1681 tcggtagaaa gatgaaatta gtggcccagt cgcatcttac cagatagtta tatgcacttt
     1741 ctattggcga aataatagat tctcatggaa ttgccataat ttgaaaaata ttagaatcaa
     1801 gtcttgttgc cacaaactct attcttttct attcagtctt gttgttcctg agtccgaaat
     1861 agcaagaatg gcactgagat tttgcatgta tcactccctg gtttccacag gtaatacact
     1921 ttttatcgta atcaatcgta gaatctgaag actttatctt ctgcatacat ctgccacata
     1981 caggagcttc aagcgcatag cttgaaagaa aaccctttcc gcattggttg catctaaggc
     2041 tatacatctt tcctttaggt ctccacttcc taaatacgtc tgcaaatccc atattcaata
     2101 taatgtcaaa agaccatatt aacgtacatt cagactctac tcaatttaac aaactaatca
     2161 tgcggccata acagttaccg ctattttccc tgtatcctgg ataaagtaat catagtatca
     2221 caaaatatga agactttata gcatttcact aatattgcaa ataaatagag aatatttagt
     2281 gtgattttta tttaaagtaa atatactaaa taatcaaatt actaaatggg ttaatagata
     2341 ttgaaagatg aaaataatac tttgaacgat ttcacggagt atgatatttt taagaaatgg
     2401 aagaaattac aaaattttcc gacactagga atgtttagtg catttacaaa ggattacaac
     2461 gaatatgcgg aagatatctt acagctaaat caaatcttga tggatctaca aaaatacatg
     2521 tcaaattact ggctgcaaat gtcaaaaacg caatttcaag caatcggaaa cgtccttttg
     2581 aaatctagat ccgattctaa atcaaataat cctgattctg aaaggtttag gctcctcgta
     2641 attgatgcgt ttgaagaggc atacagtgcc cttttttcat caaaagaatt tgctgtggca
     2701 tataatgaag tttactcaaa acaactcgac tttgtaaatt acatcaataa gatagttgaa
     2761 aagaacctta atttactaaa tatcccgact aggtccgaat tagatcaggt tttaaaagat
     2821 ctgcaagaaa tgaaaaagac tttaagaaat ttaaaaaacg gttatgaaaa accactgaga
     2881 aaataaaata ttgttatggt ataaatgata atccaggata aaaatactcc aattcagaat
     2941 caaatcgatt actccaagat agccaagaca attgagttac tatcaaaagg taatcatatc
     3001 tctgtgggag atactccaaa tgaagttgtt tatgaaacaa ggctattcag acttttacat
     3061 taccgtagct tagtaaaaaa agtttctccg actcctattc tagttgttta tgcattgatc
     3121 aatagatcat acgttttgga cttacagcca aacaaaagct ggattcgtaa tcttttaaca
     3181 caaggttttg acatatatct acttgattgg aaatcgccca caaggatgga caaatttgtc
     3241 tcatttgatg attatgttaa ttcctatgtt gatgattgtg tagaaatagt tcggaatgat
     3301 aattctgcag ataaaataac tcttcacgga tattgtatgg gatcctcgat gtctgcaatg
     3361 tatactgcat tacacgaaga aaaaattaaa aatttggtca caattgctcc agtaatagac
     3421 acaagcaaag acacaactgt tatcgccaac atatctcggg aaatggatat tgataaactg
     3481 gtatctacaa ttgggctctt gcctccagaa aaactttatg aatgttactc aatattgaag
     3541 ccctttaaac a
//
LOCUS       DASPFX010000111         2509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_872262, whole genome shotgun sequence.
ACCESSION   DASPFX010000111 DASPFX010000000
VERSION     DASPFX010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872262"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VD694_02420"
     CDS             complement(<1..270)
                     /locus_tag="VD694_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11588.1"
                     /translation="MVNPNIATIQTDTRFANKVYLLPVNGYYISQIIEKELPDSIMLG
                     FGGQTALNCGVSLHDEGVLEKYKIQVLGTPINSIKITEDRQQFKTA"
     gene            complement(406..1632)
                     /gene="carA"
                     /locus_tag="VD694_02425"
     CDS             complement(406..1632)
                     /gene="carA"
                     /locus_tag="VD694_02425"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HXW11589.1"
                     /translation="MRVKIPTIHANHIGLYATIVLEDGSTYRGIGFGYPKTVGGEFVF
                     NTGMVGYTETLTDPSYRGQILCLTYPLIGNYGVPSNLIKDSYGLPKYFESDSIQVSGL
                     IAHEISNVANHRECIKTLDQWLFDEKIPGISGIDTRDLTKKIRIKGVMKGALSVSENE
                     INTKELLSIIKKTKYDGFNFMSQVSIDRTVEYGDPTLEPIVLIDTGTKYSIIRNILRM
                     GYRVIRVPWDTSFSKIISYKPKGVIISNGPGDPKMCNSTIETVIKLFDSTLPILGICL
                     GNQIIALAAGGDTYKLKFGHRGQNKGCTDLNTNQTFITSQNHGYGVKSNTLDKTGFKA
                     WYINSDDDTIEGIQHQSKPIIAVQFHPEASPGPYDCMYVFEEFKDLVEGDIVDEKSIQ
                     ADRLNGGGKIFQKMKP"
     gene            complement(1771..2256)
                     /locus_tag="VD694_02430"
     CDS             complement(1771..2256)
                     /locus_tag="VD694_02430"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF002207.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit K"
                     /protein_id="HXW11590.1"
                     /translation="MILRRSSTEKNKEKKPVKVKKQPKVKKDVEIKDKNPQEKEKKSK
                     KTRIEKLEVVEESKSGRPKDEVVVYPEMDFESREIAPQDSQVLIGPPTLTRFERARII
                     GARSLQLSLGAPTLVDSSKKFNDTISIAIAELSLKVLPISIRRVLPNGLYQDIPIDWL
                     K"
     gene            2290..>2509
                     /locus_tag="VD694_02435"
     CDS             2290..>2509
                     /locus_tag="VD694_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11591.1"
                     /translation="MLLINQQINSNAKSTLHLHMTWSNPNSVSRIRVVLEAREKGKIT
                     LELVRHLSPITFLKIIKAMPISGRLHFLD"
BASE COUNT          709 a          486 c          422 g          892 t
ORIGIN      
        1 agccgtctta aattgttgac gatcttcggt aatcttaatg ctatttatgg gggtacccaa
       61 tacttgaatc ttgtactttt ctaagacgcc ttcatcatgt agtgaaactc cacaatttaa
      121 tgcggtttga ccaccaaagc ctaacataat tgaatccggg agttctttct ctattatttg
      181 gctaatgtaa tatccattta ctggtaacaa atatacttta ttggcaaatc tggtgtctgt
      241 ttggatggtt gcaatattgg gatttaccaa tactgttttg attccttctt cggataaagc
      301 tttgaggcat tgtgaaccgg aatagtcgaa ttggcggtca gaatttctga ctttcgcccg
      361 cttctccgat ttttattgct ccacttccta atactattgt tttctttatg gtttcatttt
      421 ttggaaaatt ttcccacctc catttaacct atcggcttga atagacttct catcaacgat
      481 atcaccttca acaagatcct tgaactcctc gaaaacatac atgcaatcat aagggccagg
      541 agatgcttct gggtgaaatt gcactgcaat tatgggtttt gactgatgtt ggataccttc
      601 aatggtatcg tcatcagagt taatatacca agccttaaat ccagttttat caagtgtgtt
      661 tgattttacg ccatatccat gattctggct ggtaataaag gtttgattgg tatttagatc
      721 tgtgcatcct ttattttgac ctctatgccc aaatttcagt ttgtaagtgt ctccacccgc
      781 agcgagtgca ataatttggt ttcctaaaca tattcctaat attggtaatg ttgaatcaaa
      841 caatttaatg acagtttcta tcgtgctatt acacattttc ggatctccag gaccgttact
      901 tattataacg ccttttggtt tgtatgaaat aatcttactg aacgaagtat cccatggaac
      961 tcgaataact ctatagccca tacgcaggat attgcgaata atgctatatt tcgtaccggt
     1021 atcaattaga actataggtt ctagagttgg atctccatat tcgactgttc tgtcaatgga
     1081 tacttgagac ataaaattaa atccatcata ttttgtcttc ttaatgatac tcagcaactc
     1141 ttttgtattt atttcatttt ctgaaactga cagggcacct ttcattacac cctttatccg
     1201 aattttcttt gtcaagtcac gtgtatcgat tccactgata cctggtattt tttcgtcaaa
     1261 tagccactgg tccagagtct ttatacattc tctatgattg gctacgttag atatctcatg
     1321 agctatcaat ccagaaactt gaatactatc agattcaaaa tattttggca atccgtagct
     1381 atctttgatt aaattgcttg gaacaccata gttcccaatg agtggatagg tcaaacaaag
     1441 gatttgtcct ctatatgatg gatcagttag agtctcagta taaccgacca tacctgtgtt
     1501 aaaaacgaat tctccgccaa ctgtctttgg atacccaaaa cctatacctc gatacgttga
     1561 gccgtcttct agaactatcg tcgcataaag gcctatgtga ttagcatgaa ttgtaggaat
     1621 tttgaccctc atagagttgt aaaatatcga gatttaaatt tacctaactt gaataatgta
     1681 aatacacaca attaatatgc atattcgatg atgactatca tcgggtcgtt aggagaaaaa
     1741 attgtggata cacttttgaa tttgtcttgc ttattttagc caatctattg ggatgtcttg
     1801 atacaaccca tttgggagta ctcttcttat ggaaatcggt agaactttca aactcagttc
     1861 cgctatcgca attgaaatag tatcgttaaa cttttttgaa gaatcaacta gtgtcggtgc
     1921 accaagagat agctgcaatg accttgcacc tattattctg gctcgttcaa atcgagtcaa
     1981 tgttggtggg cctatcaaaa cctgactatc ctgaggagct atttctcttg attcaaaatc
     2041 catttctgga taaactacta cttcgtcttt tggcctacca ctctttgatt cttcgacaac
     2101 ttctaatttc tcaattctgg tttttttaga tttcttttct ttttcttgag gattcttatc
     2161 ttttatttct acgtctttct ttactttggg ctgttttttt actttgacag gttttttttc
     2221 cttatttttt tcagtgctag aacgtcttaa aatcaagaat aaaagcaaaa aaagtgaata
     2281 tataattaaa tgttgctaat aaatcaacaa attaatagta atgcaaaatc tactttacac
     2341 ctgcatatga catggagcaa tccaaactcc gtctcaagga ttcgtgttgt gctagaggct
     2401 agagaaaagg gcaaaataac gctagaactt gtgcgtcatt tatcgccaat cactttttta
     2461 aagatcataa aggcaatgcc aatttcaggc agactacatt ttttggacc
//
LOCUS       DASPFX010000112         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2029819, whole genome shotgun sequence.
ACCESSION   DASPFX010000112 DASPFX010000000
VERSION     DASPFX010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2029819"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..415
                     /locus_tag="VD694_02440"
     CDS             110..415
                     /locus_tag="VD694_02440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11592.1"
                     /translation="MISSDSNNDIGQGNRRVSNSDSNRIPNEQDEKKVKDLNREIMMI
                     FQMYKASYGHTSAALLSVLSYLSDNYLTQHPENKQILYEYFEKEFKKFLNMIEKHQS"
     gene            700..873
                     /locus_tag="VD694_02445"
     CDS             700..873
                     /locus_tag="VD694_02445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11593.1"
                     /translation="MSDKKEIQPGLDAEDAKKLELDEEPKPTRKVSHPYTPISNKDEP
                     STHDKRKGRRTIK"
     gene            complement(1028..1549)
                     /locus_tag="VD694_02450"
     CDS             complement(1028..1549)
                     /locus_tag="VD694_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11594.1"
                     /translation="MIRKQMTMPLAVAGIALLATLMAISSPTQALALGHWNLDEDFIP
                     NSGTAEDVADSSETDEHTEGEEEESTTAVTTDEDDDEASQDGSDDSGGNEDSSHAAYD
                     ALQACLSDVEEVGSPTEQQVQDCMESSYREMDNNEEDSMENTSDDDEDNTETTQDVST
                     DDADDEEDEDSEE"
BASE COUNT          654 a          403 c          388 g          678 t
ORIGIN      
        1 agagtaggat gatgacagta aagtcgcttt agatctttac tgaaatgatt caataattct
       61 aaatttgttg aacctagaag tactataaga ttcacaataa tatctagtta tgatctctag
      121 cgactctaat aatgatattg ggcaaggtaa tcgtagggtt agtaacagtg acagcaatag
      181 aataccaaac gaacaggacg aaaagaaagt taaggaccta aacagagaaa tcatgatgat
      241 ctttcaaatg tacaaagcgt cgtatggcca tacctctgct gcattattga gtgttctgtc
      301 ttatttatca gataattatt tgactcaaca tcctgaaaat aagcagatct tatatgagta
      361 ctttgaaaag gagtttaaga agtttttaaa tatgattgaa aaacatcaga gttgatgtgc
      421 tttgtctttt tctgctaatc tttattttca tgctaagccc atagtccttt ccttcagtct
      481 ttaatttcct actgacaaat gggtaatcat caagaagtta ggtgataact cgattgaaat
      541 aatttgtata gtatgtgagc caaattaact aataacaggt ccccaggaaa ccggatagct
      601 tatgcgctaa ataatctatt gaaatcgtaa cgttataaga ttttttagaa ctatcataat
      661 atacaaccct tcatacaata catgatcata tgaagaacaa tgagtgacaa aaaagaaatt
      721 caaccaggat tggatgcaga agacgcaaag aaacttgaat tagatgaaga accaaaaccc
      781 acaagaaaag ttagccatcc gtatactccc atatcaaata aggacgagcc tagtactcac
      841 gacaagagaa aaggaagaag gactataaag taattagttt aattgataat ttatatgttt
      901 tattttttgg gagtccaaac atgacctaca atcaggaaag aggtatacaa aattacttaa
      961 cttagtctac caccaaaaat aaagagggaa agggtttcac gtaatccatg caagtctgat
     1021 cctcggatta ttcttcgcta tcctcgtctt cttcatcatc tgcatcatcg gtagaaacat
     1081 cttgggtcgt ttccgtattg tcttcatcat catcacttgt gttctccatc gaatcttctt
     1141 cgttattgtc catttctcta taacttgatt ccatacaatc ctgtacttgc tgttccgtag
     1201 gagatccaac ttcttcaaca tcagaaagac atgcttgtaa ggcatcgtag gccgcgtgag
     1261 acgagtcttc gtttccacct gagtcatcgc taccatcctg cgaggcttca tcgtcatctt
     1321 catctgtcgt tactgcagtt gtgctttctt cctcttcccc ttcagtgtgt tcatcagtct
     1381 cagagctgtc cgctacgtcc tctgctgtcc cgctattggg gataaagtct tcgtccaggt
     1441 tccagtgacc taaggctagc gcttgtgtcg gtgacgatat tgccataagt gtagccaata
     1501 atgcgatacc agctacggcc aatggcattg tcatttgttt tcttatcatc tttctcagtg
     1561 tgcaagccat atcaactgat taaacagttg acgaccattc gtagcgttaa ttttgattag
     1621 tatttgacat tgtattttgt gtccatccaa gaactgatga tagtggtatt caacaaaggc
     1681 actgtatatt taatagtagt ctatctgaag gagcatggtt cgaatactaa atatttctta
     1741 gaatcaagat tgaaaatcct ggcaactgtg gcattcaatc tatagagttt cactctaatt
     1801 ctatttatat ttctgctgct cttctagtta tttcagttat ttttacgttg gctgcgtaag
     1861 agacatgctt tttgtggtag gccgttagct tgtggatctg aaaaaaggtc agtctcgaga
     1921 tatcgcagag aaaatattgc aattttatac aaagtaatcc aggttgccac ttacgtatta
     1981 ccacacagat acctattggc gaaagagtta tgtgcgcaaa taatgtgact tcatttctct
     2041 actatgcaga gatgatctca ctgattcctt ttggacataa ttgaccagcc attcctgaat
     2101 atacgcagat agttagtcat ata
//
LOCUS       DASPFX010000113         3453 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_337199, whole genome shotgun sequence.
ACCESSION   DASPFX010000113 DASPFX010000000
VERSION     DASPFX010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337199"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..901)
                     /locus_tag="VD694_02455"
     CDS             complement(<1..901)
                     /locus_tag="VD694_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HXW11595.1"
                     /translation="MRQYSGEFLCKKCFIKSVEYKAKRTISKYSMIKHGDIVAVAVSG
                     GKDSLVLLNILKNTLGNQNPELVAITVDEGIKGYRDESLDIVKKFCAGIGIKNRIMSF
                     SDLFGLSMDKAMEIRPSEKTSSCSMCGTFRRRALDLLAESCGANVIATGHNLDDYIQT
                     FLINMFAGDVERIGWAYPEPVEYGVADLRKIKPLMEIYEREIVLYAIHTNIPFQSEEC
                     PYKDESIRSAFRSHLNNLEKIHPGIKYNAYSSILKIAKKVRSANSLSYSNANDGIRQE
                     HKRCIVCNRDSSNRICSVCSTIDL"
     gene            1078..1557
                     /locus_tag="VD694_02460"
     CDS             1078..1557
                     /locus_tag="VD694_02460"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HXW11596.1"
                     /translation="MTASHDVIDEINLKIINILNKDSSLPFVEIAKQIGISDATVHIR
                     VRRLIAAGIIKKFTISLDNNKLGYDHLAFMGINIEPGTADEVTNSLSSIEEVLEIHEM
                     HGRFDLLLKIRAKNLEEMRDIVVNKIRKLPRIIETELMTALKTRKEDHMVSVMDPAV"
     gene            complement(1581..1796)
                     /locus_tag="VD694_02465"
     CDS             complement(1581..1796)
                     /locus_tag="VD694_02465"
                     /inference="COORDINATES: protein motif:HMM:NF019876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HXW11597.1"
                     /translation="MSNFCPECGGELKLDTATKNFICKSCGLFASREKMDELRDKTFR
                     DQGNDRKKYHDDYLDWWTSSKKDKQRM"
     gene            complement(1878..2744)
                     /locus_tag="VD694_02470"
     CDS             complement(1878..2744)
                     /locus_tag="VD694_02470"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HXW11598.1"
                     /translation="MSLRGITVAITASRRASELANLVQKFGGIPYIVPTIGIKNNKPL
                     NSECDQFIETISNDKMHFFIFMTGVGVFNLFQNLQKSHRLNTVNEKLQDTIVIARSNK
                     PKMELRKFGIKTNYVPNINTIEAIFNLLNSFDVKNKNIGILWHGDSSDPFKKKLESRG
                     ANVFDFSSYSYSNSLEQKNATMLKEMGYDYVAPNEKKIVSLIEDIMNGTVDSITFTSP
                     PAAKEFFVLAKRKNKFNSLKDKLNNTVLVVSVGPSTSNMLAQFHVLVDIMPTTYRMGP
                     MIKELAEYISSF"
     gene            complement(2976..3359)
                     /locus_tag="VD694_02475"
     CDS             complement(2976..3359)
                     /locus_tag="VD694_02475"
                     /inference="COORDINATES: protein motif:HMM:NF014091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF126 domain-containing protein"
                     /protein_id="HXW11599.1"
                     /translation="MGGTAKGMILLTTQPINFLSSVDNMTGEITDKNHELFGKFLKGN
                     ILIFPYSVGSSVGAYSIFALKSNNASPSGIICSLKTDITTASGCAISNIPLLELCKDQ
                     VIPEIEIPSQGVIDGSLGFLQIKKI"
BASE COUNT         1054 a          677 c          546 g         1176 t
ORIGIN      
        1 acaaatctat ggtactacat actgagcata ttctattgga tgagtctcta ttgcatacaa
       61 tacatcgttt atgctcctga cgaatcccat cattcgcatt tgagtaacta agagaatttg
      121 cagatcttac tttcttcgca attttcaaga tagagctata ggcattatac tttatacccg
      181 gatgtatttt ctcaagattg ttcaagtgac tcctaaatgc acttcttata ctttcgtctt
      241 tgtatggaca ttcttcagat tgaaatggaa tattcgtatg aatcgcgtat aatacaattt
      301 ctctttcgta tatttccatt aatggtttga ttttccttag atcagctact ccatactcta
      361 ctggttctgg atacgcccaa ccgattcttt ccacatcccc tgcaaacatg ttaatgagaa
      421 atgtctggat gtaatcatcc aaattatgac ctgtggcaat tacatttgcc ccgcaagatt
      481 ctgcaaggag atctagggct ctcctccgaa aagtcccaca catggagcaa gatgaagtct
      541 tttctgaagg cctaatctcc atagctttgt ccattgatag cccaaaaaga tcactaaaac
      601 tcattattct atttttgata ccaattccag cacagaattt ctttacaatg tctaatgatt
      661 cgtcacgata acccttaatt ccctcgtcga cagttattgc cactagttca gggttctgat
      721 taccaagtgt attttttaat atgtttagga gaacaaggct gtctttacct cctgagactg
      781 ccactgcaac aatatccccg tgttttatca tggaatattt tgatattgtc ctctttgcct
      841 tgtactcgac tgatttgata aagcattttt tacacaaaaa ttctcccgaa tactgcctca
      901 agtaaataga gggatttttc ttgcacttgc tacactcttt ggacatcaga atatgatttt
      961 cttggcgcca tagatcttta atacttttat agtcgatcaa gattggcgaa ttatcactta
     1021 tcaatggcga taatttctaa aagcatttaa gtatataatt acaaactact ttttgagttg
     1081 acggctagtc atgatgttat tgatgaaatt aatcttaaaa tcattaatat attgaataag
     1141 gattcttctc tgccctttgt tgaaattgca aaacaaatcg gcatatccga cgctaccgta
     1201 cacatacgag tcaggcgatt gatcgctgct ggtataatca agaaatttac catatccttg
     1261 gacaacaata agcttggtta tgatcacctt gcgttcatgg gaatcaatat agaacctgga
     1321 actgccgatg aagtaaccaa tagtctctca tcgatagaag aagtgctgga aatacacgaa
     1381 atgcacggta gatttgatct actcttgaag ataagagcca aaaacttgga agaaatgcga
     1441 gacattgtag taaacaagat aagaaaactt cctagaatta ttgagacaga actgatgacc
     1501 gcactaaaga ctaggaaaga agatcacatg gtatcagtaa tggatcctgc cgtgtaaaca
     1561 caatatctct attttaatgt ctacatcctt tgcttgtctt tctttgatga agtccaccaa
     1621 tcaagatagt cgtcatgata ttttttccta tcattacctt gatctctaaa agtcttgtct
     1681 cttaactcat ccattttttc cctggatgca aaaagaccac agcttttgca tatgaaattt
     1741 ttggtggcag tatccaactt taattcccca ccacattcag ggcaaaaatt agacaattta
     1801 tttattatta atcagacttc ataaaaaatg ttacgtggaa ttcataatga tttcgcatat
     1861 taccaggaaa ttggttgtta aaatgacgaa atatattctg ccaattcctt tatcatgggc
     1921 cccatacgat aagtagtcgg cataatatct accagaacgt gaaattgtgc aagcatgttt
     1981 gaagtagatg gacccactga cactacaagt acagtgttgt tcaacttgtc ttttagcgaa
     2041 ttaaatttgt tttttctttt tgccaataca aagaattctt ttgctgccgg tggacttgta
     2101 aatgtaatac tatctaccgt accattcata atatcctcaa tgagacttac gatttttttt
     2161 tcattaggcg caacatagtc atatcccatt tcctttaaca ttgtagcatt tttttgctca
     2221 agactattgg agtaagaata cgatgaaaaa tcaaagacat ttgctcctcg tgattcaagc
     2281 tttttcttga atggatctga tgagtctcca tgccatagta ttccaatgtt cttattttta
     2341 acgtcaaaac tattcaatag gttaaatatt gcctctatcg tgttgatatt aggaacatag
     2401 tttgttttta ttccaaattt tctaagttcc attttaggtt tgttacttct ggctattact
     2461 attgtatctt gcaatttttc gttcactgtg ttcagcctgt gtgatttttg aagattttga
     2521 aacaagttga atacaccaac gcccgtcata aaaataaaaa aatgcatttt atcattacta
     2581 atggtttcta tgaactgatc acattcggag ttcaacggtt tgttattttt aattccaata
     2641 gtcggaacaa tgtatggaat tcctccgaat ttttgaacaa gattcgcaag ttcagaagct
     2701 ctcctgctag ctgtaatagc aaccgtaatc ccgcgtaatg acatgaaaca atcatgcaat
     2761 ctttgaatta ttaaaacttg agcttatgac tgaaaggctt aattcaaaaa aaaaattcca
     2821 ataatcatat tcacgaaatc tcatagttga cccgccattg caagcttgaa ttgaataaca
     2881 tggaaggtgc atggactttt ctcatcatcc cctttatttg gatctggtcg cccgtcaaat
     2941 gccatgcacc ttttgaaata attaatcaaa taaaattaaa tctttttgat ttgcagaaat
     3001 cccaaactgc catctattac tccttgacta ggaatttcaa tttctggaat tacctgatct
     3061 ttgcaaagtt ctagcaatgg tatattcgaa attgcacaac ctgatgcagt cgtaatatct
     3121 gtctttaaac tacatattat tcctgatggt gaagcattgt tcgattttag tgcaaaaatt
     3181 gagtatgctc ctacactact tccgacggag tatggaaata tcaagatatt gcccttcaga
     3241 aattttccaa acaattcatg gttcttatcg gttatctctc ctgtcatatt atctactgaa
     3301 gataagaaat tgataggctg tgtggttagc aaaatcattc cttttgccgt accacccaca
     3361 atcgttttac acttaagtga atactccaaa ctatatccat taccttgcat aatcccttat
     3421 tatggatttt aaatccttca agcacactga aac
//
LOCUS       DASPFX010000114         7185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_671210, whole genome shotgun sequence.
ACCESSION   DASPFX010000114 DASPFX010000000
VERSION     DASPFX010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7185
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671210"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..705)
                     /locus_tag="VD694_02480"
     CDS             complement(112..705)
                     /locus_tag="VD694_02480"
                     /inference="COORDINATES: protein motif:HMM:NF025825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HXW11600.1"
                     /translation="MKHNTDFEGELCPSKEFSDKELEQVKKIEHRLDNDEQVQFIARQ
                     SKHRPGDSITTPDTIFVTNKRIVIRDPSLLGVRENIVSFSYDKITLIELERGVFSSKI
                     IIRAPGFANEMEAISKKAAEQIIQYVKNSMDKIERQSQKQSLEVKESIVDELLKLANL
                     KEKGVVNEDEFLKMKQDLLKTSSFSLKIFIFYQQMTE"
     gene            1069..1287
                     /locus_tag="VD694_02485"
     CDS             1069..1287
                     /locus_tag="VD694_02485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11601.1"
                     /translation="MIVFSINLPVLIVLWWIGAIVAGLSLLIPQYTHYLIAGSLGWIT
                     VVIASGLIIYAIKRNNEESQRNMSSNLS"
     gene            complement(1280..1534)
                     /locus_tag="VD694_02490"
     CDS             complement(1280..1534)
                     /locus_tag="VD694_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HXW11602.1"
                     /translation="MSTAYILVNCTLGSEERIIDEISKLSDVKEVRGTYGVHDVFVKV
                     KSDNTETMNHTITSRIRKIPGITSTVTLVVIEEQGGKEIS"
     gene            complement(1607..2425)
                     /locus_tag="VD694_02495"
     CDS             complement(1607..2425)
                     /locus_tag="VD694_02495"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HXW11603.1"
                     /translation="MTRNNKEVDEIKTQNVIKRSPFISMITDEKKDQVESEVIYDTDT
                     QIKQTQNRIWKALKRRYQYDSNIEPGQNFLKNHVNSKIPLVILYVDLVGSTNLSMTIP
                     VDKLVTIIRAFTYEMSSTVYRYGGFVLKYVGDAVIAFFPSLSNKFVVCDRAVRCGISM
                     LTIIKNGLNPILNQYDYPDLSAKIGIDEGENIIVQYGHDQNSPLDILSYCMSVSAKMT
                     SLTKSNNITIGDDVYVRLHPELRQKFVRVNYSAREWNYVSKRTGELYKLYTLKQ"
     gene            2635..3495
                     /locus_tag="VD694_02500"
     CDS             2635..3495
                     /locus_tag="VD694_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11604.1"
                     /translation="MRIPNNADNDFAKKLNRYFAEIEDVYLQGMKQALTTTEVNVMLQ
                     DGSVTKTMTFDPQLVIGYYRSFLKDLKNWEVGDIQETTGDLNRIYCQISANLDSYVIK
                     GFFGIQYHILPYYKPDKQVIQIQKELIDLSINNSSQLESVANIGNNTIKQELKNMALD
                     ELAFEDLFERLLDNQELISKLEHKIRNVEKIYPELEGAEKKRNSLIHKLDNLIMKVYQ
                     VSPILIDYNKLIQGEEGIIVYFDIEPGVDPKAKKSTSKTVDLSRMKPPMMKRIGEFFK
                     EIGPALQIQK"
     gene            3558..4805
                     /gene="ilvA"
                     /locus_tag="VD694_02505"
     CDS             3558..4805
                     /gene="ilvA"
                     /locus_tag="VD694_02505"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006549 - isoleucine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HXW11605.1"
                     /translation="MNNLSKMYLKGKIPSVDDIVRAQKLMDKTHVKRTPLLKSNTFSK
                     SARTNIFLKYESFQKTGSFKVRGAYSKINSLTDEQCKAGVIAASAGNHAQGVAYAAFK
                     RNIKCNIVMPKNASPAKVAATRSYGANVILSGDTYDESWKTADLLAGENGYSMIHAFD
                     DPVVIAGQGTIGLELMEDLRNIDTVYLPLGGGGLASGVSIAIKTKRPNVKIIGVESNQ
                     FPAMKKSLDNGSLCHITGGFTIADGISVKSPGELTYEICSKYLDDVVTVDDVAIVETM
                     FTLMEREKVVVEPAGAASLAYVLSSGKVKNNRNIISILSGGNIDMYLLGQIVSKGLMQ
                     MGRLVKIFIQLPDKPGALKGVVDKIAELSVNIVQVEHDRLSSNVAAGSAGVYLSLELE
                     DERHSKRLLDFLKKEKMVFKVVP"
     gene            complement(4802..6226)
                     /locus_tag="VD694_02510"
     CDS             complement(4802..6226)
                     /locus_tag="VD694_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HXW11606.1"
                     /translation="MSIMRKIVNMPAGIDDLAIYVPKLYIDYKDFAQARGIDPQKLEH
                     GIGIKKMALVDTNQDSACMASNACLELMKKNNLHPDDIGRLYVATESSIDESKALNSF
                     VVGMLEQVYGDSSFEHAGGIECKFACVSGSYAIYDNTNWIRADENNEKAAIVVVSDIA
                     KYDVGSAGEYTQGAGAVALLIKEDPRLLVLDPKVTSTIIKNEYDFYRPFGKETPLVNG
                     LYSNLLYLIQVRKAFDSYKEKAMRTGLIHLKDGESITDYIDLFTVHLPYRRMGEKALA
                     YLLRHEWRTLPRWQHVIKEIGFDEPVPNDSRGTIESILADKEFMRADEQFRKSFMQTS
                     FYNEVYEKKMASSLEASNMIGNLYTASMYMGLRSLLEYEFKKNNDIEGFRVGFGSYGS
                     GSSAMVFSGVIQPSYKEIVKSMNLEEEIGSRKKLSMEEYQILRENQRNLNDSYARAKN
                     EFVLVKIGGSTADKAGFREYCYCS"
     gene            complement(6424..>7185)
                     /locus_tag="VD694_02515"
     CDS             complement(6424..>7185)
                     /locus_tag="VD694_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CofH family radical SAM protein"
                     /protein_id="HXW11607.1"
                     /translation="GHNPELKLEYYEQAFRTIKDKCPDVAIHGLSASEIDTISKVERS
                     TTREVLSRLKDSGLDSLPGAGAEILDDDVKSRISPLKIKSEEWLNIMRQAHELGIKSS
                     ATMMYGTGEDYEQRARHLIKIAELQEKTHGFMSFIPWSFEPNNTKMQEDGMIKYPSGG
                     LELLKMIAISRIVYSGLIDHLQSSWLTNGIGMAQLALTYGADDFGGTLIGEEVVSATG
                     ARSTELTADKIIAAIKQIGFDAHERNNFYETIRVH"
BASE COUNT         2220 a         1332 c         1238 g         2395 t
ORIGIN      
        1 gggtgaagct gaagaccgag ctgtcgtgag ctcaaatctc accgacggca tatacttttt
       61 caatgtcaca accatcatct gtttacatta gtataatttc aagaaatcag tttactccgt
      121 catctgttga taaaatatga aaattttgag actgaaacta ctcgtcttta acaaatcttg
      181 tttcattttt agaaattcat cctcattcac aactcccttt tccttcaggt tggccaattt
      241 gagcaattca tcgacaatag attctttgac ttcaagcgat tgcttttgtg attgcctttc
      301 gattttgtcc atcgaattct tcacatattg aataatttgc tctgccgctt ttttagatat
      361 ggcttccatt tcgttggcaa atcctggggc ccttattatg atcttggatg aaaaaacccc
      421 tctctctaat tctatcaagg ttatcttgtc ataggaaaaa gatactatat tttccctaac
      481 accaagtaat gatgggtctc taattacaat tctcttattg gtaacaaata ttgtatcggg
      541 agttgtaatt gaatcaccag gtctgtgctt agattgtcta gcaataaatt ggacttgctc
      601 atcattatct aacctatgtt ctatcttttt aacttgttcc aattccttat cgctaaattc
      661 ctttgaagga caaagttctc cttcaaaatc agtgttatgc ttcaatgcgt gatagattta
      721 tgaccaatta ttaagccttc atacaaaaaa atgctattgc tatatcattt tcacagtggc
      781 catatcgctc ctgggctttt tggtactttg gattttactc ccattattca tttcccagaa
      841 tttgtcaaat ttttgatact aaaacaaaat cgttataatg tctgtgtgtt caagaaacat
      901 aaggatgaca aatccactat taatagcatt caagcggatt ttttgtaatc atgaaaattc
      961 tttttcattt aggaaatata acgactttga tttttatgag tatgataaat gtgtaaactg
     1021 tgaaaaaatt ttgagatata tacgaggttt tgacgaaagc attagagggt gatagttttt
     1081 agtatcaatc ttccagttct aattgttctg tggtggatcg gagccattgt agcgggcttg
     1141 tcactcttaa taccgcaata cacacactat ctgatagccg gttctcttgg atggataacc
     1201 gttgtaatag cctcaggtct aataatatac gcaataaaaa gaaataatga agagagtcag
     1261 agaaatatgt cgtctaatct tagctaattt cctttccgcc ttgttcttct attactacaa
     1321 gagtaacagt tgatgttata ccaggtatct ttcttattct gctggtaatt gtatgattca
     1381 ttgtttcagt attgtctgat tttaccttga cgaatacatc atgtactcca taggttccgc
     1441 gaacttcttt tacatcggag agttttgaaa tttcatctat tattctctct tcagagccca
     1501 atgtacaatt tacaagtata tatgcagtag acaataatga ttctagaaat ttaatgtatt
     1561 ttagtctttt ctataaactg gagtatctaa ataacaaaca acttcactat tgtttcaaag
     1621 tataaagttt gtaaagctcc ccagtacgtt tactaacgta attccattct cttgcactat
     1681 aattcactct tacaaatttt tgtcgcaatt ctggatgcaa cctaacatac acatcatctc
     1741 ctattgtgat gttgtttgat tttgttagtg aagtcatttt tgctgaaaca ctcatgcagt
     1801 aactcaagat atcgagtggt gaattttgat catgaccgta ctgtacaata atgttttccc
     1861 cttcatcaat tcctatcttt gcacttaagt cggggtaatc atattgattt agaattggat
     1921 ttagtccatt ctttattatt gtaagcatag agattccaca tctgacagct ctatcacata
     1981 ctacaaattt attcgataat gaagggaaga atgcaataac tgcatcacct acatatttta
     2041 gaacaaatcc tccatatctg tagactgtgg atgacatctc ataggtaaac gcacggatta
     2101 ttgttaccaa cttgtctact ggaatcgtca ttgatagatt cgtagatcct accaagtcta
     2161 cgtataatat gaccagtggg attttagaat tcacatgatt ttttaggaaa ttttgtccag
     2221 gttctatatt tgaatcgtat tgatatctcc ttttaagtgc cttccatatt ctgttttgtg
     2281 tctgtttaat ttgggtatct gtgtcgtaaa taacctccga ttctacctga tccttctttt
     2341 catctgtaat catagaaata aaaggcgatc tcttaatcac gttttgagtc ttaatttcat
     2401 caacttcctt attatttcta gtcatatata cacgctaacc gatcttcttg atagttctca
     2461 actaataata agatattgaa gaattgacag gctggaaaat tcgaattagc aatagtgaaa
     2521 actactattc atatatggat agaaccaaag aattttggac cagtaataaa tagcaggcat
     2581 gagcaaagac taattaggac taaagtttat cttgattaag gacgcctatt tttcatgaga
     2641 attccaaata atgctgataa tgattttgcc aagaaattaa atcgatactt tgccgaaatt
     2701 gaagacgttt acttacaagg catgaaacag gccctaacta ctacggaagt aaatgtcatg
     2761 ctccaagatg gctctgttac aaaaaccatg acctttgatc cgcaattagt tattgggtat
     2821 tatcgttcct tcctaaaaga tctgaaaaac tgggaagttg gcgatattca ggaaacaaca
     2881 ggggacctaa atagaatata ttgtcagatt tctgctaatc ttgatagcta cgtgatcaag
     2941 ggattttttg gaatacaata ccatatttta ccatactata aaccagacaa gcaagtcata
     3001 cagatacaaa aggaactaat tgatctttcc attaataact cctcacaatt agaatcagtt
     3061 gcaaatattg gtaacaatac aataaaacag gaactaaaaa atatggcgct agatgaatta
     3121 gcgtttgaag acttgtttga aagattactt gataaccaag aattaatcag taagttggaa
     3181 cacaaaataa gaaatgtcga gaaaatatat ccagaattgg aaggagcaga aaaaaagagg
     3241 aattctttga ttcacaaact agataatttg ataatgaagg tctatcaggt ttctccaatt
     3301 ttgatagatt ataataaact catacagggt gaagaaggta ttattgtcta ttttgatata
     3361 gaacccggcg ttgatccaaa agcaaagaaa agtactagta aaactgtaga tctctcccgc
     3421 atgaagcctc caatgatgaa aagaattggt gaatttttta aggagatagg tccagcatta
     3481 cagattcaga aatagtagac gcaatttgta gcccaataaa acaaaattca taatgttggt
     3541 cgaataaggg tatttgattg aacaatctta gcaagatgta tttgaagggt aaaattcctt
     3601 cggttgacga tatagtcagg gctcagaaat taatggataa gacacacgtc aaaaggactc
     3661 cattattaaa gtcaaacaca ttttcaaaat ctgcacgaac aaacatcttt ttgaaatatg
     3721 aatcatttca gaaaaccgga tctttcaaag ttagaggagc gtattcaaaa atcaattcac
     3781 ttactgatga gcagtgcaaa gcaggggtaa ttgctgcttc ggcaggcaat catgcacaag
     3841 gtgtcgctta tgccgcattc aagagaaaca taaaatgtaa tattgttatg ccaaaaaatg
     3901 catctcctgc aaaggtggca gctacacgct catatggagc aaatgtgatt ctctctggtg
     3961 acacctacga tgaatcctgg aaaacagctg acttgttagc tggggagaat ggatattcta
     4021 tgatacatgc atttgatgac cctgtagtga ttgcaggtca gggcactata ggtttggaat
     4081 tgatggaaga tttgaggaat attgatactg tttatttgcc acttggaggc ggtggacttg
     4141 cctcaggagt gtctatagcg attaagacca aaagacctaa tgtcaaaatt atcggagtcg
     4201 agtctaacca atttcctgcg atgaaaaaat cacttgataa tggcagtctt tgtcatatta
     4261 ctggaggatt tactatcgct gatggaattt cagtcaagtc tcctggtgaa ttaacatatg
     4321 aaatttgctc aaaatatttg gatgatgtag ttactgtaga tgatgttgct attgtagaga
     4381 ccatgtttac tcttatggaa agagagaaag ttgtcgttga acctgcagga gcagcaagtt
     4441 tagcatatgt tctttcaagt ggtaaagtaa aaaataatcg aaatattatt tcaatcttat
     4501 ccggtggtaa tatcgacatg tatctactag gtcaaattgt atcaaaagga ttaatgcaaa
     4561 tgggaagatt agtcaaaata ttcatccagt tgccagacaa gcccggagca ttaaagggtg
     4621 ttgttgataa gatagcagaa ctgagtgtaa atatagttca agttgagcat gatcgcctca
     4681 gctcaaatgt agctgcagga tcagctggtg tatatcttag tttagaactt gaagatgaaa
     4741 ggcattcaaa gagactctta gattttctga aaaaggaaaa aatggtgttt aaagttgtac
     4801 cttaactgca gtagcagtat tctctaaatc cagctttatc tgctgtagag ccaccaattt
     4861 ttaccaagac aaattcgttt ttggctcttg cgtaagaatc attcagattt cgctgatttt
     4921 cgcgtagaat ttgatactcc tccatagata acttcttgcg tgacccaatc tcctcttcaa
     4981 gattcatact ctttactatc tctttgtaac ttggttgaat aactccactg aataccatgg
     5041 cactgctacc acttccatag gatccaaacc ctaccctgaa accttcaata tcattattct
     5101 tcttaaattc gtactcaagt agacttctaa gtcccatata cattgaggct gtgtacaagt
     5161 ttccaatcat gttagatgct tcaagagaac ttgccatctt tttctcatat acctcattgt
     5221 agaacgaggt ttgcatgaat gattttctga attgttcatc ggccctcatg aattccttgt
     5281 cagccagaat tgattctatt gtacctctac tatcattagg gacaggttca tcaaagccta
     5341 tctccttgat gacatgttgc catcgaggaa gggttctcca ttcatgtctt agcaaataag
     5401 cgagtgcctt ttcacccatt cttctatatg gtaaatgcac cgtaaaaaga tcaatataat
     5461 cagttataga ttctccatcc ttaagatgaa tcaatcccgt tctcattgct ttttccttgt
     5521 agctgtcaaa tgccttcctt acttggatta aatataatag attagagtac aatccattta
     5581 cgagcggagt ttcctttcca aaaggtctgt agaaatcata ttcattctta atgattgttg
     5641 acgtgacttt aggatccaat actagcaatc tcgggtcttc ttttatcaaa agtgcaaccg
     5701 ctccagcacc ctgagtgtat tctcctgcag atccgacatc gtatttcgct atatcactta
     5761 ccactacgat tgccgctttt tcattatttt catcagccct aatccaattc gtattatcgt
     5821 aaattgcata agaaccacta acacaagcaa atttacattc aattccacct gcatgttcaa
     5881 aagaactatc gccgtacacc tgttcaagca tacccacaac aaatgagttt agtgcctttg
     5941 attcatcaat acttgattca gttgctacgt acaatctgcc gatatcatct ggatgcaagt
     6001 tgtttttctt cattaattct agacatgcat ttgatgccat gcatgctgaa tcctgatttg
     6061 tatcaaccag agccatcttt ttgatcccaa taccatgttc tagcttttgg ggatcgatac
     6121 ctcttgcttg agcaaagtcc ttataatcaa tgtacagttt tggaacgtat atagcaaggt
     6181 cgtcaatgcc agctggcatg ttgacaattt ttctcataat agacatttaa aggtacttgt
     6241 tgctattcga ctccaattag aagaaattcg agaaaaaatt gctgtttttt taagaaaatt
     6301 gtcttattta ttggatgtaa ttagaatggt tgtaaagtta taatgctaat tttctctatg
     6361 atgaaggaat taccgaatta gtctgttctt gggggattaa aaacaatgtt tccataaagt
     6421 tgactaatga acacgaatag tttcataaaa gttatttcgc tcatgggcat caaaaccaat
     6481 ttgctttatc gccgcaataa ttttgtccgc tgttaattca gtagatcttg cacccgtagc
     6541 acttactact tcttcgccaa ttaatgtccc accaaaatca tcggcaccat aagttaaagc
     6601 aagttgtgcc atccctatgc cgtttgtaag ccaagaagat tgaagatgat caataaggcc
     6661 agagtaaaca attctggaga ttgcaatcat ttttaataac tccaaaccac ctgagggata
     6721 ttttatcatt ccatcttcct gcatcttagt attgttgggt tcaaagctcc atggaatgaa
     6781 tgacatgaat ccgtgagtct tttcctgtaa ttcagcaatt tttatcaaat gtcttgcacg
     6841 ttgttcataa tcttcacccg tcccatacat catagtggcc gaagatttta ttccaagttc
     6901 atgtgcttgt ctcatgatat ttagccattc ttcacttttt attttcagtg gactaattct
     6961 agactttaca tcatcgtcaa gaatttcagc tcctgcacct ggtaacgaat ccaatccaga
     7021 atccttcaac cttgaaagta cttctctggt cgtgcttctt tctaccttag atatggtatc
     7081 aatttcggag gcagaaagtc catgaatggc aacatctgga catttatcct taattgtcct
     7141 gaatgcttgt tcataatact ctaactttag ttctggattg tggcc
//
LOCUS       DASPFX010000115         3009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1446507, whole genome shotgun sequence.
ACCESSION   DASPFX010000115 DASPFX010000000
VERSION     DASPFX010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1446507"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VD694_02520"
     CDS             <1..696
                     /locus_tag="VD694_02520"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HXW11608.1"
                     /translation="QFINVAAHELRTPIQPILNAIYLMQSSDLSTSKKNQYIDIIKRN
                     TEKLGRLAEDILDVTRIESNSLRLMMERLNLYDLILNIVEEYKRNIQFIYKDLVVNYE
                     SPSKTIFVKGDRLRLNQVLLNLLDNAGKFTKKGSIIVTTVIMSNQVQVTVKDSGVGIH
                     PEIFPKLFSKFVTRSDRGTGLGLFISRSIIEAHGGKIWAENDSQKEGGAAFNFTLPLL
                     DQENGEHQEEHDE"
     gene            665..1768
                     /locus_tag="VD694_02525"
     CDS             665..1768
                     /locus_tag="VD694_02525"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HXW11609.1"
                     /translation="MENIKRNMMNKMTRIEYLLSHRRLFCTTTVLFGWIVIVICICYY
                     LQDGYAQKQNQSSQTLDHKSLRVAYLTDGLFSDAGWGAFAYNAGQEIISKYGYEVTFL
                     DNVSISNIETTLKEYADRNYDIIIAQGYEWGDPVIQVAKKYPDIKFIVFTGLVKSENV
                     VSIFPKQQEATYLLGALAGMLSKNHIIGFIGGDEKYPNLKRIYEGYKQGAMDVNSTNK
                     VLVTYLGDWDNETKGKLAALSQIEQGADFILHVADTAGQGVINAAKEKGIYAFGAVSD
                     QNKLAPETVVTSFVLDPVKAYDYVFKMIRMNNFTGMIYTPGIESTKNTTSEDGIIYIA
                     PFHGFQNKIPKNIQDKFLQLSQDIRNKKIIVSE"
     gene            complement(1803..>3009)
                     /gene="glnA"
                     /locus_tag="VD694_02530"
     CDS             complement(1803..>3009)
                     /gene="glnA"
                     /locus_tag="VD694_02530"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HXW11610.1"
                     /translation="IPWIEKYPTARLICDIQSGGEKRAPYLADPRGIAKNAEKYVKEN
                     GYDMSYWGPEVEFFVFDKLQVNTLTSFHSQSYEITSREAPWSTENVGYTLRLREGYLP
                     SPPGDTLMDYRHECVDVLSSNFGIICDAHHHEVATAGQCEIDIRYDSLVNTADSVQSY
                     KYIVKNIAKKHNMIATMMPKPIALDNGSGMHVNVSLWNKGKNLFYDPNDKYAELSQTA
                     RYFIGGILDHAKALAAIVAPTTNSYRRLIPGYEAPVYIAWSTGNRSAIIRIPAHYKGE
                     KFAYLKRIEFRAPDPSCNPYLAFSAIVAAGLSGIKKRIEANDPKIEDHVDADIFKMTD
                     ADREKHKIKQLPASLRESIEELKSDSDFLRPIFGKHVIERIIDDAAKQHMELAVRPHP
                     HEFTMYADV"
BASE COUNT          958 a          538 c          589 g          924 t
ORIGIN      
        1 caattcatta atgttgcagc tcatgaactt cgaaccccca ttcagcctat cctcaatgct
       61 atttatctta tgcaatcttc agatttgagc acatcaaaga aaaatcagta tattgatatc
      121 ataaagagaa acacagagaa attaggaagg cttgcggagg atatacttga cgttaccaga
      181 atagaaagta attctttaag attgatgatg gaacgactaa atttgtatga tctaatatta
      241 aatattgttg aagaatacaa gagaaatatt cagtttattt acaaagatct tgtggtaaat
      301 tatgagagtc caagtaaaac aatttttgtg aaaggagaca gattgagact aaatcaggtg
      361 ctactcaacc ttcttgacaa tgcgggaaaa tttactaaaa aaggatcaat tatagttaca
      421 actgtaatca tgtcaaacca agttcaagtt actgtaaaag attctggagt tggaattcat
      481 cctgaaatat tccccaagtt attttccaag tttgtgacaa gatccgacag gggaactggt
      541 ctgggcttgt ttatttcaag aagcattatc gaagcacatg gtggaaaaat atgggcagaa
      601 aatgattctc aaaaagaagg aggggctgcc tttaacttta cactcccact tttagatcag
      661 gaaaatggag aacatcaaga ggaacatgat gaataagatg actagaattg aatatttgct
      721 gtctcataga agattatttt gtactacaac tgttttgttt ggttggattg taatagtaat
      781 ctgtatttgt tattatcttc aagacggata tgcacaaaag cagaatcaat caagtcaaac
      841 tttagatcat aaatctctta gagttgctta tttgactgat ggtcttttta gcgatgcggg
      901 ttggggagca tttgcataca acgccggaca agaaataatt tccaaatatg gttatgaagt
      961 tacattctta gataacgtat caatatcaaa tatagaaaca actttgaagg agtatgcaga
     1021 caggaattac gatattatca tagcgcaggg atatgagtgg ggggatcccg ttatacaggt
     1081 cgcaaagaaa tatcctgata taaaatttat tgttttcacg ggattagtaa aatctgaaaa
     1141 tgtagtatca atattcccaa aacaacagga agctacatat cttctgggtg cactagcagg
     1201 catgctttca aaaaaccata tcattggatt tatcggagga gatgagaaat atcccaacct
     1261 aaagaggata tatgaaggtt acaaacaggg agctatggat gtgaattcta cgaataaggt
     1321 acttgtgaca tacctcggag attgggacaa cgaaacaaaa ggaaagttag ctgcgctatc
     1381 ccagattgaa caaggtgcgg attttattct acatgttgct gatactgccg gccaaggtgt
     1441 tatcaatgca gctaaagaga aagggatcta tgcatttggt gccgtgtcag atcagaataa
     1501 attggcacct gaaacggtag tgacgtcatt tgtcttggat cctgtaaagg catatgacta
     1561 tgtgtttaag atgatacgta tgaacaactt tacaggaatg atttataccc ctggaataga
     1621 atcgacaaaa aatacaacta gcgaagatgg aataatatac atagctcctt ttcacggttt
     1681 tcaaaacaag atacccaaga acattcaaga taaattcctt cagttgagtc aggatatcag
     1741 gaacaaaaaa attattgttt cagaatgact ttctgattgt gtaatacaat actgcctcta
     1801 catcatacgt cagcgtacat tgtaaattca tgagggtgag gacgtacagc cagttccata
     1861 tgttgttttg ccgcatcatc aattatgcgt tcaataacat gtttaccaaa tattggtctc
     1921 aagaaatcag agtcagattt taactcttca attgattctc tcaaactagc cggcaactgt
     1981 ttgattttat gtttttctct atcagcatca gtcatcttga atatatctgc atcaacatga
     2041 tcttctatct tgggatcatt tgcttcaatt ctctttttaa ttccgctaag gccagctgca
     2101 acaatcgcag aaaaggccaa atatggatta catgaaggat ctggtgctct aaattctatt
     2161 cttttgagat atgcaaattt ttcaccctta taatgtgcag ggattcttat tattgccgac
     2221 ctgttacccg tactccaggc aatataaact ggggcttcgt aacctggtat caaccttcga
     2281 taagaatttg tagttggtgc tacaattgct gcaagtgcct ttgcgtgatc aagtattcca
     2341 ccaatgaaat atcttgcagt ctgtgataac tccgcatatt tgtcatttgg atcatagaag
     2401 agatttttac ctttattcca gagactaacg ttaacatgca tgcccgagcc attatccaac
     2461 gcaattggct tgggcatcat tgttgctatc atattatgct tttttgcaat attcttgaca
     2521 atgtacttgt aactttggac agaatcagca gtgttgacta gactatcgta acggatgtct
     2581 atttcacatt gtccagcagt tgcaacctca tgatgatggg catcgcaaat tattccgaaa
     2641 tttgaactga ggacatctac gcactcatgt cggtagtcca tgagagtatc tcctggtgga
     2701 cttggaagat atccctctct caacctgaga gtatatccaa cgttttctgt tgaccaaggt
     2761 gcttcacggg aagttatttc atagctttga ctatgaaatg aggtcaacgt gttaacttgc
     2821 aatttatcaa agacaaaaaa ttcgacttcc ggtccccagt atgacatatc atagccattt
     2881 tccttgacgt acttttctgc gtttttggct atcccacgtg gatcggccaa gtagggagct
     2941 ctcttttcac ctccagattg aatgtcgcat atcaacctgg ctgtcgggta cttttctatc
     3001 catggaata
//
LOCUS       DASPFX010000116         2342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_176949, whole genome shotgun sequence.
ACCESSION   DASPFX010000116 DASPFX010000000
VERSION     DASPFX010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176949"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VD694_02535"
     CDS             complement(<1..319)
                     /locus_tag="VD694_02535"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW11611.1"
                     /translation="MNAKDLMSPQVVVARENTNAEQISTRLLAGEFNGVPVVGDNGSV
                     VGIVTALDILKAIQGGNKKLNTMVARDIMTPDPSVVKQDASVDEVISIMVQKEIELVP
                     VIED"
     gene            590..835
                     /locus_tag="VD694_02540"
     CDS             590..835
                     /locus_tag="VD694_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11612.1"
                     /translation="MDATLKKIIKRQLPFLIGGTITGVIMTYYYGFLFSIIVNSAIWM
                     LISFIVNKYYYKSTGFKDERYLLQYGLAMINSRTKRA"
     gene            939..1499
                     /locus_tag="VD694_02545"
     CDS             939..1499
                     /locus_tag="VD694_02545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11613.1"
                     /translation="MKSKKGVLSTKHSLLRHTLFGAISGFVAGIIMTPFLMLIGVIMG
                     IDPNTISIARGMAFGFNNDNNNALIVGLVMHLLTSTVIGIIFAILVTKVIRFEVTGYK
                     KGLIEGIILGITVFAILYIPTTLVMIQPQLHILISQNNPALSQTQTQILGENMLVTGL
                     GLLAHIVYGVVLGSMTTFFLRRRGSS"
     gene            complement(1501..>2342)
                     /locus_tag="VD694_02550"
     CDS             complement(1501..>2342)
                     /locus_tag="VD694_02550"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HXW11614.1"
                     /translation="TQTVNSMNDKQNNNKKIVILNFDDGYKSHFLNAKPILDKYGFKA
                     SFYIVCNFVGKSAVEMNSEDILDFEGKGKEQMNWQDIIELQRQGHDIGSHSMNHYRLN
                     EISEEQMQFEIGQSKQCLLNHGINSTVFAYPFSEGWDDEEIVSTVSKYYFLARAGNVP
                     LMFLRCSGNGNNFDLDGEQSDCRTYDDDGDLTFVNRYSIRTWSHDAVKIDNFYDDSEM
                     LEKFIEVVNSQTTYNKNGKINAIPIVKYHKIDNSGEDWSDSIDRHTIVCKKEKPWSLS
                     QSR"
BASE COUNT          715 a          444 c          392 g          791 t
ORIGIN      
        1 cgtcttctat gactggaact aattcaattt ccttttgaac cataatacta attacttcgt
       61 ctactgatgc atcttgttta actactgatg gatctggagt cataatatct ctagctacca
      121 tcgtattgag ctttttatta cctccttgaa tggcttttaa gatatcaagc gcagtaacta
      181 taccaacaac agaaccattg tcgcccacaa caggcactcc attgaactct cctgcgagta
      241 gtcttgtgct aatctgttca gcgtttgtat tttcccttgc tacaactacc tgtggagaca
      301 ttaaatcttt agcattcatt tcataatcac tatgatctag atgcgctaca atgcttatta
      361 tgatttggaa ttaaaagtta tttttattgc tgtatgcatg gtatattacg actatggatt
      421 taagaatgta taaccagtca taggaagtga gtatcatgga gttggccagc aatgcgtttg
      481 ataatccaaa ctttttcggg gcattttatt agtttggctg tgataacccc aattcttcta
      541 tcttcttcat aagcaaagta gtgcaataag taatgtagaa gagataaact tggatgcaac
      601 acttaaaaaa atcattaaac gacaactccc gtttcttata ggcggtacaa ttactggcgt
      661 aataatgaca tattactatg gttttctatt ttcgattatt gtaaactctg caatttggat
      721 gttgatttcc tttattgtca ataaatacta ctataaatct acaggtttta aagacgagag
      781 atacctttta caatatggat tggcaatgat aaattctaga acaaaaaggg cttgacagga
      841 cagggcggaa atggcattat gtgctgcagc tttaacgtta gtcagaagat aaacattgta
      901 aaatctagtg ccgcaaatag ataaaatagg tagtacatat gaaatcaaaa aaaggcgtac
      961 tctcaacaaa gcattctctt cttagacaca ctttatttgg agcaatatca ggatttgtcg
     1021 ctggcatcat aatgactcca tttcttatgt taatcggagt cataatgggt atagatccga
     1081 acactatctc aatagcaaga ggcatggcat ttggctttaa caatgacaac aataatgctc
     1141 tgatagttgg ccttgtaatg catctgttaa caagcactgt tattggcatc atatttgcca
     1201 tattggttac aaaagttatt cgatttgaag ttactggata caaaaaggga ttgatagaag
     1261 gaatcatatt aggaattacg gtatttgcaa ttctgtatat tccaacgacc ctggtcatga
     1321 tacagccgca actccatata ttaatctcac agaataatcc agctttatct cagacgcaga
     1381 cacaaatact tggcgaaaat atgctggtaa cgggtctagg tcttttggct cacattgtat
     1441 atggtgtggt attggggagc atgacaacat tttttttaag aagaaggggc tcatcttaag
     1501 tcacctactc tgagataacg accatggctt ctctttttta caaacaatag tgtgtcgatc
     1561 gatagagtct gaccaatcct ctccgctatt atctatttta tgatatttga ctatgggaat
     1621 tgcatttatt tttccatttt tattatatgt ggtttggctg tttacaactt cgatgaactt
     1681 ttctaacatt tcagaatcat cataaaaatt gtctattttg acagcatcat gactccaagt
     1741 tctaatggaa tatctattta caaaagtcaa atcgccatcg tcgtcatacg ttctgcagtc
     1801 actttgttct ccatcaagat caaagttatt accattccca ctacaacgca gaaacataag
     1861 tggcacattt cctgctctag ccagaaagta atattttgaa acagtgctaa caatctcttc
     1921 atcatcccat ccttcactaa aagggtatgc aaacacagtg gagttaatac catggtttaa
     1981 gagacactgc tttgattggc caatttcaaa ttgcatttgc tcttcagaaa tttcatttaa
     2041 ccgatagtgg ttcatgctat gtgaaccaat atcatgcccc tgcctttgca attcgataat
     2101 atcttgccaa ttcatctgtt cttttccctt tccctcaaaa tccaatatat cctcagaatt
     2161 catttctact gcactctttc caacaaagtt acagacgata tagaagctag ccttgaatcc
     2221 atatttatcc aagatgggtt tagcatttaa gaaatgactt ttgtatccat catcaaagtt
     2281 taatatgact attttcttgt tgttattctg tttatcattc atagaattca ctgtctgagt
     2341 gt
//
LOCUS       DASPFX010000117         5262 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1580721, whole genome shotgun sequence.
ACCESSION   DASPFX010000117 DASPFX010000000
VERSION     DASPFX010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5262
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580721"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..342
                     /locus_tag="VD694_02555"
     CDS             190..342
                     /locus_tag="VD694_02555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11615.1"
                     /translation="MDASREGQVDKPMSQSAIWPVANPKQPLLFTFLIFQNVDAKIGS
                     WNGDQR"
     gene            complement(515..931)
                     /locus_tag="VD694_02560"
     CDS             complement(515..931)
                     /locus_tag="VD694_02560"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11616.1"
                     /translation="MSIGKLVSIVDDEEDITTLFHDALKRIDGITLFTFTDPILALEH
                     FQKNHEAYVLVISDFRMPGLNGTELLRKMKDTNKHIRTILMTAFEMEDSILGDYAKRE
                     IINSFFQKPVRLTDLIDVVYSELHTHEIQKTIPTQR"
     gene            complement(1367..1795)
                     /locus_tag="VD694_02565"
     CDS             complement(1367..1795)
                     /locus_tag="VD694_02565"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11617.1"
                     /translation="MSNNQRIVSIVDDETDITDLFQDALSTYIDGISVVSFNDPTLAL
                     EHYTQNKQDYTLIISDMRIPLMTGLELLKKVKELNPNVRTMLVSALDMPDDPEFQKYL
                     KDGVIDSFLEKPITINRLCEKVRNEVEAYDFCSKSPRLQI"
     gene            2393..2743
                     /locus_tag="VD694_02570"
     CDS             2393..2743
                     /locus_tag="VD694_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11618.1"
                     /translation="MFKQFIMIGATILMMTLLSTNNLNAQNVSTNASYAAGSLMDSVN
                     QTTSELGENASLVLNKAGEEVGSTLNQLGKNMSDISSEILNDTEETAKKVGIGAADVL
                     SNISGEIKEGISGK"
     gene            2824..4212
                     /locus_tag="VD694_02575"
     CDS             2824..4212
                     /locus_tag="VD694_02575"
                     /EC_number="2.8.4.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR01578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase"
                     /protein_id="HXW11619.1"
                     /translation="MEKVKHLSTFSNDLNPKLPFQNFSSSKKKVWVEAFGCSANIADS
                     EIIKGILSNNGYELTQIRKNSDINVLVTCAVKEATEHRMISKIRRYSREKPLVVAGCL
                     PKTSKKLIESCSPSSSLMGPQSLDKTLQVVGASLNGQKIVALEDSMSTKVNLPRLRLN
                     PVVSIIEISSGCLSDCSFCQTKLAKGTLRSYRIGEIVRQMEDDVASNCKEIWLTSTDN
                     GCYGMDLKTNLVDLLENCSNIEGDYKIRVGMMNPMYVPRFLDRLISLYLNNDRIFKFL
                     HMPVQSGSERILRKMKRGHTARIFLDVVKELRKKIPEITIATDIITGFPTESEKDFQE
                     TLRLIEESQPDVINSSKYSPRPGTVASKYPKINTTIVKERSTRLHETIKKTSMSRNQI
                     WHGWKGEILIDEVLENGKMQGRNYAYRPVIVDLQGNQKFDPKRLLGHYLSVKVVKVSN
                     YSLLGELISEFP"
     gene            4306..5262
                     /locus_tag="VD694_02580"
     CDS             4306..5262
                     /locus_tag="VD694_02580"
                     /inference="COORDINATES: protein motif:HMM:NF012320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11620.1"
                     /translation="MSEDCIELRKPVLLIGIGKIGKDIVSKLHNVEFDALLISNHKEE
                     LENNSLHIDCKSWINPSSYKIRSFLETYKEEIGSKLSGYQTIVLVTSLSEKSGIAIAP
                     VISHIAKSMPDKTVISLVTMPFGHEKDRLFQAGVSLKRISLNCDINFVVDNDAYVEIN
                     PSLTIEDCSKISNEILLNTIKLIPEISLNFGTNLVSGTLNENNIEIGMKDLIAQLYTS
                     LGTSTITKSILYVNGARSEPIGRLNEMLSNFQNTMEGDTSDVSFVVTDSSRNNMHLIA
                     SIKGRTKFDSYDPLNMIPDDKVLDWDIPESHPSIDLPLPLID"
BASE COUNT         1825 a          885 c          933 g         1619 t
ORIGIN      
        1 attaatgtcc aaatacttcg aagaatttcg aaaaattatg gaaaaaattc tacacaatct
       61 tccacaatga tcagaatcca aagattgcaa ataaaataga atttgttacc ataatacaat
      121 aaatcctaaa atgcgcgatc atggttcaaa cctattagtg ggacccctca cttcaactat
      181 cctgtcaaaa tggatgcatc tagggaagga caagtggata aaccaatgtc acaatcagct
      241 atctggccag ttgcaaatcc aaaacaacca ctattattca cattcttgat attccagaat
      301 gtcgatgcaa aaatcggtag ctggaatgga gaccagcgct gaaaaatagc cgctaaatag
      361 aataaagcca aagagggctt gaaactcccc attttctttc aatatatatt aataaaattt
      421 ctttgaagaa gtgggaactc ttagaatctg ttccacatag ttcaaatgat cttcatacag
      481 aatattaatt tcggtcaagt catgagatca aagtttaccg ttgagtaggt attgtcttct
      541 gaatttcatg agtatgtaac tccgaataga ctacgtcgat aaggtcagtt aatcttactg
      601 gcttctggaa aaatgagttg ataatttccc ttttggcgta atcaccaagt atagaatctt
      661 ccatttcaaa ggcagtcatc aatattgttc taatatgctt attcgtatcc ttcattttcc
      721 tcaacaattc cgtgccattt aatcctggca ttctaaagtc ggatattact aacacataag
      781 cctcatggtt cttctgaaaa tgttcaagcg ctaatatagg atctgtaaaa gtgaataagg
      841 ttataccatc tatgcgcttt aatgcgtcat gaaaaagtgt cgtaatgtcc tcctcatcgt
      901 ctactattga aactaattta ccgattgaca ctcgaacgtc tcatcttgct accactccgt
      961 gatttccagt ctttatcatc tattgtatga cgcgccgttc ttattaacac tatgtttgag
     1021 agatactatt gtttactatt actagttcat ttaatcataa aaccaaatta tcaaatatat
     1081 tgcatttata attattttta tccaggaata tggttttatt catatttggt cactgttaac
     1141 agagaaactt aacaactgat gggatagaac tgtaggtcag atcccatcaa ttcctactgt
     1201 ggtaattgta gtaacattag attaggatac aaagaataat aacacgcact ggtatggata
     1261 atggaaaatt tgaagcccca caaataaaat gatctatgtg cattacgtaa ggttacctac
     1321 tcataagaaa catagtacaa aaatagtttc acgtcagata atttttctat atttgaagcc
     1381 ttggactttt tgagcaaaaa tcgtaagcct caacctcatt tctcactttt tcacataatc
     1441 tattaatagt tataggcttt tcaaggaatg agtctataac tccatctttc aaatattttt
     1501 gaaattctgg atcatccggc atatctaatg cgcttactaa catcgttctt acattaggat
     1561 taagttcttt gaccttttta agtaattcca atcctgtcat aagaggtatt ctcatatcag
     1621 aaatgatcaa tgtataatct tgtttatttt gggtgtaatg ctccaatgct agtgtggggt
     1681 cgttaaaact tacaacagaa ataccatcaa tataggtaga taaggcatct tggaaaagat
     1741 cagttatatc tgtctcgtca tcaacaatgc taacaattct ttggttgttt gacattgcga
     1801 atttgtgaaa tgttcataca aacatgtttt ttataaactt tacaacatac atctctaaat
     1861 atgaacatca gttataattt agtacagaat tttgcataaa aatgaaccct ttcatgaagc
     1921 atctgtcata tcctatatcc tcttcagtgt gttcaagtat aatctaaaaa gagtaaaatt
     1981 ccataaatag aaaaaaatca tccgatcccg aatcttagag atccgagcca tactgtagga
     2041 atgttgttct aaatctccga caaggacata aatcgttgtg gcatctagaa ccgtctggat
     2101 tatgtacatc tttcctattc cctcaattta gggagatgtc atgcagtctc attatttagg
     2161 tgcgccaact tgatttataa aagttaaaac ctggtgggag gttgttttac cgaattatgc
     2221 agcagataaa ccaattctcc catcagattg ataaggaacg taatattttg aaacgacaga
     2281 taataaataa ttaacctttg taaatgttgg taaaatttaa aatggataaa tgtcaattat
     2341 taataaaatt tacgactttt tatgtttaag tataatattg ataacttaac ttatgtttaa
     2401 acaatttatc atgattggag ctacaatttt gatgatgacg ttgttatcaa caaacaactt
     2461 gaatgctcaa aatgtatcta caaatgcctc atacgctgct ggtagtttga tggactcagt
     2521 taaccaaacc acttctgaat taggagaaaa tgcttctttg gttctgaata aggctgggga
     2581 ggaagtaggt tctacactaa atcagcttgg gaaaaatatg agtgatatca gttcagaaat
     2641 actaaacgat acagaagaga ccgctaagaa agtagggata ggagcagccg atgtgctaag
     2701 caatattagc ggtgaaataa aagaaggaat aagcggtaag taggaagtgg ggcttgccta
     2761 taaaattgtg gaaatttatt gactatttaa atagataata aattccataa taatggatta
     2821 cgtttggaaa aagtaaagca tctatcaact ttttcaaatg accttaatcc taaacttcct
     2881 tttcagaatt tcagttcttc caaaaaaaaa gtatgggtag aagcattcgg atgttcggca
     2941 aacattgcag attccgaaat aatcaaaggt atactttcca ataacggata cgagctgact
     3001 caaattagaa aaaattcaga catcaacgtc cttgtaactt gcgctgtaaa ggaggccact
     3061 gaacacagaa tgatttcaaa aataagaaga tattcaagag aaaagccact cgttgttgcc
     3121 ggatgtctcc caaagacaag caaaaaattg atcgaatcat gctctcctag ctcatcactc
     3181 atgggtccgc aatctttgga caaaacgttg caagtggttg gtgcttcgct gaacggtcaa
     3241 aagattgtgg cgttagaaga ttccatgtcg acaaaggtaa atcttccgag actaagatta
     3301 aatcctgtag tcagtataat tgaaatctca agtggatgcc taagcgactg tagtttttgt
     3361 caaacgaaat tagccaaagg aactcttagg agctatagaa tcggggaaat cgtaaggcaa
     3421 atggaagatg acgtggcatc aaattgcaaa gaaatctggc taacttccac tgataatggt
     3481 tgctatggaa tggatttgaa gaccaatcta gttgatctct tggaaaattg ttccaatatt
     3541 gagggagatt ataagattcg cgtgggaatg atgaatccaa tgtacgttcc taggtttttg
     3601 gacagattaa tttcacttta cctcaataac gatagaatct ttaagtttct acacatgccg
     3661 gtgcaaagtg gaagtgagag aatactacga aagatgaaga gagggcatac agcaaggatt
     3721 tttcttgatg tggtgaaaga attgagaaaa aaaatacccg agataacaat tgctacagat
     3781 ataatcactg gatttccaac agaatctgaa aaagattttc aagagaccct acgtctaatt
     3841 gaggaaagtc agcctgacgt gattaattct tctaaatata gtcctcggcc cggaacagtc
     3901 gcttccaaat acccaaaaat caatactaca attgtcaaag aacggagtac tagattacat
     3961 gaaacaatca agaaaacctc aatgagtaga aatcaaatat ggcatggttg gaagggcgag
     4021 atcttgatag acgaagtttt ggaaaatggc aagatgcagg gtagaaatta tgcgtacaga
     4081 cctgtaatag tggatttgca aggaaatcaa aaatttgatc caaaacgatt acttggacat
     4141 tatctatcag taaaagtcgt aaaagtttca aattattcct tattagggga attaatttct
     4201 gaatttccat aatcttatca acttttttgt accaattatg atgcttgatt taatctacta
     4261 aatttttatt ctaatactca atcttctgat taggagttgg attgattgtc agaggattgt
     4321 attgagttaa gaaagcctgt attgttaatt ggaataggta aaattggaaa ggatattgtg
     4381 tcaaaattac acaatgtgga gtttgatgcc ctgttgatta gtaaccacaa ggaggaacta
     4441 gagaataatt cacttcatat tgattgtaaa tcatggatta atccttcgag ttataaaatc
     4501 cggtcttttc tagaaacgta caaagaagag attggctcaa aattatctgg atatcaaact
     4561 attgttcttg taactagttt atctgaaaaa tcaggcattg caattgcacc tgtaatctca
     4621 catatcgcaa aaagtatgcc tgacaagact gtaatttcac ttgttaccat gcccttcggc
     4681 catgaaaagg atagactgtt tcaagctggc gtatcattaa aaagaatttc tttaaactgt
     4741 gacattaact ttgttgttga taacgatgcc tatgttgaaa taaatcctag tcttacaata
     4801 gaagattgtt caaaaatatc aaacgaaata ctactcaata caatcaaatt gattccagag
     4861 atatctttga attttggaac aaatctcgta tctggaactt tgaatgagaa caatattgag
     4921 ataggtatga aagatttaat agcccaactc tatacctcat tgggaacatc caccataacg
     4981 aaatccattt tgtacgtaaa tggtgcaaga agcgaaccaa ttggtagact aaatgaaatg
     5041 ttgagtaatt ttcaaaatac catggaagga gatacaagtg atgtttcgtt cgtggtgact
     5101 gattcttcaa gaaataacat gcatctcatt gcatcaatca aaggaagaac caaatttgac
     5161 tcgtacgatc ctctcaatat gatacctgat gacaaagtgt tagactggga cattccagaa
     5221 tcgcacccaa gtattgattt accattacca ttaatcgatt ag
//
LOCUS       DASPFX010000118         2486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1642450, whole genome shotgun sequence.
ACCESSION   DASPFX010000118 DASPFX010000000
VERSION     DASPFX010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1642450"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..652
                     /locus_tag="VD694_02585"
     CDS             <1..652
                     /locus_tag="VD694_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HXW11621.1"
                     /translation="EMNDKQAFEIQLTENIQRKSMSALEEAEAFRKYVQDLGWGGITE
                     LAKKIGKSEEYVSHRIQLLKLPQDVKEKIMLNKLSVSQALELTTLCPDNILQFTDHII
                     ENELTIRQIREIKAVFSKEGLSGDELELMAKENINPKNIKTLKVTKKTTLALKITLAR
                     LDNIIEEVQLNFEPEQSTDVISFLMDMRLKIHSLIDDTIRFKNIKITKTAKHERIK"
     gene            complement(701..1180)
                     /locus_tag="VD694_02590"
     CDS             complement(701..1180)
                     /locus_tag="VD694_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HXW11622.1"
                     /translation="MNEIRDFLRNYGHDLSLEEIDSRIKALEDEKIILRYTISIDTKK
                     VRHKIIRVVLVIFRPSQHLRSRVDGLKKYLEDAPFVLFSGRTRGGYDWITIQVFASPE
                     IADEESDIYRNLFGDIIQTYEVYDFSPLKEPTPNAFTYTEKEYKKFLNEWMPQFLGR"
     gene            1648..>2486
                     /locus_tag="VD694_02595"
     CDS             1648..>2486
                     /locus_tag="VD694_02595"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015204 - urea transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071918 - urea transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HXW11623.1"
                     /translation="MGIPTYSSGDPFLDFFYILFNGISEVPLFSSPVTGIFILAGVLL
                     ASRKAGMMMVAAGLIGAATALLLGADYGLVTFGLFGYNSILTGMAFWSGPFVKANRVT
                     LTLSIFGAIITTVAWMAFSHFMGDLFSPDERGGIANSVAIPGFTSSFIFTTWAMMYAS
                     KRYGHDIWPEVPPSPKEDKIPGSDNPVQLKIENFKWTAKEFIIATLKGVSQVTFVENW
                     KTGVFWVVGLTLAFELAPFIAGVQDRPWYTNAYTSQWNEYSPLYLAGVMALIGSAIGA
                     ALS"
BASE COUNT          819 a          433 c          456 g          778 t
ORIGIN      
        1 ggaaatgaat gacaaacagg cgtttgaaat tcaattaact gaaaatatcc agcgaaaatc
       61 aatgagtgca ttagaagaag ctgaggcttt tagaaagtat gtacaggatc tgggctgggg
      121 gggtattacg gaattggcca agaaaatagg aaaaagcgaa gaatacgtct ctcatagaat
      181 acaattacta aagcttcctc aagatgtcaa ggaaaaaatc atgctaaata aattaagcgt
      241 aagtcaagcg cttgaattaa ctactctttg tccagataac attctccaat ttaccgatca
      301 tatcatagaa aatgaattga ctatacgaca aattagagag atcaaggctg tattttctaa
      361 agaggggctt tcaggagatg aactggaatt aatggctaag gaaaatatta atcctaagaa
      421 catcaaaacc ctaaaggtaa ctaaaaaaac aacacttgca ttaaaaataa ctcttgctag
      481 gctagataac ataatcgagg aagttcaatt aaactttgaa ccagaacaaa gtactgatgt
      541 cataagtttt cttatggaca tgagacttaa aattcactct ttaatagacg acacgattcg
      601 attcaaaaat attaaaatta ctaaaacagc aaaacacgaa aggataaaat aattaattaa
      661 ttagaaaagt caaatcaact caaatcaaat aattacttga ttaccttcca aggaactgag
      721 gcatccattc atttaggaat tttttatatt ctttttcagt gtaggtgaat gcattaggag
      781 ttggttcttt taacggagaa aagtcgtata cctcatatgt ctggatgata tcaccaaaca
      841 aatttctata aatatcactt tcctcatctg caatctctgg agaagcaaac acttgaatgg
      901 taatccaatc atatcctccc ctggttcttc ccgaaaatag tacaaaagga gcgtcttcaa
      961 ggtacttctt taatccatct actctgcttc tcaaatgctg agaaggtcta aaaataacta
     1021 aaacaactct gattatcttg tgcctgactt ttttagtatc gatagatatt gtatacctta
     1081 atattatttt ttcatcctca agtgctttaa tacgcgaatc tatttcctct aaactcaaat
     1141 catgaccgta atttcttaaa aaatccctaa tttcattcaa gtcctgtttg gagtctttac
     1201 tcagagcaga aagtattaac tcatctatcg aatctatcat tgatttgata ttacaaagtt
     1261 actgatcaaa ttatttatag tttagaactt taatttcgag gtaattgtat tatgaatttg
     1321 aagatatgga ggaaaaaccc aaatccgccg acgaccatcc gatcattgac ccattagaat
     1381 caagaaagaa tagtcaaagt tggggatccc gcaaacagaa ttatcaaaac tgctaacgat
     1441 cttaacgtag atataatagt tttaggaacg cgtggattag gacatactgc tgatgatgac
     1501 cttggccatg taacaagaaa agttctgtct gaatcacaca agcctgtatt attgctaaat
     1561 tagttcccgt tcattagata ctctgtatat attaataaac tgatatttaa tacaaattgt
     1621 taaactatac ctgtacagaa tccttctatg ggaataccaa catattcgtc gggagatcct
     1681 tttctagatt ttttttatat cttattcaat ggaatctctg aagttccttt gtttagttcg
     1741 cccgtaactg gtatatttat tcttgctggt gtgctgctgg cctcgcgtaa agctggtatg
     1801 atgatggtcg ccgcgggttt aattggagcg gcaacagcgt tactacttgg tgcagattat
     1861 ggtctagtta cgtttggttt gtttggatac aactctatat taaccggaat ggctttttgg
     1921 tctggtccgt ttgtaaaagc aaatcgtgta acgcttactc tttcgatatt cggagcaatt
     1981 attaccactg tggcgtggat ggccttttcg cactttatgg gagatttgtt cagtcccgat
     2041 gaaagaggtg gaatagctaa ttccgtagct attccaggat ttacatcctc gttcattttc
     2101 acaacttggg ctatgatgta tgcaagtaag cgttacggac atgatatttg gccagaagtc
     2161 cctccatctc caaaagagga taaaataccc ggaagtgata atccagtcca attgaaaatt
     2221 gaaaatttca aatggacagc aaaagaattt attattgcaa cattaaaggg tgtctctcag
     2281 gttacctttg ttgaaaattg gaagacagga gtattttggg ttgttggact taccttagct
     2341 tttgagttag caccttttat cgctggtgtt caggataggc catggtatac aaatgcgtat
     2401 acatcacaat ggaatgaata ttcgccatta tatcttgctg gagttatggc acttatagga
     2461 tcagcgatcg gtgctgcatt gtccat
//
LOCUS       DASPFX010000119         3606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_603632, whole genome shotgun sequence.
ACCESSION   DASPFX010000119 DASPFX010000000
VERSION     DASPFX010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603632"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VD694_02600"
     CDS             complement(<1..423)
                     /locus_tag="VD694_02600"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HXW11624.1"
                     /translation="MMMHQVALITGCSSGIGYETALMLARNGYHTFATMRNTKKSNSL
                     LEISEQEKLPLRVIELDVNDGISIEKAVSQVKNEAKRIDILINNAGYGLVGFFEDLSL
                     DEIRDQFETNFFGVLNITKNIIPIMRSQKSGTIINISSG"
     gene            584..2962
                     /locus_tag="VD694_02605"
     CDS             584..2962
                     /locus_tag="VD694_02605"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HXW11625.1"
                     /translation="MSDADEEPRTNSGPTSHNQLVRSLGLLDILMVGIAAMIGGSIFV
                     LTGPAIGLAGSAVITVFIINGIITLFTAMAYSELGSAMPEAGGGYLWVREGLPRPNAF
                     ISGWMAWLAHIIAGSLYAVSFASFLIGLLDMTNISHDLLLFNLIPLDKIIAVLSIAAF
                     TYINFKGTSETGKTGVIVTIIQLGLIFILITAGLWIMNGRPDWQMNFSDFVPMGISGI
                     VAAMGLTFIAFEGYEVIVQTGEEVKNPRRNIPRAIFISLGAVIILYCLIAFVSIGAIF
                     PTGIESWKYIGDGGELGVMKAAELILPYGAFIVLGGGLISTLAALNATTFSSARVAFA
                     MGRNYNMPNQLSAIHRKNKTPHIAILISGIIMAIMAFGLPLAQIAVAAGVIFLLLFTQ
                     VNMAVITIRRIYGDKLEYGFKTPFFPIIPIIGIFLKLGLAIYLLFTQPLSWAITIVWV
                     VIGFFVYRMYTFRKEIEHYAPIVTSEGDLERKDYRILIPYTPEDPDRLLKYAIRVAKE
                     NIGEINILRVITVPKQTPLSAGTGYAETARKSFEPLDKLLDIESIPNHYLVRISHDAN
                     EAILATVEEQKIDLLITDFEAFRNSKKIQTLLTCDVLTILSEGNEEFTFEPSRKSKGR
                     VALKNLVVLYDGGDHSDVVLKATSWLERSGQFKINVLYINTKNDDEQEKIVRITDIIK
                     QKEYLEQIGIEFNEIALSDNDLKYSNEAADTILSSLSNFQPDVLITGASISKFSFFTD
                     PHFLNMLYELKCPVIVARHFAIPGVHTIKTLILRLRIFVVDKLEDLKKSRQK"
     gene            3140..>3606
                     /locus_tag="VD694_02610"
     CDS             3140..>3606
                     /locus_tag="VD694_02610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11626.1"
                     /translation="MKIFYTLDRKKTLLSVWMLYLIPSLLLNPIYGQTTQPSSTDSIL
                     MALNVQRILEQMNLVQASLTKGDNTRAFEHAYISHSITLPSIKDKLKEIDQDSTARLE
                     SLLIDLPILVKSSSQSPEIESKLTEITSILNKFNSQLLDPNNANYYSVVASTI"
BASE COUNT         1125 a          652 c          676 g         1153 t
ORIGIN      
        1 acccgaactg atattgataa ttgtaccgct tttctgcgat cgcatgatag gaatgatgtt
       61 cttagtaata ttgagaacac caaagaaatt agtttcaaat tgatctctta tctcatctag
      121 gctaagatcc tcaaagaagc ccacaagccc atagcctgcg ttatttatca aaatgtcaat
      181 tctctttgcc tcatttttaa cctgactaac tgccttttct atagatatcc cgtcatttac
      241 atcaagttcg atgactctta atggaagttt ttcttgttcg cttatctcta aaagggaatt
      301 tgattttttt gtatttcgca tagttgcaaa tgtgtgatac ccatttctgg cgagcattaa
      361 tgcagtttca tagccaatac cgctcgaaca accagtaatt agtgcaactt gatgcatcat
      421 cataatacac tttatttttc atatatattt aattgccaaa tttcaagcgt ttttcttatt
      481 ctcaacacac gagctgccat ctttaacaga aagtctcttt atcgaaagta agggccgatt
      541 aaaaacatta atttatcatt agaatcgaat cgatagcaag caattgtccg acgctgatga
      601 agaaccgcgt acaaactctg gccctacatc tcataaccaa ttggttaggt cgctggggct
      661 cttggatata ctcatggttg gaattgctgc catgataggc ggttcaatct ttgttctaac
      721 cggaccagca atagggctag caggcagtgc tgttattact gtttttatta tcaatgggat
      781 aatcacatta ttcacagcaa tggcatattc agaacttgga tctgcgatgc ctgaagcagg
      841 tggtggatat ttatgggtta gagaaggatt acctcgaccc aatgctttca taagtggatg
      901 gatggcttgg ttggcccata tcatagcggg gtcattgtat gctgtaagtt ttgcctcatt
      961 tctcatagga ttgctagata tgactaatat ttcacacgat cttttactgt tcaacctgat
     1021 ccccctggat aagataatag ctgtattatc tattgctgct tttacctata tcaacttcaa
     1081 gggaacttct gaaactggca agaccggagt catcgtaacg ataattcagt tgggattaat
     1141 tttcatcctg atcacggctg gcttgtggat catgaatggg cgtcctgact ggcagatgaa
     1201 cttttcagac tttgtaccta tggggatttc gggaattgtt gccgctatgg gtctaacttt
     1261 catagcattt gaagggtatg aggttatcgt tcaaacaggc gaagaagtta agaatcctag
     1321 aaggaatatt cctcgagcta ttttcatatc gctgggcgca gtcattattt tgtattgctt
     1381 aattgcgttt gtatccatag gtgcaatatt tcccaccggt attgaatcat ggaaatacat
     1441 tggcgatgga ggtgagcttg gagtaatgaa agctgctgaa ttgatacttc cttatggagc
     1501 atttatcgtc ttgggtggtg gcctgatatc taccttggct gcattaaatg caactacatt
     1561 ttcatcagcc agggtagcgt ttgcaatggg gaggaattac aacatgccaa atcaactaag
     1621 tgcgattcac agaaagaata agacgcctca tatagctata ctaatttctg gtatcattat
     1681 ggctattatg gcatttggtc ttccacttgc acagattgcc gtggcagcgg gtgttatttt
     1741 cctattatta ttcacgcaag tcaatatggc cgtaattaca atccgcagga tttatggtga
     1801 caagttagag tatggtttca agacgccttt ctttcccata atacctataa ttggtatctt
     1861 tctaaaactt ggtcttgcta tttatctatt gtttacacaa ccactgagct gggctataac
     1921 tatagtttgg gtagtaattg gattctttgt ttatcgtatg tatacattcc gtaaagaaat
     1981 agagcattat gctcctattg ttaccagtga aggtgatctt gaaagaaaag actataggat
     2041 tcttattcca tatacccctg aagatccgga tagattattg aaatatgcaa taagagttgc
     2101 gaaggaaaat attggtgaga tcaacatatt acgagtaatt actgtaccaa aacagactcc
     2161 actatctgca ggaacaggat acgctgaaac tgcgagaaaa tcgtttgaac cgctcgataa
     2221 acttctagat atcgaaagca tacctaacca ctatcttgta agaatctctc atgatgctaa
     2281 cgaagctata ttggctacag ttgaggaaca aaaaatagat ttattgatta cagattttga
     2341 agcatttaga aacagcaaga aaattcaaac attattgaca tgcgatgtac ttaccatttt
     2401 gtcagaagga aatgaagagt ttacattcga gccaagccgc aaatcaaaag gacgtgttgc
     2461 tctaaaaaat ttggtcgttc tatacgatgg aggagatcat tccgatgttg tactgaaggc
     2521 gaccagttgg ctggaacgtt caggacaatt caaaattaat gttttatata ttaatactaa
     2581 gaatgatgat gaacaggaaa aaatcgtaag gataactgac attataaaac aaaaggaata
     2641 tcttgaacaa attggaattg aatttaacga gatcgcactt tcagataatg accttaaata
     2701 tagtaatgaa gcggcagata caatcttgtc ttcattgagt aattttcaac ctgatgtttt
     2761 aataactggc gccagcatct caaaatttag tttctttact gatcctcatt tcctaaacat
     2821 gttatatgaa ttgaaatgcc cagttattgt ggcaagacat ttcgccattc ccggtgttca
     2881 cacaatcaag accctaattc ttagacttag aatttttgta gttgacaagt tggaagattt
     2941 gaaaaaatcc agacaaaaat aaaacatctc tacaaagtta caaattatcc ctgtggaatt
     3001 aggtcatttg ttatcattaa ttcagttctg atttagcatt atcaagattt atatagaatt
     3061 aatctactta ggtaagccta attgttttat gatactaaga gttattgttc caaagtcctt
     3121 cacatgaggt agaaaatgaa tgaaaatttt ctatacgtta gataggaaaa aaactctgtt
     3181 atccgtatgg atgctttacc ttattccaag tctcctgctc aatccaatat atggacaaac
     3241 tactcaacca agttctactg actcaatttt gatggctctt aatgtacaaa gaattttgga
     3301 acagatgaac ttggttcaag caagtttgac aaagggagat aacactcgag cgtttgaaca
     3361 tgcatatata tcccattcaa taacccttcc ttcaattaag gataaactga aagaaattga
     3421 tcaagattca actgcaagat tagaatcact gcttatagat ttaccaatat tggtaaagtc
     3481 ctcatcacaa tcgccggaaa tagaaagtaa attaactgaa atcactagta ttctaaataa
     3541 gttcaattcg caattattgg atccaaataa tgcgaattat tattccgtcg tggcatcaac
     3601 tatcat
//
LOCUS       DASPFX010000120         4528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_829588, whole genome shotgun sequence.
ACCESSION   DASPFX010000120 DASPFX010000000
VERSION     DASPFX010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_829588"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            491..850
                     /locus_tag="VD694_02615"
     CDS             491..850
                     /locus_tag="VD694_02615"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11627.1"
                     /translation="MLDDDFDIINIIKLALQNHGYNVFGFTDPLSALEHFRINHSTYS
                     LVLSDLRMPVMNGFEFVRQVKKMNPKIKVLLMTAFEINAMEFTRVLPKPKIDGFIQKP
                     ISMRKLNGIIDKYVNPE"
     gene            1016..1651
                     /locus_tag="VD694_02620"
     CDS             1016..1651
                     /locus_tag="VD694_02620"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HXW11628.1"
                     /translation="MTTDRENVFRGHAVQVSEELRNSEMGAHTLLLYPDLSTLRELYS
                     FYARSALGDSEIFLILPYLETVDNVKRILSEDSANIDVRKYEKEQSLLIMDSLKGYFG
                     LQEGLIPFLVQTADFAKKSGKSLSVLSDMGSFFYNDKKDDLLQYELALPSKYEKMNLK
                     GFCAYHQLDFDKRFSEKERQDLIKHHGRTLTLVSSSTVTKGHRKAESATCN"
     gene            2180..3082
                     /locus_tag="VD694_02625"
     CDS             2180..3082
                     /locus_tag="VD694_02625"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HXW11629.1"
                     /translation="MTTHQWPPLTLTEWKDTYETLHMWTQIVGKIRLALCPPVNHWWN
                     ATLYITPRGLSTTTMPYKDRNLQIDFDFIDHLLIIQTDGPTKTIALQPRSVADFYHEV
                     MGTLESLGMPVTIWTTPVEVQDRTPFEKDEKHAAYDPKYAQRIWRIMAEASRVFNQFR
                     SRFVGKVSPVHFFWGAFDLAVTRFSGRTAPPHSGAPNMARFVAVEAYSHEVSSCGFWP
                     GGGPVNEAAFYAYAYPEPQGFKDYPIQPQEAFYHKEMGEFLLPYEVLRNTKSPDDVLL
                     SFLQTTYEAEATCAKWDRQSLERQ"
     gene            3326..3895
                     /locus_tag="VD694_02630"
     CDS             3326..3895
                     /locus_tag="VD694_02630"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HXW11630.1"
                     /translation="MIEGEAENTKLSSPVSEFRDHIQGPATAPVTLVEYGDYECPYCA
                     QAYLITKEIQERLGDKLRLVFRNFPLTKIRPHAYETALAAEAAAAQGKFWDMYDYLFK
                     HGQGVTNDSLRRSAASLGLNLTKFDSDFYNRLYSNHIDEDVQSGNSSGVKGTPTFFIN
                     GELYNGSWDLDSLLGTLDEESVFSWKHKQ"
     gene            3914..4081
                     /locus_tag="VD694_02635"
     CDS             3914..4081
                     /locus_tag="VD694_02635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11631.1"
                     /translation="MIPFEMILDAAETVLGYFGFDRSVYGNKRNIGPRKWRWLQEQRQ
                     ERENDIRTEVI"
     gene            complement(4155..4367)
                     /locus_tag="VD694_02640"
     CDS             complement(4155..4367)
                     /locus_tag="VD694_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11632.1"
                     /translation="MLVAGLCISLLASIFMAYGKVFRRRETIEEQSGSTEIHNQKEKE
                     HRMRETRYAQIGAALLILGFSVQIAP"
BASE COUNT         1434 a          874 c          889 g         1331 t
ORIGIN      
        1 agtacccacg caaatctaat ctcaagtagt agaggataga agcatgtgat aagtctcttg
       61 ggagacaaaa gcataccagg gaaatagtca gcggctttaa cttagcctaa cttgtcccct
      121 ttaggtatct caaataacga aaaataaact aggtcatcag tggaagaaaa agacttactc
      181 caaattaacg ctaccatgat tgccggtgcg ttcatttact gcactagaag tccctgtttg
      241 attccttacg tctctactat tcttaaacta ttttcacttt cttcctcaaa ttttcatttt
      301 catttccatt tctgcaaaac ctactcctat agtctgacca caagtctttt attttgatat
      361 gtggttatac agatgtctaa catgggactg agcgtcttta cttcctctcc tcatcaagat
      421 caagaacaga aaacagttgg gaagaaggta agtagaatcg aaaccgaaaa ttgatactgg
      481 ttctatcttg gtgttagatg atgattttga tattattaat ataatcaagt tggctctaca
      541 gaatcatgga tataatgtct tcggcttcac ggatccgctg tcagcattgg aacattttag
      601 gataaatcat tcaacctatt ctcttgtatt gtctgattta agaatgccag taatgaacgg
      661 atttgaattc gtgagacagg tcaaaaaaat gaatccaaaa attaaggtct tgctcatgac
      721 agcatttgaa atcaatgcga tggaatttac cagagttctt ccaaaaccga agatagatgg
      781 gtttatccaa aagccaatat caatgagaaa attgaatggt attatcgata aatatgtgaa
      841 tccagaataa ttttcattcg catcttttgt taaacaacca ataagatcaa acagtcattt
      901 atcgaacaat ctaatgacga attaacgatt gttccttacc tatattgata ttcatgatcc
      961 atacctgttt ataacgcata gagtgcagac aaagtcgtaa gcaagtgata aagcaatgac
     1021 tactgataga gaaaatgtct ttcgtggtca tgctgtacaa gtctcagagg aattaagaaa
     1081 ttcagaaatg ggggctcaca cccttctatt ataccccgat ctatcgacat tgagagaact
     1141 ctactcattt tatgccagat ctgccctagg cgatagtgag atttttctga ttcttcctta
     1201 ccttgaaact gtagataacg tgaaacgtat tctatcagaa gatagtgcaa atatagatgt
     1261 aagaaaatat gaaaaagaac agtcactttt gataatggat tctctaaaag gatactttgg
     1321 cttacaagaa ggtttgatcc catttttggt acagaccgca gatttcgcca aaaaatcagg
     1381 gaaaagcctc tctgtattat ctgacatggg atcatttttc tacaatgata agaaggacga
     1441 tctcttacaa tacgaattgg ccttgccttc taaatatgaa aaaatgaatt tgaaaggatt
     1501 ctgtgcatac catcaattag acttcgataa acgattctca gagaaggaga ggcaggatct
     1561 cattaagcat catggtagaa ccctgacgct agtgtcttct tcaacggtaa ctaaaggtca
     1621 taggaaggct gagtcagcta catgcaattg ataatagcca ttaatactac ccatagataa
     1681 tgaaattcga tttttttcgt aaaaagtcta atgttgaatt attaaatgtg gagagaaacc
     1741 agcaaaataa cagaaggtaa agtcgtgaca ggcggcgaag gggggaatgg cagtggtacc
     1801 ggtttgcagt agatacggat actcttctat cacgaaaagg ttcttgttga atcccggcga
     1861 atatacggct agatagaata tttcccattg taaattgggg tcaggttgtt tccaactagt
     1921 tgtaaataac tctccctctc atggtttcta gatatgctat gcttattaat gactcctcgc
     1981 caagtaatat aatgtcagat tcaggatgta atcgatcgct aatgctaatt gatacagcaa
     2041 ggaaactacc aaacctttat cgtctctttt ctcatcatga aagataagac tatgtttact
     2101 ccatttgtta gaagtcattt agtgaaaatt acagtcgcca tatacgtaaa ccgtccattt
     2161 tgaatgagtg gagaaaccga tgactacaca tcaatggcca cctctaacgt taaccgaatg
     2221 gaaagatacc tatgagacat tgcatatgtg gacacaaatc gtcggaaaga tccggcttgc
     2281 gctctgccct ccagtgaatc attggtggaa tgctactcta tatatcacac ctcgtgggct
     2341 ctctacgacc actatgccct acaaggatcg aaatcttcag atagacttcg actttataga
     2401 tcatctatta atcatccaga ctgacggtcc cacaaagaca atcgctctcc aaccaaggtc
     2461 agtagctgat ttttatcatg aggtcatggg cacattggaa tcacttggta tgcctgtaac
     2521 catctggact acacctgtcg aagtacaaga tcggacccca tttgaaaagg atgagaaaca
     2581 tgcggcatat gatccgaaat atgcacaaag gatttggcga attatggctg aggctagtag
     2641 ggtatttaat caatttcgtt ccaggtttgt tggcaaggtt agcccagtac attttttctg
     2701 gggagccttc gatctggctg tcacacgctt ctcgggacgt acagcacccc cacattcagg
     2761 tgcaccaaac atggcgcgtt ttgtagcagt ggaagcctat tcacacgaag tgagcagttg
     2821 tggattttgg ccaggtggag gtccagttaa tgaagcggct ttttacgcct atgcctatcc
     2881 agaacctcag ggtttcaaag attatcctat ccagcctcag gaagcattct atcataaaga
     2941 gatgggggag ttcctacttc cctatgaagt actccgcaat acgaagtcac ctgatgacgt
     3001 cctgttgtct ttccttcaaa caacatacga agccgaggca acatgcgcaa aatgggatcg
     3061 acaatcctta gaacgtcagt aagtgcatat caataatttt cagttttgaa ttttcactag
     3121 gaaagaaacc ggcaacagac tcagtaagag ttcaattatg cccaaatcct attacatcat
     3181 tttcagtaaa tcatttttat aatttgaaag gcgatcgtca atacacaatc aaaccattga
     3241 tcttattcac aaaaccaact tgtggccgtc tacgacggca tctttaaatc ttcaggttag
     3301 actattagaa gatgatttaa taaacatgat tgaaggagaa gcagaaaata caaaactttc
     3361 atcacctgtg agcgagttca gagatcatat tcaaggacct gcaactgcgc ctgtaacttt
     3421 ggtagaatat ggagattatg aatgtcctta ttgtgcccag gcctatctaa tcacaaaaga
     3481 aattcaagaa cgtttaggag ataaattacg tttggtattc cgtaactttc cacttaccaa
     3541 aattcggcca cacgcatatg aaactgcatt agcagcagaa gccgctgctg ctcaaggtaa
     3601 gttttgggat atgtatgatt atttattcaa acatggtcaa ggcgttacta atgatagctt
     3661 aagacggtct gctgctagct tgggactaaa tcttaccaag ttcgatagtg acttttataa
     3721 ccgattatat agcaatcaca tagacgagga tgtacagagt ggtaacagta gcggagtaaa
     3781 gggcaccccg actttcttta tcaacggtga actttataat ggttcttggg atctagatag
     3841 cctccttgga acacttgacg aggaaagtgt cttcagttgg aagcataaac aatgatctta
     3901 taattgagat agattgattc catttgagat gatacttgat gcagcagaaa cagttctagg
     3961 ctattttggt tttgatagaa gtgtctatgg aaataagaga aatataggac caagaaagtg
     4021 gagatggctg caagaacaga gacaagaaag agagaatgat atcagaacag aggttatttg
     4081 acgcctaatt ggaatctcat actactttgc ttgttactta tgttacctac cgcttctatg
     4141 actcgtaaat aacattaggg ggctatttgc acagagaatc ctaaaattaa aagggcagcg
     4201 cctatttgag cataccttgt ttctctcatt ctatgttctt tttccttttg attatgaatt
     4261 tcagtacttc cagattgctc ttctattgtt tctcttctac gaaaaacttt tccataggcc
     4321 ataaagatgg atgctagtag acttatgcac agacctgcta ccaacatgat atttctcatt
     4381 ctctcctgta gtgatacaac aaaatagata aattattatt gtaaaaaccg tggcgaacaa
     4441 attaccatgc cataggagga tcctagacac aactgaggtt tcgcggttat tttggaatga
     4501 gctcttcgta atgtgtaatc ttaggccc
//
LOCUS       DASPFX010000121         4620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_101842, whole genome shotgun sequence.
ACCESSION   DASPFX010000121 DASPFX010000000
VERSION     DASPFX010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4620
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101842"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            382..723
                     /locus_tag="VD694_02645"
     CDS             382..723
                     /locus_tag="VD694_02645"
                     /inference="COORDINATES: protein motif:HMM:NF036395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase family protein"
                     /protein_id="HXW11633.1"
                     /translation="MNKIIETIEKEILGWPYVTVESHRFGGIEFRLNKREMGHIHNEG
                     LADIPFPMKIRDELINSGLVKPHHVLPQSGWVSYWFHNVEKEDISTVIDLFRLRYEQL
                     KPKSSLKAIQQ"
     gene            752..1315
                     /locus_tag="VD694_02650"
     CDS             752..1315
                     /locus_tag="VD694_02650"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HXW11634.1"
                     /translation="MDLPWNDKRSNQFITNVGLITSDGPFGPNVMACEWTHHISYHPG
                     LIAVCIRPDDATHENIKQTKEFGVNLCATDQSVMSSVAGGYSGSKYDKVNALKELGFE
                     FYKAKKITPIMVNGAAVNIECILSKEIILGDHTTFIGEVIEASNNPDKLPLAYYGGKY
                     WTVNTDLVKPTERERERIKIVVEKYSK"
     gene            1356..1550
                     /locus_tag="VD694_02655"
     CDS             1356..1550
                     /locus_tag="VD694_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11635.1"
                     /translation="MTTLIAGMQNSVLVLESSKTGWKVHENLKGSHPQAISFDRLNPN
                     RVYSGTFGKGLWKTDDSGQT"
     gene            1590..2042
                     /locus_tag="VD694_02660"
     CDS             1590..2042
                     /locus_tag="VD694_02660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11636.1"
                     /translation="MSVSVSPLKEGNNGFNKVYVGTEPSALYISSDEGESWERMSGLN
                     SLESSATWIFPPRPWTHHVRWIEPDVNNFDYVFVAIEAGALVQSHDGGRTWIDRVKQG
                     PYDTHTLATHKKAPKRLYSSAGDGYFESFDYGESWNSPTEGLRHHYLY"
     gene            2073..2378
                     /locus_tag="VD694_02665"
     CDS             2073..2378
                     /locus_tag="VD694_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11637.1"
                     /translation="MIVSASLSVQQAHSIENAECFVYRRSANGENWKAVSKGLPESKG
                     TIITILASNPINSGEFFAINNRGIFSSTDSGDSWAAPDIPWPKEYLLQHPWALTVGK"
     gene            2878..4410
                     /locus_tag="VD694_02670"
     CDS             2878..4410
                     /locus_tag="VD694_02670"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HXW11638.1"
                     /translation="MREEKKRGRKEIEKHNTTKTTAVIYSSRSARFILVLLSSTLLVV
                     MFSETMLLPAIPEIMQDFKIPYSTAAWIFSAYLIVAAVMTPIAGKLSDIYGSKKVLLT
                     LLVLYIVGVIAGGFSENISFLLASRVIQGVGLAAVPVAFSIIRDSFPPEKLAMPVGVF
                     SSAASGGSIVGLLLGASIIQNFGWYATFFFIAPVAVIVTFMIARLVPADCKPEHLQLN
                     GMDNNTSSSKDAVTKDRKSMIDIKGAIALSATITSFLIALTFIENSNSLENSMEIAGI
                     SFIISAVSLILFIFIEKRTKTPLIELWLLKQRILLPSYIMMIITGTIIFLVYPTIVQL
                     VRSPQPAGFGGDAVYAAYVQLPFMIVFLIFSSSTSYIISKLGKVMPTVLGGAISIAGA
                     IGLLMLHSTGLFVSINLTIIAIGLALTMTAIWNLIVSSAPKEFMGISTGIGALLSFIG
                     MAIGPALAGTYIHTFQMSIEGTVGLFPSPESFNMIFLTAAMLSGVSLTFSLLLKKRCQ
                     KI"
BASE COUNT         1550 a          725 c          869 g         1476 t
ORIGIN      
        1 gccaattcct caagtcctgc ttgttgcata actttgagat aataaagcaa tttcttcttt
       61 ggttcactaa acccatcact aatattttct aaagcgtgtg aaataggcaa ttattgtata
      121 tattaaatag attatacata aaccctttgg tttataaatt gagatatcga gttgttgtag
      181 attctttttt tgtctaataa atattacata tattgtagtg tatatcgtaa gtctctaata
      241 ctgctaattc ataaaaataa tacttcaatc gctttattta gtagttacaa ggtctaactc
      301 ttcattttct attaattatc taggaataaa tataatttgt aaacctgtgt atttataaac
      361 ttagaaatga atataatatc tatgaataaa attatagaaa ctattgaaaa agagatacta
      421 ggttggcctt atgttactgt tgaatctcat agatttggtg gtatagaatt tcgtctaaac
      481 aaaagagaaa tggggcatat acataatgaa ggtttagctg atataccgtt tcctatgaag
      541 attcgagatg agcttattaa ctcgggactg gttaaacctc atcatgtatt acctcaatca
      601 ggatgggtta gctattggtt tcataatgtt gaaaaagagg acatatcaac agtaattgac
      661 ctatttagat tgagatatga acagctaaaa cccaaaagct cattaaaagc gatacaacag
      721 taattcctaa aaaaattagt agtgatattt cgtggactta ccatggaatg ataaaagatc
      781 aaatcaattt ataacaaatg taggtttgat tacaagcgat ggtccttttg gaccgaatgt
      841 aatggcctgt gaatggactc atcatatatc ctatcatcct ggtttaatag ctgtttgtat
      901 aagaccggat gatgcgactc atgagaacat aaaacaaacc aaggaatttg gagtaaacct
      961 atgtgctaca gatcaatcag tgatgtcaag tgtagcaggc ggttatagtg gtagtaagta
     1021 cgacaaggtc aatgcattaa aagagcttgg atttgaattc tataaagcta agaagataac
     1081 cccgatcatg gtaaacggag ctgcagtgaa tattgaatgt atattatcta aagaaattat
     1141 cttaggtgat catactacct ttattggcga agtcattgaa gcttctaata atcctgacaa
     1201 actaccactt gcctactatg gaggaaagta ttggacggtg aatacagatt tagtaaagcc
     1261 gactgagaga gagcgtgaaa gaataaaaat agtagttgaa aaatattcaa aatgatacaa
     1321 gatgagacac gaaaagtagg tggttctttc tttcaatgac gacgcttata gctggaatgc
     1381 aaaattcagt tcttgtactt gaatcttcaa agactggatg gaaggttcat gagaatttga
     1441 aaggaagtca tccacaagct atatcattcg atcgtctgaa tccaaacaga gtatacagtg
     1501 gaacgtttgg caagggtttg tggaaaactg atgatagtgg gcaaacttga aatagtattg
     1561 gaaagaatga aatctccaca tctaatataa tgtcggtttc agtcagcccc ttgaaagaag
     1621 gaaataatgg cttcaataag gtatatgtgg gaactgaacc aagtgcactt tatatatcaa
     1681 gtgacgaagg tgaatcatgg gaaagaatga gtggcctcaa cagtttggaa tcatctgcta
     1741 catggatctt tcctccaaga ccttggaccc atcatgttcg ttggattgag ccagatgtaa
     1801 acaattttga ttatgttttt gttgccatag aagctggagc cctcgtgcaa agtcatgacg
     1861 gtggcagaac ttggatagac cgagtgaagc aaggtcccta tgatactcac actttggcaa
     1921 ctcataagaa ggcacctaaa cggttatact cttctgcagg tgatggctat tttgaaagct
     1981 ttgattatgg agaatcctgg aatagtccaa cagaaggact tagacatcat tacctctatt
     2041 gacttgctgt agattctgct aatccccaaa ctgtgatcgt atcagcttcc ctatcggtac
     2101 agcaagcaca ttctattgaa aatgcagagt gctttgtata caggcgatcg gcgaatggcg
     2161 aaaactggaa ggctgtttca aaaggtcttc ccgaatccaa gggaacaata attacaatcc
     2221 ttgcgtcaaa tcctattaac agtggagaat tttttgctat caacaaccgt ggaatattta
     2281 gctctactga ttcaggtgat tcttgggcag cgcctgatat tccttggccc aaagagtatc
     2341 ttttacaaca tccttgggcg ctcacagtcg gaaaataaag ttgtatgtaa gcgaataaga
     2401 tatacaagat taatctattg aggactgcgt aaagggataa aacagcttgg aactttgata
     2461 tactgaatat ttacttgtaa aatatagtat ttaagcaata ggataactta agatgattct
     2521 gtaaatttat tttgatacta agttgatcct acaaagagat tttatttcta tttcatagtt
     2581 attctgaaaa aatattggag acacagagat aagataaatg gtttatacat atatatagta
     2641 aaaggtcaaa taattcatag tattacattt taacataaat taattgttaa taacaaatac
     2701 ataaattaac ttctgcgccc tttttttctg ctgttactga agaaatggaa gaaagagtaa
     2761 acttaaaaag ttaagaaaaa tagtttgtct aaggtattga aaatgatcaa gtaaaataat
     2821 aattagtata atttgtaaac ttcagaattt atatattctt aaattaaagt ttctgaaatg
     2881 agagaggaaa agaaaagagg acgaaaagag atagaaaagc acaatacaac aaaaacaaca
     2941 gcagtaatct atagtagtcg ttcagcgcga ttcattctag ttttacttag tagtactctt
     3001 ttggtggtaa tgttctcaga aactatgcta ctgccagcta ttcctgagat aatgcaagat
     3061 tttaaaatac catatagtac tgcagcttgg attttcagtg catatctcat tgtagctgct
     3121 gttatgacac ctattgcagg taaactttca gatatttatg gaagcaagaa agtactgctt
     3181 accttgcttg tattgtatat agtaggtgtt attgcaggag gattttccga aaacatatct
     3241 tttcttcttg ctagcagagt aatccagggt gtaggcttag ctgcagttcc tgtagctttt
     3301 agtattatta gagattcgtt tcctccagag aaacttgcta tgcctgttgg agttttcagc
     3361 tcagctgctt cgggtggatc tattgtagga ttactcttag gtgctagtat aatccagaat
     3421 tttggatggt atgctacatt tttctttata gctccagtag ccgtgattgt aacttttatg
     3481 attgcaagat tggtcccagc tgattgcaag cctgagcatc tacaattaaa tggaatggat
     3541 aacaatacta gtagcagcaa agatgccgtc accaaagata gaaagtccat gatagatatc
     3601 aagggtgcta tagcactttc agctacgata acatctttcc tgattgcact gacgtttatt
     3661 gaaaatagta attcattaga aaattcgatg gagattgcag gaatttcttt tataatatca
     3721 gcagtttctt taattctttt catctttata gaaaaaagaa cgaaaacacc tttgattgaa
     3781 ttgtggttgt taaaacaaag gatcttgttg ccatcttaca tcatgatgat tattactggg
     3841 actataatat ttcttgtata ccctaccata gtacaattag taaggagccc tcaaccagca
     3901 ggatttggtg gagatgctgt atatgcagct tatgtccagc tgcccttcat gatagtattt
     3961 ttaatattct ctagttcaac atcttatatt atatctaaac taggaaaagt aatgcctacg
     4021 gtgttaggag gtgcaatcag tattgcagga gctattggtc ttttgatgct tcactctaca
     4081 ggattatttg tatctataaa tcttacaata attgcgatcg gattagcact gacaatgact
     4141 gcaatttgga acttaattgt ctcttcagcg ccaaaggaat ttatgggaat atcgacagga
     4201 ataggagcac ttctttcatt cataggaatg gctataggtc ctgccttggc tggcacatac
     4261 atacacacat tccagatgtc gatagaaggt actgttggtt tatttccatc tccagaatca
     4321 ttcaatatga tctttcttac agctgctatg ctgtcaggtg tgtcgttgac tttttcttta
     4381 ttgttaaaga aaagatgtca aaaaatataa aaatgataac gtaaaaacat atgaatttcc
     4441 aagaactgga ttcatagact catatcaatc actaaatctg ttattttata acatgggcca
     4501 aaaatatagt gtcaaaaaaa attcatacac ctctgagccc aattatgaat attttccaat
     4561 tattaaataa tcaatcttaa aaatctttaa actttattaa ttttctttaa tatgacgaca
//
LOCUS       DASPFX010000122         2459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1012659, whole genome shotgun sequence.
ACCESSION   DASPFX010000122 DASPFX010000000
VERSION     DASPFX010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012659"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1112)
                     /gene="pheT"
                     /locus_tag="VD694_02675"
     CDS             complement(<1..1112)
                     /gene="pheT"
                     /locus_tag="VD694_02675"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HXW11639.1"
                     /translation="MPVVEFPLEDINRLFSDYDLEYILDMLPFIGLDLEHQDDKSIRL
                     EYSPNRPDFSTFYGISRALKGLLGKEVGIPKFEVFENGKNLIKVDPSVSDIRPFIVGI
                     VAKDHKLDNKTIKQIVSMQEDLHNGLGRKRSKASIGFHNLDHVHFPLEYTIVDDLSFI
                     PLDHSSPLTLTEILSNTEQGKKFGKLLKEPGYPVLRDSKGNVISFPPIINSEATKIKD
                     GVSNLFVEVTGINKKSVYSVLNNIIATLGDIGFKLEAVIGQHGDSREIFNANLNTTLS
                     NIKTDYINKALGLSLSNEELIKCLQKSRLDATSIDASSINCVIPSYRIDIFGPIDVVE
                     EVAIGYGLYNMEPSLPESRLYGNKSKQNYFFDKIRQA"
     gene            complement(1100..>2459)
                     /locus_tag="VD694_02680"
     CDS             complement(1100..>2459)
                     /locus_tag="VD694_02680"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF003210.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HXW11640.1"
                     /translation="NKDSIVELVPEKSNDSSSNNKIKNSVTLTLPERRIVDSIRSKGQ
                     KAITISDLAKISGLSNIEFGVGVQNALRNGWLTKAADTLNLTEISEKLSHEETLLEKI
                     SKQKKMKLSELNEQELRGFTLLKKRPGYLRETIVKFFNISLTNEGKKIVPTIKKDEQD
                     GIGTITAEILNSGKWRNKRFTEIDVSSPVRSHGIGRTHPLTDIINEIREIFVSMGFSE
                     IEGPTIQSCFWNFDVLFTPQDHPARDMQDTFYISNFTDESIDPIISKQVSNFHTKEWN
                     YDWDIEKSKQTVLRTHTTPVTVKFLSESKLREGRIFSIGRVFRNEKMSYKHLMEFHQI
                     EGIVIGETVNLRDLMGLQKQFYSKLGLDKVKFWPTYFPYTEPSLQSMVFIDKLGKWVE
                     LFGMGMFRPEVTQSVGITNNVLAWGGGLERIAMIRYGLDDVRELYDNKLSWLRKQPLC
                     PL"
BASE COUNT          723 a          478 c          382 g          876 t
ORIGIN      
        1 gcctgtcgaa tcttgtcaaa aaaataattt tgcttgctct tgttaccata aagtcttgat
       61 tctggtaaag aaggttccat attataaagc ccatatccta ttgcaacttc ctcaacaaca
      121 tcaataggac caaaaatatc gattctatag cttgggatca cacaatttat actactagcg
      181 tcaatagatg tcgcgtccaa cctacttttt tgaagacatt ttatcaattc ctcgttcgat
      241 aatgacagac caagtgcctt gttgatgtaa tctgttttga tgttcgataa agtagtattc
      301 aagtttgcat tgaaaatttc gcgagagtca ccatgttgcc caatcacggc ctccaactta
      361 aatccaatat cacccaacgt tgcaataata ttgttcaaga cactgtaaac tgatttcttg
      421 ttaataccgg taacttcaac gaataaatta ctaacgccat ccttgatttt tgttgcttcg
      481 ctattaatta taggaggaaa tgaaatcaca tttcccttag aatcccttaa cacaggatat
      541 ccaggttctt ttaacaactt tccaaatttc ttcccttgtt ctgtattgga taatatttca
      601 gttaaagtta atggcgaaga atgatcaaga ggaataaaac tcaggtcatc tactattgtg
      661 tattccaatg gaaaatgtac atggtccaaa ttatgaaatc caatcgatgc ctttgacctt
      721 tttctgccta gtccgttatg aagatcttct tgcatagaaa caatttgttt gatggttttg
      781 ttatctaatt tatgatcttt agctactatc cccacaataa atggtcgtat atctgaaaca
      841 gaagggtcca ctttgatgag atttttacca ttctcaaata cttcaaattt tggtattccc
      901 acttcctttc ccagtaatcc cttgagagct ctggaaattc catagaaagt agaaaaatcc
      961 ggacggtttg gactgtactc caatctaata ctcttatcat cttggtgctc taaatccagt
     1021 cctataaatg gtaacatatc taggatatat tctagatcgt aatcagaaaa aagcctattg
     1081 atgtcctcta gtgggaattc tacaacgggc ataatggttg cttccttagc cacgatagct
     1141 tattatcgta gagttcacga acatcatcta atccatatct tatcatcgca atgcgctcaa
     1201 gccctcctcc ccaggcaagt acattgtttg ttataccaac tgattgagtt acctcgggcc
     1261 gaaacatacc cataccaaat aattcaaccc acttacctag tttatctata aagaccattg
     1321 attgtaaaga tggttctgta taaggaaaat atgtaggcca aaactttact ttatccaatc
     1381 cgagctttga atagaattgc ttctggagac ccatcaaatc tctcaagttt acagtttcac
     1441 ctattactat tccttctatc tgatgaaatt ccattagatg cttataagac attttttcat
     1501 ttctgaaaac tcgtcctatt gaaaaaattc tcccttctct caacttactt tctgaaagga
     1561 attttacagt aacaggagta gtatgggtcc ggagaacggt ttgctttgat ttttcaatgt
     1621 cccaatcata attccattct tttgtatgaa agtttgatac ttgtttacta ataataggat
     1681 ctatgctttc atcagtgaag tttgatatgt agaatgtatc ttgcatatct cttgctggat
     1741 gatcttgtgg tgtaaataga acatcaaaat tccaaaaaca tgattgaatt gttgggcctt
     1801 ctatttcaga aaatcccatt gatacaaaaa tttccctaat ttcattgatg atatcggtaa
     1861 gtggatgagt ccttcctatg ccgtgagaac gtactggaga agagacatcg atttcggtaa
     1921 atcttttatt tctccatttt ccactattta atatttcagc tgtaattgta cctattccat
     1981 cttgttcatc tttctttatg gtcggtacta ttttttttcc ctcgttagtt agagagatat
     2041 tgaaaaattt tacaatagtt tctctaagat atcctggacg tttttttaga agagtaaatc
     2101 cacgtaattc ctgttcattt aactctgaaa gtttcatctt cttttgtttt gagattttct
     2161 ccaaaagagt ctcctcgtgt gaaagttttt ctgaaatttc tgttaaattc aaagtatctg
     2221 cagctttagt cagccagcca tttcgaagag cattctgtac tccaacgcca aattcaatat
     2281 ttgataaccc tgaaattttg gcaagatcac taatcgtaat ggctttttgg cctttgctcc
     2341 ttatagagtc aactattctt ctttctggta atgttaaagt gactgaattt tttatcttat
     2401 tatttgaaga actatcattt gatttttctg gtacgagttc aacgatagaa tctttgttg
//
LOCUS       DASPFX010000123         2936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_850346, whole genome shotgun sequence.
ACCESSION   DASPFX010000123 DASPFX010000000
VERSION     DASPFX010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_850346"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            465..1820
                     /gene="thiD"
                     /locus_tag="VD694_02685"
     CDS             465..1820
                     /gene="thiD"
                     /locus_tag="VD694_02685"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HXW11641.1"
                     /translation="MLVNSALSIAGSDSSGGAGIQADMKTMSALGIYSCTVITAITAQ
                     STSNVDYILPLDAQIIKKQIKSVLSDIPINAIKIGMVYNNEIITTVSDILNQSKIPIV
                     LDPIISAGTGAELFQKEFLEDFKSKLVPICDVITPNIHEAETLSGIKIKTEKDIRNTA
                     SKIQELGAKNVIVKGGHFRNDNETIVDMILDEQGKFTVFKNPRMKIVETHGSGCNFSA
                     AVTSFLAMKYPIVNACFLANKYVHKSIINTVKIGKGIPVNNPISKMYEESSRYQVIEE
                     LGRAVENLVSLKNFVELIPETQSNLVYAIPNAKGLEDVAGVNGRIVKAGNKSVPASGI
                     KFGASKHVASSVLEYMKTNQMVRSALNIKNDKSILNRCKKLFSVSHYERNLEPKIIKE
                     KEGNTIPWGVKMALSINPDADIIYHSGDVGKEPMIVIFGQSPQDVVDKVKKMLYNRNL
                     E"
     gene            1861..2568
                     /locus_tag="VD694_02690"
     CDS             1861..2568
                     /locus_tag="VD694_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HXW11642.1"
                     /translation="MKAIILAGGLGTRLQPYTFFIPKPMLPLGNKPLLEHIIEWLKND
                     DNNIDHIIICVSYLHRTIEDYFEDGSRLGIKIEYARSDRPLATAGQLMTARKFINDTF
                     VCVYGDSIYEFSLREMIKEHDRLDAFISMALLSYKTRLKYGFIDINGNNKVTAWNEKP
                     EIKGLINIGCYVMEPEFIDLIPSSNAYGMDDAVRKALDMKKLVNGFKIESGFIDIGDK
                     KSYLQTYKKYVERLGKI"
     gene            2572..>2936
                     /locus_tag="VD694_02695"
     CDS             2572..>2936
                     /locus_tag="VD694_02695"
                     /inference="COORDINATES: protein motif:HMM:NF024951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar nucleotidyl transferase"
                     /protein_id="HXW11643.1"
                     /translation="MSIVFFEDTSWKNLVPLSYTRSMFDIKIGSLTTREHFNNKSSKL
                     LTRRYLEGVTKERHPQDAVNKFEYDSDDIYVNSLFLPLTPFFKKWNVKKRFLISYRGK
                     ILMGRVDRSDFEYIYESVV"
BASE COUNT         1079 a          451 c          553 g          853 t
ORIGIN      
        1 aatatgtgga aagactattt acaggacaac tgaaaataca aatttgatca cgtatcatac
       61 tgatgaaaaa agaaacatgt ttgttgaacc tcattgtatg aatctgttaa agaaatttga
      121 aatagcatat ggtaaggagt ttttttatcg ctaagctatt caatcatgta ccagaataaa
      181 ctccacaata cttaacatca agcagataca aacataatca ttgagtaatc aagatgccac
      241 taaatacact aaatctttac ttacactacc aaacattcag tatctggtcc aaggtctaga
      301 tgtgctctta caaaccgatt tagacggcga taaacgtacg aaggtaattg agttacggga
      361 tgaactactt tcttatatca atagcatttt tacagattat gaataaaagt aatactcaat
      421 ttgaattccg atagactgaa taatccaatt ttatcatatt tttgatgttg gtaaattctg
      481 cactttcaat agcaggcagt gattccagtg gtggtgccgg aattcaggca gacatgaaaa
      541 caatgtctgc tttgggaata tattcatgta cagtaataac tgccataact gcacaaagta
      601 cttctaatgt agattatatt ctcccactag acgcccaaat tattaaaaaa caaataaaat
      661 cagtcctctc ggatattcct attaatgcaa tcaaaattgg aatggtttac aataacgaaa
      721 taattacgac agtaagtgat atcttgaatc aatccaaaat cccaatagtg cttgatccaa
      781 taatctcagc tggaacgggg gccgaattat ttcaaaagga atttctagag gattttaaga
      841 gtaaactagt tccgatttgt gatgttatta cccctaatat ccatgaagca gaaacgttat
      901 ctggaatcaa gataaaaact gaaaaagata ttagaaatac ggcatcgaaa atacaagagt
      961 taggtgcaaa aaatgtaata gtaaaaggag gtcattttag aaatgacaat gagacgatag
     1021 ttgacatgat tttggatgaa cagggaaagt ttactgtgtt taagaatcct aggatgaaaa
     1081 ttgtagaaac acatggaagc ggctgtaact tttctgctgc ggtaacatca tttttggcca
     1141 tgaaatatcc gatcgtcaat gcttgttttt tggcaaacaa gtatgttcac aaatctatta
     1201 tcaatactgt gaaaataggt aaggggattc cagtcaataa cccgatttca aaaatgtatg
     1261 aagagtcaag tagatatcaa gtgatagaag aattaggcag ggctgttgaa aatttagtaa
     1321 gtttgaaaaa ttttgtagag ttgattccag aaacacaatc aaatcttgtt tatgcaatac
     1381 caaatgctaa agggctagaa gatgtggctg gtgtgaatgg taggatagta aaggcaggaa
     1441 acaaaagtgt gccagcatca ggcattaaat ttggtgcttc aaaacacgta gcttcttcag
     1501 tccttgaata catgaagaca aatcaaatgg ttagatccgc gcttaacatc aaaaatgaca
     1561 agagtatact caacagatgc aagaaactat ttagtgtaag tcactatgaa agaaatttgg
     1621 aaccaaagat aatcaaagaa aaagaaggta atactattcc atggggagtc aaaatggctc
     1681 tttcgataaa tcctgatgcg gatatcatat atcattcagg tgatgttgga aaagaaccta
     1741 tgatagtaat ctttggacaa agcccgcaag atgtcgtaga taaggtcaaa aaaatgctct
     1801 ataatagaaa tttagaatag tttttactta tattagagtt cagtttatct ataattttaa
     1861 atgaaggcca taatcttagc tgggggtctt ggaacccgac tgcaaccgta tacttttttc
     1921 attccaaaac caatgttacc ccttgggaat aaacctctat tagaacacat cattgaatgg
     1981 ctgaaaaatg atgataataa tattgatcat ataataattt gtgtgagcta tctacataga
     2041 actatagaag actatttcga ggatggcagt aggcttggaa taaaaattga atatgcaaga
     2101 tccgacagac ccctggcaac tgcaggtcag ctaatgacag ccaggaagtt tatcaatgat
     2161 acattcgttt gtgtgtatgg agactccatc tatgagttct cacttagaga aatgataaaa
     2221 gagcatgata gacttgatgc atttatttca atggccttgt tatcgtacaa aacaagactc
     2281 aagtacggct tcatagacat aaatggaaat aataaagtta ctgcgtggaa tgaaaaaccc
     2341 gaaataaagg gattgataaa tataggatgt tatgtgatgg agcccgaatt tattgatttg
     2401 ataccatcct caaatgccta tggaatggat gacgccgttc gaaaagcatt ggatatgaaa
     2461 aaattagtga atggatttaa aatagaatca ggatttattg atataggtga taagaaatca
     2521 tatctacaaa cctacaagaa atatgttgaa agacttggaa aaatctaggc catgagtatc
     2581 gttttctttg aagataccag ttggaagaat cttgttcctc ttagctatac tagatctatg
     2641 ttcgatatta aaattggatc attgacgact cgtgaacatt tcaataacaa atcctcaaag
     2701 ttacttaccc gacgttatct tgaaggggta accaaagaga gacatccaca agacgctgta
     2761 aataaatttg aatatgacag tgatgatata tacgtaaatt cattattcct tcctctcact
     2821 cctttcttca aaaaatggaa tgtcaagaaa agatttctga tatcgtacag aggcaagata
     2881 ctcatgggaa gagtcgatag atcagatttt gagtacattt atgaatcagt agtaga
//
LOCUS       DASPFX010000124         2853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1578029, whole genome shotgun sequence.
ACCESSION   DASPFX010000124 DASPFX010000000
VERSION     DASPFX010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1578029"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..847
                     /locus_tag="VD694_02700"
     CDS             <1..847
                     /locus_tag="VD694_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW11644.1"
                     /translation="YQWNGETLINPSLILDLPAEPGPNHDGGKIIIGPDGYLYAVLGD
                     LNHDGQLQNFPDGPPPDDTGSIFRINPADGSAPTDNPFIGSGTEVLNKYYAYGVRNSF
                     GMDFDPLTGNLWDTENGPASYDEINLVRPGFNSGWQTIMGPISISGDTEDDLVNFPGS
                     HYADPLFSWTEPVAPTDIEFFNSSNLGERYTNNIFVGDIVRGNLYFFEVNENRDGISL
                     DTTQQQAGLSDLVVDSEDELSAITFGSGFGGITDIETGPDGNLYVLSFDDGIIYEISS
                     STTTQ"
     gene            974..1636
                     /locus_tag="VD694_02705"
     CDS             974..1636
                     /locus_tag="VD694_02705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11645.1"
                     /translation="MFSLIFTLLLLSPCLFLPLSLGYVYAQTEVGSASSNNHNTISLY
                     KNAQYNFDVQYPSNWQKIEFTQGIERGGRNTVVNFLSPSEGTADKFREYFLVKVDDLR
                     PEQGFAITSPSSYSLLTEYVNHQISDYKKLYQGFQLTESPTSSLLLNKTDNNGSPNDY
                     SLSNKIVYTYDDATAGKIKIMEVYLLKNNKIFSLSFHSEASKYSTYLPTIQNIVDSVH
                     IS"
     gene            1916..2581
                     /gene="nth"
                     /locus_tag="VD694_02710"
     CDS             1916..2581
                     /gene="nth"
                     /locus_tag="VD694_02710"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HXW11646.1"
                     /translation="MDSMGIIIKKMEKVLHDKKPYRFTALKQLQAEESGDPFKILIGT
                     ILSSRTRDENTTKVVKILFKRFRNAKELAEGNIEEVKQIIHSIGFYNVKAKRVVEVSQ
                     LIVKKFNGKVPNRIEKLLELPGVGRKTANCVLVYGFNKPAIPVDIHVHRISNRIGLVN
                     TKTPEKTEIELSNIVDRKYWIKLNNTFVMYGQNICLPVTPNCKLCELKEMCKFYHQIG
                     SKF"
     gene            complement(2578..>2853)
                     /locus_tag="VD694_02715"
     CDS             complement(2578..>2853)
                     /locus_tag="VD694_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11647.1"
                     /translation="ITNGKRIVVDKLSLDGFTLDSIAVHGKDNSDSPLNVYEGNLSFD
                     VIYGNPAESPLYYLPVGMLIGVGGLVIGLVILKKRKPLLEEDEQKGS"
BASE COUNT          955 a          510 c          524 g          864 t
ORIGIN      
        1 ataccagtgg aatggagaga ctcttatcaa cccttccctc attctggatc tgccagcaga
       61 accaggacca aaccatgatg gtggcaaaat aattattggg ccagatggtt atttgtatgc
      121 agtcctaggg gatctaaacc atgatggtca gcttcagaac tttccagatg gcccgcctcc
      181 agatgatact gggagtatat ttaggataaa tccagctgat gggtcagctc cgaccgataa
      241 tccctttatt ggaagtggga ctgaagtttt gaacaagtac tatgcgtatg gtgtccgaaa
      301 tagttttggg atggactttg atcctcttac cggcaatcta tgggatacag aaaacggtcc
      361 tgctagttat gatgaaataa atttggtacg accaggtttt aacagtggtt ggcagacaat
      421 tatggggcct atttcgataa gcggagatac tgaagacgac ctggttaatt ttcctggttc
      481 acattatgca gatccacttt tcagctggac agaacctgtt gcgccaactg atattgaatt
      541 tttcaattct tcaaatctag gggaaagata tacaaataat atttttgtag gcgacatagt
      601 aagggggaat ttgtacttct tcgaagtgaa tgaaaataga gatggaataa gtctcgatac
      661 aacccaacag caagcaggtt tgtctgatct tgtagtggat agtgaagacg aattatctgc
      721 gattactttt ggaagtggat ttggaggcat aaccgacatt gagacagggc cagatggaaa
      781 tctgtatgta ctatcatttg atgatggcat aatctatgaa atttcatcta gtaccacgac
      841 tcaataagga ccaatagtaa tcaagtcaaa gcatagcttt aagtttagta caagctcagt
      901 acatatagat caaaatatgt ttagagatta gcttagacaa aacaataata gggcattttt
      961 atcaagagaa gttatgtttt ccctgatttt tactttgttg ttattatcgc cttgtctatt
     1021 tctacctctt agtttaggct atgtatatgc acagactgaa gtaggttcag catcttcaaa
     1081 caatcacaat accatttcat tatacaaaaa tgcacagtat aattttgatg tgcagtatcc
     1141 ttcaaactgg caaaaaatag aatttactca aggtattgag cgaggcggac gcaatacagt
     1201 tgttaatttt ctatctccct ccgaaggtac agctgataaa tttagagaat atttcctagt
     1261 taaagtagat gatctacggc ctgaacaagg ctttgcaata acatctccat cctcttactc
     1321 attactaact gaatatgtta atcatcagat tagtgactat aagaaactat atcaaggatt
     1381 ccagctaact gaatcgccta catcctcatt attattaaac aaaactgata acaatggtag
     1441 tcccaatgat tattcactgt ctaataaaat agtatacaca tatgatgatg ctacagctgg
     1501 aaaaattaag ataatggagg tttaccttct caagaataat aaaatatttt ctttgtcatt
     1561 tcattctgag gcgtcaaagt attcaacgta tttgccaaca atacaaaata tagttgattc
     1621 agttcatatc tcttagtttt cttgacaatc tattcaaaca atagctttac ctgatttcat
     1681 attgatacaa gcaaagtaaa tgacctgtag ctgcgcagcg accaccacat aggattaatg
     1741 atcttattta ccagatccaa aaaatagtac caggcttgca ccccttgagc tcttttcaat
     1801 agataaccat agataaccat actcacttta tcgctatcct ttttagatta aatcaaccga
     1861 ttcggtatgc ttaagtaact ttaaagttat attttctaga cgacctgctt acaccatgga
     1921 ttctatgggt attataatca aaaaaatgga aaaagttctt catgataaaa agccttatag
     1981 attcactgca ctgaagcaac ttcaggcaga ggaatctggc gatcccttca agatacttat
     2041 agggactatt ctttccagcc gcacaagaga tgaaaatact acaaaagttg tcaaaatatt
     2101 attcaaacga ttcagaaatg ctaaagaatt ggctgaagga aatatagaag aagttaaaca
     2161 aataattcat agtataggtt tttacaatgt caaagcaaag agagtagtag aggtttcaca
     2221 gttaatagta aagaagttta atggaaaagt tccaaatcgt attgaaaaac ttctagaatt
     2281 accaggagtt ggaagaaaga cggcaaactg cgtcttagtt tacggcttca ataaaccggc
     2341 tatacctgta gatattcatg ttcatagaat ctcaaataga ataggacttg tgaacactaa
     2401 aaccccagag aagacggaaa ttgaacttag taatattgtc gacagaaaat actggatcaa
     2461 actgaataat acatttgtta tgtatggtca gaatatttgt ttgccggtta cacccaattg
     2521 taagctatgt gaattaaagg aaatgtgtaa attttatcat caaattggtt ctaaattcta
     2581 gctccccttt tgctcatcct cctctaaaag aggctttctt ttcttaagta taactaatcc
     2641 tatgacgagc ccacctaccc caattagcat gcctactggc aaatagtaaa gaggagactc
     2701 agcgggattg ccataaataa catcaaatga tagatttcct tcatagacat taagtggaga
     2761 atcagaatta tccttgccgt gtactgcaat tgaatctaat gtgaaaccgt caagagacag
     2821 cttatcgact acgattcttt ttccgtttgt aat
//
LOCUS       DASPFX010000125         2345 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1745607, whole genome shotgun sequence.
ACCESSION   DASPFX010000125 DASPFX010000000
VERSION     DASPFX010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1745607"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..882
                     /locus_tag="VD694_02720"
     CDS             <1..882
                     /locus_tag="VD694_02720"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HXW11648.1"
                     /translation="HILWSLGTENLHCLIEDWKANVVNSIISSNQTERLAEYSLHVSR
                     LLAYPDLDVKAKLKEIDSMSDELSSSIKKLTPLRPTQLIDEINNYLYKEKEFKPNLQD
                     YYNPLNSYLNVVIERKTGIPITLSILYMRIAHNLGFVLYPVNFPSHFLLKHILDGDNS
                     EIIIDPFNKGRIMDDYSLKELLDQFFPQRNVPLTRSFVEKATAAQVIIRMLNNLKSSY
                     YESQDVDKAEIANEMIVSIDQHSPDAIRDRGMILLKRGKPFEALEMLKLYLELDPEAS
                     DADAVLDIIRQTRELNK"
     gene            complement(1127..1288)
                     /locus_tag="VD694_02725"
     CDS             complement(1127..1288)
                     /locus_tag="VD694_02725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11649.1"
                     /translation="MAGGKEQVNLTESEWQIVLDALSNTIFNEELTEESRKNAKELFL
                     KLQKQLPQR"
     gene            complement(1787..>2345)
                     /locus_tag="VD694_02730"
     CDS             complement(1787..>2345)
                     /locus_tag="VD694_02730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11650.1"
                     /translation="LSDPSLSVKKQIAKIENLNRMITSCDVHVKSTNDKKIILPTGDG
                     MAIGFLLHPELPLRLGIELHKKLRSYNYDKKGKEDSIGVRIGISSGPVFIVSDISGNQ
                     NVWGPGIIIARRVMDLGDNMHILLADPLASQLIALKDEYRMVVNPISNYEIKHGQTIT
                     LYSAYSNEFGNSTMPAKVTYSRDKK"
BASE COUNT          717 a          422 c          432 g          774 t
ORIGIN      
        1 catatattgt ggtcattggg aactgagaat ctgcattgtt tgattgaaga ttggaaagca
       61 aatgttgtta attctatcat ttcttcaaac caaacagaaa ggttagcaga gtactctctt
      121 catgtttcca gactcttagc ctaccctgat ttggatgtaa aagcaaagtt aaaggaaata
      181 gatagtatga gcgatgagct cagttcatca ataaagaagt tgacacccct caggcctaca
      241 caattgatag atgagatcaa taattatctg tacaaagaaa aggagttcaa acccaacctg
      301 caggactatt ataatcctct gaatagctat cttaatgttg ttatagaacg caagacagga
      361 ataccgatta ctttatcgat attgtacatg cgaattgcgc ataatttggg ctttgtccta
      421 tatccagtta atttcccgtc acacttttta ttaaagcata ttttggatgg agacaatagc
      481 gagataatta ttgatccttt caataagggc agaattatgg acgattattc tttgaaagaa
      541 ttgcttgatc agttttttcc ccagagaaat gttcctttga ctcggagttt tgttgaaaag
      601 gcaacagcag ctcaggttat aattcgcatg ctaaataacc tcaagagtag ctattatgag
      661 tcacaagatg tagataaggc tgaaattgca aatgagatga tagtttccat cgaccagcat
      721 agcccagatg caatacgaga tcgagggatg attttattaa agagaggaaa accatttgaa
      781 gcgctagaaa tgttaaagtt ataccttgag cttgatccag aggcttctga tgcagacgcg
      841 gtacttgata tcataaggca gactcgagaa ttaaataaat aagtaaatat ataataatag
      901 tagggaagcc tgcttgggat ctcgatcaat ctaacgatct atccatctaa catctggcca
      961 ctaaccatat gcctcttctc ctcacaaaca acgcacggtg atgataaggc aaaccaatag
     1021 aaaacgaata ctggtgtgct cttattggaa tggaggaaca ggaggaaagg agagtaaaca
     1081 ttgactttaa tctaaataca ttatgaatga agttatcatg aatggtttat ctttgaggca
     1141 attgcttctg taattttaga aataattcct ttgcgttttt tcttgattct tcagttagtt
     1201 cttcgttgaa tatggtatta ctgagagcat ctagtactat ttgccattca gattcagtta
     1261 gatttacctg ctctttaccg cctgccattc ctgatacatg ctgcagtttg tgactctaat
     1321 aaaatcttat tcttacctga tagaggaata atttgtgtct ttaaacaata acgctacaac
     1381 aaggcattac tacgtctacc cgctcgtaaa ttgtgttaac aggcaagtat cagatttttt
     1441 gatttatttt gatctattta acaaatttcg gtttttctaa cgctaatcaa caacttcata
     1501 aaaactcaaa gcggagtatt ttttatccaa ctttgctgca attacataat agtaggtcca
     1561 ggtggctcct ttggcttaag ccagtacaac tgctgcaagg ttttgtgttc atcaccacct
     1621 atgcctacct gcttgttttt ttatgtattc aatcttatca acaattaaaa ctagatgacc
     1681 ggaaatgttc gtttcagggc aattggcttg gcatactatg attgatgtct aagctcatct
     1741 attattgaat aaacccaagc tgacgtgata ttatttgtgt gaatttctat tttttatctc
     1801 tactataagt gactttagca ggcattgtag aatttccaaa ttcgttcgag tatgcggaat
     1861 aaagtgtaat tgtctgtccg tgttttattt cataatttga tatagggttt acgaccattc
     1921 tgtattcgtc cttgagcgca attaactggc tagccaatgg atctgccagc aatatatgca
     1981 tattatcacc tagatccatg acccgccgtg caataataat tcctggaccc catacatttt
     2041 ggttgccact tatatcactt acgataaaga ctggacctga gcttattccg atacgtacgc
     2101 caattgaatc ctctttgcct tttttatcat aattgtatga tctaagtttt ttatgaagct
     2161 caataccaag tcggagtggt agttcgggat gcaagagaaa acctattgcc atgccgtcgc
     2221 ctgtaggcaa tattattttc ttatcatttg ttgacttcac atgtacatca catgatgtaa
     2281 tcattctatt caagttttca atttttgcaa tttgtttctt aactgataag gaaggatcgg
     2341 aaaga
//
LOCUS       DASPFX010000126        10924 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1818590, whole genome shotgun sequence.
ACCESSION   DASPFX010000126 DASPFX010000000
VERSION     DASPFX010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10924
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1818590"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..307
                     /locus_tag="VD694_02735"
     CDS             41..307
                     /locus_tag="VD694_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11651.1"
                     /translation="MKSKVGVRSVVAVQSFGEFSVGAVKWFAQACCGEIINPNNDADE
                     TTDPIKIRDNRKEVTKFFRDETPLRVEPLILDKPPWNIYFFTVK"
     gene            complement(819..1097)
                     /locus_tag="VD694_02740"
     CDS             complement(819..1097)
                     /locus_tag="VD694_02740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11652.1"
                     /translation="MDNSDIKTVGTSSILVFNGTGTIETKGVESPQVPIDIMIIDSAP
                     VTASIDMQTGDIKPSWIPKGGTISIMIDDNVFPGHFGNLPVYGVVRKG"
     gene            complement(1098..1445)
                     /locus_tag="VD694_02745"
     CDS             complement(1098..1445)
                     /locus_tag="VD694_02745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11653.1"
                     /translation="MLAALMIVTLSLSISVFTPAFAQNQNSPNTINQNSLNNTSTMSA
                     SSQKITINAKGPIASALKDNNGTWITWGNWELLNNASNPISMSSNPISFNASITKVKP
                     DNTESIKYKISDF"
     gene            complement(1570..3714)
                     /locus_tag="VD694_02750"
     CDS             complement(1570..3714)
                     /locus_tag="VD694_02750"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HXW11654.1"
                     /translation="MKFNLGAKKANFGSIVLILIPLTLSAFMHIWNPIGFPTLGQDEG
                     HYMRRAMNVLEGESPQEGLNPEELKFRGESRYDHPYFGQLFLAGIFSMIQYPDIVQPA
                     LGDRHSIEMLYTVPRILMGLLAVVDTFLVFKIAERLYNRNIGLIASVLFAVMPITWLL
                     RLILLDSILLPFLLASILFAVYTKDATIKNQYRKSILLTLFSGIFLGLAIFTKVPVFT
                     MIPLVSFLIYSNSNIEAKSEAKSSNNKRNWGRIGLWFIPVILISAIWPAYAISLGEFD
                     KWLDGVSHQATERGDAGKSLFVTTSIIFEIDPLFTVLSVFALIYAAVKRNVILLLWFI
                     PIMAFFFITGFVSQFHLSPIFPAYCIAIGLLIVDLSKKILMKKVKLQRVFPLAALSLI
                     AIYGLAMSVMIITTNVGAFHFDSATLVSNYAKDNKDDLTIITGPYFSWVFKHVFDIDR
                     VFEKHRPLEQSDMSDKIIMMSNFKKDEFKLFLTNAEKRVLGFGNVDENNVTRYSKLSN
                     IIDSDNDTKWISNDMNSWILIDLGSEKRVCKVKVNWFTSYEQPRNFTLSVSPDGDGFA
                     HAFSGNIPTSVSSEKIYNLSNNPVSRFIRINYDENIVGSYLTIKNINAFTRTADNQTG
                     FSCEKKLPLKTVADSTTNDPSNRYEHIIPPSLPIFKFLNNSTIVGSFVGEKVKYDTSK
                     YPYSNLDFNSGGGRVDIKSNFNSSGESAINEN"
     gene            complement(4032..6119)
                     /locus_tag="VD694_02755"
     CDS             complement(4032..6119)
                     /locus_tag="VD694_02755"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HXW11655.1"
                     /translation="MTDSNHFVLNLTFTKIVSNKTIFPLIIPLILSGFIHVWNPIGFP
                     PIGADEGVYMRRSLHILAGLGPQELKIGYYDHPYFGQLFLAGIFSMIQYPDIVQPALG
                     DRHSIEMLYTVPRILMGLLAVVDTFLVYKICERRYNRNVALISSILFAVMPITWLLRL
                     ILLDVILLPFLLASILFAVYTKDATIKNQYRKNILLTLFSGIFLGLAIFTKASAFTMV
                     PLVGLIIFTNRGSMRWKRLWLWIIPILLIPSIWPAYAIFLGDFDKWADGVVHQATERD
                     RDAFGTLNIFFKIDPVLLVFGFASIGFAAVVKKDFIPIIWVTPLLSFFYLSNFSSLFH
                     YVPLLPAFCIAAGIFVDYLSNKINIIRKAKEEDISSSNQNFIKDLKKINIFNSLLKRP
                     SITIVLGLGIFGTVISFMLVTTNTAAFQFDAMSYVAQRVSNNSNVTIISASQYSWIFE
                     YVFGMENAFGVKEQRKVPTENAIMMIDEDFKNYIADSDEDIKTSEDLNTTANAMDDDL
                     DTVWLNPNPISWILIDLGSEKNICGAKISGFMENEESPGITISISDNGRSFEEVYSGN
                     MYTSSNIFNKYDISDVAARYLKINLLGRTEISEIDVYGNTGKVPDAFNDSCKNLQVVN
                     FSSPISATDIFHAFNTHRSGILYKETLSTLYNVYPQLAKFVGSAEKYDIGKYPYTSMG
                     YYRSGSSIEIRAN"
     gene            6284..7606
                     /locus_tag="VD694_02760"
     CDS             6284..7606
                     /locus_tag="VD694_02760"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW11656.1"
                     /translation="MLFWVLLILSISLIPFSYLLYIGPDSFGLEDADPVTKEPIVKDN
                     NLRIEVIAQGLSIPTTMAFLGPDNILVLEKNNGTVRNIVNGVLVPQPLLDVHVASDNE
                     RGMVGIAIPNKQVGNNSTYVFLYYTEARIQDGEDDCPRPSYCNEWNEPLGNRLYRYEL
                     VNNKLVNPKLLLNLPLSPGSVHIGGAMTIGPDGYIYLPVGDMSLPETLVLNSGGRFPI
                     NGSGGILRIPQNGSLIKTSPILNNSYPLNLYYAYGIRNSFGIDFDPITGKLWDTENGP
                     GFGDEINLVEPGFNSGWKIVQGVWIARDYLGGEMTLEEPNSLVTFNGRGKYSFPEFTW
                     SRAVAPTAIKFFESNKFGKEYENDLFVATLIPNGDIYHFDLSNNRTELSLNRSLGDGI
                     VNSLEEAEPVIFGKQFGGISDLEVGPDGNLYVLSFAQGKLYRISPEKS"
     gene            7773..8495
                     /locus_tag="VD694_02765"
     CDS             7773..8495
                     /locus_tag="VD694_02765"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HXW11657.1"
                     /translation="METKHYHRLTAIIVVVLISISVLCSSIFQPTSAQLFGQNIGLSN
                     SKSSEPEISAYGNNVYIVWRDETTGNGDIYFRASDDSGDHFRNIKNLGTTKESSSEPR
                     ISSVGNNIYVAWRDETTGDGNIYFRRSTNYGNIFDEIEKLSNVNASSSELQMSTYQNN
                     LYVIWTQSTFNNMKIFFDSSRNLGSDFYNSVDLSRNLTSSYYPRLEVSHGNIYVVWRD
                     GNNIDNTHIYFKRISEEYRPNT"
     gene            complement(8544..10145)
                     /locus_tag="VD694_02770"
     CDS             complement(8544..10145)
                     /locus_tag="VD694_02770"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HXW11658.1"
                     /translation="MISRLLLLWILALSFFVHLWNVSGFPAIHPDEGTYMGRAMHVLN
                     GLGPQDELSKFDHTQVSNSSYDHPYLGPVFLAFVFKTIGYPDVLRPVDDIHSIEMLYM
                     VPRILMGLLAVVDTFLVYKICEQRYSRNVAIIASVLFAVMPMSWLLRRIVLDSILLPF
                     LLSSVLFALYAKHAVIKNQYKKSILLILFSGIFMGLAIFTKAPAFTMIPLMVFLLYSN
                     SNVNAKSDVNNSSNKKRGWRSIGLWFIPIVLIPAIWPAYAIYLGQFNEWLDGIYFQGA
                     QRYQEQGLTIFNMINIFIRDDPLLLAIGFAGFGLSVIKRDPFPLLWVIPYLIFVYSVG
                     WGNHFHWIPVLPVICIASALFLDGIRKKVITMKTSISRKLSLIMISAIIIFGFTSTML
                     VITTNISSSQYGASAFTASELQDENQNKDNITVISGPVFSWLFKYVYEKEHILSHVRD
                     SSTPINTNKIILIRDSTYRSILSGENENKTQIALLSALQNSSYTAAKFRDDTIFYDFK
                     KYPYAIIRDAQAGSRRSGIDINLNY"
BASE COUNT         3529 a         1962 c         1967 g         3466 t
ORIGIN      
        1 gatctgataa agcaggccgc taggttcagg cgatatacgg ttgaaatcta aagtgggcgt
       61 taggtcagta gttgcagtac agtcatttgg agagttcagt gttggtgctg ttaaatggtt
      121 tgcccaagct tgctgtggag aaattattaa tcctaataat gatgctgatg agactacaga
      181 tcctatcaaa ataagagata atagaaagga agtgacaaaa ttttttcgag atgagactcc
      241 tcttcgtgtt gaaccactca ttttagataa acctccatgg aatatttact tctttacagt
      301 caaataagat acaatgtttt actatatttc taataaaatc gcaagaactt gatgaaaact
      361 ccattgccat attcaaactt ctgctcctta tctcgctgcg ctcacctaac gtatatccta
      421 aacttaataa taattccctc atgcgatccg catcttccag ctagtcttat catattgtcc
      481 catatttaag aattctagat aatttttcag tatttttaga atttctaatt tctaatttaa
      541 ttgcgactaa aaagttggaa atacatgaat tatgggatag agcataaaat aacagatgta
      601 ttgttcgcat gcatatgatg cagatttgtt tatgaaaatg gtgttatgga tagcttgcga
      661 aattcaagtc agtgagtttg atagtatcga cttctcatct gatatggtat agcagtatta
      721 gcaacaggca aatcttaact gcctataaat gcatactcat tagaactatt tagttgatgc
      781 tcaagcgaaa ttaatcagct aaccgtcctt aagcgagttt acccttttct tacaacgccg
      841 tatacgggta agtttccaaa gtgaccggga aatacattat cgtcaatcat tatacttatc
      901 gttcctcctt taggtatcca tgatggtttt atatcaccag tctgcatatc aattgatgcg
      961 gtaacgggag cactgtcgat gatcattata tctattggca cttgtggaga ttctactccc
     1021 ttcgtctcta ttgttcctgt accattaaac accaaaatcg aagatgttcc aactgttttg
     1081 atatctgaat tatccaatta gaagtcagag attttatatt taatgctttc cgtgttatcg
     1141 ggcttgacct ttgtaattga ggcattgaaa cttattggat ttgaactcat acttatagga
     1201 ttagaggcat tatttagcag ttcccaatta ccccatgtta tccaagtgcc attgttatcc
     1261 tttaacgctg aggcaattgg gcctttggca ttgatagtta ttttctgaga gcttgcagac
     1321 atggtactag tattattcaa actattttga ttgatggtat ttggtgaatt ttgattttga
     1381 gcaaaagctg gtgtgaaaac agaaatgcta agtgataatg ttacaatcat aagagcagcc
     1441 aacacaatca tctgacttgg aagtatcatt ctaaatccga gcatcatcag tatgacataa
     1501 gatcactagt taaaaaatgt ttaaagttcg aatgtatgcc acaaactctt tctattaata
     1561 tctattcact taattttcat taatagccga ttcccctgat gaattaaagt tcgatttgat
     1621 gtcaactctt ccaccgccgc tattaaagtc caaattacta tatgggtatt tactagtatc
     1681 atattttacc ttctcgccta caaatgatcc tacaatagtc gagttattga ggaacttgaa
     1741 gataggcaat gaaggtggga tgatatgttc atatctattt gatggatcat tagtagtgct
     1801 atctgccact gtcttaagtg gtagtttttt ctcgcaggag aatcctgttt ggttgtctgc
     1861 cgtcctggtg aaagcattga tgttttttat ggtaagatag ctgcctacaa tattttcgtc
     1921 ataattaatt cttatgaacc tactaactgg gttattggag aggttataga ttttctcgct
     1981 tgagaccgat gtaggaatat ttccggaaaa cgcgtgtgca aacccatctc catcaggtga
     2041 aacagataat gtaaagttac gaggctgctc atagcttgta aaccaattta ctttgacttt
     2101 acaaactctt ttttccgatc ctaaatctat cagaatccat gaattcatgt cattgcttat
     2161 ccattttgta tcattatcgc tgtctatgat attggataat ttactatacc tagtcacatt
     2221 attttcatct acgttgccaa aacctagtac ccttttttca gcatttgtta ggaataattt
     2281 gaattcatct ttcttgaaat tagacatcat gataatttta tcgctcatgt cactttgctc
     2341 cagcggccta tgtttttcaa aaacgcggtc aatatcaaaa acatgtttga atacccatga
     2401 aaaataaggg cctgtaatta tcgttaaatc gtccttattg tcttttgcat agttactaac
     2461 taaggtagct gaatcaaaat gaaaagcgcc tacatttgta gttattatca taacgctcat
     2521 tgctagtcca tatattgcaa ttaatgaaag tgcggctagt ggaaacaccc tttggagttt
     2581 aacttttttc attagtattt ttttagacaa atcgacaatt agcaacccta tagcgataca
     2641 atatgctggg aaaataggac taaggtgaaa ttgcgacacg aaacctgtga taaagaagaa
     2701 ggccataatt gggataaacc atagaagtag tatgacattt ctttttactg ctgcgtaaat
     2761 caatgcaaat actgacaaca ccgtaaaaag tggatctatt tcaaaaatga ttgatgttgt
     2821 cacaaacaat gattttcctg catctcctct ttcagttgct tggtgtgata cgccatcaag
     2881 ccacttgtca aattctccta gggatatcgc ataagcaggc caaatagcag atatcaggat
     2941 aactggaata aaccacagcc caattctgcc ccagttcctt ttattattac tacttttagc
     3001 ttcagattta gcctcaatgt tactattact gtatattaga aatgagacta gaggaatcat
     3061 tgtaaacact ggtaccttcg taaagatagc tagacccaag aatattcctg aaaacaatgt
     3121 taacaggata cttttcctat attgattttt aattgtagca tctttagtat atactgcaaa
     3181 tagtatcgat gccagcagaa atggaagaag gatagaatct aacaatatca acctaagtaa
     3241 ccaagttatc ggcattactg caaataagac tgaagcgatt aatccgatat ttctattgta
     3301 taagcgttct gcaatcttaa acacaagaaa tgtgtcaacg acggcaagta agcccattaa
     3361 tattctcggg actgtgtata acatttcaat agaatgtcta tctccaagcg ccggttgaac
     3421 gatatcagga tactgtatca tgctaaagat tcctgcaagg aagagctgac caaaatacgg
     3481 atgatcgtaa cggctttctc ctctaaattt aagctcttca ggattcaagc cctcttgagg
     3541 actctcacct tccaatacat tcatagccct cctcatatag tgcccttcat cttgtcccag
     3601 agtaggaaac cctataggat tccatatgtg cataaaagcc gataaagtca agggaataag
     3661 aattagaaca atcgatccaa agttagcttt tttcgcccca agattgaatt tcaatactca
     3721 gtttgagtaa atgagtacgt gattctatat aaatttatta gaaaagccta tttcattaac
     3781 cctttccctt aaagagtcca tttgaaatga aacgttatga ccattcattt gattcatttc
     3841 atatgcaatt tgatctaaac aggacaaaga tcgatatgga aattaaacgt ttatgatatt
     3901 atcttgaagc ggtcgttctc tccaagagca atactcaaaa tcatgattca acgagtgtat
     3961 gcacagaaat tcagttgtaa aaacgactaa ttattcaact ttattctaaa acctatcagt
     4021 catcactagt tttagtttgc tcggatttcg atactagatc cgcttcggta atatcccata
     4081 cttgtatatg gatacttacc gatatcgtac ttttcggcac tacccacaaa ttttgccaac
     4141 tgcggataaa cattgtacaa cgtactcagg gtttctttat ataatattcc acttctatgg
     4201 gtattaaaag catgaaatat atcagtggca gatatcgggc ttgaaaagtt gactacttgc
     4261 aagtttttgc atgagtcatt aaatgcatct ggtactttgc cagtattacc ataaacatct
     4321 atttctgaaa tttctgttct acccagtaaa ttgattttta aatatcttgc agcaacatcg
     4381 ctaatgtcat acttgttgaa tatgttggat gaagtataca tatttcctga atagacctct
     4441 tcaaaacttc ttccgttatc tgaaatagat atcgtaattc ctggcgattc ttcgttctcc
     4501 atgaacccgc tgatttttgc tccacaaatg ttcttctctg aacccaagtc tattaaaatc
     4561 catgagattg gatttggatt taaccaaacc gtatcaagat catcatccat tgcattagct
     4621 gtagtattca aatcctcgct agtttttatg tcttcatcgc tgtcagctat gtaattttta
     4681 aagtcctcgt cgatcatcat aattgcgttc tcggttggta ctttccgttg ttccttgaca
     4741 ccaaatgcgt tttccatgcc aaatacgtac tcaaagatcc aagaatattg ggaggctgag
     4801 ataatagtta cattgctatt attagataca cgctgagcaa cataactcat ggcgtcaaat
     4861 tgaaaggcag ccgtatttgt cgttaccaac atgaaggata tcacagtccc aaaaatgcct
     4921 aatcctaata ctattgtgat ggatggtcgt ttaagcaaag aattaaagat attaatcttt
     4981 ttgaggtcct taatgaagtt ttgattcgat gaagagatgt cttcttcttt agccttcctg
     5041 atgatattga ttttgttcga taaataatca acaaagatgc ctgctgcaat acaaaaagcg
     5101 ggcaataatg ggacataatg aaacaatgaa gaaaagttcg ataggtaaaa aaatgatagc
     5161 aaaggcgtga cccaaataat aggaataaaa tcttttttta ccactgctgc aaagccaatc
     5221 gaggcaaaac caaataccaa tagcactgga tcaatcttga agaatatatt taaggtccca
     5281 aatgcgtcac ggtctcgttc ggtcgcttga tgtactacac catccgccca tttgtcaaag
     5341 tctccaagaa atatggcata cgcaggccaa attgatggta ttagtagaat aggtataatc
     5401 catagccaaa gtcttttcca tctcatacta cctctattgg taaagatgat aagccctaca
     5461 agtggaacca tcgtaaaggc agacgccttt gtaaagatag cgagccccaa gaatattcct
     5521 gaaaacaatg ttaacaggat atttttccta tattgatttt taattgtagc atctttagta
     5581 tatactgcaa atagtatcga tgccagtaga aatggaagaa ggatgacatc taacaatatc
     5641 aacctaagta accaagttat cggcattact gcaaataaga ttgaagaaat taatgccaca
     5701 tttctgttat atctccgttc gcaaatttta tagacaagaa aagtatcaac gacagcaagc
     5761 aaacccatta aaattctcgg gactgtgtat aacatttcaa tagaatgtct atctccaagc
     5821 gccggttgaa cgatatcagg atactgtatc atgctaaaga ttcctgcaag gaagagctga
     5881 ccaaaatagg gatgatcgta atatcctatc tttaactcct gagggcctaa acccgccaat
     5941 atgtgaagag atcgtcgcat gtacactccc tcatcagcgc ctataggggg aaaacctatc
     6001 ggattccata cgtggataaa tcctgacaat atcaagggaa tgattaaagg aaatatggtt
     6061 ttattactaa caatctttgt aaaagtaagg ttcagaacaa aatgattaga atctgtcatt
     6121 atataagtct taataaggtt gggcattaag tgagtgaact tataaaaaaa atcaaaagtt
     6181 agatcgtatc tagtagtaac taaacgatag tgtatattgt aaatgaaatt taattgccag
     6241 aactagatca agaattatat taaacagata aagaaaatat ttaatgcttt tttgggtact
     6301 ccttatactg tctatatcat tgattccttt ttcttatctc ttatatattg gtcccgattc
     6361 tttcggtctg gaagacgcgg accctgtaac taaagagccc atagttaaag ataataattt
     6421 acgcatcgag gtcatagcac agggactgag cattcctacg actatggctt ttttgggccc
     6481 tgacaatatt cttgttctcg aaaaaaataa tggaacagta agaaatattg taaatggggt
     6541 tttagttcca caacctctac ttgacgtaca cgtagcctcg gataacgaaa gagggatggt
     6601 aggaattgct attccaaata aacaagttgg caataattct acctatgttt tcttatacta
     6661 tactgaagcg agaatacaag acggtgaaga tgattgtcct agaccttctt attgcaatga
     6721 atggaatgaa ccgcttggga accgtctcta cagatacgag ctcgtaaaca ataaactggt
     6781 gaaccctaaa ttgcttctta atttaccctt atcaccagga tctgtacaca taggcggcgc
     6841 tatgacgatt ggaccggatg ggtatattta cctaccagtt ggtgacatga gtcttccgga
     6901 aactttggtt ctaaattcgg gcggacgttt tccaatcaat ggaagcggag gaatattaag
     6961 aattcctcaa aatggatctc ttattaaaac tagtcctatt ctaaataatt cttatccatt
     7021 aaatctttac tatgcatatg gtataagaaa cagttttgga attgattttg atcctattac
     7081 tggaaagcta tgggatacag aaaatggtcc tggttttggt gatgaaatca atcttgttga
     7141 gcctggcttc aatagcgggt ggaaaatagt acaaggcgta tggatagcca gagactatct
     7201 tggaggggag atgacattag aggagcctaa cagcctagtg acttttaacg gaagaggcaa
     7261 atatagcttt cctgaattta catggagtcg cgccgtagct ccgactgcta tcaagttttt
     7321 cgaatctaat aaatttggca aagaatatga aaatgacctc ttcgtagcaa ccttgattcc
     7381 taatggagac atatatcatt ttgacctaag caataacaga acagaattgt cactaaatag
     7441 atcactggga gatgggatag taaatagttt agaagaggct gaaccagtca tttttggaaa
     7501 gcaatttggt ggaattagtg accttgaagt tggaccagat ggcaatttgt atgtactctc
     7561 atttgcacaa ggtaaattat acagaatttc acccgaaaaa tcctaaatgt tatttggaat
     7621 tattataggc gactgaaatc ggaaatttcg atattacttg tcttttttat tttaacgtct
     7681 acaggagccc actttttaat ggatttgaat tgggtatata ctttaactaa tggaaataca
     7741 tttattaaat tacataagct cctcattaat acttggaaac taagcactat catagattaa
     7801 ctgccatcat cgttgtcgtc ttgatatcaa tatcagtact ttgctcaagt atatttcaac
     7861 ctacttctgc acaacttttc ggtcagaata ttggcttaag taattccaag tcttctgagc
     7921 cagaaatctc tgcatatggt aacaatgtat atattgtatg gagggatgaa acgactggga
     7981 atggggatat atattttaga gctagtgatg attcagggga tcattttaga aacattaaaa
     8041 atctaggcac aactaaggaa agctcatctg aaccacggat atcttccgtt ggtaacaata
     8101 tatatgttgc atggcgtgat gaaaccactg gcgatgggaa tatctatttt agaaggagta
     8161 ctaattatgg taacattttt gatgagatag aaaagctcag caatgttaat gcaagctctt
     8221 cggaactaca aatgtccact tatcagaata acctttacgt tatatggacg caaagtactt
     8281 ttaataatat gaaaatattc tttgattcaa gtaggaattt gggatctgat ttttataatt
     8341 cagtcgatct cagtagaaac ctcacatcgt cttattatcc aagactagaa gtatcccacg
     8401 gcaatatcta tgtagtatgg agagacggca acaatataga taatactcat atctacttta
     8461 agcgcattag tgaagagtat aggccaaata cttgaagtca tttactatgt ttagagatca
     8521 tagttagtaa accatgccaa tggtcagtaa ttaagattaa tatcaattcc gctacgtctt
     8581 gaacctgctt gagcatctct tattatcgcg taaggatact ttttaaaatc atagaatatt
     8641 gtgtcgtctc ggaactttgc tgcggtatat gagctgtttt gtaaagcgct taagagagca
     8701 atttgtgttt tattttcgtt ttctcctgag agtattgacc tatacgtgga atctctaatc
     8761 aatatgattt tattggtatt gattggcgtt gatgaatcac ggacatgaga aagtatatgt
     8821 tccttctcat agacatattt gaataaccat gaaaaaaccg gtcctgaaat tactgttata
     8881 ttgtctttat tctgattctc gtcttgtaat tcggaagcgg tgaaggcaga agccccgtac
     8941 tgagatgaag agatatttgt cgttataacc aacatagtac ttgtaaatcc aaatattata
     9001 atggcagaga tcataatcag ggatagtttt ctggaaattg atgttttcat tgtaatgact
     9061 tttttacgta taccatctag aaagagggct gaggcaatgc atatgaccgg cagaacagga
     9121 atccaatgaa aatggtttcc ccaaccaaca gaataaacga aaatcaaata agggattacc
     9181 cacaataagg gaaatggatc tcgttttatc actgaaagtc caaagccagc gaaaccaata
     9241 gctagaagta gtggatcgtc tctgataaat atatttatca tattaaatat cgttagacct
     9301 tgctcttggt acctctgtgc tccttgaaag tatattccat ccaaccactc attaaattgt
     9361 ccaagatata tagcatatgc aggccatata gcgggtatta gtacaatggg aataaaccac
     9421 aggccgatgc tgcgccagcc tcttttttta ttactactgt tattaacatc tgacttagca
     9481 ttaacgttac tattactgta taagagaaat accattagtg gtatcattgt aaaagcaggc
     9541 gcctttgtaa atattgccag tcccatgaat attcctgaaa acaaaatcaa cagtatgctt
     9601 tttttgtatt gattttttat tactgcatgt ttggcgtata atgcaaataa tactgacgat
     9661 aatagaaatg gaagcaggat ggaatccaat actattcttc tcaataacca gctcattggc
     9721 attactgcaa atagaacaga ggcaatgatc gccacgtttc gactatatct ttgctcgcat
     9781 atcttataga caagaaaagt gtcaacgaca gcaagtaggc ccattaggat ccttggaacc
     9841 atgtataaca tttcaataga atggatatca tctaccggac gaagaacatc cgggtaacca
     9901 attgttttga agacaaaggc taggaaaacg gggcctaagt acggatgatc atagctacta
     9961 ttcgagactt gagtatgatc gaatttgctt aactcatctt gcggaccaag accatttagt
    10021 acatgcatcg ctcttcccat gtatgtacct tcatcaggat gaattgcagg aaaaccactg
    10081 acattccaaa gatgaacaaa aaatgataat gctaatatcc agagaagaag caatctactg
    10141 atcaatggta gaagccttct gctcagtctc ttggtcagca taagacagat gatatttaaa
    10201 cacgttaaaa ggtttgtgaa gttggttgac tgcgtagatt agaattctac cacaagtaga
    10261 tgacagagtt tattcttctg tctatgtctt caacaattcg agtcacccat tgatttaaga
    10321 taactctagt taatgatttt aacaacacgc acctcaaatt gcacgcttgg actcttttgt
    10381 gttaaattcc taattcgcag acttaaacta agttttgtga cttagtcacc gttactaatt
    10441 ttaaatttta cccaaacctg ctaaaatcga tataatgatt gatattgaat aatgcaagaa
    10501 atatgactaa caaattcaat atgtaaaaat ttgaataatg caatttgaag aggatcacaa
    10561 atatctcaac atttctcgac taatctatct agatatatgc gctaaaggag tactcaaatt
    10621 gttatagcta tagctgtcgc taaatcaagt acaacgcatg attcgaatta aatagatata
    10681 tgggcttggt gggagttgga ccttccttat agaagggttc atctacagat accagacaat
    10741 ataaatgatt tctgtttact agtactcatg aaaagcccgt agtgaaactt gaatctatta
    10801 tagacatcta gaacttacca gataagggat atgatatttc aagatctata ttatgacttt
    10861 agacaaggaa ctgacttcgt ataacgattt actggatatt cttagattaa gcctgaaagg
    10921 ttac
//
LOCUS       DASPFX010000127         2435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1478637, whole genome shotgun sequence.
ACCESSION   DASPFX010000127 DASPFX010000000
VERSION     DASPFX010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1478637"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(386..778)
                     /locus_tag="VD694_02775"
     CDS             complement(386..778)
                     /locus_tag="VD694_02775"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11659.1"
                     /translation="MKSKTGIRKIIMVDDEPDVNITIKTVLEDTGLFLVDTFNNAESA
                     LSTFRPNFYDLALLDIRMPEMNGFQLCRKLGEIDKKIRICFLTATELLYYRDTDSDVI
                     NDLGTDCFVPKPINTIDLINKLKVILSK"
     gene            1012..1314
                     /locus_tag="VD694_02780"
     CDS             1012..1314
                     /locus_tag="VD694_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11660.1"
                     /translation="MEKNPTNNDSNVLIDSPELLSAQELQHFDNILRSIQKCSQEQNI
                     DRKIQILRFINSLLPNEIQLRIPSLITDDYVESALYNLEMACKGRIKLKNYFLLSL"
     gene            complement(2017..>2435)
                     /locus_tag="VD694_02785"
     CDS             complement(2017..>2435)
                     /locus_tag="VD694_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HXW11661.1"
                     /translation="SMTVGPDGRPKVREFGNAKSLFGQRGISAGTASVATIGKPLTAG
                     EIEPLSDITTTDKDVKVVVEMPGIDKKDIKISAYDSSVEISTTNTSERKYRSVIELPP
                     EANTETVKSTYNNGILEITFKKKEQTKPKGKQIKVE"
BASE COUNT          786 a          438 c          384 g          827 t
ORIGIN      
        1 tacaaaaacc gatttcaaat gatgacctag taaatgaaat taaaaagaga attagaatca
       61 aatgaagaaa taataggata gagacctccc tttccactct atggttgcta caggttgaaa
      121 atatatgaag taagccagca gtgtactgcc tcattacagc ttactaacaa aacctttaag
      181 cttagaagtg aggaaacaat gcaatctcat aacaagatat ggataacacc accgtttggt
      241 tagaaatagc caccttcaca ctggctttaa tttttgtatt aactgctagt tcagtaacaa
      301 cttcgatggc tataccagaa agcagacttg actaattata gtgcaaatac gatctttgct
      361 atatatctca agcacaatag ttatctcatt ttgatagtat aacctttaat ttatttatca
      421 agtctatggt gttaataggt ttgggaacga aacaatctgt tcctaaatcg ttaataacat
      481 ctgaatctgt gtctctatag taaagcaatt cagtagcagt caaaaaacat atccttattt
      541 tcttatctat ttctcctagt tttctgcata actgaaagcc attcatttca ggcatcctaa
      601 tatccagaag cgccaaatca taaaagttag gtctgaatgt agataacgct gattcagcat
      661 tgttgaatgt atcaactaga aaaaggccgg tatcttccaa aacagttttt attgtaatat
      721 taacgtctgg ctcatcgtca accatgataa tctttcttat cccagtcttt gacttcacgt
      781 ttgaagtgga tatcttaaat cattttgctg ttagatagag aaagtaaaaa gtttattggt
      841 taatggcttc ctttttaagc aaatgaaaat aatatagagg tccaaaagta gagaatcacc
      901 tacccatctt tagcaaaaaa gaaaagatct atacccagaa tggctactac tcaggtaaat
      961 tgctcacaat tcctaaaata tcgataatac acttgcaacg gtaaagtgct aatggaaaaa
     1021 aatcccacca ataatgattc aaatgtactg atagattctc cggaattgtt atcagcccag
     1081 gaattgcagc atttcgataa tatacttaga tccatacaga aatgcagtca ggaacaaaat
     1141 attgacagga aaatacagat tttgagattc ataaattcac ttcttcctaa tgaaatacaa
     1201 ctaagaatac cttcgctgat taccgacgat tatgttgaat ctgcattata taatttagag
     1261 atggcatgca aaggtcgaat taaattgaaa aactattttc ttttgtcatt gtgagatgac
     1321 aaactacgca ttgaatatca gtatttctga tttttcatgt ttactatgcc aacttgaatt
     1381 tgttcttgct ggtgttgtcg ttcttgggtt gacataatac agattaaacc aaaatctata
     1441 aggattctat taaatttgca catctttggt atagtctgtt gccgccccca tggttatatt
     1501 tcagcaatgt ccataaataa aaaggtaaaa tgttagtttc acccgaatgc tgccctttgt
     1561 ccttgtcctc gtgtggtgtg tagctaaatg atagttaatc gtatcttcct taagtcaagg
     1621 gaagacattt taaaactgta ttaaaaacta ctttgctata aagtaaagtt ggatttctaa
     1681 caaattcaaa taagtaatta agttcagagt cttttatgtt ctatagtctt tgaacgatgc
     1741 caaggcttta cccttacctt ctgtttacaa tcaggacatc ttaaaacctc tttcgagaac
     1801 tttaaattac acgtagcaca aaagttaaaa attctataat caagtctggg aggcataggc
     1861 ttagtttttt gtaaaagggt cactgttgca gaattactgc ctgaacttac tgtttgtatt
     1921 tcagaattcg tattaatcat ttttaatgta tttccctcct tctaccattg atgagtaata
     1981 aaataaataa tggagaagta ttttcatacc tctttcttat tctaccttga tctgttttcc
     2041 cttaggcttt gtttgctctt ttttcttaaa ggttatttca agaatgccat tgttataagt
     2101 agatttaact gtctcagtat ttgcttcagg tggtagctca atcacggacc tgtattttct
     2161 ctctgaagta ttagtagttg atatttcaac cgaactatca taagcactta ttttaatatc
     2221 cttcttatcg atgccaggca tttcaactac tactttgaca tctttatctg tggttgttat
     2281 atctgacaaa ggttctattt cgcctgcagt taatggctta ccaatagtag caacactagc
     2341 agtacctgct gatattcctc tttgtccaaa cagtgacttc gcattaccaa attctcttac
     2401 tttaggtcta ccgtcaggtc ccacagtcat tgaat
//
LOCUS       DASPFX010000128         5184 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1194068, whole genome shotgun sequence.
ACCESSION   DASPFX010000128 DASPFX010000000
VERSION     DASPFX010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5184
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194068"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2710
                     /locus_tag="VD694_02790"
     CDS             <1..2710
                     /locus_tag="VD694_02790"
                     /inference="COORDINATES: protein motif:HMM:NF017001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HXW11662.1"
                     /translation="QYRPYEQAKKFVHSLNLSGTEQWRDYCKSGNKPNDIPTGPAGVY
                     KQDWKGWWDWLGHEDSIWTIYKVKGLLKDLIKSKIIYQWDEAVLYSFLLRKGLLSLYD
                     GNRHAKFFRNLIEAAKTNAGRKIIEEYANSKSEIPPDLSNITNNSGTESKEIETASLS
                     DLSNFVENREALDYGDIKSVEQILEHTNMLESINVDEEAMRFYVNYSVDELWKHAFEN
                     EDEIRKKINSMDMNGNKYHDTVLQNFLSDYESSIKLKMPSGYSFPRRSKLMYPTLMQR
                     YVAFKMTKVPYFGNFSDTGTGKTLSAVLASRVTQSRLTIIVCPNDVVEQWKNNILDIF
                     PNSKVIIGKESFYIKYSVSEYQYAVLNYDKFSLDEAPNHILTLTKQNVDFVILDEVHF
                     TKIRDEEEISKRRRNLDGLMTAIRRRNPEVKVLGLSATPVVNNLREGRSLLEIITGKI
                     YEDVAVRPTIPNAVTVYEKLSTMSVRQVPDYSNVVKEHHDITVSAKRPEQLSIRLLKS
                     NPLAIEKYLTDARIPEIIKLIDGQTIIYTDYVEDIVQKLSDAVSAAGYSCGLYTGYDR
                     SGKHKFLQKQVQVLIASRPLSVGVDGLQTICNRLVINTLPWTNAQYKQLVGRLVRKGR
                     IKDEVNVYLVKASIGGYPYDELKWKRIEFKRTLADCAVDGRLPEKNLVTPQQAAMEAV
                     KWLERLERGEISTVVRRDLNVELTPVEIKKRVIKYGDFTRLNNKINNENSETTHIRMV
                     KDPKEWEEYHRQYREARKTWPIVPNEEIIKRFGQLSPRLIIGDFGCGEAKILEAFGDS
                     RVYSFDHVAVNNKVKACDMKSVPLPDEAIDIAVFSLSLMGRNWPKYITEAKRCLATNG
                     YLLIAETTKAVKGRLSNLKQVIEKQGFDIYNLEERGDFTFIEAREL"
     gene            complement(2740..3669)
                     /locus_tag="VD694_02795"
     CDS             complement(2740..3669)
                     /locus_tag="VD694_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11663.1"
                     /translation="MSSNERLVKASVVVFDLPFMLNLPDDQYAVYFDEDLTTVHLKRI
                     NSPVNMPGLPTGVQFAPNSVILGDRWGKFNYTRVRVVFHHLFFILPSPLFPNYLLSKA
                     IDIMNRLFSVCRGVKGDHYIRITRNDIFSYNVFYFDPSDKQKKESVSVPFGSNIMSTS
                     GASEPTNEQLTRIREILSTNAHLPLFQELIFDAWDYHFYGNYRAAVIEVGTAFEIFID
                     NLIWSKYLQSGMSEVKIQKILETGLMNLLRDHIKKITGHDFYSSQEFTNWERDAYQIR
                     NETVHKGKKISENESSKAITTVSNTIRYILPLT"
     gene            complement(3703..3864)
                     /locus_tag="VD694_02800"
     CDS             complement(3703..3864)
                     /locus_tag="VD694_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11664.1"
                     /translation="MTNTNMVSTMKIGEDTKKSLLKIGAEHTMKDGKERSLEDIVKLL
                     IEEHKIKQK"
     gene            3944..4261
                     /locus_tag="VD694_02805"
     CDS             3944..4261
                     /locus_tag="VD694_02805"
                     /inference="COORDINATES: protein motif:HMM:NF016798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUN14 domain-containing protein"
                     /protein_id="HXW11665.1"
                     /translation="MLEILVPTITSIGGGFISGILIGYFLKKIIKILMFLAGGIVALL
                     LYLQQQGIISMNIEKLENSLTFIVSSFASPFGNITYINDTNLGIPIVGGLSAGLVLGF
                     VKG"
     gene            4270..4968
                     /locus_tag="VD694_02810"
     CDS             4270..4968
                     /locus_tag="VD694_02810"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW11666.1"
                     /translation="MTNSIKLALKSILTKSFSNRSFNFEQILGHNDIKNIFAKSILSK
                     RPVHILLLGKPGSAKTMFLTQIMRHYKNSYFVVGSNTTKAGLVNELFERRPKFLLIDE
                     LEKMSATDQTSLLHLMETGIISETKINKTRQIEVTSWVFATANSCQKIVEPLLSRFVV
                     LKMPEYTFDEFSEIAVTRLRKENIEDSTARFIAEKVWNELASRDIRDVIKVARLANTP
                     HEVSSVANMIKKCR"
BASE COUNT         1774 a          866 c          983 g         1561 t
ORIGIN      
        1 acagtatcgg ccatatgaac aggcaaagaa atttgttcat tcacttaatt tgagtggtac
       61 agagcaatgg cgagattatt gtaaatctgg aaataaacca aacgatatac caacaggccc
      121 tgctggggta tacaagcagg attggaaagg atggtgggac tggcttggac atgaagatag
      181 tatatggact atatacaaag taaaaggatt gttaaaggat ttaatcaaaa gcaagataat
      241 atatcaatgg gatgaagctg ttctctattc ctttttactt agaaagggac tattaagtct
      301 atacgatggc aatagacatg cgaaattttt cagaaatttg attgaagctg cgaagacaaa
      361 tgcaggaaga aagataattg aggagtacgc aaattctaaa tcagaaattc cgcctgactt
      421 aagcaatata acaaacaatt ctggaactga atccaaagag attgagacag catctctatc
      481 agacctttcc aactttgtcg aaaatagaga agcattagac tatggtgata ttaaatcggt
      541 ggaacaaata cttgaacaca ctaacatgct cgagtcaatt aacgtagacg aagaggcgat
      601 gcgattttat gtgaactatt ctgttgatga gctatggaaa catgcctttg aaaatgagga
      661 tgaaataaga aaaaaaatca actccatgga catgaacgga aacaagtatc atgatactgt
      721 tcttcagaac ttcttgtctg attacgaatc cagtataaaa ctaaaaatgc cttctggtta
      781 ctcttttcct cgtcgttcaa agttaatgta tcctacgtta atgcagcgct atgttgcatt
      841 taaaatgaca aaggttccat attttggtaa tttttcagac actggtactg gaaaaactct
      901 ctctgcagta cttgcaagta gggtgactca aagtagatta acaattattg tttgtcccaa
      961 tgatgttgta gaacaatgga aaaataatat cttagatatt ttcccgaact ctaaagttat
     1021 aatagggaaa gagtcttttt acattaaata ttctgtatct gagtatcaat atgcagttct
     1081 taactatgac aaatttagcc ttgatgaagc tccgaatcac atattaacac ttacaaaaca
     1141 aaatgtagat tttgttatct tagatgaggt gcattttact aaaattcgag acgaggaaga
     1201 gataagcaaa cgacgcagga atctggacgg tcttatgacc gcaatccgta gaagaaatcc
     1261 agaagtaaaa gtcttaggac tctctgccac gcccgtggta aataacttaa gggagggaag
     1321 gtcattactt gaaataatta caggaaaaat ctatgaagac gttgcggtga ggccgactat
     1381 tcccaacgca gtaacagtct atgaaaaact atcaacaatg tctgttaggc aagtacctga
     1441 ttattctaac gttgtgaaag aacatcatga tattactgta agtgcaaaga ggcctgagca
     1501 gttatcaatc cgtctactta agagcaatcc ccttgcgatt gaaaaatatt tgaccgatgc
     1561 acgtattccc gaaattatta aactcattga tggtcaaacc atcatttata cggattatgt
     1621 ggaagatata gtacaaaagt tatccgacgc tgtcagcgca gcagggtatt cttgtggatt
     1681 atatacagga tatgaccgtt caggcaaaca taaattccta cagaagcaag tgcaagtcct
     1741 tattgcatct cgtcctctat ctgtaggtgt tgatggattg caaactatat gcaatagact
     1801 tgtgattaac acgctgccgt ggacgaatgc ccagtacaaa cagttggtgg gtaggcttgt
     1861 aagaaagggt cgcattaaag atgaagtaaa tgtctattta gtaaaggcaa gtataggtgg
     1921 ctatccctat gatgaactaa agtggaaacg cattgaattc aagcgtacgc tagcagactg
     1981 tgctgtcgac gggagattgc cagaaaaaaa tcttgttact ccacaacagg cagctatgga
     2041 agcagtcaaa tggttggaaa ggcttgagcg cggtgaaata tctactgttg taagaagaga
     2101 cctgaatgta gaattaactc ctgtagaaat taagaaacgg gtaataaaat atggtgactt
     2161 tactagatta aataacaaaa ttaataatga gaattctgaa actactcata ttaggatggt
     2221 aaaagacccc aaggaatggg aggaatacca tagacagtac agggaagctc gcaaaacttg
     2281 gcctatagtt ccgaatgagg aaatcataaa aagatttgga caattatcac cacgtcttat
     2341 aattggagac ttcggttgtg gtgaagcaaa aatattagaa gcatttggag atagtagagt
     2401 ttacagcttc gaccatgttg cagtaaataa taaagtaaag gcgtgtgata tgaaatcagt
     2461 tccgttacca gatgaagcta ttgatatcgc tgtattttct ttatctctaa tgggaagaaa
     2521 ctggcctaaa tatattactg aagcaaaaag atgtctggca actaatggtt atctcttaat
     2581 tgcagaaaca acaaaagcag taaaaggtag gttgtcaaat ctcaagcaag tgattgagaa
     2641 acaaggattt gatatttaca atcttgaaga aagaggagat tttactttta ttgaggctag
     2701 agaattgtag gggatgatgc cagtattcat atcgtaacac tatgtcaatg gaaggatata
     2761 ccttatggtg tttgataccg ttgtaatagc cttagatgat tcattttcag aaattttttt
     2821 ccctttatga acagtttcat ttcgaatttg gtatgcatct ctttcccaat tggtgaattc
     2881 ttgtgaggaa tagaaatcat gacctgttat cttctttatg tggtcacgaa gtaaattcat
     2941 caatcctgtt tcgagaattt tttgtatttt tacctcactc attccgctct gcagatattt
     3001 gctccagata agattatcta tgaatatttc aaaggctgta ccaacctcga taactgcagc
     3061 tctatagttg ccgtagaaat ggtaatccca agcatcaaat atcaattctt gaaataaagg
     3121 gagatgagca tttgtcgaaa gaatctccct tattctggtc agctgttcat ttgtaggttc
     3181 tgaagctcca ctagtagaca taatgttact tccaaatggg acagaaacac tttccttctt
     3241 ttgtttatcg ctagggtcaa aataaaaaac attataagaa aaaatatcat ttctagtaat
     3301 ccttatgtaa tggtcacctt tgacacctct acagaccgaa aataatctgt tcattatatc
     3361 aatagctttt gacagtaaat aattaggaaa taatggcgag ggtagaatga aaaaaagatg
     3421 atgaaagaca actcgcactc tcgtataatt aaatttgccc catctatcac ccaatatgac
     3481 agaatttggc gcaaattgaa cacccgtagg taaacctggc atgtttacag gactgttaat
     3541 cctcttaaga tgaaccgttg taaggtcttc atcgaaatat actgcgtact ggtcatctgg
     3601 taaatttaac atgaatggta ggtcaaatac aacaacagaa gcttttacga gcctttcatt
     3661 actactcatt aaagctctac tacgattggt tactataatt acttatttct gttttatttt
     3721 atgttcttca atcagtaact taacgatatc ctccagtgag cgttcttttc catccttcat
     3781 agtgtgttca gcacctattt ttaataggga tttctttgta tcttcgccta ttttcatcgt
     3841 agagaccatg ttagtattag tcattatact tacctcctta taatcataat ttattcttgg
     3901 tataatgggt atacttatat agtataccac gtatacttga ttgatgttgg aaattttagt
     3961 tcccacaatt acgtcaattg gtggaggctt catcagtggt atactgatag ggtattttct
     4021 aaaaaaaata attaaaatac taatgtttct tgcaggtggc atagttgctt tactattata
     4081 tcttcaacaa caaggaataa tttcaatgaa tattgaaaaa ctggaaaact cactgacatt
     4141 tattgtttca agcttcgcat ccccatttgg taacataact tacattaatg atacaaattt
     4201 aggaattccg atagtagggg gtctttcagc tggactagta ctaggttttg ttaaaggata
     4261 ggaagtgaaa tgaccaattc cataaaacta gctttaaagt caatattgac taaatcattc
     4321 tcaaataggt cctttaattt tgaacaaata ttgggacata acgatatcaa gaacatcttt
     4381 gctaagtcga tactctctaa aagaccagtt cacatacttt tgttaggtaa acctggttct
     4441 gctaaaacta tgttcctcac acagataatg agacattata aaaattcata ttttgtagtt
     4501 ggaagcaaca ctactaaagc cggtctagta aatgagttat ttgaaagaag gccaaaattt
     4561 ctattaattg atgaacttga aaaaatgagt gctacagacc agacatccct gttacattta
     4621 atggagactg gaataatttc tgaaacaaag attaacaaga caagacaaat tgaagtaact
     4681 tcatgggtat ttgcaactgc aaactcatgt caaaaaatag ttgaacctct gttatcaaga
     4741 tttgtagtat tgaaaatgcc agaatacacg tttgatgagt tttctgaaat agccgttact
     4801 agacttagaa aagagaatat tgaagactcg actgctcgat tcattgctga aaaggtttgg
     4861 aatgaacttg cttcaagaga catcagagac gtcattaaag tggctcggct ggccaatact
     4921 cctcacgaag tgtcatctgt ggctaatatg ataaaaaaat gtcgttagtt taaaatcaat
     4981 attcatataa gctatcccca tttacatcaa gaatttagtg tacaatcacg tgtaaacaac
     5041 cacctgaaaa cgattagtac ttttactcag ttatctggca aaatcgccga atagaaatgt
     5101 cctaactccc tctctaaatt cgggaatcaa gaaatacgca gcaattccag ctataagtgt
     5161 gatacctaaa atcttaacaa tggt
//
LOCUS       DASPFX010000129         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_697581, whole genome shotgun sequence.
ACCESSION   DASPFX010000129 DASPFX010000000
VERSION     DASPFX010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_697581"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VD694_02815"
     CDS             complement(<1..629)
                     /locus_tag="VD694_02815"
                     /inference="COORDINATES: protein motif:HMM:NF013465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HXW11667.1"
                     /translation="MSKLNFILIAAFFILYSIPTAGLSSITTDPASQDHIPQRKVKVV
                     ASFYPILEFVKKVGGDRVEVSSLIPQGMEPHDFDPTVQQVQNVESADMLVYNGGGLEG
                     PWIKKINAKFAVDSSQGLILPRINGTELTADDPHIWLDPILAKEQVKKIREGLIKVDP
                     RYTVYYNENAKEFMSELDSLDGIIKSELSDCEKRDFIAFHNAFSYFANR"
     gene            complement(768..1808)
                     /locus_tag="VD694_02820"
     CDS             complement(768..1808)
                     /locus_tag="VD694_02820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11668.1"
                     /translation="MQENNNNMKNKSKKNDIISEYQQAMNCLKEVLTRCLQMLKMNHY
                     KDINQSSIQYVENSLQEHITAFGNWIICLDAIADSCLANKHTLSQSETYDFLTVAVAT
                     NIEEKKRNKTIDDIIFKIYRDIMANYETSEYKLKIAYPKIIVDVVAILAKGLNLDGKK
                     VALHQVEFYYQRRKETAISSIVPKTITIPRSTSATAASIVTIEKKKDELYINEDSKEK
                     ITDNLSNLTGRTRKELELSLSKLQRIDIIRLWHLCENYSKLQRYCEIIHGSEERFKVE
                     LQKDLGRKLSHHQLQRAATSIKQAKMYIENVLDGKFQPHGSYGINHVKHNLEYGYQLI
                     GLIQSRRRPNKG"
BASE COUNT          598 a          391 c          372 g          769 t
ORIGIN      
        1 tatctgtttg caaaataact aaatgcatta tgaaacgcta taaagtctct cttttcacag
       61 tcggatagct cagattttat aattccatcc aaactgtcaa gctctgacat gaactcttta
      121 gcattttcat tatagtacac agtgtatctg ggatctacct ttattaatcc ttcacggatt
      181 tttttaactt gttctttcgc tagtatagga tctagccata tgtgaggatc atccgctgtc
      241 aactcagtgc cattaatgcg aggcaaaatt aagccttgac tactgtcaac tgcaaatttt
      301 gcattaatct tttttatcca aggtccctct aaacccccac cattataaac caacatgtct
      361 gcagattcta cattttgtac ttgttgcacg gtggggtcaa agtcatgagg ctccatacct
      421 tggggtatta aactcgaaac ttcgactctg tctcccccaa ctttcttgac aaattctaat
      481 attggataaa aagatgcgac aacttttacc ttgcgttgtg gaatatgatc ttgagaagca
      541 ggatcagtgg taatgctact cagccctgcg gtgggtattg aatatagaat aaaaaaagca
      601 gcaataagaa tgaaattaag tttactcata atgctggacg tcattattag ctatttatac
      661 gtatgttaat aattattaca taatcaatta taagggacta ataatgaata agcgtcatta
      721 gtcaacatat ggggtaaaca atcggacaaa atagatatgg tccttcatta acccttgtta
      781 ggacgtcttc tagactggat cagtcctatg agctgatagc catattccag attgtgtttg
      841 acatgattta tcccgtatga gccatggggc tgaaatttgc catccaaaac attctcaata
      901 tacattttgg cttgttttat agaggttgca gcacgttgaa gttgatgatg agaaagcttt
      961 cttcctaaat ccttctgaag ctccactttg aacctttcct ctgaaccatg tattatctca
     1021 caatatcttt gcaatttgct atagttttcg cataagtgcc ataatcttat gatgtctatt
     1081 ctctggagtt tgctgagtga taattctagt tcctttctgg ttcttccggt taaattacta
     1141 agattgtctg ttattttttc tttactatct tcattaatat aaagttcatc ctttttcttc
     1201 tctatagtga caatactagc ggcagtagca gatgtagacc ttgggatggt gatagtcttt
     1261 ggaactattg aagaaattgc agtctctttt cttctttgat aataaaattc tacttggtgt
     1321 agggccacct ttttaccgtc caaattcagg cccttggcaa gaatagctac tacgtcaacg
     1381 ataatttttg ggtaggctat ctttaattta tattctgagg tttcgtagtt cgccataata
     1441 tccctgtaga ttttgaagat tatgtcatct attgttttgt tccttttttt ctcttcaatg
     1501 ttcgttgcaa ccgctacggt aagaaagtca tatgtctctg actgggaaag tgtgtgttta
     1561 ttagctagac aggaatcagc tattgcatct aggcaaataa tccagtttcc aaaagccgtt
     1621 atatgctcct gaagagaatt ttcaacatac tgaatagagc tttgatttat atccttatag
     1681 tgattcattt ttaacatttg taggcaccta gttagaactt ccttgagaca attcattgcc
     1741 tgttgatatt ctgatatgat atcgtttttt ttactcttat ttttcatatt attattattc
     1801 tcctgcatag ttagatcgac accaatctat tggaatgtta gcacatagaa tccggcctta
     1861 atatcaacta ccgaataaag atatgtatcc taagattcct tttttttttt gaaagataat
     1921 tcgagaatag tcttatgagt aaaggaaggc tatgatggta actggtgtta tcatgttaaa
     1981 taggagtggc tgtttcaacg ttcctatgtt ccgtactagt acgcgattat gctaaaggca
     2041 acatcagtcc ttgaatgttc gttcctattc tgtttatgga ataatatctc cgctctatgt
     2101 ccagatagca attgttattg ttgcaatgat
//
LOCUS       DASPFX010000130         2004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1822593, whole genome shotgun sequence.
ACCESSION   DASPFX010000130 DASPFX010000000
VERSION     DASPFX010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1822593"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VD694_02825"
     CDS             <1..406
                     /locus_tag="VD694_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HXW11669.1"
                     /translation="NEIPPICKFQFMKGYVFRRNSPAVFGAEILVGKLRQKVSVISED
                     GKKIGVVHQIQNEGKNLDIADRGMQVALSIKGPTIGRQINEGDIFYTDLNSREARLLI
                     ERFPERLNEEEQEIFNLILSKKRKVDPAFGYL"
     gene            complement(426..764)
                     /gene="trxA"
                     /locus_tag="VD694_02830"
     CDS             complement(426..764)
                     /gene="trxA"
                     /locus_tag="VD694_02830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HXW11670.1"
                     /translation="MSSDSNKPTLVELSEKNFDEVIGGNKPVLVDFWATWCGPCQFML
                     PIFDKLAKKYEEKVVFGRLNVDDNQGVAMRFDVYAIPTFIVFMNGKLVEKAVGAVGEK
                     GLEGLLEKYQ"
     gene            complement(887..1315)
                     /locus_tag="VD694_02835"
     CDS             complement(887..1315)
                     /locus_tag="VD694_02835"
                     /inference="COORDINATES: protein motif:HMM:NF014058.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archease"
                     /protein_id="HXW11671.1"
                     /translation="MAGGYRYLEHVTDAYVEAYGDSMEEAFSYAAKGTINIMFELKDI
                     IGKNKFELEVEGHDYSELLFNWIDRIVLLIAIDNMVASNFDLKISKLESKYQLTGHAM
                     TESVDMSKHGYKTEIKGVTYHEMEILQESGLKKVRFLLDL"
     gene            1389..>2004
                     /locus_tag="VD694_02840"
     CDS             1389..>2004
                     /locus_tag="VD694_02840"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HXW11672.1"
                     /translation="MKLDLPRGMRDLQYEELRDISHLRDKFAETAQIFDFKQIEPSTL
                     ELLSTLEAKSGPSIIDETYSFTDKGGRNIALRFDLTIGLSRFVSMRRDLKLPAKLSSF
                     GGVWRYDEPQLGRYRYFHQWDIEIFGSPEVDADAEIIEFVSFFLKRLGIDFVIAVNHR
                     SILEEYLTRTLEISDNNTVNEMMRAIDKLAKKSTNQIVDEYKQKL"
BASE COUNT          643 a          366 c          350 g          645 t
ORIGIN      
        1 taatgaaatt ccgccaattt gtaaatttca gttcatgaaa ggttacgttt ttagaagaaa
       61 cagtcccgca gtatttgggg ccgaaatctt ggtcggcaaa ttgagacaaa aagtttcagt
      121 aattagtgaa gatggcaaga aaattggggt ggtgcaccaa attcaaaatg aaggaaaaaa
      181 cctggatatt gcagatagag gaatgcaggt agcgctttcc ataaaggggc caacaattgg
      241 tagacagata aacgaaggcg atatatttta tactgatctt aacagcagag aagcgcgatt
      301 actaattgaa agattccccg aaagattgaa tgaagaagag caagaaatat ttaatttaat
      361 tctatcaaaa aaacgtaaag tcgatcctgc ttttggatac ttgtaaatta aaaaataaaa
      421 taatattact gatacttttc tagtaagcct tctaatccct tctcgccaac tgccccaact
      481 gctttttcga ccaatttgcc attcataaat acaatgaatg taggaatcgc atatacatca
      541 aacctcatcg caacgccctg gttgtcatcc acattcagtc ttccaaaaac aactttttct
      601 tcatactttt tggcaagttt gtcaaatatt ggaagcatga attgacatgg tccacaccat
      661 gttgcccaaa aatctactag tacgggttta ttgcctccga ttacttcgtc gaagtttttt
      721 tcagacaatt caacaagcgt aggcttatta gaatcagaac tcatattgct acaactattc
      781 ctcttaattg atatttaaat cttgtaagtc aattccgtat tttctgaatt atgatttgaa
      841 aagtattcta aaaaacgtca ttgtaacttg ttgtctttat gttttgttat agatctagta
      901 agaaccttac ttttttcaaa ccactttctt gcaaaatttc catttcatgg tatgtaacac
      961 cctttatttc agttttatag ccatgttttg acatgtctac tgattctgtc attgcgtgcc
     1021 cagtcagttg atatttagat tcaagctttg atattttcag gtcaaagttt gacgccacca
     1081 tgttatctat tgcgataagt aaaactatcc tatctatcca gttgaatagc aattctgagt
     1141 aatcatgtcc ttctacctca agttcaaatt tatttttgcc tataatgtct tttagttcaa
     1201 acatgatgtt gatcgttcct ttggctgcat acgaaaacgc ttcttccata ctgtcaccgt
     1261 atgcctctac atatgcatct gtgacgtgtt caaggtaccg gtagcctcca gccaatagtc
     1321 agtgtttttc atctgcttta ttataactaa tcgcaaaatc taaatgatga catactatct
     1381 tcatcattgt gaagttagac cttccccgtg gaatgaggga cttgcaatac gaagaattaa
     1441 gggacatatc ccatcttaga gacaagtttg cagaaaccgc tcagatcttt gattttaaac
     1501 aaatagaacc ttccacgctt gaattactat ccactcttga ggccaagagc ggtccatcaa
     1561 taattgatga aacatatagt tttactgata aaggaggacg taatattgca ttacgttttg
     1621 atcttaccat aggactttca aggtttgttt ccatgcgtag agatctaaag ctcccagcca
     1681 aattatcatc atttggaggc gtctggaggt atgacgaacc acagttggga agatatagat
     1741 atttccatca atgggatatt gaaatattcg gatctccaga agtagatgct gatgcggaaa
     1801 ttattgaatt tgtttcattc tttttgaaaa gactgggaat tgattttgtt attgcagtaa
     1861 atcatagatc tattctagaa gaatacctga caagaactct tgaaatttca gataacaata
     1921 cagttaatga gatgatgagg gcaatagata aacttgccaa aaagagtacc aatcagatag
     1981 ttgacgaata caagcaaaaa cttg
//
LOCUS       DASPFX010000131         2275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1571418, whole genome shotgun sequence.
ACCESSION   DASPFX010000131 DASPFX010000000
VERSION     DASPFX010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1571418"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..163)
                     /locus_tag="VD694_02845"
     tRNA            complement(90..163)
                     /locus_tag="VD694_02845"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(127..129),aa:Pro,seq:tgg)
     gene            351..1247
                     /gene="map"
                     /locus_tag="VD694_02850"
     CDS             351..1247
                     /gene="map"
                     /locus_tag="VD694_02850"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II methionyl aminopeptidase"
                     /protein_id="HXW11673.1"
                     /translation="MDNFENYVKAGKIASEVREYARTQDHTGRTLSEICNDVENEILK
                     RGGEPAFPVNVSLNDIAAHYTAEPNDPTIVNNSDVLKIDVGVHIDGYIADTAVTVSFD
                     SKYQDLIDIAQRALDEAIGIARSNTRVSDIGRIIEKTITKYGCKPIQNLSGHSLERYT
                     IHAGKSIPNIWTIGHSFNLSVDNVYAIEPFVTTKDGQGIVYEGKIKNIFGIASRKRTK
                     DQKADEFLEYLWNKFKTLPFALRWMVNDYEEKEALSLLQTLIKKKNVHAYPILVEGSN
                     RIVVQAEHTIIPQESNTITITR"
     gene            1607..>2275
                     /locus_tag="VD694_02855"
     CDS             1607..>2275
                     /locus_tag="VD694_02855"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HXW11674.1"
                     /translation="MFESDISNLKRLGLVDVFGDDWTRTIYSVDASHFSLKPSIVNFP
                     SNEQDVQKICAYAHSHGISLTCRGAGTGLLGQSLSTGIVLDFTKKMNKILEIEDDYII
                     VQPGVVKAVIDKELAKRNKFIPPDPASSNYCTIGGMIANNSSGPHGLGYGSIINHVQR
                     VDLVYSNGSIGFADRRNHDERIDKMLKNVLSENIKIKDHYPNVSKNSSGYRLDAVFEN
                     SQVNP"
BASE COUNT          776 a          393 c          445 g          661 t
ORIGIN      
        1 tttaccagct aaagcttatt aggatatctg ctaccacctg tttggattct ctaaaagatg
       61 ccgactgacc atcgcaggtt gagtaaccgt gggatcggcc ggatttgaac cggcggcctc
      121 cagcgcccaa ggctggcatc ataccaagct agacgacggc cccaacttca tggtttagca
      181 aatgcgatac tccaagtaca attttaactt tgagataatc agtattagtc cattgaatct
      241 agtacttttc tccatctcac ttttcatgac atattacttg gcactttgga caactcagaa
      301 cgcttctgat atccatatct ctaaatatgt ttgactttga aatttagaag ttggataact
      361 ttgagaacta tgtcaaggct ggaaagatag cttccgaagt tagagaatat gctaggactc
      421 aagatcacac tggcagaacc cttagtgaaa tatgcaatga tgttgaaaat gagatattaa
      481 aaagaggtgg agagccggca tttccagtta acgtcagttt gaatgatatc gcggcacatt
      541 atactgccga gcctaacgat cctacaattg tcaataattc agatgttcta aaaatagacg
      601 taggtgtgca tattgatgga tatattgcag atacagcagt aactgttagt tttgattcaa
      661 aatatcaaga tttgattgac atagcacaaa gagcactgga cgaagcaata ggaattgccc
      721 gttctaacac tcgtgtttct gatataggta gaataattga aaaaacaata acaaagtacg
      781 gttgcaaacc gattcaaaat ctaagtggtc attcccttga gcgatacacc attcatgcag
      841 gtaaatcaat tccaaacatt tggactatcg gacattcatt caatttgtcc gtggataatg
      901 tttacgccat tgaaccattt gtgacaacaa aggatggtca agggattgta tacgaaggca
      961 aaataaagaa tatttttgga atcgcctcta gaaaaagaac taaggaccaa aaggctgatg
     1021 agttccttga atatttatgg aataaattca agactctacc atttgccttg agatggatgg
     1081 ttaacgacta tgaagaaaaa gaggcactct cattgttgca aaccctgata aagaaaaaga
     1141 acgttcatgc atatccaata ctagtggaag gttctaatag aattgttgtt caagcagaac
     1201 atacgattat acctcaagaa tccaatacca tcactataac tagataacaa ataacctatg
     1261 gacggcaaac gccaaaattg ttttagagat caagattaat cctaattaat atgtaaaaaa
     1321 gtaataaaag taatatatac aagcttggtc tagttccttg tatgaaagca aaaactgtgg
     1381 tttatggagc atattttgca ttaaaactct ggttttacag gaaattaaaa ggtaagaaat
     1441 caaagccaga aaaagaaatc tctatgtaac tactctaaat ttttgttaga cgccttgatg
     1501 aattagtgtc tgcttttgta ttttctatca tactcttgaa atttgttgtg cagtggtaaa
     1561 gaatccaaac tacttttaat cacgatcaag ttatatcaat ttactcttgt ttgaatcaga
     1621 tatttctaat cttaaaagac ttggacttgt agacgtattt ggcgatgatt ggacaaggac
     1681 aatttattca gtagacgcaa gtcatttttc gctcaaacct tcgatagtta acttcccgtc
     1741 aaatgagcag gacgttcaga aaatatgtgc ctatgctcat tctcacggca tttctctaac
     1801 ctgcagaggt gcgggtacag ggctattggg tcaatcgtta tcgacaggta ttgtattaga
     1861 ttttaccaag aaaatgaaca aaatcctgga aattgaagat gattacataa ttgttcaacc
     1921 aggtgttgta aaagcagtta ttgataagga acttgcaaaa aggaataagt ttatcccacc
     1981 agatcctgca agtagtaact actgtaccat tggtgggatg atagctaaca attcgagtgg
     2041 tccacatgga ctgggttatg gaagtattat caaccatgta caaagagttg atctagtcta
     2101 tagtaatggc tcgataggct ttgcagatcg cagaaaccac gatgaaagaa tcgacaaaat
     2161 gttaaagaat gttttgtctg agaatataaa aataaaagat cactatccaa atgtaagtaa
     2221 gaattcaagt ggatatcgac tggatgcagt ttttgagaat agtcaggtaa acccg
//
LOCUS       DASPFX010000132         5632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1419936, whole genome shotgun sequence.
ACCESSION   DASPFX010000132 DASPFX010000000
VERSION     DASPFX010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5632
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1419936"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..520
                     /locus_tag="VD694_02860"
     CDS             <1..520
                     /locus_tag="VD694_02860"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HXW11675.1"
                     /translation="FIIGSSLGGHIAIEFTIRNRKNVVKLILISPAGSLPKTFKGTKE
                     LREYIRIVRARSSMDVSRILSSVDNSMVSRSYADAIYKRLSLPGAKQGFISALRGSAT
                     APRYNNKLERIDTDMLLIWGREDRMIPLRFIRPFIEHGKSRIIILEKCGHRPHVENPK
                     LFNKIVKDFLIE"
     gene            740..2626
                     /locus_tag="VD694_02865"
     CDS             740..2626
                     /locus_tag="VD694_02865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HXW11676.1"
                     /translation="MLNSVYGFGVSQIGSLSEFNGFGFVQIKNNILPQYDGTIAQSII
                     NVKTEAGSTTDETKDDATNSITSTKTAPQSFGVKILSPTSGKEIPVGNLTIFGVSTDN
                     EKSDCTVLVDWNNEKPFQKAKAAGPYGDDDYSSWTFTYSSSYHAIESGLNDLTSKLEC
                     LENSKVTTKWHSINVTGVVTNEANPITATVLHDPLGILPQLRTLSTSPLTSSQNISSN
                     ESTLASSNLLTHVELSKKLMFPGESQNFTVKITDPVTSENIAGANVAVKIMQGNLTVN
                     EYNGSSDNLGEYSQSWNILSNTSSGIYDVVVSASADGYQSASLSGSFEVQRQLLVEAS
                     LLKRLVVPGDQQTVDVKVVDANTKEIVPGADVVAKIGQKKGYNGTSDAVGAFSHTWNI
                     TSDIPAGKYNVLVKASADGYQPASLKGSFEVQRQLLVEAGLSNDLVIPGDEQTIKVKV
                     VDANTNEIVTGANVVGKIGTKKFTASTDDNGVASYQWDTPSTSGGNDYNVVLDVTADG
                     YPKVTKATSFKMDKPQNLLEPPISNYEHNIIKVKGNEMSNNQEGSQNKLQECVNMISA
                     LDCSSGDVNDKPTLSPATDDKPNTNSEIDYNPLLSSNIMEDITPEENQEDNIGYDFLG
                     SITN"
     gene            complement(2710..3207)
                     /locus_tag="VD694_02870"
     CDS             complement(2710..3207)
                     /locus_tag="VD694_02870"
                     /inference="COORDINATES: protein motif:HMM:NF017936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HXW11677.1"
                     /translation="MNKNAKFWIKKLGLQKHPEGGYFTNTYVSDKKIDLPEYDGTRSA
                     CTAIYYLLTGNQFASFHTVSSDEIWHFYSGSSLTLHVINSNGEMEKILIGPSHDKGER
                     FQVIIKSGCWFAASINDKKSYSLVGCTVSPGFDYRDWKLGDRKKLLEQYPQYGKLIKK
                     YTTNN"
     gene            3589..3906
                     /locus_tag="VD694_02875"
     CDS             3589..3906
                     /locus_tag="VD694_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11678.1"
                     /translation="MVRALQILLLIFMLSIAGTLAQVNLIEAATEKNSTRDGTSAKNE
                     DVFALLQLEKDVAKHEGSLKDLHAGNKSPFDLLGEVKNDEKFKPESGSFLPEYDDTPE
                     DND"
     gene            4163..>5632
                     /locus_tag="VD694_02880"
     CDS             4163..>5632
                     /locus_tag="VD694_02880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11679.1"
                     /translation="MFNLRFRTLGYIIGFSAIFLILTSNLMINHQNFSTAYPIVNKVS
                     FDELGKFAIMPMKDTPRDFGPSSITTNPNNEEWKNRLCENTNQAGINIGIPFMCDPSN
                     NIGQNENTNQQNENTNQLGQDISDKVHEKIGNLKDKFDDSIFGNIESDNSQSNSVQSN
                     SKNDNNNGKGNNKNGNDDGNNEQENSEQQLFDKQGGGKAKSELDDDMEGNSGNHHKTN
                     NGNNDNNANNGNNQGNNGNNQGNNNDDGLGIAGLDLGLNIDKKLGKVDEKIDNLKNNL
                     GPSKQENKDNQKNNNDQGENDDTLRITGLVPNIQNIQANLDKQIEKLKDKFENEKDNQ
                     RLIDQRNEFDDDEDDDNKDSDGGDDGNAKDYDGYGFKGDDDNGNGNKHENGEENFNFA
                     AAGDFGCSTNTQNTIENMQSKDPEIVLTLGDHSYHSTADCWFDMMSPVKDKLMLTLGY
                     HDVEDGQAKMNQYMNSFALEKPFYSYDYNKVHFLVMSAKS"
BASE COUNT         2002 a          928 c         1042 g         1660 t
ORIGIN      
        1 tttcataata ggttcctctt tagggggtca tattgctata gaatttacaa ttcgaaatag
       61 gaaaaatgtt gtcaagctta ttctcatcag ccctgctggt tctctgccaa aaaccttcaa
      121 agggaccaaa gaattacgag agtatatccg catagtaagg gcaagatctt caatggatgt
      181 aagtagaata ttgagctctg ttgataactc tatggttagt cgttcatatg cagatgccat
      241 atacaaaaga ttatcgttac cgggtgcaaa acaaggattt atttctgcat tgagaggaag
      301 tgcgacggcg ccaagataca ataataaact tgagagaatc gacacagaca tgttacttat
      361 ttggggaagg gaagatagaa tgattccatt gagatttatt cgcccattta ttgaacatgg
      421 taaatccaga atcataattc tagagaaatg cggacacaga ccacacgtag aaaatccaaa
      481 attgtttaat aaaatagtaa aggatttctt gatcgagtaa tttgaatcta atttatgcaa
      541 caatctttca taagatgaat tgctacttgc actatgtgat tctttgagta aaaagaaatg
      601 tactcaatta aataaaattc atagtgttga ttctaagaga gaataggctg acaatactta
      661 taaaaattaa attagataag attttgtgaa ttattattta ataataatat tctttgtatc
      721 tactatcttc cttattccta tgcttaattc ggtctacgga tttggagttt cgcagatagg
      781 atctttaagt gaattcaatg gctttggttt tgttcaaata aagaataata ttctaccgca
      841 atatgatgga accatagcac aatcaattat taatgtgaaa acagaagcag gttcaacaac
      901 tgacgagaca aaagatgatg ccacaaattc gattacttca acaaaaactg ctccccaatc
      961 ttttggagta aaaatattgt caccaaccag tggcaaagaa atacctgttg ggaatttaac
     1021 tattttcgga gtttctacgg ataacgagaa atctgactgc acagtacttg tagattggaa
     1081 taatgaaaaa ccgttccaaa aggcaaaagc ggccggacca tacggagatg atgattactc
     1141 atcttggaca ttcacttact catcttcata ccacgctatt gaaagtggac taaatgatct
     1201 tacatccaaa ttagaatgtc tcgaaaattc taaagtaacc acaaagtggc atagtattaa
     1261 tgtaacagga gtagttacta atgaagcaaa tccaataacc gcaacagtat tacatgatcc
     1321 tcttggaata cttcctcagt tgagaacttt atctacaagt ccattgacta gtagtcagaa
     1381 catatcttcc aatgagtcaa ctcttgctag tagcaatcta ttgacccatg tagaattatc
     1441 aaaaaaactg atgtttccag gagaatccca aaactttacg gtaaaaatca cagatccagt
     1501 cacatcagaa aatatcgcag gagcgaatgt tgctgttaag attatgcagg gaaatttgac
     1561 ggtaaatgaa tacaacggat cttctgacaa tctaggagaa tattctcaat cctggaatat
     1621 tctatctaac acatcatctg gcatttacga tgtggtagtt tcagcttctg ctgatggtta
     1681 ccaatctgct tctttgtcag gaagttttga agtccaaaga cagttgctag ttgaagcaag
     1741 tctattgaag agacttgtcg tgcccggaga tcaacaaaca gtagatgtaa aggtagttga
     1801 tgctaatacg aaagaaattg ttccaggagc tgatgttgtg gccaaaatcg gtcaaaagaa
     1861 ggggtataat ggcacctctg atgcggttgg cgcattttct catacctgga atattacttc
     1921 tgatattccg gctggtaaat acaacgttct ggttaaagct tcagctgatg gttaccaacc
     1981 tgcttctttg aaaggaagtt ttgaagtcca aagacagttg ttagttgagg caggattatc
     2041 aaatgatctt gttatacctg gcgatgaaca aacgattaaa gttaaggtag tggatgccaa
     2101 tactaatgaa atagtaacag gtgcaaatgt tgtaggtaaa attgggacaa agaaatttac
     2161 cgcaagcact gatgataatg gtgtagcttc ctatcaatgg gatactccat ctactagtgg
     2221 tgggaatgat tacaatgtag tcttggatgt tacggcagat ggatatccaa aggttacgaa
     2281 agctacatca ttcaagatgg acaaaccaca aaatctattg gaaccaccaa ttagtaatta
     2341 tgagcacaat ataattaagg taaagggcaa cgaaatgagc aataatcaag aaggatctca
     2401 aaataaactc caagaatgtg tcaacatgat ttccgcgttg gattgcagta gcggcgatgt
     2461 taatgataaa ccaactctca gtccagcaac tgacgacaag ccaaatacaa attcagaaat
     2521 cgactataac ccccttctta gcagtaacat catggaagat attactcctg aagaaaatca
     2581 agaagacaac attggttacg attttctggg atctataacc aattgattaa tctaggagaa
     2641 aataccgtcg agtaataaat tgattttcac aatcttcctt cagagttacg ttatcaataa
     2701 ctagtagaat taattgtttg tcgtatattt tttaattaat tttccatatt ggggatactg
     2761 ttctaatagt ttcttcctat ctcctagttt ccaatcccta taatcaaagc caggagatac
     2821 cgtacaaccg accagtgagt atgatttctt gtcattaatg gacgctgcga accaacaacc
     2881 tgattttatg attacttgaa atctttctcc tttatcgtga cttggaccaa tcaggatttt
     2941 ctccatctca ccattcgaat ttatcacatg taatgttaaa ctactgccag aatagaaatg
     3001 ccaaatctca tctgaactta ctgtatgaaa tgatgcaaat tgatttcctg ttagcaagta
     3061 atagatggca gtacatgctg atctggttcc atcatactct ggtaaatcaa ttttcttatc
     3121 tgacacataa gtattggtaa agtatccacc ttctggatgc ttttgtagtc cgagtttttt
     3181 tatccagaat tttgcattct tattcaatga tctgaaatat tcattactaa cttatttgaa
     3241 tatgccctaa ttttctgatt ccttgccatt acgtattctt tttgagtatt agaataaaaa
     3301 tttactttgt agaaatgtcg aatataacgg atcagatcat atgatttccg tattattatc
     3361 tcattagaca cttggtttac taaaacaaga aattgatttc gtcgtcaagt tgaattttga
     3421 ctttatatca tattattccg aataatttcc tattccattt ttccgaaata ggatttgagg
     3481 ctatcaaaat gatagattaa ttcaaagttc aaaggatgga ttatacaaat caacaaggac
     3541 atttatgaag gaaaatatta tataacttag atgtagaata tacactatat ggtaagagcg
     3601 ctgcaaatat tgcttttgat cttcatgcta tctattgcag gtacattagc gcaggttaac
     3661 ttgatagagg ctgcaactga gaaaaattca actcgtgatg gaacatcagc caagaatgaa
     3721 gatgtttttg cattattaca acttgaaaaa gacgtagcga agcatgaagg ttccttaaaa
     3781 gatcttcatg cgggtaacaa aagtccattt gaccttttag gtgaagtaaa gaatgatgaa
     3841 aaattcaaac cagaatcagg cagcttcctt ccagaatatg atgatacccc agaagataac
     3901 gactgatagg ttcattatta ctatttaata aaatgaagta actcctgcga tgtaatttag
     3961 ttttgtagac cgtggtaaga tttggtattt ttatcatgaa ttcatttttt tgagaaggca
     4021 attctgaaat caatgctctg aaatttttaa atgtggaagg tattaccaca cttgaaaacc
     4081 atctttctta cagtatttta taatagaatc ggaaagcaaa aaatatttat tatctggact
     4141 tagattcgaa gtcgtaagta atttgttcaa tcttagattt agaactttag gatatattat
     4201 tggattttca gcaatatttc ttattcttac atcaaatttg atgattaatc atcaaaattt
     4261 ctcaaccgca tatcctatcg tcaacaaggt ttcctttgac gaattaggta aatttgcaat
     4321 aatgcctatg aaggatacac cccgtgattt tggaccttca tctattacaa caaatccaaa
     4381 caatgaagaa tggaaaaata gactttgtga aaatactaat caagctggaa tcaacatagg
     4441 aattcctttc atgtgtgatc catctaataa cattgggcaa aacgaaaaca ctaaccagca
     4501 aaacgaaaac actaatcaac taggtcaaga catttctgac aaagtacacg aaaagattgg
     4561 aaatttaaag gataaatttg atgattcaat atttggtaat atcgaaagtg acaattccca
     4621 gtccaatagt gttcaatcca actctaaaaa tgacaataat aatggtaaag gtaacaacaa
     4681 aaatggtaat gatgacggta ataatgaaca agagaactcc gaacaacagc tattcgataa
     4741 acaaggagga ggaaaagcaa aaagtgaact ggatgatgat atggaaggaa atagcggtaa
     4801 tcaccacaag acaaacaatg gaaataatga caataacgca aataatggta ataatcaggg
     4861 caacaatggt aacaatcagg gcaacaacaa tgacgacggt cttggaattg ctggcctgga
     4921 cctcggtctg aatatcgaca aaaaactggg taaagtagat gagaaaattg ataatttaaa
     4981 gaataatttg ggtcctagca aacaggaaaa caaagataat caaaaaaaca ataacgacca
     5041 aggtgagaat gatgatactc ttcgaatcac tgggttagtc ccaaatattc agaatataca
     5101 ggcaaacttg gataagcaaa ttgagaaatt aaaggacaag tttgaaaatg agaaggataa
     5161 tcaacgactt atagatcagc gtaacgaatt cgatgatgac gaggacgatg acaataaaga
     5221 tagtgatggt ggcgatgatg gtaatgctaa ggattatgac ggttatgggt ttaagggcga
     5281 cgatgacaac ggaaacggaa ataaacacga gaatggagaa gagaacttta actttgctgc
     5341 agcgggtgat ttcggttgct caacaaatac ccaaaacact atagaaaaca tgcaaagtaa
     5401 agatcccgaa atagtcttga cgttgggaga ccattcatat catagtactg cagattgttg
     5461 gtttgacatg atgtccccag ttaaggataa actaatgtta actctcggat atcatgatgt
     5521 agaagatggt caagcaaaaa tgaatcagta tatgaatagc tttgctttgg aaaaaccatt
     5581 ttattcttac gattacaata aagtccactt cctagtcatg tccgcaaaat ca
//
LOCUS       DASPFX010000133         6997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1460199, whole genome shotgun sequence.
ACCESSION   DASPFX010000133 DASPFX010000000
VERSION     DASPFX010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6997
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460199"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..773
                     /locus_tag="VD694_02885"
     CDS             183..773
                     /locus_tag="VD694_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit B"
                     /protein_id="HXW11680.1"
                     /translation="MFFLVRLGVNYTSNIKIAVVALFAIVMSTSTMIAIAQTAEGHGV
                     QAQLQSRFVRIQDEAFSAQTLNTGDQLVVTGNLQSLVNKPLRAWLSLFSESTNAGNRW
                     EFIARDPPGNIFDIPPQGTIPYSITAKALEPGVYHVHTQLNVEHVGPGLGPGQTIQVS
                     GPAILKPVPWGNVAYQVILIGAGLGVTFATRPWQVI"
     gene            complement(889..1803)
                     /locus_tag="VD694_02890"
     CDS             complement(889..1803)
                     /locus_tag="VD694_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HXW11681.1"
                     /translation="MVKDISLFSDRCPRCGKGPMVTDNSSGEMFCGNCGFVVTERIEE
                     TGPEWRAFSKEEHEDRSRAGIPTSLAMHDMGLATIIGPVDKDASGKPLSASMKSTIER
                     LRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGDAVIEKAAYVYRKALEKGLVRGR
                     SISALVAAALYAACRDTETPRTLKDIAHASNIKKKDVARCYRLLIRELDLKMPVVDPV
                     KCVARIASKSGLSEKTKRKALEILKKAEQGKISAGKDPMGLAAAALYVACVMNGENKT
                     QKDVAEAAGVTEVTIRNRYKGLKIHLKL"
     gene            2178..2603
                     /locus_tag="VD694_02895"
     CDS             2178..2603
                     /locus_tag="VD694_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HXW11682.1"
                     /translation="MTSIDGHTDEEIRKIYDFKNIAVVGMSRDPAKAAHFVPQYMIEM
                     GYNIIPVNPSTAEILGRRTYSRVSDIKSQVDMVDVFRPSEDVFPVVEDSIKKPGIKVI
                     WLQEGIQNSDAEKIAKERNIDFVFNRCIMAEHMRLFNDD"
     gene            complement(2621..3205)
                     /locus_tag="VD694_02900"
     CDS             complement(2621..3205)
                     /locus_tag="VD694_02900"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HXW11683.1"
                     /translation="MDIRGYYAILGVSHNANFLEIKKSYRKLARKYHPDRNKSPLAEE
                     TIKKINEAFEILSDRRKRKQYDLESSNIYDATESTIEEKGENPSDQMQRNSYNFTGPE
                     SKSNLGYDNLLLDTIKSRFHILIEPSMCLAFGGCETIAPKVFVVDKSKHINPKAKVQS
                     ETADTLDRIVMAAQACPTKAIKIIDRYTGNQIYP"
     gene            complement(3321..3683)
                     /locus_tag="VD694_02905"
     CDS             complement(3321..3683)
                     /locus_tag="VD694_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11684.1"
                     /translation="MQTTGSDWINLTVKFSSNCKTCGKKIAKGELALWSRSNKAIKHV
                     ECHTKDLSNPTYALANSKQLKCAICGSLAGCPECEFEKDCDRSVVSQLCVCKRCYNDK
                     MPLEKYYEVINSLVIGKK"
     gene            complement(3788..4036)
                     /locus_tag="VD694_02910"
     CDS             complement(3788..4036)
                     /locus_tag="VD694_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11685.1"
                     /translation="MSISLNYKNSLDTLFTILKMGGKIIHAPCHLSLMLNGLRYYSIE
                     VTINGDRLLIQAFEQEASDLFQAAMTILDEKEIKVIFR"
     gene            complement(4214..4489)
                     /locus_tag="VD694_02915"
     CDS             complement(4214..4489)
                     /locus_tag="VD694_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11686.1"
                     /translation="MYSASVRMMISNRTLFVHSDHALVVSQRYTTISSINRMTRHMQK
                     RYFCFECGTNVLEEKMENRIAGWFGICKQCNKNNIYSVDYIKEKSLI"
     gene            complement(4563..5672)
                     /locus_tag="VD694_02920"
     CDS             complement(4563..5672)
                     /locus_tag="VD694_02920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11687.1"
                     /translation="MHKIGNSYTVVFTILSLSLILVGVTMLQSGYSQAPNTFSVSSIV
                     LGNDKPISATIDEKTNKVYGVFANENGAKNLLYIIDSTQNKVLDTIKIGSEKNDFLTN
                     IALDPERGILYAAGQYMVNENDTTVAYDTVYVINSTNNKFKRIQLYGETEEGKEGSLA
                     GISVNPVTNKIYVGSLYPEGGRPGLYVIDGNTLESVYLEKWQYGIKDIQLDPESNFLY
                     VGAKYDNLVSAIDESNNQIVENITVHSPIALTINAKENILYEAGSDGKVNAIDLSSKK
                     NISSIQAEYVKNILYNPNDKLLYIVDQNTTNILSKNSNGTKSMAIAVNTTNNVVNKFE
                     TNFIVENILINTSTDQVYLLGYDGKNSKLFIINSH"
     gene            5942..6526
                     /locus_tag="VD694_02925"
     CDS             5942..6526
                     /locus_tag="VD694_02925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11688.1"
                     /translation="MLSNTVIGKISAVCFLVCFSFTILVMMPPLRESGFGSFQVQGLS
                     NNSNTTSANGTQISTNGTVANGTQISKTAQINASDSKAPTDGNSLDIDLQIQPFPITK
                     NIDSQFMIKFLQPSSQTVQVHVDYDFAITKNNNEVFRASSITGQPLLHTAEGTVKIPY
                     KFTQDGEYSLQVSVMGINFIPIKTEQALFDLKVS"
BASE COUNT         2164 a         1260 c         1160 g         2413 t
ORIGIN      
        1 ttaccatcaa aggattcctt tttaaatttt gcgtctaaaa tcttcaaacg tactttttta
       61 attagaaatt tctaggatac cttttcatgc tttaagattt taggcgtgtt ccagacaata
      121 ttctcgctaa ataacaaaga aacatacaac gagaaagtaa tgtcatagca aagcatatat
      181 ctttgttttt tctggtaagg ctaggtgtaa attatacgtc gaacataaag atagcggtag
      241 ttgcactatt tgcaatagta atgtcaactt cgacaatgat agcaattgct caaactgctg
      301 aaggacatgg agttcaagct cagcttcaaa gtagattcgt aagaattcaa gatgaagctt
      361 tctcagcaca aacattgaat acaggagatc agctggttgt gactggaaat ctacaaagtc
      421 ttgtaaacaa accactgcga gcatggttat cacttttcag tgagtcaacc aatgcaggta
      481 acagatggga gtttatagca agagatccgc caggaaacat atttgatatt cctccacaag
      541 gaacaattcc gtactcaatt actgcaaaag ctcttgaacc aggtgtttac catgttcata
      601 cacagttgaa tgtcgaacat gtaggtcctg gactaggtcc tggtcaaact atacaagttt
      661 ccggaccagc aatattgaaa ccagttccgt ggggcaatgt tgcatatcag gtaatactga
      721 ttggtgctgg acttggagta acatttgcaa caagaccgtg gcaagtaatt taaaaaaatc
      781 cactattttt tatctatttt tttagttctt ttatcaagta actatttgtt aaattcagta
      841 actatatgtt atgatttcaa aagcgcaaaa tttagagtaa taataaaatt atagttttag
      901 atgtatcttc aatcctttgt acctatttct tatggttact tcggttaccc cagcagcttc
      961 tgctacatct ttttgagttt tattttcgcc attcattaca caagctacat acagagcagc
     1021 ggcagctaat cccataggat cctttcctgc ggatattttg ccttgttcag cttttttcaa
     1081 tatctctaaa gcttttcttt tagttttttc agaaagtcct gacttgctcg caattcgcgc
     1141 tacacactta acaggatcta cgacaggcat tttcaggtca agttctctta ttaataatct
     1201 gtaacatctg gctacgtctt tcttcttgat gttacttgca tgagcaatgt cctttaatgt
     1261 tcttggagtc tcagtatccc tacaggcagc ataaagtgca gcagccacca aggcggaaat
     1321 tgatcttcct ctaacaagtc ctttctcaag tgcttttctg tacacgtatg cagctttttc
     1381 aataacagca tctcctactg caagtttatc ttttagccta tccaattcgc taaaagcttg
     1441 tctaaaatta cgatctacgg gttcatgtac ttgacttcta ctatcccatg ttcttagcct
     1501 ctcaatggta cttttcatgg acgcagaaag tggctttcct gaggcatcct tatcaacagg
     1561 tccaattatt gtagcaagtc ccatatcatg catagcaaga gacgttggga tgcctgcgcg
     1621 actgcggtct tcatgctctt cctttgaaaa agctctccat tctggaccag tttcctcaat
     1681 acgctcggta accacaaatc cacaattgcc acaaaacatt tctccacttg aattatctgt
     1741 gaccattgga ccttttccgc atcttggaca gcggtcacta aataaggaaa tatctttaac
     1801 caattctaat accccacaaa aattgagaca atgtttgttt cttatattta tgttttattc
     1861 tcatatatat gcattgtcgt aaataattcc gagtcggtaa tatatacagg aaattataga
     1921 acttttccaa actagagctc gattttgtgc ttttttttct ggtttatagg agaactttta
     1981 aatttatcag tgtctgggaa tgtttcgttt tcttcttcta atcttttcaa cttttttact
     2041 ttcatttctc ctgacgctat atgcatgtga tcttttggat attttcacaa gaccattaca
     2101 atttggttca tataaaaacc atatagcacc agcttttgca tactaaccat tttaaggcat
     2161 catcgcgttg aatctatatg accagtatag atggacatac agatgaggaa attagaaaaa
     2221 tttacgattt caagaatata gctgtagtgg gaatgtcaag agatcctgct aaagctgctc
     2281 actttgttcc tcaatatatg atagaaatgg gatataacat aataccagta aacccttcaa
     2341 ctgccgaaat actgggtaga agaacatact cgcgtgtttc ggatatcaaa tcacaagtag
     2401 acatggtgga tgtttttagg ccgtctgaag acgtctttcc tgttgtggag gattctataa
     2461 agaaacctgg catcaaagta atttggttgc aggaaggtat tcaaaatagt gatgcagaaa
     2521 aaattgcaaa ggaaagaaat attgactttg tgttcaacag atgcatcatg gcagagcata
     2581 tgagactatt caatgatgat tagcgtgaat tttgcatttc tcaaggatat atttgatttc
     2641 ctgtatatct atcaattatt tttattgcct ttgtcggaca agcctgagct gccataacga
     2701 tcctatccag agtatcggct gtttctgatt ggacttttgc ctttggatta atgtgcttgc
     2761 ttttgtcaac tacgaaaact tttggagcga tagtttcaca accaccaaat gccaagcaca
     2821 tacttggttc tattagaata tgaaatcggc ttttaatagt atctagaagc aagttatcat
     2881 aaccaagatt gcttttagat tcaggtcctg taaaattata tgaatttctt tgcatttgat
     2941 ctgatggatt ttcccccttc tcttcaatag ttgattcagt tgcgtcgtaa atatttgacg
     3001 attcgaggtc gtattgtttt ctttttcttc tatccgatag aatttcgaat gcttcattaa
     3061 tttttttgat tgtttcttct gctagtggag acttgtttct gtcagggtga tattttcttg
     3121 caagctttcg atatgatttt tttatttcta gaaaattagc attatgcgag actccaagaa
     3181 ttgcataata gcctcgaata tccatctgtc taaagtaaca atatccatca tttaattact
     3241 tttcacagat agtaactcaa taataacctg gtatgaagat cataaatttg gcaaatctat
     3301 gcttcgatac tgaaaatgct ttacttttta ccaattacaa gtgagtttat aacttcataa
     3361 tatttttcca acggcatttt atcattataa catcttttac aaacacatag ttgtgaaaca
     3421 acagatctat cacagtcttt ctcaaattca cattcaggac atccggccaa agatccacaa
     3481 atggcacact ttagttgttt tgaattagcc aaagcgtatg ttggatttga caagtctttt
     3541 gtgtggcatt caacatgttt aatagcttta tttgatcttg accaaagcgc caattcacct
     3601 ttagctattt tttttccaca tgtcttgcaa ttactactaa attttaccgt aagattgatc
     3661 caatcactgc cggttgtttg caatggtttg aataaagcac gtcaaagata ataatctaac
     3721 gaaatctttt tgtagatagc attcgacaat gaaaagaact caaatcaaca aaattggaca
     3781 aaattagtta tctgaagatt actttaattt ctttttcatc gaggatggtc attgccgctt
     3841 gaaacagatc agatgcttct tgttcaaaag cttgtattaa caaacggtct ccatttattg
     3901 ttacttcaat agaataatat cttaatccat ttaacatgag tgataaatga cacggagcat
     3961 gtataatttt tccacccatt ttcaaaatag taaatagggt gtcaagacta tttttgtaat
     4021 tcaaagatat actcacattg tagattcaat aattcagtga aataattaaa atagtgaata
     4081 gaggaattta tctgtgctat gcctaacatc aatgtaagat aagagaaaat atgatatagt
     4141 tactagatca tcttggagag agggagacga taagaggata aaggaattca gtcaagccca
     4201 tagtactaac tgatcaaatt agcgattttt ccttgatata atcaaccgaa tagatgttat
     4261 tcttattaca ttgtttacag atgccaaacc atcctgctat tctattttcc atcttttctt
     4321 caagaacatt tgttccacat tcaaaacaaa agtatctttt ttgcatatgt cttgtcatcc
     4381 tattaatcga tgatatcgta gtatatcttt gtgataccac cagcgcatga tctgaatgga
     4441 caaaaagagt tctattagaa atcatcattc ttactgatgc tgaatacatt ttctgcttga
     4501 ttttgtctat tggattctcg aacctatgag aatagttcct gagctattgg tgtcaagtca
     4561 aatcaatgtg aatttataat gaatagtttt gaatttttcc catcatatcc taagagatat
     4621 acctgatctg ttgaggtatt aatgagaata ttctcaacaa taaaatttgt ttcaaattta
     4681 ttaacaacat tattggttgt gtttactgct atagccatac ttttagtgcc gtttgaattc
     4741 ttagataata tgttggtcgt gttttggtca actatgtaga gtaacttgtc atttggatta
     4801 tacaagatat tttttacata ctcagcttgt atgctggata tgtttttttt gcttgagaga
     4861 tctattgcat taaccttccc atcgctacct gcttcgtaaa gaatgttttc ttttgcgttg
     4921 atagttaatg ctattggact gtgtactgta atgttctcca caatctggtt atttgactca
     4981 tctattgctg agaccaaatt gtcgtatttt gctccaacat ataaaaaatt agattccgga
     5041 tctaattgaa tatccttaat tccatattgc cacttttcta aatagacaga ttctaatgtg
     5101 tttccatcta ttacatacaa tcctggtcta cctccctcag gatataacga cccaacgtat
     5161 attttattag taacaggatt aacagatatc ccggccagag aaccttcctt gccttcttcg
     5221 gtttcaccgt acaattgaat tcgcttgaat ttattgttag ttgagttaat cacatacact
     5281 gtgtcgtatg caacggtagt gtcattttca ttaaccatat attgacctgc tgcatataat
     5341 attccccttt cagggtctaa tgcaatattg gtgagaaaat cattcttttc ggatccaatc
     5401 ttaatggtat ctaatacctt gttctgagta ctgtcaatta tgtagagtaa attctttgct
     5461 ccattctcat tcgcaaaaac cccatagacc ttgtttgttt tttcatcaat tgtggcagaa
     5521 ataggtttat catttccgag tacgattgaa gatacagaaa acgtgttagg ggcttgtgaa
     5581 taacctgatt gtaacatagt gactcccacc aaaatcaaac tgagagataa tatggtaaaa
     5641 actaccgtat aggaattccc aatcttatgc atatcaataa ttactaaatt tacttattaa
     5701 agatatagta acttaatgag ggaaaaatgt ttgcttttat taacattcaa aaattagaat
     5761 cgtcgaatcc agtgtgtatt cccccttatc ctgctcttat acctaattca tgctagttat
     5821 tatggcgcgg atgaagactt tagaaaatag gaatcgtatt gtattggatg atataatcct
     5881 gaaattaaac ctacagaaaa ttcgtatagg atcggcaatt gcaagattta ttaaataatt
     5941 attgctatct aatactgtga ttggaaaaat cagtgcggtt tgttttctag tatgtttctc
     6001 ctttacaata cttgtcatga tgcccccatt aagggaatca ggttttggtt cttttcaggt
     6061 tcagggctta tcgaacaata gtaatactac atccgctaat ggcacgcaaa tttcaaccaa
     6121 tgggacggtg gctaatggca cgcaaatttc taaaactgcg caaattaacg cttccgattc
     6181 caaagcgcct acagatggaa atagcttaga tattgattta caaattcaac cttttccgat
     6241 tacaaaaaat atagattcac aattcatgat taaatttttg caaccatctt cgcagacagt
     6301 tcaagttcat gttgactatg attttgcaat aaccaaaaac aacaatgagg tctttcgagc
     6361 atcctcaata accggtcagc cgttgcttca tacagctgaa ggcactgtga aaattccata
     6421 taaattcact caagatggag aatattcgct gcaagtaagt gtaatgggga ttaactttat
     6481 tccaataaaa acagaacagg cgttatttga tttgaaagtc agctgagata ttcaccggtt
     6541 ggtattattc aaatgtgcat tctattctac tagataaaat gcaaacgcgg attattgatt
     6601 ttccgtctca ttggatgttt cattcccagg tgatgtatca atttctaaac gagtatcaga
     6661 atttccaact tcattaatca agttgaagtc actattattg ataagcgcat aagcgataaa
     6721 tagcaacagt atcacgcaga atatcgcact cgcaagcaga agggaattca ttgttgtatt
     6781 gaatattttt tgagtaattt aaattagtat tagaacttga gtttcttaag taaatctaaa
     6841 acatgaatta agatctgttt gaaagcattt cttgagatag atttgaggat aaaaatttta
     6901 acaaaaattg taaacattaa ctgagctcaa tgaatatgag ccaataattt catcacaatg
     6961 tccataaacc aaattgaatt tatcaaaatg tttagaa
//
LOCUS       DASPFX010000134         2263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1868560, whole genome shotgun sequence.
ACCESSION   DASPFX010000134 DASPFX010000000
VERSION     DASPFX010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1868560"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1033)
                     /locus_tag="VD694_02930"
     CDS             complement(<1..1033)
                     /locus_tag="VD694_02930"
                     /inference="COORDINATES: protein motif:HMM:NF016310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase X catalytic domain-containing protein"
                     /protein_id="HXW11689.1"
                     /translation="MHLTREEEEGLDGKNGNPISTAYKILLSIGKATNAERLIPVEWV
                     HLSGVNYNTIGDAGAEFLTKYSEEARFVVPTSINPMGYDSNKQNNLSSNFKKQQGKIA
                     KAYEKMGSIPSFSCIPYELFELPETGHNVSFAESNAAVMANSVFGLRTNKESSLSALA
                     SAITGKAPFSDLRIESTRNPKIRIKIDKELNTELDYGILGYFSGKSVKESCVSFGSNI
                     SNIDIYKTKSLAAALGTSGACGMFSSKDTHDETISFGKEEEKSTIDELNTTDSGDVIA
                     LGSPQLGMYEMEQLSKMIVGKKFSKKCMIFCARPVYEKSCKSGVAKILEKAGANIICD
                     ACTCLSPLLS"
     gene            1141..1401
                     /locus_tag="VD694_02935"
     CDS             1141..1401
                     /locus_tag="VD694_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2024 family protein"
                     /protein_id="HXW11690.1"
                     /translation="MECAVYDTYVTKKDGKIMHFDVIVESSTPHERAIEYGKEYLKDA
                     GQEGQSMTQEECQFCHVQEAPKIVEDSIQKSGYFIQKMEGCP"
     gene            complement(1561..>2263)
                     /locus_tag="VD694_02940"
     CDS             complement(1561..>2263)
                     /locus_tag="VD694_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HXW11691.1"
                     /translation="QAQMIHQDPYSSLNPLMKVFDIIKEPIDIFYKDYSSEERTNKIL
                     TVLDDVSLKPSAEFAEKYPHMLSGGERQRVAIARSLVIEPRLIIADEPVSMLDVSIRA
                     QILQIVKQLSISRNITVFYITHDLATSRYIGDDISVMYAGKIVESGPIDTVLSNPLHP
                     YTQALLDSISEPKFENIDKEKVIRIKNFDSTPAESGCKFFNRCPYSMDICKKEPQLER
                     KEKNHDVSCFLYEKN"
BASE COUNT          670 a          420 c          386 g          787 t
ORIGIN      
        1 gcgataacag aggcgacaaa caagtacatg cgtcacaaat gatgtttgct ccagctttct
       61 caagaatctt cgccacacct gatttgcacg atttttcata gactggcctc gcacaaaaga
      121 tcatgcattt tttggaaaac tttttaccta caatcatttt ggacaattgt tccatttcgt
      181 acattcccag ttgaggactt cctagagcta tcacatctcc tgaatctgta gtattaagtt
      241 catctatagt tgatttttct tcttctttcc caaatgatat cgtttcatca tgtgtatctt
      301 tgctggaaaa cattccacat gcgcctgaag tacccaacgc agcggccaat gatttagttt
      361 tatatatatc tatgttacta atattagaac caaaagaaac acaactttct tttacagatt
      421 taccagaaaa ataacccaat attccataat ccaattccgt atttagctcc ttgtcgattt
      481 taattcttat tttgggattt cttgtacttt caattctaag atcagagaag ggcgccttac
      541 cagttatcgc actagccaat gcgctaaggg aactttcttt gtttgttcgc agaccaaaga
      601 ctgaatttgc cattactgcg gcattacttt ctgcaaaact aacgttatgt cctgtttctg
      661 gtaattcaaa tagctcatac ggtatacatg aaaacgaagg tattgagccc atcttctcat
      721 atgctttggc tattttgcct tgttgtttct tgaaattgct agaaagatta ttttgtttat
      781 tactatcata tcccatcgga tttatgctgg taggaactac aaatctagct tcttcactat
      841 actttgttaa aaactccgct ccagcgtcac caatcgtgtt gtaattaaca cctgatagat
      901 gaacccactc tactggaatt agtctttctg catttgtcgc tttccctatg gagagcaata
      961 tcttgtatgc cgttgaaata ggattgccat tttttccatc caggccctcc tcttcttctc
     1021 tagttaaatg cataaagatt atgaaattgc cgacctataa taattatgac tggctaaatt
     1081 gatgatcatt ttttgcaggt attgaataga ataaatagag actctaagta ccatacttgc
     1141 atggaatgtg cagtatatga tacatatgta acaaaaaagg atggaaagat tatgcacttt
     1201 gatgttatcg tggaatcttc aactccgcat gaaagggcaa tagagtatgg taaagagtac
     1261 ctgaaagatg ctggtcaaga aggtcagtcg atgactcaag aggaatgtca attttgtcat
     1321 gtccaagaag ctccaaagat agttgaagac agcatacaaa aatccgggta ctttatacaa
     1381 aagatggaag gatgtcctta ataaactagg ataaggttca ttcctaaaaa ttaaacatcc
     1441 gcgagttttt tatttttttg ttactattgt aagtaacctg tttgatatta catgaaaggt
     1501 agaatgcatt acattcttct gaattagaaa gttctttctt gattctatgg taattagatt
     1561 ttaatttttc tcatacagaa agcatgaaac atcatgattt ttttcttttc tttctagttg
     1621 tggttctttt ttacatatat ccatactgta aggacatcta ttgaaaaatt tacaaccact
     1681 ttctgcagga gttgagtcaa aatttttgat tctaattact ttttccttgt ctatattttc
     1741 aaatttcggc tcagatatgg agtctaacaa tgcctgcgta taagggtgta atggattgga
     1801 tagtactgta tctataggac cgctttcaac tatcttgcca gcatacatga ctgaaatatc
     1861 atctccaatg tatcttgatg ttgctaaatc atgggtaatg tagaataccg ttatgttacg
     1921 actgatactt aattgcttta ctatctggag tatttgagct ctaatcgaaa catcaagcat
     1981 agaaacgggc tcatccgcaa tgattagtct aggctcaatg acaagcgatc tagcaattgc
     2041 aactctttgt ctttctcctc ccgataacat atgaggatat ttctcagcaa attctgctga
     2101 tggtttaagg cttacatcat ctaatactgt aagtatttta tttgtacgtt cttcgctcga
     2161 gtaatcttta taaaaaatat caattggttc ctttatgata tcaaagactt tcattagggg
     2221 atttagagaa ctatagggat cctggtggat catttgagcc tgt
//
LOCUS       DASPFX010000135         4331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_155928, whole genome shotgun sequence.
ACCESSION   DASPFX010000135 DASPFX010000000
VERSION     DASPFX010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155928"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VD694_02945"
     CDS             complement(<1..471)
                     /locus_tag="VD694_02945"
                     /inference="COORDINATES: protein motif:HMM:NF013428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HXW11692.1"
                     /translation="MKFKHRGKVKDVYELDDENLLFHFTDRVSAYDVPMVTNIEGKGE
                     ILCKFAEFWFNYLDIKNHMVRLDAKDKMVVKKLSMIPLECVVRGYLYGSLFERYTTTE
                     NILGLDRNLKLGSRLSIPIFDPTTKSQIHDVPISEDQILELEILTKSELDYLRNT"
     gene            complement(500..1963)
                     /locus_tag="VD694_02950"
     CDS             complement(500..1963)
                     /locus_tag="VD694_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HXW11693.1"
                     /translation="MYFENLREYVDSLEKEGQLKRIRTQVSVELEIAEILRRIMYEKN
                     GPAVLFENVEGYDIPVLGNAFGSLSRLKLALNMENFEDIGDRVTALTRLKMPHGLLDK
                     FKMLPKLSEISDYGPKSTTSGPVTEIIETNPTLDNLPILKSFPNDSGRFITFGITVTK
                     NPETDVRNMGVYRLQVIGPKKAIMHWQIHKRGALHYQINKEKMQKTEVAIVIGADPAT
                     VFSAVAPVPEGLDKFLFAGMTRKKGVDLVKCKTVDVEVPASAEIVLEGYVDPSELNTE
                     GPFGDHTGYYTPPEPYPTFTLTGIMMRKNPIYLTTVVGKPILEDAYIGKVIERAFLPL
                     VRLFQPEVVDFSMPPAGWFQGMAIVSIKKRYPGQAKKVMMGLWGMGQLSLTKILIIVD
                     HDINVHDINDVIWAVTTRSDPKRDTILIENTPTDTLDPASPLLNLGSKMGIDATKKSR
                     EEGYERPVQEEAVPDESTVRLVTSKWNEYGFGQENTI"
     gene            complement(2360..2944)
                     /locus_tag="VD694_02955"
     CDS             complement(2360..2944)
                     /locus_tag="VD694_02955"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HXW11694.1"
                     /translation="MYDVKVLKKLLAPYLSKKSISPSSKIEFKFAAVMITIHFKNKSP
                     NVILIKRTKLVKNHAGEISFPGGNFMKVDVEMLKTAIREMSEEIGIKVKKDQVIGHLK
                     AERTLSSRYIIYPYVAILDNIPKITDTNYEVEKIIDAPLIPLLKSREDDIEHEKEFSI
                     ARLPKFTYKNEVIWGATARILDQLAEPFSQGTHS"
     gene            3081..3851
                     /locus_tag="VD694_02960"
     CDS             3081..3851
                     /locus_tag="VD694_02960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11695.1"
                     /translation="MDIKVIYEMNPPKVLYNNYFDNKTIIKNIDLFLSRTKRISEYVD
                     GIHLTDNVLGIPRVSSLMIVSMLRKIGVTKPISCTCRLYDKNLISVLQFVTDSIIAGV
                     YSILILRGDEPIIGNKIFDIPPTKIIKTLSAHNFSNFIKLDLSFPNKIENSAKIKNKL
                     EARPRAFVTQSISSIENLKAIVELSKPYDIDVIPCIMCPSKRNEVSAKNIGLDWGSYV
                     NEPEKFVYDASNLTNKVLLCSPNSFDDGLDLVKKIKKS"
     gene            complement(3848..>4331)
                     /locus_tag="VD694_02965"
     CDS             complement(3848..>4331)
                     /locus_tag="VD694_02965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HXW11696.1"
                     /translation="FGLKIAGLQKDKRRQIALAHLETMQLTKFADSYVYQLSGGMKQR
                     VALARALVMDPEILLMDEPFASLDSQTRDLLSVELQLIWSKTRKNIIFVTHNIMESVC
                     LGDRVFVFTNRPGRIKREITIDHRRPRLTEDDELKPYYREVLGELRSEISAARKQKSD
                     "
BASE COUNT         1283 a          838 c          740 g         1470 t
ORIGIN      
        1 agtatttctt aaataatcta actcactttt ggtcaagatt tctagttcta ggatttgatc
       61 ctctgaaatg ggcacatcat ggatttgtga ttttgtcgta ggatcaaaaa ttggtatcga
      121 taatctcgat ccaagtttca gattacgatc cagtcccagg atgttctctg tagtagtata
      181 cctttcaaac aggcttccgt acaaatatcc tctaacgaca cattcaagag gaatcattga
      241 gagtttcttt acaaccattt tatccttggc atctaacctg accatatgat tcttgatatc
      301 tagatagttg aaccagaatt ctgcaaattt gcacaggatt tcacctttac cctctatgtt
      361 agtaaccatt ggaacatcat aagcggaaac tctatctgtg aaatgaaaca gcaaattctc
      421 atcatctaat tcatatacat cttttacctt acctctgtgt ttgaatttca ttattcatca
      481 tttgataaag atatatttat catatcgtgt tttcttgccc aaatccatat tcattccatt
      541 tacttgttac taatctaact gtactttcat ctggaactgc ttcttcctgt accggtcttt
      601 cataaccttc ttctcttgat tttttcgttg cgtctatccc catctttgaa ccgagattta
      661 gcagaggtga agctggatcc agtgtatcag ttggtgtatt ttcgattaaa attgtatctc
      721 tttttggatc agatctagtt gtcacagccc aaataacatc attaatgtca tgtacattaa
      781 tatcatgatc tacaataatc aaaatctttg tgagtgacag ctgccccatc ccccaaagtc
      841 ccatcataac ttttttggcc tgtcctggat atcttttctt tattgatact attgccatac
      901 cctgaaacca acccgcaggg ggcattgaaa aatcaactac ttctggttga aagagcctta
      961 ctaatggaag gaatgcacgt tcaataacct ttcctatata tgcgtcttct agtattggtt
     1021 ttcccacaac tgttgtaaga taaattggat tttttcgcat cataatcccg gtaagggtaa
     1081 acgtaggata gggctcagga ggggtgtagt atccagtatg atctccaaag ggaccttctg
     1141 tgttaagctc tgaaggatca acgtaacctt ccaatacaat ttccgctgac gcaggaactt
     1201 ccacatcaac agttttgcat tttaccaggt ctactccctt tttacgagtc atacctgcaa
     1261 acagaaattt atctaatcct tctggcacag gtgcaaccgc actgaagacc gttgcaggat
     1321 cagcacctat cactatagca acttctgttt tctgcatttt ttctttgtta atttgataat
     1381 gaagtgcccc ccttttgtgg atttgccaat gcattatggc ctttttggga ccgatgactt
     1441 gtaacctgta cacccccata tttcgaacat ctgtttcagg attctttgta acggttattc
     1501 caaacgttat aaatctgcca gaatcatttg gaaatgattt gagtattggt aggttatcta
     1561 atgttggatt agtttcaatg atttctgtga caggccctga agtggtgctt ttgggcccgt
     1621 aatcagaaat ttctgaaagt ttaggaagca tcttaaattt atccagtaaa ccgtgaggca
     1681 tttttaatct tgttaacgcc gtcaccctgt ctcctatatc ttcaaaattt tccatattaa
     1741 gggctaactt caatctactc aaagagccaa atgcgttacc aagcacagga atatcatatc
     1801 cttctacatt ctcaaacaag accgcagggc catttttctc atacattatt ctacgaagaa
     1861 tttctgctat ctccaactcc acagaaacct gtgttcttat tctctttaac tggccttctt
     1921 tctcaagaga gtccacatat tctcgcaggt tctcaaaata cacattgata ctttttttat
     1981 atgagatatt agttttttta attcggagtt tgttaaataa ggttgatagg tttctatatg
     2041 ttcaattgac tttacttttt ttaaatatag aattctatag cttggaaatt gaaaataaac
     2101 gtatcaagaa ttaagtataa aattaactac aatcccgtga attacaacac aagtacaggt
     2161 aagtacgaga gcggaaatga atcttataca ttttacagtc aggccaaggt aaacctgtgg
     2221 aaatgtgaca aatgcaccat gaaatttggt acattcagaa gtctgagaaa acacaaatct
     2281 gaagtacacg catattgagt cataatgata tcaattttag taccagattt atttctgcaa
     2341 gcccggaagc attagccttt caagaatgag tcccttgtga gaaaggttca gccagctgat
     2401 ccaggattct ggccgtagct ccccatatga cttcattttt atacgtaaat ttaggtaatc
     2461 gagcgatgga aaattctttc tcatgttcaa tgtcatcttc ccgactttta agcaggggta
     2521 ttagcggagc gtctattatt ttttctacct cataattggt atcggttatt tttggaatat
     2581 tatccaatat cgcgacataa gggtatatta tatagcgtga acttagagtt cgttctgcct
     2641 ttagatgacc aattacctga tcttttttta cttttatgcc tatctcctca ctcatttctc
     2701 ttatggcagt ttttagcatt tcaacatcta ccttcataaa attacctcca gggaaggaaa
     2761 tttcaccagc atgatttttg acaagtttag ttctttttat caagatcaca ttagggctct
     2821 tatttttgaa gtgaattgta atcataaccg ccgcaaattt gaattctatc tttgaggaag
     2881 gtgaaattga ttttttgctc aaataaggcg ctaataattt cttgagaact tttacatcat
     2941 acaaccgaaa ttcgacctgg atgcaaatta cggaccaaat aaaaaaaact atcaagtgaa
     3001 atatctggag ttctgacgca aattgagatt ttaagattat aaattaagga tttaattatg
     3061 ataaacattg tgggataata gtggatatta aagttattta tgaaatgaat cctccaaaag
     3121 tactttacaa taattatttt gataataaga cgattatcaa gaatattgat cttttcttgt
     3181 caagaactaa acgtatatcc gaatatgttg acgggataca cttgacagat aatgtacttg
     3241 gtatcccaag agtttcaagt ttgatgattg tttcaatgct aaggaagatc ggagtaacaa
     3301 agccaataag ctgcacctgc agactttatg acaagaacct catttcagtc ttgcaatttg
     3361 tcacggattc tattatagca ggagtctata gcatactcat tcttcgcgga gatgaaccaa
     3421 tcattggaaa taagattttc gacattccac ctacaaagat tatcaaaact ctgtctgcac
     3481 ataattttag taatttcata aagttagatt tgtccttccc taataagata gaaaatagtg
     3541 ccaaaatcaa gaacaaactc gaagcaagac cacgtgcatt tgtaacacaa tccataagct
     3601 caatagagaa tttgaaggcc atcgttgaat tgtctaaacc atacgatatt gatgtaatac
     3661 catgtattat gtgtccgtca aagaggaatg aagtctctgc aaagaatatc ggtttggact
     3721 ggggttccta tgtaaatgag cctgaaaaat ttgtatatga tgcatctaac ttgacgaata
     3781 aagttctatt gtgttctcca aatagtttcg atgatggact ggatcttgtt aagaaaataa
     3841 agaaaagtta gtccgatttt tgtttacgcg ctgcgcttat ttcgcttctt agttcgccca
     3901 atacttccct ataatagggc tttagttcgt catcctcagt tagtcttggc ctcctatgat
     3961 caatagtgat ttctcttttg atccttcctg gtctgttggt gaatacaaaa actctatcac
     4021 caagacatac agattccatt atgttgtgag tcacaaaaat gatatttttt ctggtcttgg
     4081 accaaattaa ttgcaattcg actgatagta agtctcgggt ctgagaatcg agagatgcaa
     4141 atggttcgtc catgagtaat atttctgggt ccatgacaag tgctctcgct agcgccactc
     4201 tttgtttcat acctccagat aactggtaca cgtatgaatc agcaaatttt gtcaactgca
     4261 ttgtttccag gtgcgcaagg gctatttggc gtcttttgtc cttttgtagg ccagctattt
     4321 ttaatccaaa c
//
LOCUS       DASPFX010000136         2694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1685084, whole genome shotgun sequence.
ACCESSION   DASPFX010000136 DASPFX010000000
VERSION     DASPFX010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2694
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1685084"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..668
                     /locus_tag="VD694_02970"
     CDS             <1..668
                     /locus_tag="VD694_02970"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HXW11697.1"
                     /translation="DAAINPGNSGGPLIDTQGSVIGINTAIFSNTGVYSGVGFAIPSN
                     TISKVVTSLVQTGSYRHPYIGIVGLSLTPDLSKQIGVSQTKGFLITSITDGSPAEKAD
                     LKAGTSTKTYNGREINTGGDIILKIDNREVTKIDDILAYLESQKQVGDNVHLTIQRDN
                     AIRELDLVLGERPSADKIDSSLNDFPNRTPPQNGDGNYPEELYDECVRVAGESFCDFL
                     FRK"
     gene            complement(781..1167)
                     /locus_tag="VD694_02975"
     CDS             complement(781..1167)
                     /locus_tag="VD694_02975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11698.1"
                     /translation="MASSDNFGVEARMGIRAIEWMNTYSKEKNMNFNARLEGYQVSTK
                     NFGNFEMISWNGNWSDARKIIIKSSSKLSMKVIESGYHQKDNLLLSFFGLGKEFAKVY
                     KKGNYIGAIVLGVRSGKWYAKSEKLG"
     gene            1326..1922
                     /locus_tag="VD694_02980"
     CDS             1326..1922
                     /locus_tag="VD694_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HXW11699.1"
                     /translation="MSSEVNIRESPNHFIVLDAISRGMSNIGKISKVSKLSKTEIELI
                     VNDLIIQRLITSNEKRGFLGRKKIELKITETGMNLLGNKKKELQDKVKEMQKYYDNGN
                     RTQLESLMDSNRGWMPMMLFSGVMNILFFTSMMSLMGLAMSPMESSLAGSGEGGSADS
                     GSATAGDSSSDSSGADTQAGTDTGGFDGGGFDGGGFDF"
     gene            complement(2037..>2694)
                     /locus_tag="VD694_02985"
     CDS             complement(2037..>2694)
                     /locus_tag="VD694_02985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11700.1"
                     /translation="YEDIKKLFSLSFESQRPIHILLVGPPASAKTLFMLGCMKLDRSY
                     FTLGTHSTKSGMVDYLFEKRPRYLVIDEIEHMPIKDQTVLLSLMETGIIAETKHMKTR
                     NTQLKTWVFATSNDTNHMLTPLLSRFMVLHFRQYNFENFQDISIHMLGQEGIGRDIAA
                     EVASQVWHKMNSKDIRDCIKIAHLARSKTDVKWIVETIQKYSKASRVTKVDFTSKHID
                     "
BASE COUNT          857 a          455 c          530 g          852 t
ORIGIN      
        1 cagacgcagc tattaatcca ggcaattctg ggggcccgct gatcgacaca cagggtagcg
       61 ttattggaat caacactgca atattttcaa atacgggtgt ctattctgga gtaggatttg
      121 ccataccttc taacacaatt agtaaagttg taacttcgct tgttcaaaca ggttcatatc
      181 gtcatccata tatcggcata gttggcctaa gtctgactcc agatttgtcc aagcaaatcg
      241 gagtaagtca aactaaagga tttttaataa cgagtatcac agatggtagt cctgctgaaa
      301 aggcggattt aaaggctgga acaagtacga aaacctataa tggtagggaa attaatacgg
      361 gaggcgatat catattaaaa attgataaca gagaagtcac gaaaattgat gacatactag
      421 catatttgga aagtcagaaa caagttggag acaatgtgca tctcactatc caaagagata
      481 atgctattag agaattggat ttggtattgg gagaaagacc cagtgcggat aagatagatt
      541 cgtcattaaa tgattttcca aatagaactc cacctcaaaa tggagatggt aattatcctg
      601 aagaactgta cgatgaatgc gtccgagttg caggagaaag cttctgtgac tttttgttta
      661 ggaaatagtg ttctgattta ggatatcatg ttctgattta ggatatcatg ttctgattta
      721 gtctacgctt caatagagtt atctctgaat cagcgtatat attttgaatc atattttgaa
      781 tcatccaagt ttttctgact tcgcatacca ttttcctgat cgcaccccca aaactatggc
      841 tccaatatag ttacctttct tgtatacctt agcaaattcc ttgccaaggc caaaaaatga
      901 aagtagcaga ttatctttct gatggtaacc tgattcaata actttcatgc ttaatttgct
      961 actggatttg ataattatct tacgtgcatc agaccaatta ccattccatg aaatcatttc
     1021 gaaatttcca aagttttttg ttgagacctg atatccttct agccgtgcgt tgaaattcat
     1081 atttttctcc ttggaatatg tattcatcca ttcaattgct ctaattccca tccttgcctc
     1141 aaccccaaaa ttatcagaac tggccaatat tctgaattct tgaacactaa taattttaaa
     1201 ctttgtaaaa ttttatgatt tgaatttatg aacacaccgc gttgaggatt cgttgaagat
     1261 ttacatactt tagacaaaat atcaaaaacg aatgatttaa gtaaactaat gtgcttaaat
     1321 ttagtatgtc aagtgaagtt aacattcgcg aaagtcccaa tcatttcata gttctcgatg
     1381 caatatcaag aggaatgagc aatatcggca agatatcaaa agtgtcaaag ttatcgaaaa
     1441 ctgaaattga attaatagtc aatgatctta tcattcaaag attgataact agtaatgaaa
     1501 agagaggatt ccttggtagg aaaaaaattg aattaaagat tacagaaaca ggcatgaatc
     1561 ttcttggaaa caaaaagaag gaactacagg acaaagttaa agaaatgcag aaatattacg
     1621 ataatggaaa taggactcag cttgaatcat taatggattc gaatagagga tggatgccta
     1681 tgatgttatt ttcaggtgtt atgaatatac tgttttttac atcaatgatg tcgttaatgg
     1741 gtctggctat gagtcctatg gaaagctctc ttgctggcag tggtgaaggt ggcagtgcag
     1801 acagtggttc tgcgacagca ggcgatagca gctcggatag ttccggcgct gatacccaag
     1861 caggaactga tactggcgga tttgacggtg gcggatttga cggtggcgga tttgactttt
     1921 aaatcgcttc agcctcagat ttagatcgaa ttatgtggca tggctactaa aagttaaggt
     1981 tgtcattgcc agttcaaata ttgagatatt ttagtgcaga attatagtag aatagatcaa
     2041 tcgatatgtt tggaagtaaa gtcaactttt gtaaccctag atgctttgct gtatttttga
     2101 atcgtctcta caatccattt tacatcagtc ttggatctag caagatgtgc aatctttatg
     2161 caatccctaa tgtcctttga attcatcttg tgccatactt gggaagctac ctctgctgca
     2221 atgtctcttc ctatcccctc ttgaccaagc atatgaattg atatatcttg gaaattttca
     2281 aaattgtact gtctaaagtg tagcaccata aatcttgaaa gtaaaggagt aagcatatga
     2341 ttagtatcat tagaagtagc aaaaacccat gttttcagct gggtgtttct agtcttcata
     2401 tgttttgttt cggctataat gccagtttcc ataagactga gaagaactgt ttgatctttt
     2461 attggcatgt gctcaatttc gtcaattacc aagtatctgg ggcgcttttc aaataaatag
     2521 tctaccatgc cagatttggt actatgtgtg cctaaggtaa aataagagcg atccagtttc
     2581 atacaaccta gcataaacaa tgtttttgct gaagcaggag gaccaacaag caggatgtgt
     2641 ataggtcttt gtgattcaaa tgataaggaa aataattttt ttatgtcttc gtaa
//
LOCUS       DASPFX010000137         2607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1045533, whole genome shotgun sequence.
ACCESSION   DASPFX010000137 DASPFX010000000
VERSION     DASPFX010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1045533"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VD694_02990"
     CDS             complement(<1..192)
                     /locus_tag="VD694_02990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11701.1"
                     /translation="MHNPLKSKQNQKDPNRGSSTRGDSKLLTSRGSRVAIPRTAWKLL
                     IILSSIATMVMYAETMLIPA"
     gene            complement(214..741)
                     /locus_tag="VD694_02995"
     CDS             complement(214..741)
                     /locus_tag="VD694_02995"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HXW11702.1"
                     /translation="MSTFDYENNPGFIINRTARSLSRSLDIRLRNRVGITFAQWRVLV
                     LLTKIHDGLSQKEIAEGLGLEAPSLIPILDKLQNDGFIERRVDPNDRRNNRIYRSEKT
                     FEIWDTTLECANRVLTIALADLPEDKVLIMKEILERMWINLQANSELPNKIPGTLTDM
                     IDQKMVVRETPPSQQ"
     gene            complement(1077..1562)
                     /locus_tag="VD694_03000"
     CDS             complement(1077..1562)
                     /locus_tag="VD694_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11703.1"
                     /translation="MHEREFLHEVCISALSVSKKVSFAGIVDRNGKLLLGHEKKNADT
                     NRRRLLCYIGNYENKVVVSIYFKHLAPMLNEIVKKHFFDMKSNTLIYDSNTADREHAI
                     RIYEIDEFYVLDVASNIKLGFIPITESADKFLCVYLESHMVEMSNTSYHRIIASINRC
                     L"
     gene            complement(2113..>2607)
                     /locus_tag="VD694_03005"
     CDS             complement(2113..>2607)
                     /locus_tag="VD694_03005"
                     /inference="COORDINATES: protein motif:HMM:NF039195.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HXW11704.1"
                     /translation="GTDLSAFFHTPPLASNLVTFEGLGLMIKYPSNWERSKIGQDQVT
                     FIAPRESDSPSFPAGLGIKLHNISSADSTLESIAKEIITDLESDTQDFTLLSSSKSRL
                     NSFDAYEISFSATDDNDAKRTAMQIVVRPDNLVYVITYKSYPEKYESYLPVIQSMLDS
                     LKFL"
BASE COUNT          758 a          517 c          491 g          841 t
ORIGIN      
        1 agcaggaatc aacatcgtct ctgcatacat gaccatggtt gcaattgagc ttagaataat
       61 tagtaacttc caagccgtac gaggtatcgc gactcgacta cctctactgg tcaaaagttt
      121 agaatcccct ctcgtcgatg aacctctatt tggatccttt tgattttgtt tactttttag
      181 gggattatgc atttcagact gactactgca gacctattgt tgtgaaggag gtgtttcccg
      241 cactaccatt ttttgatcga tcatgtctgt caaggttccg gggatcttat ttggtagttc
      301 cgaatttgcc tgtagattaa tccacatcct ttccaatatt tctttcatga ttaggacctt
      361 gtcttctgga agatctgcca gcgctatggt gagcactcta tttgcacatt caagtgtagt
      421 atcccaaatt tcgaaggtct tctcggagcg atatattctg ttgttccttc tgtcgttagg
      481 gtctactctt ctctcaataa aaccatcatt ctgcagcttg tcaagtatag gaattaaact
      541 aggtgcttct aacccaaggc cttctgcgat ttccttctga gagagaccat catggatttt
      601 tgttaacaga acaagtactc tccattgggc aaaagttatg ccgactctgt tcctcagtct
      661 aatatctaga gagcgtgaaa gagatctagc agtcctgttt attataaatc cgggattatt
      721 ctcataatca aaggttgaca taggatgcta aggattagta tcctaatcat tagatataaa
      781 tctttagaca aatcgaggtt tctaagccag tacttcaggt agcagcttat gccggctcat
      841 ttcattgtct taggcgagat gaaattccct gcagtttcaa ttttgttgta cttgaacctc
      901 gagatacaaa agctgccccc ccttaataac taggatacca attccgtctc catttctttt
      961 gggagactga attttaagtc ttgattcata cagacttcaa cttcggaaga acgacataat
     1021 ttaaaacctc ggtctataca atacggtact tgaataatcc agaacttaaa aggaattcat
     1081 aagcatctgt taatagaggc tattatcctg tggtatgaag tgttggacat ttccaccata
     1141 tgtgattcca agtagacaca aaggaatttg tctgccgatt cagttattgg aatgaagccc
     1201 agtttgatat tgctagcaac atccaaaaca taaaattcat cgatctcgta aatccgaata
     1261 gcatgctctc tatcagctgt gttactatca taaatcaaag tatttgattt catatcgaag
     1321 aaatgctttt ttacaatctc atttagcatt ggcgcaagat gcttgaagta tatgcttacg
     1381 acgactttat tttcataatt accaatgtaa caaagtaatc ttcgtctgtt ggtgtcggca
     1441 tttttctttt catgaccaag cagaagttta ccattacggt cgactatccc cgcaaaactc
     1501 actttcttgc taacagataa cgcacttatg cagacttcat gaaggaattc tcgctcatgc
     1561 atttgctaag gcaagggtat tactgtgcca tgttaaatat taactatatg gtaatcgttt
     1621 agcagtagaa tcctacaaac attaaaatat accctaatgt ttatgatatt tttacgcata
     1681 ttgttgaatt attttgacgg agttgatatc atactttccg taattcgtgt caggatagct
     1741 aacaaatata atttaaattg ccagcgtggg accataagct ccttccacta acaatatatt
     1801 gtatagacac atcatatcat gattagagat tgaaagttac cgacgtatgg ggaaaggaat
     1861 ctgaaccaat atgtacctat tatcgttgca gacacaagtt ttctgtacat ggaactaatc
     1921 tctgtcgttg caagcatcca caaaacccag tagttggtgt cacgggtttg ctggagatgc
     1981 gatagcaagg cctgcggttc ttttggccag gtatacaaat atgcaacaat cataagcaac
     2041 aatagggatg atcactaatt attgatgatc tgatattttt aaatggatta agcagagcgc
     2101 taatcattgt catcacagaa attttagcga atctagcatt gactgtatta ccggcagata
     2161 tgattcgtat ttctctggat aggatttgta tgtgattaca tagaccagat tatcaggtcg
     2221 tacaactatt tgcattgcag ttctttttgc atcattatca tccgttgcac taaaggaaat
     2281 ctcatatgca tcaaagctat tcagtcttga cttactcgag ctcaagaggg taaaatcttg
     2341 agtatcactt tcaagatccg tgattatttc ttttgctata gattctagtg tggaatctgc
     2401 agatgaaata ttatgcaatt ttattcccag cccagctggg aaagaaggcg aatcactttc
     2461 gcgcggagct atgaaagtga cctggtcctg accaattttc gatctctccc aattgctagg
     2521 atatttgatc attagcccga gaccttcaaa ggtaaccaaa ttacttgcca agggcggagt
     2581 gtgaaaaaag gctgaaagat cagtccc
//
LOCUS       DASPFX010000138         3911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_927570, whole genome shotgun sequence.
ACCESSION   DASPFX010000138 DASPFX010000000
VERSION     DASPFX010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3911
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927570"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /locus_tag="VD694_03010"
     CDS             complement(<1..355)
                     /locus_tag="VD694_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HXW11705.1"
                     /translation="MSKDNEFDQRILEILRLDSRKSFVEIGKELGLSESAIRRRIKNL
                     VDDGSISRFTIEENSDKKTSAITLLSVGPTTDTNSVASKLQTIAGVKVIYEITGQYDV
                     AVILSSNSINEINSSI"
     gene            complement(342..1529)
                     /locus_tag="VD694_03015"
     CDS             complement(342..1529)
                     /locus_tag="VD694_03015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HXW11706.1"
                     /translation="MTVNEDSFLINLYQRFPVTIDRAQDATVWDIDGNEYIDCMGGYG
                     VAIIGHCNQEVIKAITQQMNKVMVCHMSTYNDSRLQFLSKLKSIAPEKLEKIFFSNSG
                     AESIEAALKFSRKYSQKTGIISMYGGYHGKTFGALSVTYNAKYRKSFNPLLDGVKFVP
                     FGDISSLTEAIDENTGTVILEPIQGESGIIMPPEGYVKAVRDLCTKKNLVLIFDEIQT
                     GLGRTGKMWAGQNWNAVPDIMCIAKGIASGIPAGVTFVKEEIANCMNLGEHSSTFAGN
                     PIACSAGNATIDTILREDLVTKASDTGTYFKNKLMELKQKHPIIRDVRGMGMMLALES
                     RFDIRDVLLDGIKKGLLMLYSGRTIIRLLPPLVMKKEQVSRAVDIMDEILTVEEKRRN
                     VKG"
     gene            complement(1526..2326)
                     /locus_tag="VD694_03020"
     CDS             complement(1526..2326)
                     /locus_tag="VD694_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[LysW]-aminoadipate/[LysW]-glutamate kinase"
                     /protein_id="HXW11707.1"
                     /translation="MIVIKFGGSVLYELHPSIIEDLHQISKNERMVLVHGGGNEVTNM
                     ATKLGKEQKFIVSPSGIRSRFTDKETAEIYTMVMSGKINKIIVKMMVEAGIKAVGISG
                     IDAGILRAIRKSKLTVLNEKGRKMIIEGGYTGKIQSVETSLLNILTEKGYLPVVSPIA
                     LSENYEFLNVDGDRAAAYIAGNLKADKVIFLTNVNGLHLDDKLVKSLTASQAKESMPK
                     IGFGMEKKILASTEALMLGAKEVIISSGKVLNPITSAISHEDCTVISN"
     gene            complement(2323..3378)
                     /gene="argC"
                     /locus_tag="VD694_03025"
     CDS             complement(2323..3378)
                     /gene="argC"
                     /locus_tag="VD694_03025"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HXW11708.1"
                     /translation="MIKVGVIGAAGYVGGELLRLLVVHPDVELSVLTSRQNAGEYVHR
                     VHPSLKGFIDLTFSPMELDKIVNQCDLVFVSVPHGNALSIVKDLYSTDIKIVDLSADF
                     RLKNPDDYVKWYGWEHPFPDLLSKSVYGIPEMHRNEIKDAKLVSCPGCMAVTSILALK
                     PLMENKLIDTNHIIVDSKIGSSGAGATDSTGTHHAMRYGVIRPYKPSKHRHTGEIEQE
                     LSIISDQKIKVSMSPHAVNLVRGILTTNHVFLNSPKSEIELWKAYRNSYKEEPFIRLI
                     RDKKGLYKFPDPKFVVGSNFCDVGFDMDENTNRVVALSASDNLMKGAAGSAIQNMNLM
                     CGFKETDGLKYTPLTPV"
     gene            complement(3488..>3911)
                     /locus_tag="VD694_03030"
     CDS             complement(3488..>3911)
                     /locus_tag="VD694_03030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysine biosynthesis enzyme LysX"
                     /protein_id="HXW11709.1"
                     /translation="QSMAEMMLDSRQENDNSFSRIYYFQELVDRPSRDIRCIVIGDRV
                     IASVFRHSSENEWRTNVAVGGRTEAAPLTSELQEIVLSAANAVGGGILGVDLMEDKER
                     GYLVHEVNNTVEFRGASMVCKSDIAGAMTDYLVKLSSK"
BASE COUNT         1086 a          888 c          603 g         1334 t
ORIGIN      
        1 caatactgct attaatttcg ttaatagaat tggatgataa tatcaccgct acatcatact
       61 gtccggttat ttcatagata accttgactc ctgcaatagt ctggagtttc gacgcaactg
      121 agttcgtgtc agtagttgga cctactgaga gcaatgttat agcgctggtt ttcttgtccg
      181 aattttcttc aattgtgaac ctggatatcg agccatcatc aactagattc tttattcttc
      241 gtcttattgc agattcagac aaacctagtt ccttacctat ttccacaaat gattttctag
      301 aatccaatct gaggatctcg aggatccgtt gatcaaattc gttatccttt gacatttcgc
      361 ctcttctcct cgacagttag aatctcatcc attatatcaa cagctctact gacttgctct
      421 ttcttcatta ccaaaggagg cagtagtcta attattgttc ttccagaata taacatcaac
      481 aatcctttct ttatcccatc caataataca tcacgtatgt caaaacgtga ctctaaggca
      541 agcatcattc ccatacctct tacatccctt ataataggat gtttttgttt taattccata
      601 agtttgttct taaaatacgt acctgtatct gaggccttgg taaccagatc ttctcttagt
      661 atagtgtcaa tggtggcatt tccagcagaa catgcaatag gatttccagc gaaagttgaa
      721 gaatgttctc caaggttcat acagttggct atttcttcct ttacaaatgt tacacctgcc
      781 gggataccag aagcaatacc ttttgctata cacattatat ctggtactgc attccaattc
      841 tgacctgccc acatcttacc tgtacgtcct aatccggttt gtatttcgtc aaagataaga
      901 actaaatttt tctttgtaca caaatcccta actgccttaa cataaccttc tggtggcatt
      961 attattccag attctccctg aattggttct aaaataacag ttccagtgtt ttcatctatt
     1021 gcttctgtta atgacgatat atccccaaac ggaacaaatt tcactccgtc taataatgga
     1081 ttaaatgact tgcgatattt agcgttgtat gtcactgaca atgctccaaa agtctttcca
     1141 tgataaccgc catacattga gattattcca gttttctgtg aatattttcg tgagaatttt
     1201 aatgcagctt cgattgattc tgcaccacta ttactgaaga aaattttctc caacttctca
     1261 ggtgcaattg attttaactt tgaaagaaat tgaagtctgc tgtcattata agtagacata
     1321 tggcatacca taactttatt catttgctgg gttattgcct ttatgacttc ctgattgcaa
     1381 tgtcctatta tggccactcc ataacctccc atacaatcga tgtattcgtt accatcaata
     1441 tcccaaacag ttgcgtcttg tgccctatca atagtaacag gaaatctttg ataaagatta
     1501 atcagaaatg aatcttcatt aacagtcaat ttgaaatcac cgtacagtcc tcatgactta
     1561 ttgcacttgt aattggattc aacactttgc ctgatgaaat tatcacttct tttgctccca
     1621 acattagcgc ttctgtacta gccaatatct ttttttccat tccaaatccg atttttggca
     1681 tggattcttt ggcctggctt gcagttaaac ttttcactaa tttgtcatcc aaatgcaaac
     1741 catttacatt tgtaagaaaa ataactttgt ccgccttcaa gtttccagca atgtacgctg
     1801 cagctctatc tccatcaaca ttcaaaaatt cataattttc gcttaacgct atgggtgaca
     1861 ctactggcaa atatcccttc tctgtcagta tatttaggag tgaggtttca acagattgaa
     1921 ttttcccagt atagccacct tctatgatca tcttgcgtcc cttttcattc aatacagtaa
     1981 gtttggactt tctaatcgcc cgcaggattc ccgcatcaat acctgaaatt cccactgcct
     2041 ttattcctgc ttctaccatc atcttgacaa ttatcttatt aattttacca gacatgacca
     2101 ttgtataaat ttccgctgtt tccttatcgg tgaatctact tctaatccca ctgggggaaa
     2161 cgatgaattt ctgctctttg ccaagttttg tggccatatt agttacttcg ttaccaccac
     2221 catgtactag aaccattctt tcattttttg aaatttggtg caaatcctct attattgacg
     2281 ggtgtagttc ataaagcaca ctcccaccaa atttgatgac gatcataccg gtgtcaatgg
     2341 ggtatatttt agtccatctg tctctttaaa tccacacatg aggttcatgt tctggatggc
     2401 agaaccagct gcacctttca ttaaattatc ggaagccgaa agtgccacta ctcggttcgt
     2461 attttcatcc atatcaaaac ctacatcaca gaaattggac cccactacaa atttaggatc
     2521 tgggaattta tacaagccct ttttatctct tatcaatcta ataaaaggtt cttctttgta
     2581 cgagtttcta taagctttcc atagctcaat ttctgacttg ggtgaattaa gaaatacatg
     2641 attagtagtc aatattcctc ttaccaagtt aactgcgtga ggactcatgc ttaccttgat
     2701 tttttggtcc gatatgatgc ttaattcctg ttctatttcg ccagtatgtc tgtgtttgga
     2761 aggcttgtaa ggtcttatta ctccatatct catggcgtga tgtgtgccgg tactatccgt
     2821 tgcacctgct ccagaggatc caattttgct atcaactatg atgtgattcg tatctatcaa
     2881 cttgttctcc atcaaaggtt tcaatgccaa tattgacgtt accgccatgc atccaggaca
     2941 tgaaactaat tttgcatcct tgatttcatt tctatgcatt tctggtatgc catatacaga
     3001 cttggaaagt aaatcaggaa acgggtgttc ccatccatac catttgacgt agtcatctgg
     3061 attcttcaat cgaaagtctg ctgataaatc aactatcttt atgtcagtac tatatagatc
     3121 cttgacgatg ctcaacgcgt taccatgagg aactgataca aataccaaat cacattgatt
     3181 tacaattttg tccaattcca tgggcgaaaa agttagatca atgaaaccct tgagacttgg
     3241 atgcactctg tgaacatact ctccggcatt ttgtctagaa gttagaacac ttaattctac
     3301 gtccgggtga actaccaaca aacgcaaaag ctctccccct acatatcctg ccgcaccaat
     3361 tactcctact ttgatcaatt tcttctctta ccaaaatttc tactatgaca tcttatgaat
     3421 tttgttatca cagacgcaaa gatttggctt ccaataaaga ctaatgaccc gaatttatat
     3481 tgtaaatcta ttttgatgaa agcttgacca aataatcagt cattgcgcct gctatgtcag
     3541 atttacatac cattgatgcc cctctaaact ctacagtgtt atttacttcg tgtacaagat
     3601 atcctctctc cttatcttcc ataagatcaa cgcccaaaat acctccacct actgcatttg
     3661 cggcacttaa cacgatttct tgtaattctg aggttaaagg ggccgcttct gttctgccac
     3721 caacagccac attcgtcctc cattcgtttt ctgatgaatg tctaaaaacg gacgcaatta
     3781 cccgatctcc tattacaatg catcgaatgt cacgtgaagg tcgatcaact aattcttgga
     3841 aataataaat ccttgaaaat gaattgtcat tttcctgtct tgaatctagc atcatctcag
     3901 ccatggattg g
//
LOCUS       DASPFX010000139        15204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1444457, whole genome shotgun sequence.
ACCESSION   DASPFX010000139 DASPFX010000000
VERSION     DASPFX010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 15204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1444457"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VD694_03035"
     CDS             <1..547
                     /locus_tag="VD694_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HXW11710.1"
                     /translation="SLLQKIPKHMHVFLIPGNHDPGRRALPQTALTNLRDYQPLENFS
                     IIGNPSVVELNKVKLLMFHGQSLDDVIATVPGLSYSKPVEAMKILLKSRHLSPIYGNR
                     TPIAPESEDMLVIEDVPDIFHAGHVHMTEVGRYKGTLIVNSGAWQSQTRFQQTMGITP
                     TPGICILVNLGNLQSFKKDFN"
     gene            complement(540..1763)
                     /locus_tag="VD694_03040"
     CDS             complement(540..1763)
                     /locus_tag="VD694_03040"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW11711.1"
                     /translation="MDDDILDTIFDSAIKNKNIIKNRQVLTIDYVPDKLLFRTKESTA
                     IAQSLSVILKKGRPSNLLIFGKPGTGKTAVVKNVIDHLYNKTKQLDINLRVPFINAKN
                     SNTPYKILYEIAELLGINKEERKMQVYFTGLSMSEATDRILDFVRRRSIKVVLVIDEI
                     DSLVNRKGDDILYNFTRANERISSDQFISLIGISNSLTFKDKLDPRVKSSLSEEELVF
                     NPYTIEQLKQILIDRCKLAFYDNVIPIGVINLCAAIAGRETGDARKAIDLLRVAAEIA
                     ETSMTLKISEEHIRNAQQKIDSDTNFEILRNSTLHTKLVILAIIKSKNGSTGEVYTIY
                     QDFCLRIQQEALTQRRMTQIVGELDQLGLITTNIVNQGRYGRTQRIKLHIPISSVKEA
                     IKNDPILSPFIGDIN"
     gene            2055..2720
                     /locus_tag="VD694_03045"
     CDS             2055..2720
                     /locus_tag="VD694_03045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11712.1"
                     /translation="MNQPLYFDWKIFRQGRKKNDNYRNMIHPNSNTDSELTKAELLVN
                     LLITAIVKCHVILCADLSTARRKIKIEMEDENGEKYNLTLQGTITKEKLMNVIEFVQL
                     FDKNSNDGSFDGSLERKESETKLGSKIWNLIIENFRYHTFTSSDILRIYHDLYYESIQ
                     LSVISIYLSRFYFKKQLNRSKNGKQWIYTLNKENLNNSRENYDKPNDSNLLSLPTVYD
                     LHL"
     gene            complement(2668..3243)
                     /locus_tag="VD694_03050"
     CDS             complement(2668..3243)
                     /locus_tag="VD694_03050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11713.1"
                     /translation="MISITLFVLSFVAFFYFGFFRDSKEREEENDKFKDMLIEGYFHK
                     FDEYNEIISDLRTKLDMIQMKVNSVNNSGMETVDNGDIYSNKSRNISHSMIPVTNVTN
                     DVIVNQRKDEEKDELRLSTVDSILKMLEVPLTSREIQRRINKSREHTSRLLKKLYSEN
                     IVMRDGSSRPFKYKITNEGRKLLEGTANSSR"
     gene            complement(3330..3698)
                     /locus_tag="VD694_03055"
     CDS             complement(3330..3698)
                     /locus_tag="VD694_03055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11714.1"
                     /translation="MENSKLNYASILNHFIANSILTEKQTSIIYNKITKSKPDKKMTS
                     GAYYRQLGQCRTKIRKIVYTLLLLRLFSVLDAGTFSVLDQLNNQLNVMLNKTSDEIDG
                     SMLNNVTSLIDDVIAKLVLI"
     gene            3817..4563
                     /locus_tag="VD694_03060"
     CDS             3817..4563
                     /locus_tag="VD694_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0006650 - glycerophospholipid metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HXW11715.1"
                     /translation="MMEIQSTEKYILNEIKKQKTLCFPLIDSENTSKTMEIAKRLEQL
                     GASAILVGGSSTSDQIELSNFVTELKSNVKIPIILFPGNITGISPAADAILFSSLLNS
                     ENPYYITGAQAQGALVVNKHQIEAIPTGYLIVGDGSTAWFIGQARSIPFSKANIAVMY
                     ALAALYMGMRFLYLEAGSGASQNIPPEMVSIVRKFYKGILIVGGGINSAETAKKISDA
                     GADIIVIGTMIEREKDWEAEFVNIMKAIRN"
     gene            4560..8051
                     /locus_tag="VD694_03065"
     CDS             4560..8051
                     /locus_tag="VD694_03065"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HXW11716.1"
                     /translation="MSSNTKEINNTEIPSTYLQYHKNISQYIENSISTAQAAKKNGLD
                     ISEKVESQIGYDLPDRIAKIHEIDISNRLRTLLPKLGKELTALKISEEIVLGKFGGTT
                     IEEKLNNAVRVGLSVVTEGVTVAPLQGIYDVKIKTNANRSQYLSVSFAGPIRSAGGTE
                     AAVTMLIADHVRKVIGLDKYIANSFDDEISRYVEELRIYEREVGSFQFKVSDKDVMHC
                     IDSLPVEIDGVDTDPVEVIGNRNLERVATNRVRGGALRVMNDGLIGRSRKLLKIVETL
                     KLEGWDWLKNLEGAIQTPEDDTVSHRMTEVITGRPVLSMQKKIGGFRLRYGRSCNTGF
                     STIGIHPTIPILLNYAIAVGTQIKIDAPGKASTIALVDSIEPPIVRLSDGSVMKIKTV
                     DSAKSVANKITKILYLGDILISYGDFLENNTQLLPSSYVEEIWALELDDKLSKTNPNS
                     YFTSFESERLIELTHYPLEKRPSVTEAFKISQHFDIPLYPGYVFYWSALTEDEFNTLI
                     VNLLEHKEITIDTTEKLFTNGSKLKLIFEKLGILHSPCLDNSKIRIDDPDQLYILSML
                     TKGCLEYGQDLDKFLSTIPTDFDQSNVKMHILDRVSKLLKVSIKEKFSSSIAVRVGRP
                     EKAADRKMKPPVHVLFPIGTNGGPTRDILKAMQKPLYVEIANRICTNCKSPSLSVCCQ
                     DCSATTPIRIMCSSCKYEVNGDEPVEVCPVCRNRLKTHSPTSYPLKLAVEKAKKHLNI
                     QPIEPLKGVKALMGKNRCAEPLEKGILRQKHNLYTFKDGTIRFDATNEPLTHFKPKWI
                     KTDNAKLKDLGYLKDHVGNEFESSEQLLELFIQDIIIPIHAAEHLVKIAQFVDEELTR
                     FYGLEAFYKINSIDDLIGHLIVGLAPHTSVGIIGRVIGFVNSQVCLGSPIWHSAKRRD
                     CDGDADSIMLLMDIFLNFSKEYLPDRIGGLMDAPLLIQPLVFPHEVQRQAHNIDVDEK
                     YPLDFYRSSWNMGKTNVIENIDLVKKRLGKANQFFDYKFTHPTDNIMLDESQSLYSTL
                     NTMEEKLKMQITTAKLINAVDADEVMAMVLTTHILPDIMGNLRAFSSQSFRCTKCGQK
                     YRRMPLVGKCLECHHELLQTVTRGSVEKYVQTALNICSEFKINEYLTSRIDTLQAELN
                     LLFKEEVKDQHTIIDFI"
     gene            8260..8937
                     /locus_tag="VD694_03070"
     CDS             8260..8937
                     /locus_tag="VD694_03070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11717.1"
                     /translation="MRQKTPHIAIFDTFKTKKNKFTGEAKRQRGIITHLALEKNPELK
                     TRTAIAHAIAKSNGILWQNIYSGIFKDLDEVLIPSGVVREAGRLPLRRGPKALQLEGV
                     PFYELTETGILVASSIEELGNIRMTILESYFNNMNSNISGNDVMKKSILLLLKTIPSF
                     VIKIISAYIYSYTTGEIDTITPITIERFRSVLKEQISIEKEFIESYDVLSQTQKLLLK
                     DFFKILT"
     gene            9056..9976
                     /gene="rnz"
                     /locus_tag="VD694_03075"
     CDS             9056..9976
                     /gene="rnz"
                     /locus_tag="VD694_03075"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HXW11718.1"
                     /translation="MADMKIVFLGTSAAIPTEKRCLSSIAVKRGGELLVFDAGEGMQR
                     NFLQAKLGINKKMKIFITHLHIDHCLGLMGFFQTMSLLGRTKKIDIYGESRLREFIHE
                     NFRIINIELAYEIVIHVIDKEGVIASEDDYQITCCRATHSIPAFSFCINEHPRPGVFS
                     VEKASKLSIPKGDLYRRLQHGEDVFVDGKLIKSNQIVGPKRKGRKIGISGDTRPSTEL
                     KDFFDSCDILIFESTYNHDYQNKAIETFHSTSTEAALLAKESNCSKLILTHFSSRYDD
                     LNILLEEARTIHSNVDLAEDMKTFYIPYTE"
     gene            10042..10932
                     /gene="prs"
                     /locus_tag="VD694_03080"
     CDS             10042..10932
                     /gene="prs"
                     /locus_tag="VD694_03080"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HXW11719.1"
                     /translation="MQKNNTVIISDNRNSSLAKNISLDLNVPYMNADLRVFADGESKI
                     RLDNVAKKNCIIIHSTYPPTDQHLMQLFMIIYKCKQDGASDICVVNPYLAYARQDKVF
                     VNGEIVTINLIGRILASLGTTKLVTIDMHSPGSLNYSFEIVDLSAIPSLASYVKKNIT
                     LNKPIVISPDEGGIQRAKKFAGVIGIDMLSLIKTRDRFTGDVSISLSDQQPLENRDAL
                     IVDDMISTGNSIVKATEILKKNNIGNVYVFCTHALLLDDAKEKLLKAGIKEIISTNSV
                     PNKFAKVDLSSVISNYFSDH"
     gene            complement(10958..13075)
                     /locus_tag="VD694_03085"
     CDS             complement(10958..13075)
                     /locus_tag="VD694_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HXW11720.1"
                     /translation="MSRVRIGVDVGGTFTKSVAIDMNTGRIIGKVTVPTSHFSQEGVS
                     TGIVESLIKLIRKEGINESNIELISHSTTQAVNALLEGDTTKVGIIGMGVSLEKNDIM
                     KRTNLGNVKLGPNKYLNTCYRFLDTSKFLDEKEISQVIKELKDEGATVLIVSEAYGVD
                     DPSNELYVMQKSDLPATAGHELTGIYGLEIRTLTAAINASILLKAIGTAKYVEKAVRQ
                     QEISAPLTIMKGDGGVTDMNTFKTKPILTVLSGPAASVAGALLHLKILNGIFIEVGGT
                     STNICVIKNGKPEVKYVTIMDHPTCIKSLDVRVVGIAGGSLVRWSGKKITDVGPRSAH
                     ISGLKYSCFAEPQDLEGGQIVTFMPREGDPIDYIGIEAGAGKRFAITTTCAANALGII
                     PDNDYAKGNKESAQLALSILGQRLGMNMEEVANKILDISVKKILPAIRTLIREYKLKD
                     DKFVLIGGGGGASVLVPLVAHKLQCQFKIADNSEVISSIGVCTASIREEREKIIDNPT
                     PDDISLFIQEVEKIAISKGALPESISTQSEYISEKSLLRVTVNGNMKLDVSANDAKEI
                     GDEEAEVLACELFGINEGVHRIFNMKDYYIFACEIHKKKLFLKSRKQPVLVLDKFGHV
                     RVSIENADIYSGSPQEMKEKIESLVNEGGLSKDDLAPQIHIVDGKRILDFSSLSSTAH
                     VLKAVTDELDRTVNNQVTIIIKV"
     gene            complement(13192..13764)
                     /locus_tag="VD694_03090"
     CDS             complement(13192..13764)
                     /locus_tag="VD694_03090"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW11721.1"
                     /translation="MSRIVVTGNPGVGKRTISSLLSKRLGFKLINLNEFVIEKKLVFP
                     DKTLDAYDVHTKKASLLLRKEIKQYDDVIISGHLAPYLLMSDQADLVVVLRRSPQYLL
                     QTFKERKYTILKTRQNITSEVLGITLYDSIKKFGKQKIIEFDTTKTSSKQIIKRLIEA
                     LNDDSKRRMENIDWMPTLMHQQDILSLISY"
     gene            13882..15144
                     /locus_tag="VD694_03095"
     CDS             13882..15144
                     /locus_tag="VD694_03095"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HXW11722.1"
                     /translation="MKITILGSGKEVGRSGILVTSNNTNILLDYGVLLKREPSFPIHV
                     RPKDISTVVLTHAHLDHSGYIPSLFLSNSNISVLGTNPTFELSELLIEDMIKISGFYL
                     PFEYADLNNMMSHARTLQYKEKNLLNNMEITLHETGHILGGSSIMVESEGKRIFYTGD
                     INKRGSKLLRPADLDLPEVDILIIESTYSQTEQAPREESEKSLLQFAYDVVERGGTLF
                     IPAFSVERAQEIACVLKVNGFKHKISMDGMALKANEIMLRNPSFLRDPEGFKKILSEI
                     EWVKGWNRRKHLIKEPGIIISPAGMLVGGTALFYLQEIAKNPNNGIALVSYQGKGTPG
                     RLLLEKGLVSYNGKTKKSLAEVKHYEFSGHSSRTELFEIVSKIKGNPRVLTVHGDDMS
                     CTTFASEIKEKYGFDAIAPDNGQIVEVN"
BASE COUNT         5068 a         2694 c         2632 g         4810 t
ORIGIN      
        1 atccttgcta caaaaaattc caaagcatat gcatgtattc ctaatcccgg gaaatcatga
       61 tcctggaaga cgggctttgc ctcaaactgc tttaacaaat ttgcgagatt atcaacctct
      121 tgaaaatttc agtattattg gcaatccgtc ggttgttgaa ttgaacaagg ttaaattact
      181 aatgttccat ggacaaagct tggatgatgt tatagctacg gttcctggat taagctattc
      241 taaacctgtt gaagctatga aaattttatt aaaatctaga catctgtcac caatatatgg
      301 taaccgtaca ccaatagctc ccgaatcaga ggacatgctg gtcattgaag atgtaccgga
      361 tatttttcat gcagggcatg tgcatatgac agaggtagga agatacaaag gtacattgat
      421 agtaaattct ggagcatggc aaagccagac aagatttcaa caaaccatgg gaattactcc
      481 aacccctgga atttgtatac tggttaattt aggaaacctt caatcattta agaaagattt
      541 caattgatat caccgataaa aggggataat atcggatcgt ttttgatagc ttcttttaca
      601 gatgagatag gaatatgcag ttttatcctt tgggttctgc catagcgacc ctggttgact
      661 atattagttg ttattaatcc tagttgatcc agttcgccca caatttgtgt catccttctt
      721 tgagttaacg cttcttgctg tattcttaag caaaaatctt gatagattgt ataaacttct
      781 cccgtgctac cattcttgga ttttattatt gcgagtataa ctaatttggt gtgtagagtt
      841 gaattcctca ggatctcgaa gttggtgtcg ctgtcaattt tttgttgtgc atttctaata
      901 tgctcttcgc taattttcaa tgtcattgat gtttctgcta tttctgcagc tactctcaat
      961 agatctatgg cctttcgagc atcaccagtt tctctaccgg caattgcagc acacaaattg
     1021 attacaccaa ttggaataac gttatcatag aaggcaagtt tgcacctgtc aattagaatt
     1081 tgctttaatt gttcgatagt gtaaggatta aaaaccaatt cctcttcgct caaactgctc
     1141 tttactcgtg gatctagttt atctttgaat gttaagctat ttgaaatacc tatcaaacta
     1201 atgaattgat ctgaagaaat cctttcatta gctcttgtaa agttatacag gatgtcatca
     1261 ccctttctat taacaagaga atctatttca tcgatgacaa gtacaacttt gatggacctg
     1321 cgtcttacga aatcaagaat tctatcggtt gcttcgctca tagaaagtcc agtaaaataa
     1381 acctgcattt ttctttcctc cttattgata cccaataatt ccgcaatttc gtacagaatc
     1441 ttgtatggtg tgtttgaatt ttttgcattg ataaatggaa ctcttagatt aatgtctaat
     1501 tgtttggtct tgttataaag atggtcaatt acgtttttca ccactgctgt ttttccagtc
     1561 cctggttttc caaaaatcaa cagattagaa ggacggcctt tttttagtat aacagataat
     1621 gattgcgcga ttgctgtact ttcttttgtc ctgaataaca gcttatcagg tacgtaatca
     1681 atagtcaaga cctgtctatt cttgatgatg tttttgtttt taatcgcgct atcaaaaata
     1741 gtgtctagga tgtcatcatc caaattcata cacctcagac acccctcttt ttcttctgta
     1801 tctcaatata ataaattcat ttagtaagtg ggatgtatat aaaataaaaa cgcctaaatc
     1861 aattttgttt catttgtttg ttaattgttg tatcttgtaa atatggctag aattcaaacg
     1921 tatcttcaaa tagaaatgca ggggtggaac taacaattgt taagtttgtt aatttaatga
     1981 aaataaaaaa tactgaaaat aaccccttta tttccactgg aggctaatta acagaaatca
     2041 acattgttaa gaagatgaat caaccccttt atttcgactg gaaaatattt agacaaggca
     2101 ggaagaaaaa cgataactac agaaatatga tccacccaaa ttcaaacacg gatagtgagt
     2161 taacaaaagc tgagctctta gttaacttgt taatcactgc aattgttaag tgtcatgtga
     2221 tattatgtgc cgatctgtca actgcgagga ggaagatcaa aattgaaatg gaagacgaga
     2281 acggagaaaa atacaatttg accctacagg gaaccataac aaaagaaaag ctaatgaatg
     2341 taattgaatt tgtgcaacta tttgataaaa actccaacga tggaagcttt gacggaagtc
     2401 ttgaacgtaa agaaagtgaa acgaagttag gttccaaaat atggaattta attattgaga
     2461 attttagata tcacacattt acgtcctctg atatactaag aatttaccac gatctgtatt
     2521 acgaatctat tcaattaagt gtcatctcaa tttacttgtc tagattttac ttcaagaagc
     2581 aactcaatag atcaaaaaat ggcaaacaat ggatatatac tttgaacaag gagaacctga
     2641 ataattctag agaaaattat gataaaccta acgactcgaa tttgctgtcc cttccaacag
     2701 tttacgacct tcatttgtaa ttttatattt gaaaggccta ctactcccat ccctcattac
     2761 aatattttca gaatataatt tttttaataa ccgagatgta tgttcacgtg acttgttaat
     2821 tcttctctga atttctctag atgtcaatgg tacttcaagc attttcagga ttgagtcaac
     2881 agtactgagt cgcagttcat ctttttcttc atcttttctt tgattgacaa tcacatcatt
     2941 tgttacattt gtcacaggaa tcatagaatg tgatatattt cgtgacttgt tagaataaat
     3001 atcaccgtta tcaactgtct ccatcccact gttattcaca gaattcacct tcatttgtat
     3061 catgtccaat ttggttcgca aatccgaaat aatctcatta tattcgtcga atttatgaaa
     3121 atatccttca atcaacatat ctttgaattt gtcgttctcc tcttcacgtt cttttgaatc
     3181 ccggaaaaaa ccaaaataga aaaaagccac aaatgataac acgaatagtg tgattgagat
     3241 caagatatct gataatgtat attgcaaatt aagatcaaac atattcatgt gatatcatgt
     3301 gatttagtag tgtatttatt aatatttttc tatatcagaa ctaactttgc tatcacatca
     3361 tcaatcaaag aagtgacatt gttcagcata cttccatcta tttcatcact tgtcttattt
     3421 aacatcacat tcaattgatt atttagttga tccaatacag aaaatgttcc agcatctaaa
     3481 acactgaaca gacgcaacag caataatgta tagacaatct ttcttatttt cgttctacat
     3541 tgtcctaatt gtcgataata cgcaccggaa gtcatctttt tgtcgggttt cgactttgta
     3601 attttgttat aaataattga tgtttgtttt tcagttaata tagaatttgc aataaaatgg
     3661 ttcaaaatag atgcataatt taatttacta ttttccattt actatacaaa tttgtatagt
     3721 actgatatta taacttattg tattcaaatt actctccagc aattgtctaa actctctaat
     3781 gagactatta ttatacgagt aattactttg tgagaaatga tggaaataca aagcaccgaa
     3841 aaatacattc taaacgaaat caagaaacaa aaaaccttat gctttccact tatcgattcc
     3901 gaaaacactt caaagaccat ggaaattgct aaaagattag aacagctagg ggcttcagca
     3961 attctagtcg gtggctcatc aacatcggat caaattgaat tatccaattt tgtgacagag
     4021 ttaaagagta atgtcaagat ccccatcatt ttgtttccag gaaatatcac aggaatatca
     4081 ccagctgcag atgcaatttt attcagctca ttacttaact ctgaaaatcc ttattacatc
     4141 acaggcgccc aggcgcaagg ggctttggtc gtcaacaaac atcagatcga agccattcct
     4201 actggctacc tcatagttgg tgacgggtcc actgcgtggt tcataggtca agccagatcg
     4261 attcctttca gcaaggcaaa tatcgctgtc atgtacgcgc tggcagcttt gtacatgggt
     4321 atgcgtttct tatatctcga agcaggctca ggagcttcac agaatattcc accggagatg
     4381 gtgagcattg taagaaaatt ctacaaggga attttgatag tcggtggtgg aatcaattcg
     4441 gctgagacag ctaaaaaaat atcagatgcg ggtgcagaca ttatcgttat tggaaccatg
     4501 attgaaagag aaaaagattg ggaagcagaa tttgttaata ttatgaaagc aataagaaat
     4561 tgagtagcaa taccaaagaa atcaataaca cagaaattcc ttcaacttat ctacaatatc
     4621 acaagaatat ctcccaatac attgaaaatt ccatctctac cgcacaagca gccaaaaaaa
     4681 acggtcttga tatctccgaa aaagtagagt cccaaattgg ttatgactta ccagacagaa
     4741 tagcaaaaat acatgaaatc gatatttcaa atcgattaag aacacttctt ccaaaattag
     4801 gaaaagaact aactgcacta aaaatatccg aagaaattgt tctgggcaaa tttggaggaa
     4861 ccactattga agagaaacta aacaacgcag taagggtagg actatcagtt gttacagaag
     4921 gtgttacagt tgcacctttg caggggattt atgatgtcaa gataaagaca aatgcgaata
     4981 gatctcaata tttgtccgtt tcctttgcag ggccaataag atccgcagga ggaactgagg
     5041 ctgcagtaac aatgcttatt gcagatcatg tcagaaaagt tattggatta gacaagtata
     5101 ttgcaaattc atttgatgat gaaattagta gatatgttga agaattaagg atttacgaaa
     5161 gggaggtagg cagctttcag ttcaaggttt ctgataagga cgttatgcat tgtatagatt
     5221 ctcttcccgt agaaattgat ggggtggaca cggaccccgt agaagtaata ggtaacagaa
     5281 atctggagag agttgcaacc aatagagtcc gtggtggcgc tttaagagta atgaatgacg
     5341 gtttgatagg tagaagccga aagctattga agattgtcga gaccctaaaa ttggagggat
     5401 gggattggct caaaaatctc gaaggtgcta ttcaaactcc agaagatgat acagtatctc
     5461 acaggatgac agaagtcata actggaagac ctgtactttc aatgcagaaa aaaatcggcg
     5521 gtttcagatt gcgttatgga agaagctgta atacaggatt ttctactatt ggaattcatc
     5581 caacaattcc gattttacta aattatgcaa ttgctgttgg tacacaaata aaaattgatg
     5641 caccaggtaa ggcttctact atagcacttg ttgacagtat cgaaccacct attgtaagac
     5701 taagcgacgg tagtgtcatg aagataaaaa cagtagattc tgcaaaatct gtagccaata
     5761 agattacaaa aattctgtat cttggagata ttttgattag ctatggcgac tttctcgaaa
     5821 acaataccca attacttccc tcatcctatg tagaagaaat ctgggctctt gaactagatg
     5881 ataagctgag caaaactaat ccaaactcat acttcacaag ttttgagagt gaaagattga
     5941 ttgagttgac acattatcca ttggaaaaaa gaccatctgt tacagaagca ttcaaaatca
     6001 gtcagcattt tgatattcca ctttatcctg ggtatgtatt ttactggagt gctttaacag
     6061 aggacgaatt caataccttg atcgtcaatt tactagaaca taaagagatt acaatagaca
     6121 ctactgaaaa gctctttact aatggttcaa aactaaagct aatttttgaa aaacttggga
     6181 tattacactc accttgtctt gataacagca aaataagaat agatgatcca gaccaacttt
     6241 acatcctaag tatgcttaca aaggggtgtc tggaatatgg tcaggacctt gataaattcc
     6301 tatcaaccat tccaactgat tttgatcaga gtaatgtaaa aatgcatata ttagatcgtg
     6361 tttccaagtt actaaaggtt agtatcaaag aaaaattctc ttcttcaatt gctgttcgtg
     6421 tgggtcgacc agaaaaagca gctgatagaa aaatgaaacc tccagttcat gtcctattcc
     6481 ctatagggac caatggcgga ccaacaagag atattctgaa agcaatgcaa aaaccgcttt
     6541 acgttgaaat tgcaaacaga atttgcacca attgtaaatc gccctcactt tcagtttgtt
     6601 gccaggattg tagcgctact actccaatta gaataatgtg ttccagttgc aaatacgaag
     6661 ttaatggtga tgaaccagtc gaagtttgcc ctgtttgcag aaatcgttta aaaacacatt
     6721 cgccaacaag ttatcctctt aaactcgctg ttgaaaaagc aaagaagcat cttaacatac
     6781 aaccaattga accattaaaa ggagttaagg ctttgatggg taaaaacaga tgtgcagaac
     6841 cactggagaa aggaattctt agacagaaac acaacctcta tacattcaag gatggaacca
     6901 tccgttttga cgccacaaat gagcccttaa ctcacttcaa gcctaaatgg attaaaacag
     6961 ataatgcaaa actaaaggat cttggatatc taaaagatca tgtaggcaat gaattcgaat
     7021 catcagaaca attactagaa ttattcatac aggacataat aataccaatt catgcagctg
     7081 aacatttggt aaaaattgct cagtttgtag atgaagaact gactcgattt tatgggcttg
     7141 aagcattcta caagataaat tcgatagatg atctaattgg acacttaatt gttggtctag
     7201 caccacatac ttcggtagga ataataggta gagttatcgg atttgtcaat tcccaagtat
     7261 gtcttggttc accaatctgg cattctgcta aacgaagaga ttgtgacggc gacgcagatt
     7321 ctataatgct attgatggat atttttctaa atttttcaaa ggaatattta cctgatagga
     7381 ttggtggatt aatggacgcg ccattactta tccaaccctt agtatttcca catgaagttc
     7441 agagacaagc ccacaacatt gatgttgatg aaaaataccc attggatttc tacagatctt
     7501 cttggaatat gggaaagacc aatgtaatag agaacattga tcttgtaaaa aagcgtctgg
     7561 gaaaggcaaa tcaatttttt gattataaat tcactcatcc tactgacaat atcatgctgg
     7621 atgaatcgca aagcttgtat tcgactttga acacgatgga agaaaagcta aagatgcaaa
     7681 taactactgc caaattaatt aacgctgttg atgcagacga agtaatggcc atggtcttga
     7741 cgactcatat cttacctgac attatgggaa atcttagagc cttttcgtca caatcattta
     7801 ggtgtaccaa atgtggacaa aaatacagaa ggatgccatt agttggtaag tgcttggaat
     7861 gtcatcatga attattacaa actgtaacac gaggttctgt agagaaatat gtacaaactg
     7921 cactaaatat ttgctcagag tttaaaataa acgaatatct aactagcaga atagacacac
     7981 tgcaagcgga attgaacttg ttatttaaag aggaagtaaa agatcaacac acaattattg
     8041 atttcattta attgcgaaat aggtgacagt tggttgaaat ttctcgttaa ttagtaatta
     8101 cataaaaatt ataattttga cataaaaatt gacagaattt gaatattttt ctatttacaa
     8161 acatgtacta gaataataat cagaaatcat acaattagaa tataaaagac ttgattgata
     8221 attggaaaac atgctcttaa tagctggtga aagcactcat tgaggcagaa aacacctcat
     8281 attgcaatct ttgatacctt taagacaaag aaaaacaagt ttactggtga ggctaaaaga
     8341 caaaggggca ttattacaca tctggcgctg gaaaaaaatc cagaactaaa aactagaacg
     8401 gccattgcac atgcgattgc aaagagcaat ggtattcttt ggcagaatat ctattctgga
     8461 attttcaagg atcttgatga agttttgata ccctcaggtg tggttaggga agcaggccgt
     8521 ctgccactta ggcgtggacc aaaggcatta cagttagagg gagttccctt ctatgaatta
     8581 acagaaacgg gaattttagt tgcatcatct attgaagaac tgggaaatat tagaatgaca
     8641 atacttgaat cttacttcaa taatatgaat agtaatattt ctggtaatga cgtcatgaaa
     8701 aaaagtattt tactcttatt aaaaacaata ccttcatttg taataaaaat tattagtgca
     8761 tatatttatt cttacactac cggtgaaatt gataccataa cacccattac aatcgagaga
     8821 tttcgttccg tcttaaaaga acagatttca atagaaaagg agtttatcga atcttatgat
     8881 gttctttctc aaacccaaaa actactctta aaagattttt tcaagatatt aacctagttt
     8941 catttgaatt atgttttgca taaccaaatt acataaatca ttatgattct ttttatgatg
     9001 ttactgttca aacaaacgct tataatttac cggagtactt aattaggtat tatttatggc
     9061 cgacatgaag attgtatttc ttggaacatc cgcagcaatt ccaactgaaa aaaggtgctt
     9121 gtcatctata gcggttaaaa gaggagggga attgttggtg tttgatgcag gcgaaggaat
     9181 gcaaaggaac ttcctgcaag caaaattagg aataaataag aaaatgaaaa ttttcataac
     9241 tcatttgcat attgaccatt gtttaggatt aatgggattt ttccagacca tgtctctttt
     9301 agggcgcaca aaaaaaattg atatttacgg cgaatcgaga ttgagagaat ttatccacga
     9361 gaattttcgt attatcaaca ttgaattggc ctatgaaata gttattcacg taattgataa
     9421 ggaaggtgta atcgcatcgg aagatgatta tcagataacc tgttgcagag ctacccactc
     9481 aataccggca ttttcctttt gcattaacga acatccaaga ccaggcgtat ttagtgttga
     9541 gaaagcctcg aaactttcca ttcctaaagg ggatttgtac cgaaggctac agcatggtga
     9601 agacgtattt gttgatggaa aattaataaa atcaaatcaa atcgttggac caaaaagaaa
     9661 aggccgcaaa ataggtatat ctggggatac tagaccttct actgaactga aggatttttt
     9721 tgattcatgt gatatcctaa ttttcgaatc tacttacaat catgattatc aaaacaaagc
     9781 aatagagaca tttcattcaa cttcaactga agctgctcta cttgccaagg aatcaaattg
     9841 tagcaagcta attcttaccc atttcagttc aaggtatgat gatctaaata ttctcttgga
     9901 agaagcaaga accattcaca gcaatgtaga cttggctgaa gatatgaaaa cattttacat
     9961 tccatatact gaataacttg ttcatgaagt caatttaaca cttttaaata gttgatcaaa
    10021 aaatattttc atattcttac attgcaaaaa aataacactg taattatttc agataaccga
    10081 aattcatctc ttgcaaaaaa tatttcatta gatctaaatg ttccatatat gaatgccgat
    10141 ttacgtgtat ttgcagacgg agagagtaaa ataagacttg ataatgtagc taaaaagaat
    10201 tgcatcatca ttcattccac atatcctcct actgatcagc atcttatgca acttttcatg
    10261 attatctata aatgcaaaca agacggcgcc agtgatattt gtgtggtcaa tccgtatttg
    10321 gcatatgcaa gacaagacaa ggtatttgtt aatggagaga tagtaaccat taatctaata
    10381 ggacgaattt tggcgtcatt aggaacaaca aagttagtaa ctattgacat gcatagccct
    10441 ggatcattga attattcttt tgagatagtg gatctaagtg ctattccttc tttagctagt
    10501 tatgttaaaa aaaatattac attgaacaag cccatagtca tatcccctga tgagggaggg
    10561 atacaaagag caaagaaatt tgcaggagtt atcggtatag acatgttatc attaattaaa
    10621 acacgagata ggtttaccgg cgacgtatcg atatcgctta gtgatcaaca accattggaa
    10681 aatagagatg ctcttattgt agatgatatg ataagtactg gtaatagtat cgttaaagca
    10741 actgaaattc tgaaaaaaaa taatattggt aatgtatatg tcttctgtac ccatgcactc
    10801 ctacttgatg atgccaaaga aaaattactc aaggctggga taaaggagat aatatccaca
    10861 aattcagttc ccaataaatt tgctaaagtt gatttaagta gcgttatatc taactatttc
    10921 tcagatcatt aattctttgt tttgtcaaaa tttctcatta cactttaata ataattgtta
    10981 cctgattatt aacggttcta tctaattcat ctgttactgc ttttaagaca tgcgcagtgg
    11041 atgacaagct agaaaaatcc aaaattcttt ttccatcaac gatatgtatt tgtggtgcga
    11101 gatcatcttt tgacaaacca ccttcattaa ccaatgactc gattttttct ttcatttctt
    11161 gaggactgcc gctgtagata tcggcatttt caattgatac tctaacatgt ccgaatttat
    11221 ctaataccaa aacaggttgc tttcttgatt tcaaaaacaa tttcttttta tgtatttcgc
    11281 atgcaaaaat gtaataatcc ttcatattga atattctatg cacaccttca ttgataccaa
    11341 agagctcgca cgccaatact tccgcttcct catcaccaat ttcttttgca tcattggcac
    11401 tcacatctaa cttcatatta ccattaacag taacacgtaa aagagacttc tcacttatat
    11461 attcagattg agtggaaatc gattcaggaa gagcgccctt cgaaatagca attttttcaa
    11521 cttcctgaat aaaaagggat atgtcatcag gggtgggatt atctattatc ttttcccttt
    11581 cttctcgaat tgatgcagta caaacaccaa tagaagatat gacttctgaa ttgtcagcta
    11641 ttttaaactg acattgcaat ttatgtgcaa caagtggaac aaggacagat gcaccgccgc
    11701 cgccgcctat taatacaaat ttatcatctt ttaatttgta ttctctgatt aaagttctaa
    11761 tagctggaag tatctttttg actgaaatat ctagaatttt atttgccact tcttccatgt
    11821 tcatacccaa tctctgtccc aggattgaca acgctagttg tgcagattct ttattccctt
    11881 ttgcatagtc attatcaggg attattccca aagcattcgc agcacaagtt gtggttattg
    11941 caaacctctt accagcacca gcttcaattc caatataatc aatcgggtct ccttctctgg
    12001 gcatgaatgt tactatttgt ccgccttcta aatcttgagg ttcggcaaaa catgaatact
    12061 tcaaacccga aatatgcgca gacctaggcc ctacgtcggt tatttttttc cctgaccatc
    12121 tcacaagaga accaccagct atcccgacca ctctgacatc taatgatttt atacatgttg
    12181 ggtgatccat tatggtaacg tatttaactt caggttttcc attttttatg acacaaatat
    12241 ttgttgatgt gcctccaact tcaatgaaaa ttccatttag tatttttaga tgtaataggg
    12301 cccctgcgac acttgcggca ggtcctgata aaactgtcaa aattggtttc gttttaaaag
    12361 tattcatatc ggtcacacca ccatctccct tcattattgt aagtggagca gatatttctt
    12421 gttgacggac agctttttcg acatattttg cagtaccaat ggcctttagt aatatactag
    12481 catttattgc tgcagttaga gtccttattt caagaccata tattccagtt aattcatgac
    12541 ctgcagttgc tggtagatct gatttttgca tgacatacag ttcattacta ggatcatcaa
    12601 caccatatgc ttcactaaca ataagtaccg tcgccccctc atccttcaat tcttttatta
    12661 cctgtgaaat ctctttctca tctaagaatt ttgatgtatc caaaaatcta taacaagtgt
    12721 tcaaatattt gttgggcccc agcttaacgt tacccaagtt tgttcttttc ataatatcat
    12781 ttttttccaa acttactccc ataccaataa ttcctacctt tgtcgtgtcg ccttctaaca
    12841 atgcattaac agcctgcgtt gtactgtgag atattagttc tatatttgat tcattgatgc
    12901 cttccttgcg tataagcttg attagtgatt ctacgatacc ggttgataca ccctcttgtg
    12961 agaaatgaga agttggaacc gtaacctttc cgattatcct accagtgttc atatctattg
    13021 ctactgattt ggtaaacgta cccccaacat caacaccaat tcttactctg ctcattatga
    13081 aaaccggatg atattttttc tcatcatcat ttattattta aatcatgtta gattgtggaa
    13141 ttaagaggaa aagctctcgt attggcaatc actaactgtt gtttgatgta gctaatatga
    13201 tattaggctc aaaatgtctt gctggtgcat caatgtaggc atccaatcaa tattctccat
    13261 tcttcttttt gaatcatcat ttaacgcctc aattagacgt ttgataatct gtttgctaga
    13321 tgtttttgtc gtatcaaatt caataatttt ttgctttcca aattttttta tgctgtcata
    13381 taacgttata ccgagaacct cacttgttat attctgcctt gttttcaata tcgtatattt
    13441 tctttcttta aatgtctgta aaagatactg aggcgaacgt cgtaagacca cgactagatc
    13501 agcctgatcg gacatcagca agtatggagc aaggtgtcct gaaattatca catcatcata
    13561 ttgtttaatt tcctttctca gtaataatga tgcttttttt gtatgcacgt cataggcatc
    13621 tagagtctta tccggaaaaa ctagcttctt ttctattacg aattcattta gattgattaa
    13681 tttaaatcct aacctttttg acaacaaact gctaatagta cgttttccca ctcccggatt
    13741 gcctgtaaca acgattcttg acaactttaa taattacagt aactctaatt tattctgtcg
    13801 tttctaattt aacattaatt actatcaaag gcagaaaaat gaaagactta aaacccgtct
    13861 gtttaaacaa gtctttatta catgaaaata actattttag gttccggcaa agaagtcgga
    13921 cgttcaggaa ttctggtaac atcaaataat actaatatac tgttagacta tggtgtgctg
    13981 ttaaagagag aaccgtcttt tccgattcac gtgagaccaa aagatatcag tacagtcgtt
    14041 cttacacacg ctcatttaga tcattcagga tatattccgt cgctattttt atccaactct
    14101 aatatctcag tcttgggaac aaacccaaca ttcgaacttt ctgaattact tattgaagat
    14161 atgatcaaaa tatctggatt ttatttgccc tttgaatatg cagatttgaa taatatgatg
    14221 agtcatgcaa gaactttaca gtataaggaa aaaaatttgc ttaataacat ggaaattacc
    14281 ttacacgaaa ctggccacat cctcgggggc tcctcaataa tggtagaaag tgaaggaaag
    14341 cgtatttttt acacgggtga tattaataag agaggttcaa aactactgag acctgcagat
    14401 ttagatttac ccgaagttga tatcttaatt attgaaagta cctattctca aacagaacag
    14461 gccccaagag aagaatcaga aaaaagtcta ttgcaatttg cttatgatgt ggttgaaaga
    14521 ggaggaacac tattcatacc ggccttttca gtagaaagag cacaagagat agcatgtgtg
    14581 ttgaaggtta acggtttcaa acataaaata tccatggacg ggatggcatt aaaagctaat
    14641 gaaataatgc taagaaaccc gtcatttcta agagatcctg aaggatttaa gaaaatatta
    14701 tcggaaattg aatgggtcaa aggatggaat agaagaaaac atttgataaa agaaccagga
    14761 ataataatct ctccggcagg aatgcttgta ggtggaacag ctttgttcta tttacaggaa
    14821 atagcaaaaa atcccaacaa tggtattgca ttagtatcgt atcagggtaa aggtactcca
    14881 ggtagactac tccttgaaaa aggacttgtg tcatataatg gaaaaacaaa gaaaagtctc
    14941 gcagaagtaa aacattatga attttccgga cacagtagta gaacagaact atttgaaata
    15001 gttagcaaaa tcaaaggcaa tccaagagtt cttactgttc atggtgatga tatgtcatgt
    15061 acaacgtttg cttctgaaat caaggaaaaa tatggttttg atgcaatagc tccagataat
    15121 ggccagattg tggaagtaaa ttaagaaaat gagctagaat ctcaatcaga atcaatttag
    15181 cataagtgat tgcctggaaa ctat
//
LOCUS       DASPFX010000140         2368 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1514450, whole genome shotgun sequence.
ACCESSION   DASPFX010000140 DASPFX010000000
VERSION     DASPFX010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1514450"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /locus_tag="VD694_03100"
     CDS             <1..573
                     /locus_tag="VD694_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 1,5-bisphosphate isomerase"
                     /protein_id="HXW11723.1"
                     /translation="VTVRYPANKIWDELGVPYRKISDSLFATWGPHACSKLIASACDS
                     GVRFLQLTKFDDLVLKNNKVSGVVINWMPVSALPRNITCVDPVALESKIVIDASGHDS
                     VAIKRMMDRGYVKWKGMEPMSVTGEDAVVEYTGEVYPGLIAAGMSATETHGLPRMGPT
                     FGSMLLSGRKAGQVAISKLKKIPNPDIKIK"
     gene            600..1367
                     /locus_tag="VD694_03105"
     CDS             600..1367
                     /locus_tag="VD694_03105"
                     /inference="COORDINATES: protein motif:HMM:NF042804.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6775 family putative metallopeptidase"
                     /protein_id="HXW11724.1"
                     /translation="MNLSYVHLYSSLTTLFLLKEVSANLRGFLPFIDLDVRPLTFDLN
                     KNLLDDNRKDSSINQVSLNNSADGFNRSLVESQHSSNHSGPKITIIDGFYMQRIYSRI
                     IDENESRLSHIHLVFEDNLVCTYDENDKRYHARPIICGSPSIISIPSIIEGPAKPKGY
                     YFKHMLKDLLSTSSKEIEKEFAGAFISYDDPRLMQVATGYAIQAIFFFLTNGNPFCSQ
                     YPCRLFNSHWQEELIYTQVINPVLCKEHLRLIAQDDN"
     gene            1496..>2368
                     /gene="trxB"
                     /locus_tag="VD694_03110"
     CDS             1496..>2368
                     /gene="trxB"
                     /locus_tag="VD694_03110"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HXW11725.1"
                     /translation="MSKNANQDSHDSQEAKNLYDVIIIGSGPAGYTAGVYTSRAKLKA
                     LIISGSLPGGQLMTTSEVENYPGFPNGIFGPELMMNMRQQAERFGTTIIDDEVLKVDF
                     KKYPFLISTHSESYEGKAVLLCTGASPRKLGIAGEQEFGGRGVSYCATCDGPFFKGEE
                     IAVIGGGDTAIEEATFLTKFGKAVKIIHRREFLRASKILQEKAFENSKIQFIWNNVVT
                     KISGNKKIESIDIKDITTGKSQNLAVGGLFVAIGHEPNTLIFKDQLELDERGYVVLKE
                     NTRTSVEGVFAAGDV"
BASE COUNT          795 a          392 c          485 g          696 t
ORIGIN      
        1 gtaactgtta gatatccagc aaataagatt tgggatgagc ttggagtacc ttatagaaag
       61 atttcagatt cattatttgc cacttgggga cctcacgctt gctcaaagct aattgcatca
      121 gcgtgtgatt caggagttag attcctccag ctgactaaat ttgatgatct agttctgaaa
      181 aataacaagg taagtggagt tgtcataaac tggatgcctg tatctgcatt accaagaaac
      241 ataacgtgtg tggatcctgt cgctcttgaa tcaaaaatag taatagatgc atctggtcat
      301 gactctgtag ctataaaaag aatgatggat agaggatatg ttaaatggaa agggatggaa
      361 ccaatgtccg taaccggaga agatgccgta gtggaatata caggcgaggt ttatccggga
      421 ttgattgcag ctggaatgtc agcaacagag acacatggat taccaagaat gggtcccacc
      481 tttggatcaa tgcttttgtc gggtaggaaa gcaggccaag ttgctatcag taaattgaag
      541 aaaattccaa acccagacat aaaaatcaag taagtatcga ggtcgactat gatatacata
      601 tgaatttatc atatgtacat ctatactctt ccttgacaac tttatttctt ttgaaagaag
      661 tttctgctaa tttacgtgga tttttgccat tcattgatct ggatgtaaga cctctaactt
      721 ttgatttgaa caagaatttg cttgatgata atcgcaaaga cagttcgatc aatcaagtat
      781 cacttaataa tagtgcggat ggattcaata gaagtcttgt ggaatcacaa cattcatcaa
      841 atcatagtgg tccaaaaata acgattattg acggctttta catgcagaga atttactcca
      901 ggattataga cgagaatgaa tcacgattaa gccatattca tcttgtattt gaagataatt
      961 tagtatgtac ttatgacgaa aatgacaaga gatatcatgc tagaccaata atttgcggct
     1021 ctccaagcat catatcaatt ccaagtatca tcgaaggtcc tgctaaaccc aaaggatatt
     1081 atttcaaaca tatgttgaaa gacttgctct ctactagtag taaagaaata gaaaaggaat
     1141 ttgctggtgc ttttattagc tatgatgatc ctcgactgat gcaagtggcc acaggttacg
     1201 ctattcaagc aatatttttt tttctcacca atggtaaccc gttctgttca cagtatccct
     1261 gcagactatt caactcccac tggcaagaag aattaatcta cactcaggta ataaacccag
     1321 tattatgtaa agaacatcta cgattgatag cccaagatga taattagttg aagagtaata
     1381 tcagatattc tcatcacgtt atcacttaat ccttttcgaa cttgattcaa taaaatgctc
     1441 cctttatttc cgaacaaatt attaatggtt aaatcttcca tccacttaat cacatatgtc
     1501 aaaaaatgca aatcaagatt ctcacgactc acaagaagca aagaatcttt atgatgtcat
     1561 aatcattgga tctggaccag caggttatac cgcaggtgtt tatacctcac gtgcaaagct
     1621 aaaagctcta ataatttctg gttcactccc aggtggtcag cttatgacta ctagtgaagt
     1681 cgaaaattat ccaggttttc ctaatggaat atttggacct gaactcatga tgaatatgcg
     1741 acaacaagct gaacgatttg gcaccacaat aattgatgat gaagtgttaa aggtcgattt
     1801 caaaaagtat ccatttttga tatcgacgca ttctgaaagt tacgaaggca aagcagtatt
     1861 actttgtact ggcgcatcgc cgagaaaatt gggtatcgct ggagaacaag aatttggtgg
     1921 aagaggagtt tcatattgtg ctacttgtga tggaccattt ttcaaaggag aagagatagc
     1981 agtaataggt ggaggtgata ctgcaattga agaggcaact ttccttacta agtttggtaa
     2041 agcagttaag ataattcata gaagagagtt tctgcgcgcc agcaaaatat tacaggaaaa
     2101 ggcgtttgaa aactcaaaga ttcaattcat atggaataat gtagtgacaa agataagtgg
     2161 gaataagaag atagaaagca tagatataaa ggatattaca actggtaaga gtcaaaattt
     2221 ggctgtaggt gggctatttg tagctatagg gcatgagcca aatactttga ttttcaaaga
     2281 tcagttagaa ttggatgaaa gaggttatgt tgttctcaaa gagaatacaa gaactagtgt
     2341 tgagggagtt tttgcagccg gagatgtt
//
LOCUS       DASPFX010000141         3304 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_190609, whole genome shotgun sequence.
ACCESSION   DASPFX010000141 DASPFX010000000
VERSION     DASPFX010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190609"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VD694_03115"
     CDS             <1..383
                     /locus_tag="VD694_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11726.1"
                     /translation="LEVVAIRFTSINEFSAIMDTINPTVEMLQDIQKDLSKAVPSATG
                     VLTEIHTLTDDVLTNSNVNIEADKIGSVVDKDALDILNDVQNSLEDEAKEKLPEVPES
                     VISKRPTINLKDDILNSGQVLLES"
     gene            463..2514
                     /gene="nrdD"
                     /locus_tag="VD694_03120"
     CDS             463..2514
                     /gene="nrdD"
                     /locus_tag="VD694_03120"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: protein motif:HMM:NF024984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HXW11727.1"
                     /translation="MRFSYLPPSESKRGVIESTSKRVRMIFSVMASPNRIDILRILNN
                     KGPLTYSELKSLAGFKSKKESGKFAYHLRKLLKQSLVGLNKSERRYTITNLGKLVLNL
                     ARQIEEKSIVESGKMYVRTSHQTIEEFNSHKIIQSLVREANLSLEQATKITEEVENKI
                     YKLSTSYLTSRLLRDCVNNILLEHGLEDQMNKLIRVGIPIFDLSKTLHNSNNSMRNGI
                     NDLIIGISKNVLSDYFVNSFQKDILDMHYNGEIHLDTLEHWGIGPDTVFFDIEQVNNN
                     LDLKGHFLFLPRISGQSKLNLVLPIIISLLQREVSKEIVIESIDRILRDHQMDKIPDY
                     LSLSLISSSISMQYGNPPFVTLVISGKESDNLLIQMLKGYILYVEQVALPNFGLFINH
                     AKSLSTDVLSLIAKIVKLGGKIVLSQESILSSRGIRKLNDTSLLPNIVLNSLTINLPR
                     LAYQSNKDETYFRTKLALLMKPSISTLLLKKEMLSENIRHGILPTLSNVFSFPEVGST
                     TTLVNVAGLNESIYDILGYSREDGFDTVKKVIKTANDVLLGFSQPNTEKFGVSMINDG
                     SSSRFVVLDSDKFGKLTHDFQSYSQGVVITRGMLENENSISENLIQLDRLVSGGLYIR
                     LDVTGASEQELIDTLNIAIPAIPYFDIFEKQFICSTCGKRNIKSSICLSCGSSNMSEI
                     N"
     gene            2627..3154
                     /locus_tag="VD694_03125"
     CDS             2627..3154
                     /locus_tag="VD694_03125"
                     /inference="COORDINATES: protein motif:HMM:NF024997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HXW11728.1"
                     /translation="MITRNRTPSRYVYYGLHLYFSGLSLRKASERLSQLYKRNHVSIW
                     NWIQKYHVRRISSKRKRISEFIIDETLLKVGSEFIWLWVAIEPQNRQILVAVTVTRER
                     NMLIAERFISSIVRIHGKHPVSTDGGTWYPQACRFLNLDHHIHSPLEKSLIERTMHSI
                     SRIEPNVLMTTFLAG"
BASE COUNT         1152 a          520 c          583 g         1049 t
ORIGIN      
        1 ctctggaagt agttgcaatt cgttttacta gtattaatga attttctgca ataatggata
       61 ctattaatcc aaccgttgaa atgctgcaag atatacagaa agatctctcg aaggctgttc
      121 cctccgcaac tggtgttcta actgaaattc atactttaac tgatgacgtg ttgacaaatt
      181 ctaacgtaaa tatcgaagct gataaaatag gttcagtcgt agacaaagat gccctagata
      241 tactaaatga tgttcaaaat agcttggaag atgaagccaa agagaaatta cctgaggttc
      301 cggaatctgt gatttctaaa agacctacta ttaatttaaa ggatgacata ctaaacagtg
      361 gacaggtttt actagagagt tagttttatt ctactaaaaa ctattcactt atttatttat
      421 gatagtttta tttatatact aaaaaccaga ctgcttttgt agttgaggtt ttcatatctg
      481 cccccctccg aatctaaacg tggagtcata gaatctacat ccaagagagt tagaatgatt
      541 ttttcagtta tggccagtcc caacagaata gatattctac gaatacttaa taataaaggg
      601 cctctgacat attctgagct aaaatcatta gcaggattta agtcaaagaa ggaatcagga
      661 aagtttgctt atcacttgcg aaaattatta aaacaatctc tagtgggttt gaataagtcc
      721 gaaaggcggt atactattac aaacctggga aaattggtat taaatttagc taggcaaatc
      781 gaagaaaaat ctatcgttga gagtggaaag atgtatgtaa gaaccagcca tcaaacaatc
      841 gaagaattca attcccataa gataatacaa agcttagtta gagaagcaaa tttgtcatta
      901 gaacaagcta caaaaattac tgaagaagta gaaaataaga tttataaact ttcaacctct
      961 tatttaacct ctcgcttatt aagagattgt gttaataaca ttttgttaga acatggcctt
     1021 gaagatcaga tgaataaatt gattcgggtg ggaatcccca tattcgacct atctaagaca
     1081 cttcacaata gcaataactc catgagaaat gggataaacg atctgatcat cggaatatca
     1141 aaaaatgtcc tttctgatta ttttgtaaat agttttcaaa aagatatatt ggatatgcat
     1201 tataatggtg aaattcatct tgataccttg gagcattggg gaattggacc tgatactgtt
     1261 ttctttgata ttgaacaagt aaataataat ctcgatctta aaggtcattt tctatttttg
     1321 ccacggatat cgggccaaag taaactcaat ttggttttac ctattataat atcattactt
     1381 caaagagaag tatccaagga aatagtaata gaaagcattg acagaattct tcgcgaccat
     1441 caaatggata aaatacctga ttatctctcg ttatcgctaa tatcatcttc aatttctatg
     1501 caatatggga accctccttt tgttacgctt gttatatcag gaaaagaaag tgataacctg
     1561 ttaattcaaa tgttaaaagg atatattcta tatgttgaac aagtggcgtt acccaatttt
     1621 ggcttattca ttaaccatgc aaaatcttta tctaccgatg tcttgtcact aattgcaaaa
     1681 atagttaaac ttgggggtaa aatcgtctta tcacaggaat caattcttag cagtagggga
     1741 attcgcaagt taaacgatac ttcattgcta ccaaatatag tactgaattc tctaactata
     1801 aatttaccac gattggctta tcagtcaaat aaagacgaaa cctattttag aaccaaatta
     1861 gcattgctaa tgaaaccatc aataagtaca ttactattga aaaaagaaat gttgtcagaa
     1921 aatattcgtc atggtatact acctacatta tccaatgttt ttagctttcc ggaagtaggt
     1981 tctactacta cacttgttaa tgtagcagga ttaaacgaat ccatctacga cattttagga
     2041 tattccagag aagatgggtt tgatacagtt aaaaaagtga taaagactgc taatgatgta
     2101 ttgcttggct ttagtcaacc caatacagaa aaatttgggg tttctatgat caatgatggt
     2161 agttcgtcaa gatttgtagt tctagattcg gacaaatttg gtaaactgac tcatgatttt
     2221 caatcatatt cgcaaggagt agtgattacg agaggaatgc tagaaaacga aaattcgatt
     2281 tctgaaaatc tgatacaatt agatagactt gtgtcaggag gcttgtatat tagactcgac
     2341 gtgactggtg cttctgagca ggaactgatt gataccttaa atatagctat tcctgcaatc
     2401 ccttattttg atatttttga aaaacaattt atatgctcaa catgtggaaa aaggaatatc
     2461 aaatccagta tttgtttgtc ctgtggatct agtaatatga gtgagattaa ttaattttgg
     2521 aataaagtga tagtaggtaa attatccgat tttaactatt ttgcgcatat tacggctctg
     2581 ttcatttagc gtcaagtcta tagcttgaag atgccctatc tctttcatga ttacaagaaa
     2641 cagaacacct tcaaggtatg tgtattatgg gttgcatttg tacttttcag gtctatcctt
     2701 aagaaaagcc tcagaaagac tatcccagtt atataaaaga aatcatgttt ccatctggaa
     2761 ttggattcaa aagtatcatg ttagaagaat ttcatccaaa agaaaaagaa tttcagaatt
     2821 tattattgat gagaccttat tgaaggttgg gtcagaattt atatggcttt gggtagccat
     2881 agagcctcaa aataggcaaa ttctcgtcgc agtaactgta actagggaga gaaacatgct
     2941 tatagcagag aggttcatat caagtatagt caggattcat gggaaacatc cagtatccac
     3001 tgatggaggt acatggtatc ctcaagcttg tagattctta aatcttgatc atcacattca
     3061 ttcccctttg gagaaaagtc tgatagaacg aacaatgcac agtatatcaa ggatagaacc
     3121 gaatgttttg atgactactt tccttgcagg ttaaagaact gcaaactaaa acatgtgaga
     3181 aattggctaa atctatttgt aaaattccac aataagaagt tagaaaacat taagtgaaca
     3241 gagccctttg atcttaatta agatttaaat atatttatat tcatataatc ctatgtctgc
     3301 aaac
//
LOCUS       DASPFX010000142         3030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1865513, whole genome shotgun sequence.
ACCESSION   DASPFX010000142 DASPFX010000000
VERSION     DASPFX010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1865513"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..729)
                     /locus_tag="VD694_03130"
     CDS             complement(91..729)
                     /locus_tag="VD694_03130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HXW11729.1"
                     /translation="MYVKVLQETSGRYAPSRVLSFDIAHVFKAFQLIKNNGHISRDLL
                     CQELNLGEGSIKTLIKHLKMQDLIETSRIGTKMSVKGNRIFSYILSSIPRECVLPKCS
                     VALGRYNYAVLLKQLSFAVKSGIEQRDVAIKMGALGATTLFYMNEKFVIPGTRYDALR
                     REPQIRQLLVHKLRPELRDVVIIGSDDTDQRIAELAAKNAALLTVMNHEKHL"
     gene            879..1202
                     /locus_tag="VD694_03135"
     CDS             879..1202
                     /locus_tag="VD694_03135"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HXW11730.1"
                     /translation="MEKKEDNFVGLDKVIADLDNTDNYFLDVFSNKGVDLGILRLRKG
                     ETDTQLPHTVNEVYFIVEGSGFIEMEGKLKPVKKADFIFVSANIRHRFIVDVEDLVVI
                     YFFPS"
     gene            1386..1604
                     /locus_tag="VD694_03140"
     CDS             1386..1604
                     /locus_tag="VD694_03140"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HXW11731.1"
                     /translation="MSNVNMLLVKESSGLPKIAIGVLLAILLLGMFIVGYDQGQLFSL
                     AEGQKAFDDMWMHEFYHDLRHAAGFPCH"
     gene            1639..2376
                     /locus_tag="VD694_03145"
     CDS             1639..2376
                     /locus_tag="VD694_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HXW11732.1"
                     /translation="MKTLAFILITLISGAIAGTILGLINQLLVEPYIDQAIKIEVQNT
                     VASGEPVDLDELVQYRLWQKGGEIIAGTILGTSISALFGIVYVYSRDSLPGSSNKKKG
                     LILAGIMFLVIFLIPALKYPANPPAVGDPETIEYRESLYISMLVISGFSALGVAILYR
                     SLGQSRKDSRKIIVPAIYAVIIALAFAVLPNNPDEVAISADLLINFRIVTTITMGIFW
                     GALGILLGSFWDVVKPHETRPPKLRTV"
     gene            complement(2439..2561)
                     /locus_tag="VD694_03150"
     CDS             complement(2439..2561)
                     /locus_tag="VD694_03150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11733.1"
                     /translation="MNKNDEEGNIEDEIMSLLLSISISIGIEEITAATRLSVYP"
     gene            2829..>3030
                     /locus_tag="VD694_03155"
     CDS             2829..>3030
                     /locus_tag="VD694_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11734.1"
                     /translation="MFDNKKYLVTDDIYDTENTYSFVSNEIGKFDCDFAFLVRRFAAN
                     DDDDVGCGGKIYVGEILNHGKWI"
BASE COUNT          952 a          489 c          600 g          989 t
ORIGIN      
        1 aaaaaaacat aaatcctata gtctaaccca atcaataata tctactgtat atgaaagcat
       61 cgggtgcctt gatataataa taataaaagc ttaaagatgt ttttcatgat tcataactgt
      121 caatagcgcc gcattctttg ctgcaagttc ggcaattctc tggtcagtat catcacttcc
      181 aattattaca acatccctaa gctccggtct taacttgtga actaatagtt gtctaatttg
      241 aggttctctc cttagtgcat catacctagt tcctggtata acgaattttt cattcatata
      301 gaataatgtc gtagcgccta aagctcccat ttttattgca acatctcttt gttcgattcc
      361 agactttaca gcaaagctca gttgtttcag taggactgcg tagttatatc tacctaaagc
      421 aacagaacat ttaggaagaa cacattctct tggaatagat gataaaatgt atgaaaaaat
      481 tctattgcct ttaactgaca tctttgttcc aattctgcta gtctctatta ggtcttgcat
      541 tttcaaatgc tttattaatg tctttatcga tccttcgcca agattgagtt cttggcatag
      601 taaatctcta ctaatatggc cattgttctt gatgagttga aaggctttga atacatgtgc
      661 aatatcaaag gaaagaactc tgctgggagc atatctgcct gaggtttctt ggagaacctt
      721 tacgtacata tgcatctctt gtatgtgatg tgttatgaat aagtactaat atgaatttat
      781 tgtgtgtgcc gtaactaaat aatgcaatgg cgtttcaaat gaggtattca aatatagaat
      841 tatattcgag ggtgataaca aaatgcttaa tagaatcatt ggaaaaaaaa gaagataatt
      901 ttgtcgggct cgacaaagta attgcagact tggataatac tgataattat ttcttggacg
      961 tttttagcaa caaaggcgtt gatttgggaa ttctaagact tagaaaagga gagacggata
     1021 cccaacttcc acatacagtg aatgaggtct attttatagt tgaaggaagt ggatttatag
     1081 aaatggaagg taagctaaaa cctgttaaaa aggcagattt tatctttgtt tctgcaaata
     1141 tacgacacag atttattgtc gacgttgagg atttagtagt aatctatttt tttccatcgt
     1201 aggtctataa attggctcag atttaaaaat tgaagtgact gtttatgata gattgatcat
     1261 aggatagttt atccaatgaa agtacttatt cgtccacatt gtatgagttg tgtatgataa
     1321 agaaacgtgt tggatgaact ggccaagagt ttatatacta gataactgtc tagtatctaa
     1381 attaaatgtc caacgttaac atgctattag tgaaggaatc ttctggtcta ccaaaaattg
     1441 caataggcgt actattggct atactattgc ttggcatgtt tattgtagga tatgatcaag
     1501 gccagttatt tagtctagca gaaggacaaa aggcatttga tgatatgtgg atgcatgaat
     1561 tttatcatga cttgagacat gcagcaggct ttccttgtca ttaatttgcc tctgagttta
     1621 caccaaaaat gatgggaaat gaaaaccctt gcttttattc taataacgct tatttctggg
     1681 gccattgcgg gaacaatact tggtttaatc aatcagctat tagtcgaacc atatattgat
     1741 caggccatca agattgaagt acagaatacc gtggcatctg gtgagcctgt agaccttgat
     1801 gagcttgtac aatatcgctt atggcagaaa ggtggagaga ttattgcagg aacaattttg
     1861 ggtacctcga tatctgcatt atttggaata gtctatgtct actctaggga ttcccttcca
     1921 ggatccagca acaagaagaa aggactaatc ctcgctggaa ttatgttttt agtaatattc
     1981 ttaattcctg cgttgaaata ccccgcaaat cctccagctg tcggagatcc ggagactatc
     2041 gaatacagag agagtttgta tatcagcatg ttagttattt ctgggtttag cgctttgggt
     2101 gttgcgatac tttatagaag cttgggtcaa agccgcaaag attcgagaaa gatcattgtg
     2161 cccgcaatct atgctgtgat tattgctttg gcttttgcag tattgcctaa taacccagat
     2221 gaggttgcaa tatcagccga tttgctcata aatttcagaa ttgtcactac tataacaatg
     2281 ggaatttttt ggggggcatt aggcattctg ttaggttcat tctgggatgt agtcaaacct
     2341 catgaaacta ggccacccaa gctccgcaca gtgtaatgaa tgggatctaa aaaatctatt
     2401 cttagatcaa tgtgtgcaag ttctaaactc aagttcgctt acggatatac ggatagcctg
     2461 gttgctgcag ttatctcttc tattcctatt gatattgata ttgataatag tagtgacatt
     2521 atctcatctt caatattacc ttcttcatcg tttttattca tattgaaggt taagacgtaa
     2581 ctggagtcca gatcagagga agtgaatgaa tatagccaaa agagtactat ggttggacac
     2641 aaatagaatt actggtaaaa atagtcgcaa ataaaatact aagttcaaat aagaaatacg
     2701 gtactattct gggaattaca aatgggggaa tcattccagc cagattaatt gcatgcgaat
     2761 ttgaaattaa tcatatttta ttcatacctg tacgaaataa aaagctacac aaagaagaga
     2821 tacctccatt gttcgataac aaaaagtatc ttgtaactga tgatatttat gatacagaaa
     2881 atacgtactc ttttgtttct aacgaaatag gaaaatttga ttgtgatttt gcatttctcg
     2941 tgagaagatt cgcagctaat gatgatgatg acgttggttg tggcggaaag atatacgtcg
     3001 gagagatatt gaaccatggg aagtggattg
//
LOCUS       DASPFX010000143         3731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1158307, whole genome shotgun sequence.
ACCESSION   DASPFX010000143 DASPFX010000000
VERSION     DASPFX010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3731
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1158307"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /locus_tag="VD694_03160"
     CDS             <1..570
                     /locus_tag="VD694_03160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11735.1"
                     /translation="EECRNERFRKEQNSYINQAGEIIDISFSLKDKKEGIDKMIGGSE
                     EKEEIELKIRREHTVYDKSFPYGHINKSNRSLYFAAAAFTALAGSLHLILVQYFIGFD
                     SNTSTFFIITGLAQIFWVLPIIRRWGRLWYIVGIAGSIALIFFWNITNAPLPVKGVAA
                     PYDDISIIIETLQVVFIAAMMSIVIRERQ"
     gene            complement(697..1302)
                     /locus_tag="VD694_03165"
     CDS             complement(697..1302)
                     /locus_tag="VD694_03165"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HXW11736.1"
                     /translation="MESKIRLEHVVSFSDAIFAFSITFMAVTIQIPNLPENLTQAQVI
                     QNLIGKLGPRFAIYVISFFVIAAYWISYHQIFNHIAGSHVVIVWLNLLFLFFITIIPF
                     AVDLQIDYGLYQVIFILYALVLTSAGASLTLIWLHAMKGRLLNKTMNQTDIQSILLES
                     IVLPSVFVISIFVSIVDLEIAYYFWMVIIPAKVVLRWKYPH"
     gene            1500..2777
                     /locus_tag="VD694_03170"
     CDS             1500..2777
                     /locus_tag="VD694_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HXW11737.1"
                     /translation="MDNDSHNPNLISRFKIAKQAQVLKQRIHKDSEKYDEQFRIGIEI
                     EICLLDSEAKAVNAQPLIEELKGKEYQVDNEYGSCQFEFRTPPTNMENILELNILFEQ
                     FIDHIDKVVQNVYKNRDVYPVFLGANPSPQILREELITDKPRYKKLAEWQSKIPDVEI
                     DGQKIRALQIATAIQGFHLHLQGQNPAHTALMFNHILNIIPSAILLGANSKLFAGKVF
                     SFHEPRIYLYDQSEQQNSGFPSISKYLDGVEDYIDYMTSRKSVIAKDYFGLEKERHDD
                     ARIRLNTEFYRIETRVMSVQPTPKSLFALTEFFIGYLYRAISEERQLRPLAVLREERM
                     AVIRSGYDAMSHFNIMDTIRSQLDFAKKGLSDLGLKEEFLNILEKRLEKKNSPGNYVA
                     KLWHEKFNGSVEKTVFEIISHMWERTKVNQPIM"
     gene            complement(2934..3689)
                     /locus_tag="VD694_03175"
     CDS             complement(2934..3689)
                     /locus_tag="VD694_03175"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HXW11738.1"
                     /translation="MITMIMTPAFLPAAIFVGLISISINYSVLHTTTDTPKTLNDKDE
                     TNSNMNVQQNMEMSTKNERSVVSVNDGNSNFTSIFNGKTLDGWKMAGDGKFVIVESDA
                     SLQSEGGMGLLWYSEKIYKNFILQLEWKVSNENDNSGVFVRFPDPDGNPNNPVREGYE
                     IQIDDRADNPIHQTGAIYNFAAPNKLVSKPPNQWNTMEIQVVNQSYTVLINGEEVTEF
                     KGSKMSKGYIGLQTHDDKSKVSFRNIMIKEIKP"
BASE COUNT         1279 a          626 c          673 g         1153 t
ORIGIN      
        1 gaggagtgtc gaaacgaacg attccgcaaa gaacaaaact cgtatatcaa tcaggccggc
       61 gagataatag acatttcatt ttcattaaag gataagaaag aagggattga taagatgata
      121 ggaggctcag aggaaaaaga ggaaattgaa ttaaaaataa gaagagaaca tacagtatat
      181 gataaaagtt ttccatatgg ccatattaat aagtcaaaca gatcccttta ttttgcggcc
      241 gccgccttta ctgctctagc gggtagtttg caccttatac tagtgcaata ttttattggt
      301 tttgattcca acacgtcaac attttttata atcacagggt tagcacaaat attctgggta
      361 ttgcctatca taagaagatg gggaaggctt tggtatatag taggcattgc tggaagtata
      421 gcattaatat ttttttggaa tattacaaat gccccactcc cagtcaaagg agttgcggca
      481 ccttatgatg atatatctat tataattgaa actttgcagg tagtatttat agctgctatg
      541 atgtcaattg ttattcggga aagacaataa tatcagccgc agggatagtt agtgtttggc
      601 tcatattcgc tagctccctc ttattactta ctagtttggg ttgttcgaag taaaatgtga
      661 ggtcagaaac atatcggcta accctaaaat gatagatcag tgtgggtatt tccatcgtaa
      721 gactaccttt gcaggtatta ttaccatcca gaagtaatat gctatttcta gatcaacaat
      781 tgacacaaaa atagagatta caaagacgga aggcaaaaca atagactcta ataagatact
      841 ttggatgtcg gtttgattca tagtcttgtt aagcaatctg cctttcatag catgcaacca
      901 gatcaaagta agtgaagcac cagctgaggt taaaaccaat gcgtataata tgaatataac
      961 ctgatagagg ccataatcaa tctggaggtc aacagcaaaa gggataatgg ttatgaagaa
     1021 taagaataat agattgagcc atactattac cacatgagag cccgctatat ggttgaagat
     1081 ttgatgatat gaaatccagt atgccgctat gacaaagaaa ctgatcacat agattgcaaa
     1141 tcgtggtcct aactttccta tcagattctg gataacctgt gcttgggtaa gattctcagg
     1201 caagttaggt atctggattg tgactgccat aaaagttata gaaaatgcaa aaatggcgtc
     1261 actaaaggag accacatgct ctagtcttat tttggactcc attcaaaaac ctagtgctag
     1321 taatgttatt gatatctata taatatatcg caacaggggg ttccagaagt taaaagacat
     1381 gagcatttat acactaaata atattccata agagctatta cattgaattc aaagatccat
     1441 gatatcacac agacctaacc ttttataatt gatataataa tactaatgct gtctttactt
     1501 tggataatga ttctcacaat cctaatctta tatcacgttt taaaatagcc aaacaagccc
     1561 aagttctaaa gcaaaggatt cataaagatt ctgaaaagta tgatgaacaa tttagaatag
     1621 gaatagaaat cgaaatatgt ttgctagata gtgaggcaaa ggcagttaat gcacagccat
     1681 taatagaaga actaaaagga aaagagtatc aggttgataa cgaatatggt tcctgtcaat
     1741 ttgaattcag aacgccacca acgaatatgg agaatattct tgagctaaac atattatttg
     1801 agcaatttat agatcatatc gataaagtag ttcaaaacgt gtacaagaac cgggatgtat
     1861 accctgtatt cttaggtgct aatccttctc cacagatttt acgagaagaa ttgattacag
     1921 ataaaccgcg atacaaaaaa cttgcggaat ggcaaagtaa aatccctgat gtcgaaattg
     1981 acgggcaaaa gataagagca ttgcaaatag ctacggcaat acaaggtttt catcttcatc
     2041 tacagggcca aaacccagcc catactgcat tgatgtttaa tcatatatta aacataatcc
     2101 catctgcaat attacttgga gctaatagta aactttttgc tggtaaagta ttttcatttc
     2161 atgagccaag gatctatctt tatgaccaat cagaacagca aaattctggt ttcccatcta
     2221 tttcaaaata tttggatgga gtagaagact atatcgacta tatgacctca agaaaatcag
     2281 ttattgcgaa agattacttt ggacttgaaa aggaaagaca cgatgatgca cgtattcgac
     2341 taaatactga gttttatcgt attgagacaa gagtaatgtc tgtacaacca actcctaaat
     2401 cattatttgc attgactgaa tttttcattg gttatttgta tagagccatt agtgaagaaa
     2461 gacaattacg tcctctggca gtactaagag aagaaaggat ggctgtcata agatcaggtt
     2521 atgatgcaat gagtcatttt aatattatgg atactattag aagtcaactc gactttgcaa
     2581 aaaagggtct atctgattta ggtttaaagg aagaatttct aaatatattg gaaaaaagac
     2641 tagaaaaaaa aaatagtcca ggtaattatg ttgccaaatt atggcatgaa aagttcaatg
     2701 gttccgttga aaaaactgtc tttgaaataa tatctcatat gtgggaaaga acaaaagtta
     2761 accaacctat aatgtaatac ttgcaagtag gcactagtgg ttggaggtag aacatagcat
     2821 gcagaagaat aataaactaa agccctctag caaaagattg cttcttttaa ttcttagaca
     2881 gattcttcaa tagacgtaaa cagaattata ttctttacaa tataatttca ttgttatggc
     2941 ttaatttctt taatcataat attcctaaat gacacttttg atttgtcgtc atgtgtctgt
     3001 agacctatgt aaccctttga cattttgcta cctttaaatt ctgttacctc ttctccattt
     3061 atgagcacag tataagactg gtttactact tgtatctcca tcgtattcca ctgatttgga
     3121 ggctttgaaa ccaatttgtt tggagcagca aagttataaa ttgctcccgt ctgatgtata
     3181 gggttatccg ctctatcatc tatctgtatt tcatatcctt ctctcacagg attatttgga
     3241 ttaccatcag gatcaggaaa acgaacaaaa actcctgaat tatcattctc atttgatact
     3301 ttccattcca attggagtat aaaatttttg tatatctttt ctgaatacca taggagtccc
     3361 attcctcctt ctgattgaag agaggcatct gattccacta ttacaaattt cccgtctcct
     3421 gccattttcc aaccatccaa agtcttacca ttaaatattg atgtaaaatt gctgttaccg
     3481 tcattcacac ttacgacgga acgttcattt ttagtagaca tctccatatt ttgctgcaca
     3541 ttcatattac tattagtctc atctttatca tttagggttt tgggagtatc agttgttgta
     3601 tgtagcactg aatagttaat tgatattgag attaaaccca caaaaattgc agcaggcaaa
     3661 aaggctgggg tcattatcat agttatcata gtcagtgata tagtaataat tatctacagc
     3721 atcccaagta g
//
LOCUS       DASPFX010000144         2375 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1869166, whole genome shotgun sequence.
ACCESSION   DASPFX010000144 DASPFX010000000
VERSION     DASPFX010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2375
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1869166"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            244..1212
                     /locus_tag="VD694_03180"
     CDS             244..1212
                     /locus_tag="VD694_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HXW11739.1"
                     /translation="MVDLVYGRGITDLMREFPLYMTFFRSIIDIRLFHKKKALYGSAD
                     IINVCNLHCTHCYWWLNREDENDELSAEQWRSIIKDTFKKQRLFGVTLVGGEPTMRPD
                     VIDVFCQEMPGRVCVVTNGTFPLKRFDDLYFYWVSLDGTEKVHDSIRGQGSYAKTRNT
                     VMEYISGPPRKGKPAWKDIWITMTINSLNYHTVTDLIEEWKDKINKIGFQFHTPFMKN
                     DPLWLPFGETRNEVVDKIIAIRRKYPNYIVNTEKQIALMKGNWGGNGTIPVQCPSWAI
                     LSLDHKGRTKQPCCIGSSDTKGLKPICEQCGLGCYSVLVAQGIKGI"
     gene            complement(1566..1847)
                     /locus_tag="VD694_03185"
     CDS             complement(1566..1847)
                     /locus_tag="VD694_03185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11740.1"
                     /translation="MENTVIKHVKGLSPDATRYQKKMHYKYGGIVKILRYIEYDKKHG
                     VTNDDIIAILEKLRSDSSYEEIRSSEGFLDRLKEIESSVANTPATKILT"
BASE COUNT          744 a          383 c          446 g          802 t
ORIGIN      
        1 aaatcaggtt ctagtttaat gataacagca acgtttagca aatcctgctt gcttaccggt
       61 catcttaata taattcttga ttttctggcg tttactattg tcatagagac aatgagatct
      121 atcttattta ctgaatatca tggagtatgc ctccgttact caaatatgaa tccgtaaatt
      181 acaatcttgt cttgtgatat cgcccgcgct atctttaatt atcattatct ggtaattgta
      241 tgcatggtag accttgttta tggacgcggt ataactgatt tgatgcgtga atttccactt
      301 tatatgacct tttttagaag tattatagat atcaggttat ttcacaagaa aaaggcactg
      361 tacggttctg cggatattat caacgtctgc aaccttcatt gtactcattg ttattggtgg
      421 cttaatcggg aagatgaaaa cgatgagttg agcgctgagc aatggcgatc gattataaag
      481 gatactttta aaaagcagcg tctttttggt gttaccctcg ttggaggtga gccaacaatg
      541 cgtcctgacg taattgacgt attttgtcaa gaaatgccag gcagggtctg tgtagtaact
      601 aacgggactt ttccattaaa aagatttgat gatctttatt tttactgggt atcacttgat
      661 ggcacagaaa aggtccacga tagcataagg ggtcaaggtt cctatgctaa gacacgtaat
      721 actgttatgg aatacatatc tggcccacct cgaaaaggga aacctgcttg gaaagatatt
      781 tggataacta tgacgattaa ctcactgaac tatcatacag tcacagatct aattgaagaa
      841 tggaaggata aaatcaacaa gattggattt caatttcata ccccatttat gaaaaatgat
      901 ccattatggt taccctttgg agaaacaaga aatgaagtag tcgataaaat tattgcaatc
      961 aggagaaaat atccaaacta catagttaac acagaaaaac agattgcttt aatgaaagga
     1021 aattggggcg gcaatggaac cattccagtg caatgtccat cctgggcaat actttccttg
     1081 gaccacaaag ggaggaccaa acaaccatgt tgtattggga gttctgatac aaagggactg
     1141 aaacctatat gtgaacaatg tggactggga tgttactcag tgcttgttgc acagggcatt
     1201 aagggtattt gaagatcatc ctgcatccat ataccatcta atctcttttc gtatgatttg
     1261 atattagtat aggtgtcagc tttttgttga aaaataaatg catcatgttg tgttattagt
     1321 ttaaattggt ttggttttat gaacaattaa cggtcaccat tggttagagt atctagaaga
     1381 attcttcgct ttaatttatc acacgattat aaagatggtc gtgattcaat tgacataaac
     1441 aagtttgtct atggtagaaa aattaaatat agttgcgaaa aatgcaacac atcatttaca
     1501 acatggaaag cattgcatga acacaaagtt gaagatcatt catactaatg caattttatc
     1561 ggctactatg ttagaatttt cgttgcggga gtatttgcga ctgatgattc aatttccttt
     1621 agtctatcca ggaatccttc actactacga atttcttcat aagaagagtc ggaacgaagt
     1681 ttctccaaga ttgcaataat atcatcgtta gttactccgt gctttttgtc gtattcaata
     1741 tatcgcaaaa tctttacaat acctccatat ttgtaatgca tctttttctg gtacctcgtt
     1801 gcgtctggag ataaaccctt gacatgtttg ataaccgtgt tttccatgtg tttaatatgc
     1861 caatctttca tgggaaaatt atttcgagtc aaaagaatca ataatatttg tatgtagggt
     1921 tatataatat attattattt tcttggtcaa aaactcgata aaaatagcta tgatgtgtta
     1981 tgtaataggc cattcgagaa ggctgctatt ggctattttg agtcaaaaca aaacttgatt
     2041 ttctaaattc ttgttttaac ttttttacta atgtagataa cgttaagaat caatcaaaag
     2101 cggcggcgct gcatgttagc aagtaatttc attcatgtcg cagttgtttg taagctttaa
     2161 ttcatatatg attttttcat aatagatgtg gaaaattaat gagttctatt tcaatttcaa
     2221 tcaccaaata ttccatactg ctttgatcat acgtacttta atattcatcg agctacaatt
     2281 attatggagt attggattct aaggggcact tgattgcaac tagatttttt tcttctgaga
     2341 atgcatcaag ctatgataaa attgttaggt taaca
//
LOCUS       DASPFX010000145         3266 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1303087, whole genome shotgun sequence.
ACCESSION   DASPFX010000145 DASPFX010000000
VERSION     DASPFX010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3266
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1303087"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..973
                     /gene="trpA"
                     /locus_tag="VD694_03190"
     CDS             155..973
                     /gene="trpA"
                     /locus_tag="VD694_03190"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HXW11741.1"
                     /translation="MQNNRIEKKFSQLKAKKQKGLICYIMGGYPNPIACEKIISAIVD
                     GGADIIEIGIPFSDPIADGPVIQEASFKALQKGVTPQICLSLIKKTRKRYPELPIVIM
                     TYSNILQKNGFRKFMEMAKDVGTDGFILPDMTIDESKKYLEYSKDLELASIFLVAPNT
                     SNLRIKNTMAVSTGFVYVVSVYGTTGMRNIFNKYSLTAIENIKKLGLKKNISVGFGIS
                     TPQHVKLMSNHGADAVIVGSAIVKLIDGNKKRNMIKLHNDLRNYVRSLKAACTT"
     gene            complement(991..1314)
                     /locus_tag="VD694_03195"
     CDS             complement(991..1314)
                     /locus_tag="VD694_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11742.1"
                     /translation="MTINDFVLSCATDDVPGYFTYEGENMLIVQSKEGAKNNRNDFER
                     IEEFMSALISHESVHVVISKLVDGQISDSLDDIEIVVERYGKKYQVSLNNMFFSTDFS
                     GIITG"
     gene            complement(1338..>3266)
                     /locus_tag="VD694_03200"
     CDS             complement(1338..>3266)
                     /locus_tag="VD694_03200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HXW11743.1"
                     /translation="QEYANSAVETLRGISLVKKEIPGCFTTLGLSNVSFGLPPNARKI
                     INSVFLHHALKAGLDTVIINAKDIIPIGEIKDEQIKLAEDLIFNRHANALSDLIYYFE
                     NKNVTATRNEQKLEEINKDWSFDKRCYYRIVNRIKDGIEAEVVGAIADKLEKKVEETV
                     ENIQKEDLLKKHPQLAHDAAVETLNQVLLPAMKEVGDKFGAGELILPFVLKSAECMKS
                     AVSELEKYLIKKQGVSKGKLVLCTVYGDVHDIGKNLVKTIFTNNGYTVYDLGKQVPVQ
                     QIIDKIKEVQADAVGLSALLVSTSKQMQFFIEKARELDLKIPALCGGAAINSDYINRI
                     AKADEIYKAGVFYCKTAFDGLNVMNKLRSPERDKFVEDWNNKISKFDERKIDGIKTDI
                     DSPVSKTIPVSPPVAPHLDTPIVLKSSEIDLEEVWRYLNKKSLFVLSWGIRGKSASEI
                     GDPESLLLEWKKKVIDEKLFSPTVVYSYFKCSNQGNNLVVESNKQGEVVFEFPRSSKP
                     KHLCITDYFGKQDTVAFQVVSVGQKTVSKIEELNSTNNYTDAYYLHGLAVETAEALAE
                     WVHQRIRKELKIDKNRGLRYSWGYPSCPDTMQHYLVWKLIDPIRTGIGLTSAGQITPE
                     YSTAAIVVHHPDAEYFLL"
BASE COUNT         1031 a          615 c          536 g         1084 t
ORIGIN      
        1 atgtcatgca gtttcatatg ccatgaagct ggcaagaaaa atgaaaaaag atgaaaatat
       61 cattgtcaca ttgtctggta gaggtgataa ggatatcgat caagtcatga agtatagaaa
      121 aaaatacatt agcaggtaat aacagttggc taatttgcaa aacaatagaa ttgagaaaaa
      181 attctcccaa ttaaaggcaa aaaagcaaaa gggtctaata tgctacatta tgggcggtta
      241 tcctaatccg atagcctgtg aaaaaataat ttccgcaatt gttgatggcg gtgctgatat
      301 tattgaaata ggaattcctt tttcagaccc aattgcagac ggaccggtaa ttcaggaagc
      361 ctcatttaag gcattgcaga aaggagtgac cccacagata tgcttgagtc tgataaaaaa
      421 gacaagaaaa aggtatcctg aacttccaat agtaattatg acatattcta atattttaca
      481 aaaaaatgga tttaggaaat ttatggaaat ggcaaaggac gtcggtacag atggctttat
      541 cttgcctgat atgactattg acgaatcaaa gaaatacttg gaatattcaa aggatcttga
      601 actagcatca atatttcttg tcgcaccaaa tacatcaaat ttgagaatca aaaataccat
      661 ggctgtctca actggatttg tctacgtagt ttcagtttat ggtaccactg gtatgaggaa
      721 tatttttaat aaatattctc ttactgctat tgagaacata aaaaaattag ggcttaaaaa
      781 aaatatttct gtaggatttg gaataagtac cccacagcac gtaaagctca tgtcaaatca
      841 tggggctgat gctgtaatag ttggaagcgc cattgtcaag ttgatagatg gtaataaaaa
      901 aaggaacatg attaaattac ataatgattt aaggaattat gttagatcac taaaagctgc
      961 atgcaccact tgatagtaac aagggtacta ttaacctgta ataattccac taaagtctgt
     1021 tgaaaagaac atattgttta gactgacttg gtatttttta ccatatcttt ccacgacaat
     1081 ttcaatgtca tccaaggaat cagaaatctg accatctact aattttgata tcactacatg
     1141 tactgattca tgtgaaatca atgcactcat aaattcttca attctttcaa aatcgtttct
     1201 attatttttt gcaccttctt tggattgaac aataagcata ttttcaccct cataagtaaa
     1261 gtatcctggc acatcgtcgg tagcacatga aaggacaaaa tcatttattg tcatttatct
     1321 ctgcaatctt agcttatcta tagtaaaaaa tattctgcat caggatgatg aaccactatg
     1381 gcagcagtag agtattccgg agttatctga cctgcagatg taagaccaat tccagttctg
     1441 ataggatcaa ttaatttcca taccaaataa tgctgcatgg tatcaggaca actaggatat
     1501 ccccaactat atctcagacc cctattctta tcaattttca attcctttct tattcgttga
     1561 tgaacccatt ctgcaagtgc ttcagcagtt tctactgcca gaccgtgaag atagtacgcg
     1621 tctgtgtaat tattggttga atttagctcc tcaattttcg aaacagtttt ttgacctact
     1681 gagactactt gaaatgctac agtgtcttgt ttaccaaaat agtcagtaat acacaagtgt
     1741 tttggttttg aagatcttgg aaattcaaaa acaacttccc cttgtttatt agattcaaca
     1801 acaaggttgt taccttgatt gctacactta aagtaagaat atacaacagt aggagaaaag
     1861 agcttctcat caattacttt ctttttccat tctaataaca atgattctgg atcacctatc
     1921 tctgacgcag attttcctct tataccccat gagagaacaa aaagagattt cttattcaaa
     1981 tatctccaaa cttcctcaag atcaatttct gaagatttta atactattgg cgtatccaaa
     2041 tgaggtgcaa ctggtggtga cactggtatt gtcttactaa ctggcgaatc tatgtcagtt
     2101 tttataccat ctattttcct ttcatcaaac ttactaattt tgttattcca atcttcaacg
     2161 aacttgtccc tttctggaga tcttaatttg ttcataacat ttaatccatc aaaggccgtt
     2221 ttacagtaaa atactcctgc cttgtatatc tcatcagctt ttgctattct attaatataa
     2281 tcactattaa tggcagcacc tccacagaga gcggggatct tgagatcaag ttccctcgcc
     2341 ttttctataa agaactgcat ttgttttgaa gtagaaacca gtaaagcaga caaacctacc
     2401 gcatcagctt gtacttcttt aattttatct ataatctgtt gaactggaac ttgcttacca
     2461 agatcataaa ccgtatatcc attattagtg aaaattgttt ttacaagatt cttgcctatg
     2521 tcatgaacgt caccataaac agtacataga accagctttc ctttgcttac tccttgcttc
     2581 ttgattagat atttctctag ttctgacacg gcagatttca tgcattctgc tgatttcaat
     2641 acaaatggta gaattaactc tccagcccca aacttgtcgc ccacttcctt cattgctgga
     2701 agtaggactt gattgagtgt ttcaactgct gcatcatgtg ccaattgtgg atgcttcttt
     2761 agcaagtctt ctttttgaat attttcgaca gtttcttcta cttttttttc cagtttgtcg
     2821 gcaattgctc caactacctc tgcttcaatt ccatctttta tgcgatttac tatacgatag
     2881 taacaacgct tatcaaaact ccaatcctta tttatttctt ctagtttttg ttcattccta
     2941 gtcgcagtaa cattcttatt ttcaaaataa tagattaggt cagaaagagc attggcatgc
     3001 ctattaaata tgagatcttc ggcaagcttg atttgttcgt cttttatctc acctatcggg
     3061 ataatgtctt ttgcgttaat tatcacggta tcaagtccgg cttttagagc atgatgcaag
     3121 aataccgaat tgattatttt tctcgcgttg ggaggaagtc caaagctaac gttgcttagg
     3181 ccaagagtag taaaacaacc tggaatttct ttttttacca aagaaattcc cctaagagtc
     3241 tcaactgcag agtttgcata ttcctg
//
LOCUS       DASPFX010000146         3602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_901250, whole genome shotgun sequence.
ACCESSION   DASPFX010000146 DASPFX010000000
VERSION     DASPFX010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_901250"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VD694_03205"
     CDS             complement(<1..276)
                     /locus_tag="VD694_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11744.1"
                     /translation="MVISMKEVCKCVGVSGKVSIVKDFYGYSSVPTSFTDTNTGFIIP
                     GVLSLLEQSRLIKNDLYITLHLRINGPGAFATNPSIDQQINAMRQLYA"
     gene            complement(302..1456)
                     /locus_tag="VD694_03210"
     CDS             complement(302..1456)
                     /locus_tag="VD694_03210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11745.1"
                     /translation="MVEKLSIDKNGTELASLEPNLEDHGDPVGGSLICRNLKGKLAIS
                     LTGGNNFAKDSGGGEITVCNGFGNSRVLILHGDLSENMDGGIIILQSSTNPNSIVMNG
                     SESTISIKKGANDSILMKGSNAALYIGNTNNEGDVFVRNDKGNEVIHMNGGDANVYIG
                     NTDNEGDIILRDQNGKDSIHLEGGSGIDNEGGMIFIKDAGERQVLEFNSKNAALYIGN
                     TDNEGDIFLRNNEGNNTIHLDGGSGDIILENADCAEEFDIYRSSEIEPGTVMIISNDG
                     KLEVSSKSYDRRVAGVISGGGNLKPGIVLDKKKSKSSRAPLAMLGKVYCKVDADQSPI
                     KIGDMLTTSKTPGHAMKAVNRSQAFGAVVGKALMSLSTGKGIIPILIALQ"
     gene            2167..2970
                     /locus_tag="VD694_03215"
     CDS             2167..2970
                     /locus_tag="VD694_03215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11746.1"
                     /translation="MKALEWPKIVEQLAEYPDAAAPGWSNELNGVTNDGKNWYITQKD
                     RIWKFPLSFDLNMDIDTDEAHPGVLNNTIPSFYNYTVGTGYYFYDHLGDLDYYQGRLY
                     VALEGHAYDHESFLELPAPSPKIAIYDANSLAFISAADVLGYKTDIVSSCAWCAINPL
                     NGLLFTSDSTPNNNTLRVYMHYLSPDGKLILNFAGYFPLVGPALEQVCGGVFSKNGHL
                     YLVTSRAFFTAPIYDPNTDTWIPRPIEKDGIFGFDMISGRQSSPHSSPL"
     gene            2933..3145
                     /locus_tag="VD694_03220"
     CDS             2933..3145
                     /locus_tag="VD694_03220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11747.1"
                     /translation="MDDKVLHTVVPYDPSYLEKEELEGITIWDADVNGTAPFIEGQIH
                     LIMLDNDVSPDDIYFKHFRVTEKDKI"
     gene            complement(3264..3437)
                     /locus_tag="VD694_03225"
     CDS             complement(3264..3437)
                     /locus_tag="VD694_03225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11748.1"
                     /translation="MLSLEQKSEDYDPMIVFTYALKAQESRRQYPRRLKPFLDFLKLD
                     GSLNDKAKLQTLK"
     gene            complement(3487..3589)
                     /locus_tag="VD694_03230"
     tRNA            complement(join(3487..3546,3575..3589))
                     /locus_tag="VD694_03230"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3524..3526),aa:Arg,seq:cct)
BASE COUNT         1097 a          694 c          637 g         1174 t
ORIGIN      
        1 tgcatataat tgtctcattg cattaatctg ctggtctatt gatggatttg tggcaaatgc
       61 cccgggacca ttgattctta aatgtaaggt aatgtacaag tcatttttta taagtcttga
      121 ttgttccaac aatgaaagaa ctccgggtat aataaaaccg gtgttagtgt ctgtaaatga
      181 ggtgggaaca ctagaatacc catagaaatc ctttacaatg gaaactttac cggatacgcc
      241 tacacattta caaacctctt tcattgatat aaccatgata tttcataccg ttcaaattgt
      301 atcattgtag agcgatgagg ataggaatga ttcctttccc agtactcaat gacatcaacg
      361 cttttccaac aacggcacca aaagcttgag atctgttgac ggctttcata gcatgtccag
      421 gggtcttaga agttgttagc atgtctccta tttttatcgg agattgatcg gcatcaactt
      481 tgcagtatac cttgcctagc atggctaaag gtgcccttga actctttgat tttttcttat
      541 ctaatacaat tcctggtttc aaatttcccc cgccggatat gacgcctgca actcttctat
      601 cgtatgactt tgaagaaact tctagtttgc catcgttgct aataatcatg acagtaccgg
      661 gctcaatttc tgaggatctg tagatatcga attcttctgc acaatcagca ttttctaaaa
      721 ttatatctcc actgccccca tctagatgta tggtgttgtt cccttcatta tttctaagaa
      781 atatatctcc ttcgttgtca gtgttaccaa tatacaaagc tgcattttta ctattaaatt
      841 ctaatacttg tctttctcca gcatctttga taaaaatcat accaccctca ttatctattc
      901 cgctccctcc ttccaaatgt attgaatcct ttccattttg atctctaaga attatatctc
      961 cctcgttgtc agtgttacca atatacacat tagcatcacc accattcata tgaataactt
     1021 cgttaccttt atcatttctg acaaacacgt caccttcatt attggtgtta ccaatataca
     1081 atgctgcgtt agaccctttc attagtatag aatcatttgc tcctttcttt atgctgatag
     1141 tactttcaga accattcata actatagaat tgggatttgt tgagctttgg agtataataa
     1201 tgccaccatc catattttca gataagtcac catgcaagat tagtactcga gaatttccaa
     1261 aaccattaca aactgttatt tcaccacctc cagagtcctt cgcgaaattg ttaccaccag
     1321 ttagagatat cgctagtttg cccttcaagt tcctacatat tagacttcca ccaactggat
     1381 ctccatgatc ttccaagttt ggttctagag atgcaagttc agttccattc ttatcgattg
     1441 ataatttttc aaccatacaa atagttggta ttaattttta taagaattac ttatcaagtg
     1501 aatagttatc aactaataag tgttcatcac tgaaattaag atttcattag gcccatgttg
     1561 agtgaaagca ccacactctg attggaatat actatcgcta gtaatatagc gcaaataatt
     1621 gccagattga tccttctctc acctatacat tagaatttcg agattgaatc catggtcaag
     1681 gcggaaggga tagattatac tggaatgcaa gaagtatcgt tcgaagaaat tatagggtaa
     1741 ataaacaatt tgagtactgc tttgaagaca atccctgaag aagtaacaac aactatcaca
     1801 gttgaaaacg aaaacttaaa ctaatagtac ggttgattag atttagtgat cacatgatta
     1861 ataagaagca ggaaatatct ggaggatacg cttacgacat ctagtttcgt agactatttc
     1921 aggaaatcta ctgatatttc aaatgttgaa ccaatcatag aaaagatgtt ttgtccaatt
     1981 aaatgcagga tggacttagt cgtaatcctt tttaaattat gataaaagat gatcagttta
     2041 aaaaaccaca tcaaggacac attaggaatt atcgatctca gcgaagggat catgaattcg
     2101 ctgttgaatg aattttataa aaaacgacct aaaaaattcc cttataaaag gagtattcga
     2161 tctatcatga aagcacttga atggccaaaa atcgttgaac agttggctga gtatcctgac
     2221 gcagctgctc ctggctggag taacgaactt aacggggtga ccaatgatgg aaagaattgg
     2281 tatattacac agaaagatcg aatctggaag tttcctttgt cgtttgacct taatatggat
     2341 attgatacag atgaagcaca tccaggagtc ctcaataaca caattccatc attttacaac
     2401 tatacagttg gaaccggata ttatttttat gaccatttgg gtgatttgga ttattatcaa
     2461 gggcgtttgt atgtcgcgtt agaaggccat gcctatgacc atgaatcgtt tctggaacta
     2521 cctgccccat cacccaagat agcaatatac gatgcaaata gtcttgcctt tatttctgct
     2581 gctgatgttt tggggtacaa aactgatata gtttcaagtt gcgcgtggtg tgcaataaat
     2641 ccattaaatg gtcttttgtt cacttctgat tcaacaccga ataataatac cctccgagtt
     2701 tacatgcatt acctttctcc cgatggtaaa ttgatcttaa actttgctgg atattttcca
     2761 ttagttggtc ccgcgttaga acaagtctgc ggtggagttt tttctaagaa tggacatctt
     2821 tatcttgtta catccagggc tttttttact gctcctattt atgatcccaa tactgatact
     2881 tggattccta ggccaattga aaaagatggt atttttggat tcgacatgat aagtggacga
     2941 caaagttctc cacacagtag tcccttatga tccttcctac cttgaaaaag aagagttaga
     3001 gggcataaca atatgggatg ctgatgttaa tggtactgcg cctttcattg aaggtcaaat
     3061 tcatctgata atgctggata atgatgtgag tcctgacgat atttatttta agcattttcg
     3121 tgttacagaa aaggacaaaa tttgaggtgt cgttaatggt taaacattta acaaaaatga
     3181 aaataggccc ggaattgtca aattctgtgt tctaactgtc attccactaa gaataggaaa
     3241 aagaaactaa agaagagaat ggcttattta agtgtctgga gttttgcctt gtcatttagt
     3301 gaaccatcca atttcaaaaa atccaaaaat ggttttaacc ttcttggata ctgccggcgt
     3361 gattcttgtg cttttaatgc atatgtgaaa acaatcattg gatcataatc ttcgcttttt
     3421 tgttctaacg ataacaattt tacttctata ataaaaatgg gcctaaataa agggacaaga
     3481 ttaactcggg cccggaggga tttgaaccct cgacctgacg cttagggggc gtccgcgcta
     3541 tccattttgc gctcatctca aaatttgaaa tgacctgcgc tacgagccct tgaaatttga
     3601 at
//
LOCUS       DASPFX010000147         2610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1010859, whole genome shotgun sequence.
ACCESSION   DASPFX010000147 DASPFX010000000
VERSION     DASPFX010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2610
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1010859"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VD694_03235"
     CDS             <1..222
                     /locus_tag="VD694_03235"
                     /inference="COORDINATES: protein motif:HMM:NF014084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HXW11749.1"
                     /translation="RTYGWVKCYPVIINGNEKIRSDLLILERTHHDNNMLEIIAPVNI
                     KKVLNLKNGDNVKVTLKTSDNKAESNIIN"
     gene            complement(205..903)
                     /locus_tag="VD694_03240"
     CDS             complement(205..903)
                     /locus_tag="VD694_03240"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HXW11750.1"
                     /translation="MFKEQPVLRIELNRHYYFNKVKFMIEPSDKAILTAIYVSTLEPE
                     ISPLEFLKNRTTLSEDVFNLKIKDMIKNGFVEKSDPLRLTFIGRGLLKVVLIGGVFDI
                     VHPGHIHTLKDAKGQGDVLVVVVARSSTALKINKQRKIYHDEKLRKELVSSIRYVDYA
                     IIGREGTLYDTVEYVKPDIIALGYDQIHTEKEIAVNCAKRGIDTRIIRLNTPIPGSKS
                     TQIKEELGHSIYDI"
     gene            1088..2059
                     /gene="pdxS"
                     /locus_tag="VD694_03245"
     CDS             1088..2059
                     /gene="pdxS"
                     /locus_tag="VD694_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HXW11751.1"
                     /translation="MTISQVGEYPLSKGTKISTVDGKQTTSGTALIKRGFAHMEKHGV
                     IMDVTNVEQAQIAEDAGAVAVMVLDKLPFDVRNAGGVARTASVKVIQAVIDSVSIPIM
                     AKCRIGHSSEASILEEIGVDMIDESEVLSPADEVRHIWKWNYTTPFVNGAKNLGEALR
                     RVEEGAAMIRTKGEPGTGDVSHAVTHIRLVNNEIKKLKGIYDNNDDQELIKISREIQS
                     SLEIVKETGRLGRLPVVNFAAGGISTPADAALLMNLGCDGIFVGSGIFKAEDPLERAK
                     AVVIATTYYDDPKTVLEAQKMIDEKKSMLGLDTKNLDLRMQERGPTI"
     gene            2056..>2610
                     /gene="pdxT"
                     /locus_tag="VD694_03250"
     CDS             2056..>2610
                     /gene="pdxT"
                     /locus_tag="VD694_03250"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR03800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HXW11752.1"
                     /translation="MNDELLIGVLALQGDVEENIKATTDALAEMNQKGKVISVRYPEE
                     IMKIDGLIIPGGESTVMGLLIAIKNGLLDSINKVLQKGLPVMGTCAGMIVLAKNSYDR
                     VVGNKKQLLLGALDIDIERNSFGRQYDSFESNLEISGIGNDFRGIFIRAPSVISAGPQ
                     VQILGKFDGKIVAVRQENIIGTSFH"
BASE COUNT          845 a          429 c          551 g          785 t
ORIGIN      
        1 cgaacatacg gatgggtcaa gtgttatcct gttattataa atgggaacga aaagattcgt
       61 tcagatctac taattctaga aagaacacat catgacaata acatgttaga aattattgcc
      121 cctgttaata tcaaaaaagt actgaatttg aagaatggag ataatgttaa ggtaaccttg
      181 aagacatcag ataataaggc cgaatcaaat atcataaatt gaatgaccta gttcttcttt
      241 gatctgtgta ctcttagaac caggtattgg tgtattcaaa cgtattattc ttgtatctat
      301 ccctcttttt gcgcagttta ctgctatttc cttttctgta tgaatttgat cataccccaa
      361 agcgatgatg tcaggcttca catactctac ggtatcgtat aacgtaccct cccttccaat
      421 tattgcataa tcaacatatc tgattgaaga aactagttct ttcctaagtt tttcatcgtg
      481 atagattttt ctctgtttgt ttatcttaag tgctgtggag ctccttgcta caactacaac
      541 taggacgtct ccctggcctt tggcgtcctt taatgtatga atatggcctg gatgaacaat
      601 atcaaaaacc cctcctatca atacaacttt tagtaaccct cttcctatga aagttaatct
      661 tagtggatcc gatttttcca caaagccatt ttttatcata tccttgattt ttaaattaaa
      721 gacatcctca gataaggtag ttcgattctt tagaaactct aggggtgaaa tttctggctc
      781 aagtgtagaa acatagatgg ctgtcagaat agctttatct gaaggttcta tcatgaattt
      841 gaccttatta aagtaataat gtctatttag ttctattctc aaaacaggtt gttctttaaa
      901 caagaaactt ctagcctaat aacctgtcat cttattttgg cttttgaatt atattttatc
      961 acatactact agggtcatga atatgtctac atatgtatgt cttgaatcaa ggtctaaaat
     1021 ttggttagaa tccgctatca tttagcaaga ctaatatcta aataatgtaa actaagaaaa
     1081 atagtagatg acaatatcgc aagtaggtga atatcctttg tcaaaaggca ctaaaatttc
     1141 aaccgttgac ggcaagcaaa caacaagtgg aactgccttg ataaagcgcg gatttgctca
     1201 tatggaaaaa catggtgtaa taatggacgt aacgaatgtt gaacaagctc aaatagctga
     1261 ggatgcggga gcagttgcgg taatggtttt ggataaactc ccttttgatg tgcgaaacgc
     1321 cggaggagta gcaagaactg ctagtgtcaa agtaattcaa gcggtgatag attcagtgag
     1381 cattccgatt atggccaagt gcaggatcgg tcattcatct gaagccagta tacttgagga
     1441 gataggagta gacatgattg atgagagcga agttcttagc cccgctgatg aagttaggca
     1501 tatttggaag tggaattata cgaccccatt tgtgaacggt gcgaagaatt tgggagaggc
     1561 tttgcgaaga gtagaagaag gtgctgcaat gataagaaca aaaggagagc caggtacagg
     1621 cgatgtttca catgcagtaa ctcacatacg tctggttaat aatgagatca agaaattgaa
     1681 gggaatttat gataataatg atgaccagga actaatcaag atttcgagag aaatacaatc
     1741 ctctcttgaa atagttaagg aaactggcag gcttgggaga cttcctgtcg taaattttgc
     1801 tgccggagga atatctacac ccgcagatgc ggctttacta atgaatctgg gttgtgatgg
     1861 aatatttgtg ggatcgggga tattcaaagc agaagatcct cttgaaaggg ccaaagccgt
     1921 tgttatcgcg actacctatt atgatgatcc aaagactgtt cttgaagcac aaaaaatgat
     1981 tgatgagaaa aaatcaatgc ttggcctaga tacaaagaat ttagatttaa ggatgcaaga
     2041 aagaggacct acaatatgaa tgatgagtta ctaattggag tattggctct tcaaggtgat
     2101 gttgaagaaa atatcaaagc aacaactgat gctttggcag aaatgaacca gaaaggaaaa
     2161 gtaatctctg ttcgttaccc tgaagaaatt atgaaaattg atggattgat tattcccggc
     2221 ggtgaaagca ctgtgatggg tttacttatt gcaataaaga atggattgtt agattcgata
     2281 aacaaagttc tacaaaaagg attaccagtt atgggaacat gcgcaggaat gattgttctg
     2341 gccaaaaact cttatgatag agtcgtcggc aacaagaaac aattgttgtt gggcgcactg
     2401 gatattgata ttgagcgcaa ttcttttgga agacagtatg attcatttga gtcaaattta
     2461 gaaatatctg gaattgggaa cgattttaga ggaatcttta ttcgcgcacc ctctgtgatt
     2521 tcagcaggac cacaggttca aatcttgggc aaatttgatg gaaaaatagt ggctgttcgg
     2581 caggagaaca taattggaac ttcctttcat
//
LOCUS       DASPFX010000148         2241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_154316, whole genome shotgun sequence.
ACCESSION   DASPFX010000148 DASPFX010000000
VERSION     DASPFX010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154316"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VD694_03255"
     CDS             complement(<1..221)
                     /locus_tag="VD694_03255"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HXW11753.1"
                     /translation="MSDTTENVLILQGGGSLGAFGCGVFKALAKNNIKIDIIAGTSIG
                     GLNGSIIAGSKKDYPDKALEQYWLEIAESG"
     gene            complement(262..1671)
                     /locus_tag="VD694_03260"
     CDS             complement(262..1671)
                     /locus_tag="VD694_03260"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HXW11754.1"
                     /translation="MSSNNKIIKTINPSTEEIIQEYEVMTKEQINDKVKKAQNTFQED
                     WKKDANKRTDLLHDFANELRKNKENLAMTATKEMGKAIKESRSEVEKCAWAIEYYADH
                     GQIFSTGEIVNTDARKSIITFQPLGVIGSIMPWNFPYWQGLRFAAPSLMVGNTIILKP
                     ASATMQCGIEIEKTFDKAGLSEGVFQTLVGDSSIAESLIDSNGINAITFTGSVPVGAK
                     VAQRATSKLKKTVLELGGSDPFIVCADADIEKASTGAVKGRFINCGQSCIASKRFIVV
                     KEVSDEFTERFVQKTEQLRVGDPLSEETDVGPLVNAKSLENMEGIVNRTVKSGAELLT
                     GGERINGKGYFFKPAIFKNVSPEMEIAQEEVFGPVAPIIKANDEKQALEIANDSKFGL
                     GASIWTQDLEKAERLSSMVDSGIVTVNNVVVSDPRVPFGGIKNSGFGRELSRYGMLEF
                     VNIKSVRFYDQLVHNHHVE"
     gene            complement(1668..>2241)
                     /locus_tag="VD694_03265"
     CDS             complement(1668..>2241)
                     /locus_tag="VD694_03265"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HXW11755.1"
                     /translation="LTAYGAVKNANLKPYDNVVIVGAGGLGLMSIQLAKAVTGSRIIA
                     MDLDDEKLKAAKENGADSTINSKKEDPVKSVMELTDKMGADAVIDFVNASKTVETDMQ
                     FLRKRAKLVLVGLFGGELKLSLVSMPTRAYRLIGSYTGTLSDMTELISLAKRGVIKPL
                     VSNRFKLSQATEALTMLKEGKIVGRGVINP"
BASE COUNT          566 a          514 c          347 g          814 t
ORIGIN      
        1 ccactctcag ctatttccag ccagtattgc tccaacgcct tatcaggata gtccttctta
       61 ctgcctgcaa tgatagatcc gtttagccca ccaattgatg taccagctat tatgtcaatt
      121 tttatattat tttttgcaag tgccttgaat actccacagc caaaggcacc taacgaaccg
      181 ccaccttgaa gtatcaagac gttttccgtt gtatcagaca taggctaatt tcttacccct
      241 ccatgtcatg cttacttact gtcactctac gtgatgattg tgaactaatt gatcgtagaa
      301 cctgacagat tttatgttaa caaactcaag cattccatat ctagatagtt ctcggccaaa
      361 tccactattc tttataccac caaacggaac acgggggtct gaaactacga cgttatttac
      421 tgtgactatt ccagaatcta ccattgatga cagtctttct gccttttcta aatcctgagt
      481 ccagatgctt gctccaagac caaatttgga gtcattggca atttctaaag cctgcttttc
      541 atcattagct ttgataatag gggccacggg accaaatact tcttcttgtg ctatttccat
      601 ttcaggggac acatttttga aaattgcagg cttgaaaaaa tatcctttac cattaattct
      661 ttctccacct gtaagtagtt cagcccctga tttaacggtc ctgttgacta ttccttccat
      721 attttcaaga cttttggcat taacaagggg gcccacatca gtttcttctg atagtgggtc
      781 tccaactctt agctgttcgg tcttttgaac aaatctttcg gtaaattcat ctgaaacttc
      841 tttgactaca atgaacctct ttgatgctat acagctctgc ccgcaattga taaaacggcc
      901 ctttaccgct ccggttgatg ctttttcaat atcggcatct gcacacacaa taaatggatc
      961 acttcctcca agctctagaa ctgtcttctt tagtttggat gtcgcccttt gggcaacttt
     1021 agctccaaca ggaacgcttc ctgtgaatgt aatggcgtta ataccgtttg aatctatcaa
     1081 tgactcagca atactagaat ctccaacaag tgtttgaaaa acaccttccg ataatccagc
     1141 tttgtcaaag gttttttcaa tttctatacc acattgcatt gtagcactgg ccggttttaa
     1201 tattatggta tttccaacca ttaatgaagg cgctgcaaat ctcagaccct gccagtaagg
     1261 aaaattccaa ggcattatgc tacctattac tcctagtggt tgaaatgtta tgatgctttt
     1321 tctagcatca gtatttacaa tctcaccagt tgaaaatatc tgtccgtggt ctgcataata
     1381 ttctattgcc caggcgcatt tttctacttc tgatcttgat tcttttattg cctttcccat
     1441 ttcttttgtg gctgtcatgg caaggttctc cttgtttttt cttaactcat tagcaaaatc
     1501 atgaagaaga tcggttctct tgtttgcatc ttttttccaa tcttcttgaa atgtattttg
     1561 agctttcttt actttgtcat ttatctgctc tttagtcatt acctcatatt cttggataat
     1621 ctcttctgtt gaaggattta ttgtctttat tattttatta ttactactca aggatttatt
     1681 acacctctac cgacaatttt accttctttt aacattgtta atgcttctgt tgcttgactt
     1741 agtttaaatc gatttgaaac aagtggtttg attactcctc ttttggctaa cgatatcaac
     1801 tctgtcatat cgcttagagt tccagtatat gatcctatca atctgtatgc tcttgttggc
     1861 atactgacta aacttagttt tagctcacct ccaaatagtc ctaccagcac taacttggct
     1921 ctttttctta gaaattgcat atctgtttct acagtctttg aggcattgac aaagtcaatt
     1981 actgcatctg cccccatttt gtcagtcagc tccataactg attttactgg gtcttctttt
     2041 tttgaattta tagtgctatc cgcaccattt tctttagcag cttttaattt ttcatcatct
     2101 aaatccattg cgattattct agagccagtc actgcttttg ctaattgtat agacatcagt
     2161 cccaaccctc ctgcaccaac tataacaaca ttatcatatg gtttaagatt ggcgttcttt
     2221 actgcaccat atgctgttag c
//
LOCUS       DASPFX010000149         2533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1286431, whole genome shotgun sequence.
ACCESSION   DASPFX010000149 DASPFX010000000
VERSION     DASPFX010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1286431"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..359)
                     /locus_tag="VD694_03270"
     CDS             complement(39..359)
                     /locus_tag="VD694_03270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11756.1"
                     /translation="MRQNTRRRNRILTIVMTTFILLSFQYYYFHQSEARSVKSSTSSS
                     VPMQDLCPALGDLRNSIRTSSDESTVLISPASSVGKLVVSLGDATSSLEDVREMVRKI
                     LGPC"
     gene            complement(444..>2533)
                     /locus_tag="VD694_03275"
     CDS             complement(444..>2533)
                     /locus_tag="VD694_03275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HXW11757.1"
                     /translation="IGKYEYKSYNPETHEFEEGYIPFGPIDFWDPATYAPEWVDKGKY
                     WHVLLGLQFPDKELILQVVKDNDLLNTRNQNVATTEKETIGFPWSTDSSIKRVRYRVR
                     IPQWAVMRADYQGTKSNNPEGIVTNREIGKLNRNIVLLVDEIIEREKFRIKYPWMITG
                     LWIYLYKSLPIKIIYNEILEKLPGFHKSIVKEANETLADIREDRLVLAILDVAQNKGI
                     NQDKIQKISTLIRFLDGVYADIGLGEGSTEYHNFHHSLEVSYMALKMLPNAIDSYRFS
                     ADDIEILLVSALLHDYDPLQFTYNGNSSKSENNGYPNQGSTIRPSVGPRVYRTIETIQ
                     RYQIHDAYFKLDQPDLEKVFENFSFKFSKQPGVEPQKTEIEKSDKSSMVEALIWRTDF
                     PYFKQEIAQKKYKELLSAIKEKDHDIGKVNILAEVLWLSDLSVTYMGSDPIRAWNRVT
                     NLYDELFLPKLEAVSRTDSYFSDFADTHLFQELIKMKGFPDVFKSRWNSVYQFFHEGN
                     PSTVLVRTILNARSSFLKLNVFVGYFKGEIIYQLANQIYAEFFIGIGEDQNEISFAKS
                     KIAELEPQNASVFWGNSVKLLPSIPDKTIDNFILNIPSSAGLEILTNKLSFSSIINIM
                     SEKLISAGNLIIFTDIEKGSDLFNSIYDEILSKGFTDCTEVSNYYLSKLDPATLHYPS
                     TPNILSFCNKQIQ"
BASE COUNT          754 a          484 c          423 g          872 t
ORIGIN      
        1 tgtaatagag aattttggct ctcaagctcg aataaattct agcagggacc caatattttc
       61 ctcaccattt cacgaacatc ctcaagactg cttgttgcgt cacccaatga tacaaccaat
      121 ttgccaactg acgatgctgg agaaataagt accgtgcttt catcagaaga agtacggatc
      181 gagtttctta aatctcctaa tgctggacaa agatcctgca ttggtacgct tgacgatgta
      241 ctagacttta ctgatctggc ctcggattgg tgaaaataat agtattgaaa tgataataaa
      301 atgaatgttg tcataacaat agtcaagatt ctatttctcc tgcgtgtatt ttgcctcatt
      361 tctgataatc aaataattgc catatttcag cattcattgt tgtcttcaaa acaaaccaca
      421 acaagttaag aattttaaag aaattattga atctgtttat tacaaaatga caggatattc
      481 ggcgttgaag gataatgcaa agttgctgga tccaactttg acaaatagta atttgaaact
      541 tcagtacagt ccgtgaagcc ctttgaaaga atttcatcat agatggaatt gaataagtca
      601 cttccctttt caatgtctgt gaaaattata aggttgccag cactgatcag cttttcgctc
      661 attatattaa tgattgaaga aaatgataac ttgttagtta gaatttccaa tcctgcagag
      721 ctaggtatat tcagaatgaa attatcaatt gttttatctg gaatgcttgg taggagtttt
      781 acagaatttc cccaaaaaac agatgcattc tggggttcca actctgcaat tttggattta
      841 gcaaatgaga tttcattttg gtcctctcca attccaataa aaaattccgc ataaatctga
      901 tttgccaatt ggtaaattat ttctccttta aaatatccca caaatacatt gagttttaga
      961 aaggaactac gggcatttag tatagttcgt accaaaacag tagatggatt accctcatga
     1021 aaaaactgat aaacagaatt ccatctgctc ttgaatacat ctggaaatcc cttcattttt
     1081 attaattctt gaaaaagatg tgtgtctgca aaatcagaaa aatacgaatc agttctagat
     1141 actgcctcta gtttgggcag gaatagttca tcatacaagt ttgtaaccct attccatgcc
     1201 cttattgggt ctgaacccat ataggtaacg gataaatcag aaagccataa cacttctgca
     1261 aggatattta cctttccgat atcatgatct ttttccttaa ttgcagaaag cagttctttg
     1321 tattttttct gagctatctc ttgtttaaaa taaggaaaat ctgttctcca aatcaatgcc
     1381 tctaccatcg aactcttgtc agatttctca atctctgttt tttgaggctc cactcctggt
     1441 tgtttactaa atttaaatga aaaattctca aagacttttt ccaggtcagg ttggtcaagt
     1501 ttgaaatatg catcatgtat ttggtatctt tggatagttt ctattgtcct gtacactctg
     1561 ggacccacag atggacgaat agtcgatccc tgattagggt aaccgttatt ttctgacttt
     1621 gaactattgc cattatatgt gaattggagt gggtcataat catgcaaaag agccgacaca
     1681 aggagaattt caatatcgtc tgcagagaat ctataactat ctatagcatt tggtaacatc
     1741 ttaagtgcca tgtaggaaac ttcaaggctg tggtgaaaat tatgatactc tgtggatcct
     1801 tcgcccagtc caatatctgc atacacccca tcaagaaatc ttataagggt tgaaattttt
     1861 tgaatcttgt cttggttaat tcctttattt tgtgctacat ccaaaatggc caaaactaat
     1921 ctgtcttctc taatatctgc tagcgtttca tttgcctctt ttactattga tttatggaat
     1981 ccgggaagtt tttctaggat ttcattgtag attatcttga ttggcaaact cttgtaaaga
     2041 tatatccata gtcctgttat catccacgga tactttattc taaatttctc tctctcgatt
     2101 atttcgtcta caagaagtac aatatttctg ttcaattttc caatttcacg atttgtaaca
     2161 attccttcgg ggttgtttga ttttgttccc tgataatcag cacgcattac tgcccattgg
     2221 ggtattctta ccctgtatcg gactctctta attgagctgt ccgttgacca tggaaatcca
     2281 atagtttctt tctccgtagt agcaacattt tggtttctcg tatttagcaa gtcattatct
     2341 ttaacaacct gaagtatcaa ttctttgtcc ggaaattgaa gcccaagtaa tacatgccaa
     2401 tatttgccct tatccaccca ttcgggagca tatgtggctg gatcccaaaa atctattggc
     2461 ccaaacggga tatatccctc ttcaaactca tgcgtttcag gattatatga tttatattca
     2521 tattttccaa ttt
//
LOCUS       DASPFX010000150         3928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_866751, whole genome shotgun sequence.
ACCESSION   DASPFX010000150 DASPFX010000000
VERSION     DASPFX010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_866751"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            395..1996
                     /locus_tag="VD694_03280"
     CDS             395..1996
                     /locus_tag="VD694_03280"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HXW11758.1"
                     /translation="MNRSLLLASSLLASFLLASSIAFVPYFSANNVVHAQETDNQNQG
                     EVKHVTLVASEKQVQVAPDNALHPGGIMYNAMVFNGTIPGPVISIDQGDTLNITLKNE
                     GQTIHSLDFHAGFGPDKALSGSVKPGESKTWSLKGEFPGVFLYHCGADGLNGIWEHIS
                     NGMYGGIVVHPPNEKPAKEFYMVYSELYNTADKGPFVGTNGTAGSFDIGKLLSDNPDL
                     VLTNGMAHKYVPAVGEVNKLELNKDAEIFKVKPGELTRWYIVNAGPNDGVSFHFISSM
                     ITVRDGSNTANNDYGTQVVNDETWWITPASGSVIEATFPDPGLYVGVDHAMKDVVKGG
                     AFAVLAMENSTATDHPEGTCVAHGEVVCPPAEEAEGAATDDNQTANEEDNDNNDGANN
                     ENGNDGNEAQDGESEVTQNATMLNTTGGNMTGNGTMMAGNMTAASGNEIDIAPGSSAP
                     SNAKFYEPPTLTVPAGSTVTWKNSDSTLHTVTSGSAETGVSGTDFDSSYLAAGKTFQH
                     TFSSAGTFDYYCTLHPFMKGQVVVN"
     gene            complement(2153..>3928)
                     /locus_tag="VD694_03285"
     CDS             complement(2153..>3928)
                     /locus_tag="VD694_03285"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HXW11759.1"
                     /translation="SDVVRYIQPYPEDVANLSSEYSLYVLKPWLIPVILGLIGLAIGL
                     VSIKLSTSIGKNGIDEISDEFHNKKNKLSLKNSAIRTFSSFLAIGSGTSGGVEDSLAH
                     TGSTLASIIGRIFKLDQEEIRIAIAAGMGSTIGGILRLPFGGAIFSLELLYRRDFIIK
                     SLYPAFLASITSYIVSGVVLDWPSFLYIPQEFITKTTLQSIAAYGVIAAIIGIAGIGY
                     VKTVQAFQRHFENMKIPLYFKPALGGVIIGIFAIGFPEILGTGYGWLQLAALGNHEVF
                     PLWIMFPVIAMKIFATSVSNASRNTTGLLGPSLVIGGLIGSALITLFHSFGIFLFIDT
                     TSATLISIFAFFTASTRTPISAIVVGVEMVGSYTLLIPTVISVIISNILSGKNNYIYK
                     NYVSNIRTQLLKVKRHDSNLRNYLVRDAMSSDFYNINRSTTITGAVQIMRDLNVKSLV
                     VTNNEDRFEGMVYFEDLSNVSTSQENTTIESIMIYDPPMLRPLDPIMDYFEIVSKTAV
                     SEIPVISSDDSKLVLSILSLRDINKLLNNINDPILPDLQKSNNEFQKDLNINIEALRN
                     LSQDEDLDKSDKDSKIISKLKDYLA"
BASE COUNT         1302 a          732 c          742 g         1152 t
ORIGIN      
        1 aagcttacca agtccatccg accttttgaa taaatctgta actgttggtg ctaatgatcc
       61 actccatata ctcaagatta ggtttgctaa aggagaaata agtaaagaag aatatcaaga
      121 aatgaagtgg ctactgaggg atgaatgatt ttctaatcac tgatttgttc atgtaatcta
      181 cgcaaaagga ttattgcttc gatttgagtt gcaaatattt atagcttgtt atggcgcaat
      241 ttttaaataa ttggcttcct attttgataa gattaaacaa tatgtacatt cttcaaaata
      301 tatgtataat ttcaacaaaa ttctaatcta aattaaaata ttttatcctt atctccagaa
      361 taatatttat agtgggaacc tttacaatcc gctaatgaat cgtagtttac tactcgcaag
      421 ctcactgtta gctagtttct tgcttgcaag cagtattgct tttgttccgt atttttcagc
      481 gaacaatgtg gtacatgcgc aggaaacaga taatcaaaat caaggtgagg tcaaacatgt
      541 aactttagtc gcgtcagaaa aacaagttca agtagctcct gataatgcat tgcatccggg
      601 aggaataatg tacaatgcga tggtattcaa tggtactatt ccaggaccag ttatatcaat
      661 cgatcaaggt gatacactaa acatcacatt aaagaatgaa ggccaaacta tacacagtct
      721 agactttcat gcagggtttg gtccagataa agcattatct ggcagtgtga aaccaggtga
      781 atcaaagaca tggtcactta aaggagaatt cccaggtgta tttctatatc actgtggtgc
      841 tgatggtcta aacggaatat gggaacacat ttctaacgga atgtatggtg gcattgttgt
      901 tcacccacca aacgaaaaac cagccaaaga attctacatg gtatatagcg aactgtacaa
      961 cacagctgac aaaggcccat tcgtaggaac caatggaaca gcaggatcat ttgacattgg
     1021 caaactatta tcagacaatc cagacttggt actgacaaac ggtatggctc acaaatacgt
     1081 accagcagtt ggtgaggtaa acaaactaga acttaacaaa gacgcagaaa tattcaaggt
     1141 aaaaccaggc gaattgactc gttggtatat agttaatgca ggaccaaacg atggtgtttc
     1201 attccacttc attagcagca tgatcaccgt aagagatggt agcaacacag caaacaatga
     1261 ctatggcaca caggtcgtaa atgacgaaac atggtggatt actccagctt ccggttcggt
     1321 aatcgaagca acattcccag atcctggtct ctatgtaggt gttgaccatg caatgaagga
     1381 tgttgtaaaa ggcggtgcat ttgcagtact tgcaatggag aactctacag caactgatca
     1441 tccagaagga acatgtgttg cacatggtga agtagtatgc ccaccagcag aagaagctga
     1501 aggtgctgct actgacgata accaaactgc aaatgaagaa gacaatgaca ataatgacgg
     1561 cgcaaacaat gaaaatggaa atgacggaaa tgaagcacaa gacggtgaaa gcgaagtaac
     1621 ccaaaatgct acaatgctca ataccactgg cggtaacatg actggtaacg gaacaatgat
     1681 ggctggaaac atgactgcag catccggaaa tgaaatagac atcgctccag gatcctctgc
     1741 accaagtaat gccaaattct atgaacctcc aacattgaca gtaccggcag gcagtacagt
     1801 aacttggaaa aattctgatt ctaccctcca taccgtaact tcaggtagtg ctgaaaccgg
     1861 cgtatcaggt acagattttg actctagtta cctagcagca ggaaaaactt ttcaacatac
     1921 gttcagcagt gcaggtacat ttgactacta ttgtactctt catcctttca tgaagggtca
     1981 agtggtagta aactaactac ttttttctct tttttgttat aaaataaaat taaaaaatta
     2041 ttctacatag tatgtacttg agcaatctca ggtatagaag ataaacctac gattgtaaca
     2101 tggattttca aatataaagt tttaagttct atagttcttg cattttgtat tatcaagcaa
     2161 ggtagtcttt taacttgctt atgattttac tgtccttgtc agacttgtcg agatcctcat
     2221 cttgggacaa attgcgaaga gcttcaatat tgatattaag atccttttga aactcattat
     2281 tactcttttg taaatcaggc aaaattgggt cattgatatt gttcaataat ttgtttatat
     2341 ctcgtagtga taatattgaa agaaccaatt tactatcatc agatgatatt acgggaattt
     2401 cagacacggc agttttactt actatttcaa agtaatccat aattgggtcc aaaggacgaa
     2461 gcatcggagg gtcatatatc atgatggatt caatagtcgt gttctcttga ctagtcgaaa
     2521 cgtttgataa atcctcaaaa tagaccatcc cttcaaatct atcttcatta ttagtaacta
     2581 caagtgattt gacatttagg tccctcataa tctgaacagc accagtaata gttgtactac
     2641 gatttatgtt atagaaatct gagctcatcg catctcttac aagatagttt cttaaattcg
     2701 agtcatgtct ttttaccttt aacaattggg ttcttatatt ggaaacataa tttttgtaaa
     2761 tataattatt tttgcctgag agtatgttcg atattattac cgatatgact gtgggaatga
     2821 gcaatgtata gcttccaacc atttcaacgc caactactat agcagaaatg ggagttctgg
     2881 tacttgcagt aaagaatgcg aatattgata tcaatgtagc cgatgttgtg tctatgaata
     2941 ggaaaattcc aaaagaatga aacagtgtaa ttaaagcaga gccgataaga cctcctataa
     3001 ccagtgaagg accaagtaga ccggtagtat tgcgagaggc gttagaaact gatgtagcaa
     3061 aaattttcat agcgattact gggaacataa tccatagggg aaagacttca tgattaccaa
     3121 gtgctgccag ttgtaaccat ccataacctg tacctaatat ttcaggaaaa ccaattgcaa
     3181 atattccaat aataactccg cctagcgcag gcttgaagta gagcggaatt ttcatatttt
     3241 caaaatgtct ctgaaaagcc tgtaccgttt tcacatatcc tattccagct attcctatga
     3301 ttgcagcaat tacgccgtaa gctgctatag attgaagtgt tgtttttgtt atgaactctt
     3361 gtgggatata gaggaaagaa ggccaatcca acacaactcc tgaaacgata taacttgtta
     3421 ttgatgctaa gaacgctgga tacagcgact tgataatgaa atctctacgg taaagtaatt
     3481 ctaaactaaa aattgctcct ccgaaaggta acctcaaaat gcccccaata gttgaaccca
     3541 ttcccgcggc aattgcaatt cgaatttctt cctggtcaag tttgaaaatt ctaccaataa
     3601 ttgatgcaag tgtggaacca gtatgtgcta aggaatcttc aactccacca ctagttccac
     3661 ttcctattgc cagaaaacta gagaatgtcc ttattgccga gttttttaaa cttaatttat
     3721 ttttcttgtt atgaaattca tcactaatct catctatgcc gtttttgcca atcgaggttg
     3781 ataattttat tgagaccaat cctatggcta aaccaattag tcctaaaatc acaggaataa
     3841 gccacggttt taacacatac agggagtatt ctgaagacaa gttggcaaca tcttcaggat
     3901 atggttgaat gtatctcact acatcgct
//
LOCUS       DASPFX010000151         2591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1341206, whole genome shotgun sequence.
ACCESSION   DASPFX010000151 DASPFX010000000
VERSION     DASPFX010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1341206"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2310)
                     /locus_tag="VD694_03290"
     CDS             complement(<1..2310)
                     /locus_tag="VD694_03290"
                     /inference="COORDINATES: protein motif:HMM:NF013256.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004559 - alpha-mannosidase activity
                     [Evidence IEA];
                     GO_process: GO:0006013 - mannose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 38 C-terminal
                     domain-containing protein"
                     /protein_id="HXW11760.1"
                     /translation="MGTGSIESDPRIFLVPHTHYDAIWVFNKEDYYYINIELILKQAL
                     DLIKNAGYKFLIEQTYLLEHIEANYPQLFIEVRKYAKEKKIEVAGGQYLLSDVMLPNG
                     EVLIREILEGKKYVKQKLDQDVIVGWGADEFGFNAQWPQILKGCGYKYFAFRRGVDRP
                     KPSEFLWSGLDGSSILCHWMPLGYRAGLDLTKFGESYHKLKEYAATDLILMPSGSGVT
                     LPQAETAEAVEEWNKKNGSNNTKMIIATASQFFDSLERRALTQKYNFEVRKGEMYSGR
                     LSEVFPDCTSSRMWIKQGTKEFENTLLALERWNAISRLENCIDSSDLLTNYWKKILFI
                     AMHDALPGTGIDEVYDEIKEMFGSMQQGIRKSLIGSLSELSRRIKIEKNNDRPGHFVV
                     VFNSLPWEVKDWTEADLEFDKGIIRGIANLKSIVDDNNDDNNSGRNGKAYGNTFHVNS
                     DDYHNRNSGSKLIDLEIIDSTFYPDNSIKQIKIGFIANIPAFGFRSFEIIPGNDKPAQ
                     LTSSSHETLFKNGEFEIQVNPENATITVAKNGKPFVKNGNELLLEEELGDLYYHRENL
                     GLLKSESGAGVKYGSFKPENFVVTKGKLRSHIVLDSKYYALRWPYRLTSKLKPLLYRH
                     NFLDIQKEIIVYNDLTRIDFVTHIHDRHPHSRIRVKFDISSSISNQNYWSGTQFGAIE
                     RKVDQFYLKEEFAEKKGNTSNDSNYASNNNKAEWSEKPSGIFPSLEWIDYSDKDQKGG
                     VSVLHKGIPSHEMRDNSIYLTLLRSVVVLS"
     gene            complement(2328..>2591)
                     /locus_tag="VD694_03295"
     CDS             complement(2328..>2591)
                     /locus_tag="VD694_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11761.1"
                     /translation="KLFKDKFHNNVTFFGIGDSTNDIPMLNLVDIPILVHRQDSSWVD
                     DGEIKMKNAVDRSRSRISSNKIIKVEGIGPNGWENAIHKIFWS"
BASE COUNT          728 a          547 c          400 g          916 t
ORIGIN      
        1 tgaaagcaca acaacacttc ttaacaaagt cagataaatt gaattgtctc gcatttcgtg
       61 tgatggaatt cctttgtgaa gcacactcac ccctcctttt tgatctttat ctgaatagtc
      121 tatccactcc aatgaaggaa atatgccact gggtttctca ctccactctg ccttgttgtt
      181 attactagcg taattgctat cattggaagt attacccttt ttctcagcaa attcttcctt
      241 aaggtaaaat tgatcgacct tcctctctat tgccccaaat tgtgtaccag accaatagtt
      301 ttggttagat atcgaagagg aaatatcaaa ttttaccctt attcgtgaat gggggtgtct
      361 atcatgtatg tgtgttacaa aatctatacg tgtcaagtca ttataaacga tgatctcctt
      421 ttgaatatca agaaaattgt gcctgtatag caggggcttg agctttgagg tcaatctgta
      481 aggccaacgc aatgcatagt acttgctatc caagacaata tgcgatctca attttccttt
      541 tgttacaaca aagttttctg gcttaaatga gccatatttg actcctgcac cactttctga
      601 tttgagtaat cctagatttt ctctatgata atatagatcg cccaattctt cttccaaaag
      661 aagttcgtta ccatttttga caaagggctt accattttta gctacggtga tggttgcatt
      721 ctctgggtta acttgtattt caaattcacc atttttgaaa agcgtctcat gtgatgagga
      781 tgtcaattgc gcaggtttgt cgtttcctgg gattatctca aatgacctaa atccaaaagc
      841 aggtatgtta gctatgaatc caattttaat ttgttttata ctgttatcag ggtaaaaagt
      901 agaatcaata atttctaaat caattagctt gctaccgcta ttcctattat gatagtcatc
      961 actattaaca tgaaaggtat taccataagc tttaccgttt ctaccactat tgttatcatc
     1021 attattatca tccacaatag actttaagtt ggcaattcct ctaatgattc ctttatcgaa
     1081 ctctagatct gcttcggtcc aatccttaac ttcccaggga agtgagttaa aaacaactac
     1141 aaagtggccc ggccgatcgt tatttttctc tatcttaatt cttcttgaca attcactaag
     1201 agagccaatt agagattttc ttataccctg ttgcatgcta ccaaacattt ctttaatctc
     1261 atcatatact tcatcgattc ctgttcctgg aagggcatca tgcattgcaa taaatagaat
     1321 cttcttccaa tagtttgtga gtaaatcgga agaatcaatg caattttcaa gacgagatat
     1381 tgcattccat ctctcgagtg caagcaaagt attttcaaac tcctttgttc cttgttttat
     1441 ccacattctc gaagaggtac agtctgggaa tacttcagat aatcttccag aatacatttc
     1501 accctttcta acttcaaaat tgtatttttg tgtgagtgct cttctttcca atgaatcaaa
     1561 aaattgagac gctgtggcta taatcatttt tgtattgttg ctaccatttt tcttattcca
     1621 ttcttcgact gcctctgctg tttctgcctg tggaagtgtg actccactgc ctgatggcat
     1681 caatatcaaa tcagttgctg catattcctt taatttatga taggattctc caaatttagt
     1741 caggtccaat cctgctctat aaccaagtgg catccagtga cacaatatag aagaaccgtc
     1801 caaacctgac catagaaatt ctgatggctt tggtctgtca actcctcttc taaatgcgaa
     1861 atatttgtat ccacaaccct tcaatatctg cggccattga gcattaaaac caaattcatc
     1921 tgcaccccag cccacaatta catcctggtc aagcttttgt tttacgtatt ttttaccctc
     1981 caatatttct cttataagaa cttctccatt aggtagcatt acatcagata gaagatattg
     2041 tccgccagcg acttctatct ttttttcctt tgcatacttt ctaacttcta taaacaattg
     2101 tgggtaatta gcttcaatat gctccagtag ataggtctgt tcaattaaga atttgtagcc
     2161 ggcattcttg attaaatcta atgcctgttt taaaattagt tcgatattaa tataatagta
     2221 gtcttctttg ttgaataccc aaattgcatc ataatgcgta tgaggaacca gaaatattct
     2281 ggggtcgctc tcgatggaac ccgtacccat attcatattc tattaattca gctccaaaat
     2341 attttatgta ttgcattctc ccagccatta ggacctatcc cctctacctt tatgatttta
     2401 ttgctactaa ttctactacg acttctatca acagcatttt tcatttttat ttcaccatca
     2461 tctacccagg agctatcttg tcggtgtaca agtatcggga tatccacgag attaagcatc
     2521 ggaatgtcat ttgtgctatc tcctattcca aaaaatgtta cattattatg gaacttgtcc
     2581 ttgaaaagct t
//
LOCUS       DASPFX010000152         2644 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1996160, whole genome shotgun sequence.
ACCESSION   DASPFX010000152 DASPFX010000000
VERSION     DASPFX010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1996160"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VD694_03300"
     CDS             <1..407
                     /locus_tag="VD694_03300"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11762.1"
                     /translation="DIVNLFRDALSRIDELSIFTFTDPLSAFEHIGMNKSKYAVVISD
                     LRMPGINGMDLLYKIKKENPLVRTLLMTAFEVNDKVFDEYVKNKIIDGFLQKPLKLSD
                     LESEVHNQINLYKKSNSNKNDISNEHQPVKDT"
     gene            795..1214
                     /locus_tag="VD694_03305"
     CDS             795..1214
                     /locus_tag="VD694_03305"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HXW11763.1"
                     /translation="MVNFHTSKKINVPASDVWVILSDTDREPEFWHGTKSINNISKSG
                     NSVEREVVIAFKDSVCKETVTIEPMKSVTTDITEGPLKGRKTVVINADGEKACVVDVE
                     WDIRLSGFMGIFSKMVKKHILEGTNDALDRISKIVEK"
     gene            1327..2439
                     /locus_tag="VD694_03310"
     CDS             1327..2439
                     /locus_tag="VD694_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HXW11764.1"
                     /translation="MSHPQAIVLVGVIISILTLGVVTVVGSQKEENSTSNTKQFGGHT
                     PGYGTYETTGSVLDPTSLPTDPKNSVVDPMKFLREFNHGRVSHSANGSTIRDFTIIAS
                     DKSTKEISPGVNYNVWTFNNTVPGPTLRATEGDLIRINFINNGSGFHTMHFHGIHPAE
                     MDGVFEGIAPGGKFTYEFVAEPFGVFPYHCHIQPLEEHISHGLYGALIIDPKKPHTNA
                     DEMVMIMNGYDTDFDTENNFYTVNGIPYYYMHHPIKIEKDKLIRIYLVNMLEFDPLNN
                     FHLHANLFNFYKTGTNLVPDEYTDIVTLNQGERGILEFSYKFPGKYMFHAHKTEFAEK
                     GWMGTFLVTEPENAVNASSLTNITGVITNLTNGGIS"
     gene            2439..>2644
                     /locus_tag="VD694_03315"
     CDS             2439..>2644
                     /locus_tag="VD694_03315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11765.1"
                     /translation="MERERGIIKENISKRKIVFFGMVPFAILGLMIVLILSYPTLFFS
                     NQLKPLPQISIEKIEFEPLKIIATV"
BASE COUNT          940 a          429 c          487 g          788 t
ORIGIN      
        1 tagatattgt caatttgttt cgtgatgcat tgagcaggat agatgagttg tcaatattca
       61 cgtttacaga tccgctatct gcctttgaac atattgggat gaataagagt aaatatgctg
      121 ttgttatctc agacctaaga atgcctggga taaatggcat ggatctactt tacaaaataa
      181 aaaaagaaaa tcccttagta agaacgttac ttatgactgc gtttgaggtg aacgataaag
      241 tatttgatga atatgtaaag aataaaatta tagatggatt tctacaaaaa ccattaaaat
      301 taagtgatct agagtcagaa gtccataatc aaattaatct ttacaagaaa tcaaattcaa
      361 acaaaaatga catttcaaat gaacatcaac ctgttaagga tacttaatat caaaaaaatt
      421 catgctcagc cacttctatt gatgttggat gaaaaatcta ataaatgatc attcttaacc
      481 cctctgaaat cgacggaact tataaataaa gataaataat ccgactgatg aagaacatga
      541 attaattatt gaaactgaaa agaactcaaa agtaggaggt agtgcgcata tcgaagctgg
      601 caagaacact gagtttgaat ttaagggaat aaaaacagga gaattaaatt actattgtga
      661 atatcatccc gaaacaatga gaggaactat caaagtatct gaggctacgc agtaaacact
      721 tttcttaact cccttttcat tctgttgcaa tatatctaac aaaatcatat attagaaagc
      781 gtagagcttg aagtatggtt aatttccaca catcaaaaaa aatcaatgtt cctgcttccg
      841 acgtatgggt aattttatca gacactgata gggaaccaga attttggcat gggacaaaat
      901 cgattaataa tattagtaaa tcaggtaatt ctgtggaacg cgaagtcgtc atagccttca
      961 aggattcggt ttgtaaagaa acagttacaa tagaaccaat gaaatctgtt acgacagata
     1021 ttacagaagg accacttaaa ggaagaaaaa cggttgtaat taatgccgac ggtgagaagg
     1081 cctgtgttgt agacgtagaa tgggacattc gactttccgg attcatgggc atattttcaa
     1141 aaatggtcaa gaagcatatc cttgaaggta ccaacgatgc cttggatagg atatcaaaaa
     1201 tagtcgaaaa gtaatcaaat ttgtggatct gatgatttag ttaaatgtta aattaatcta
     1261 ctaatgttag cctaatgaaa catttataaa tatttctaac ttatttatat tgggtaaata
     1321 taatatttgt ctcatcctca agctattgta cttgttggtg taattatttc gattttgact
     1381 cttggagtcg taaccgttgt aggttctcaa aaggaagaaa atagtacttc caacacaaaa
     1441 caatttggtg ggcatacccc cggttacggt acttatgaaa ccactggaag tgttctagac
     1501 cctacttcat tgccaacaga tccaaaaaac tctgttgtgg atcccatgaa attccttcgt
     1561 gaatttaatc acggcagggt ttctcattct gctaatggca gtaccataag agattttaca
     1621 attatcgctt cagataaaag cacaaaagaa atttcaccag gcgtaaacta caatgtatgg
     1681 acattcaata acacggtacc aggaccaaca ctacgcgcaa cggaagggga tttgattaga
     1741 ataaatttca tcaataacgg ttcgggattt cataccatgc atttccacgg aattcatcct
     1801 gccgaaatgg atggtgtttt cgaaggtata gcacctggag gtaaattcac ttatgaattt
     1861 gtcgcagagc catttggagt atttccttat cactgtcata ttcaaccgct tgaagagcat
     1921 atttctcatg ggctttatgg cgcattaata atagatccca agaaaccaca tacaaatgca
     1981 gatgagatgg taatgataat gaacggatat gatactgatt ttgataccga gaacaacttc
     2041 tatacggtta atgggattcc atattattac atgcatcatc caatcaaaat tgagaaggat
     2101 aaattgatta gaatttattt agtaaatatg cttgaattcg atcccctgaa taattttcat
     2161 ttacatgcaa acttattcaa tttctacaag actggcacca acttggtacc tgacgagtat
     2221 acggatatag taacgctgaa ccaaggcgaa agagggattt tagaattttc gtacaagttt
     2281 ccaggaaaat atatgttcca tgctcataag accgaatttg ctgaaaaggg atggatggga
     2341 acatttttag ttacagagcc tgaaaatgca gttaatgctt ctagcttgac caacatcact
     2401 ggagtaatta caaatctaac aaatgggggt atatcataat ggaacgagaa agaggtataa
     2461 ttaaggaaaa tatttcaaaa aggaaaatag tgttttttgg catggttcca tttgcgatac
     2521 tcggtctgat gatcgtattg attttatcat accccacttt gttttttagt aaccagctta
     2581 aacctcttcc acaaatttca attgaaaaga tagaatttga acctttaaaa ataatagcta
     2641 ctgt
//
LOCUS       DASPFX010000153         2821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_678182, whole genome shotgun sequence.
ACCESSION   DASPFX010000153 DASPFX010000000
VERSION     DASPFX010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678182"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1419)
                     /locus_tag="VD694_03320"
     CDS             complement(<1..1419)
                     /locus_tag="VD694_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW11766.1"
                     /translation="MTNETKSGSNGFVSLKVTETNAKFVGKGMALIDPAIVEEMQLTT
                     GDIIEISTSSGKKKTFALLWSGQPEDYGLKIIRIDGYTRNNLGIGIDDHVRIRKAQDI
                     MKAEQVVVSPTEELNIAGIEEYLTEILEGRVVSRGDVIPLNIMGRKTGLVVNSVMPSG
                     TASAAYSIGKDTEFILSSLSKAGPRGGIPRVSYEDIGGLHNEVQKVREMIELPLRHPE
                     IFERIGIEAPKGVLLHGPPGTGKTLLAQAVANETNANYYSIAGPEIMSKFYGESEERL
                     RDTFKQAQDNAPSIIFVDELDSIAPKRDEVSGDVEKRIVSQLLTLMDGLEARGKVVVI
                     GATNRVNSIDPALRRPGRFDREIEIGIPDEEGRLDILHIHIRGMPLNEDVKLEYFAKV
                     THGFVGADLESLCKEAAMHSLTRVIPEINLEQTKIPIEVLNKIRIGNKDFEDALKDIH
                     PSAMREVQIQKPNVKWEDVGGLA"
     gene            complement(1489..2025)
                     /gene="hsp20"
                     /locus_tag="VD694_03325"
     CDS             complement(1489..2025)
                     /gene="hsp20"
                     /locus_tag="VD694_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HXW11767.1"
                     /translation="MWRDPWRYTSRIFEDADREFAEAEEMLNRMFRTVKEGSTAGTVT
                     SQLPYYYGYQINVGPDGKPHIREFGNVKPAARGLIEQSGVREPLVDTSVDEKNNQLTI
                     TAEMPGVSKEDIKVNISDTYITIQAEKGDKKYHTDVPINLALEDVSAKAAYSNGILEL
                     KIKLKQAPKPKGKEVKIE"
     gene            2213..>2821
                     /locus_tag="VD694_03330"
     CDS             2213..>2821
                     /locus_tag="VD694_03330"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HXW11768.1"
                     /translation="MSAEIGYFTKSNKTESTRYKNILSVSPSSSLSGKIRILMVSPEY
                     PPINGGVGRYTHNLVNELKRQGLDVYVACDNRGKGDFVGLSPNNMHNSEILLDLVNKI
                     KPDVVHIQYEPGLYGLELHSLRPNNIHTTIDLFYNECKIPIVTTFHSGYNFRQWMRIP
                     QIKINKKESLSISEKNPSNNKYNLLSSLKDRLDNISIYWKYLI"
BASE COUNT          788 a          605 c          439 g          989 t
ORIGIN      
        1 agccaatcct cctacatcct cccattttac atttggcttc tgtatctgca cttctctcat
       61 tgctgacgga tgtatatctt tgagtgcatc ttcaaagtct ttatttccaa tcctgatttt
      121 attcagtact tcgataggaa tttttgtttg ttccaaattg atttctggaa tcactctagt
      181 caaagaatgc attgctgctt ctttgcaaag agattccaaa tctgcaccta caaaaccatg
      241 ggttactttt gcaaaatact caagcttaac atcttcattc aatggcatcc ctctaatatg
      301 aatatggagt atgtcaagtc tgccctcttc atcgggtata cctatttcaa tttctctatc
      361 aaatctccct ggtcttctca aagcaggatc tattgaattt actctatttg ttgcacctat
      421 cactacaacc ttacctcttg cttcaaggcc atccatcaat gtcaacaatt gcgaaactat
      481 ccttttctct acatctccag atacttcatc tctttttggt gctatggaat cgagttcatc
      541 tacgaatata atagaggggg cattgtcttg agcctgctta aatgtatcac gcagcctctc
      601 ctcgctttcc ccataaaact tgctcattat ttctggacca gcgattgaat aataatttgc
      661 atttgtttcg ttggctacag cctgggccaa taatgtcttt ccagtccctg gtggtccatg
      721 cagaagaaca cctttaggtg cttcaattcc aatcctttca aatatttctg gatgtctaag
      781 aggaagctct atcatctctc ttaccttctg tacttcgtta tgtaaaccac cgatatcttc
      841 gtaagatact ctaggaattc cacccctagg tcctgcttta gataaagagc tcagtatgaa
      901 ctcagtgtcc ttaccaatag aatatgcagc tgacgctgtt ccagagggca ttacactgtt
      961 tacaactaga cccgttttcc ttcccataat attaagtggt attacatccc ctcttgatac
     1021 aactcttcct tccaatattt cagtaaggta ttcttctatt cctgctatgt tcagctcctc
     1081 tgttggcgaa acaactactt gctctgcttt cattatatct tgcgctttac gtattcttac
     1141 atgatcatct attccaatcc caagattatt tcgtgtatag ccatcaattc taattatttt
     1201 taatccataa tcttcgggtt gacctgacca taacaaagca aaagttttct tcttgccgct
     1261 agatgtagag atttctatta tatcacctgt ggttagttgc atttcttcta ctattgcagg
     1321 gtctataagt gccatacctt ttccgacaaa ttttgcatta gtttcagtta cctttaatga
     1381 tacaaaacca tttgaacctg atttagtttc atttgtcaaa cttgctattc acctcttatt
     1441 ggagattagt gataaaaaat ggatgtaatt atttgctgtc cgaatcgact attctatctt
     1501 tacttctttt cctttaggtt tcggtgcttg tttcaattta attttcagct ctagaattcc
     1561 gtttgaatag gcagcttttg ctgaaacgtc ttccagtgcc agatttatag ggacatctgt
     1621 atgatacttc ttgtcacctt tttctgcctg aatcgtaata tatgtatcag aaatattcac
     1681 tttgatatct tctttgctta cacctggcat ttcagctgtt atggtaagct ggttgttctt
     1741 ctcatctact gacgtatcaa ccaatggttc gcgtactccg ctttgttcta taagccccct
     1801 agcagctggt tttacgtttc caaactccct tatgtgaggc ttcccatctg gtcctacgtt
     1861 aatttggtac ccgtagtagt acggcaactg agatgtcaca gtacctgctg tcgaaccttc
     1921 ttttacagtc ctaaacattc tattcaacat ttcttcagct tctgcgaatt ctctgtcagc
     1981 atcttcaaaa attcttgatg tatatctcca tggatctctc cacattcacg atatcaccgt
     2041 tttcatttta cacagatcag atatttattc gttactaaca tgaggtgttt gtcaatcaaa
     2101 tgattagaat acattactga tattctattt aaatactcac ctcttgtgag taaagaataa
     2161 atatcatttt gtcaaattat gtagatctca aaaggttatg atgagaagta acgtgagtgc
     2221 agaaataggc tactttacta aatcaaacaa aactgaatca acaaggtaca agaacatttt
     2281 aagtgtttct ccatcatcat cattatccgg aaagattcgc attctgatgg tttcacctga
     2341 atatcctcca attaatggcg gagttggtcg atatacacac aatctagtaa atgaacttaa
     2401 gagacagggt ttagatgtct atgttgcatg tgataacaga ggaaagggag atttcgtagg
     2461 actctcgcct aacaatatgc ataattccga aattctttta gatttggtaa ataaaattaa
     2521 acctgacgtc gtgcatatac aatatgagcc tggattatat ggtctagagc tccattcact
     2581 tagaccaaat aatattcata ctacgattga tttattttat aacgaatgta agatcccgat
     2641 agtcacaacg tttcattctg gatataattt tagacaatgg atgagaatac ctcaaataaa
     2701 gataaacaag aaggaaagct tatcgatctc tgaaaagaat ccaagtaaca acaaatacaa
     2761 tcttctatca agcctaaagg atagattgga taacattagc atttactgga aataccttat
     2821 t
//
LOCUS       DASPFX010000154         2691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1435927, whole genome shotgun sequence.
ACCESSION   DASPFX010000154 DASPFX010000000
VERSION     DASPFX010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1435927"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            314..925
                     /locus_tag="VD694_03335"
     CDS             314..925
                     /locus_tag="VD694_03335"
                     /inference="COORDINATES: protein motif:HMM:NF014093.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit E"
                     /protein_id="HXW11769.1"
                     /translation="MSSNSLERTIDKVLSQKESALISEIDSALQNSLKNLESSKTSLQ
                     VEYDNIIGASKKQAENLKRQIIGSSTLNARNKELVIIESTIDDIFEKAKEKLAKSNNE
                     KNYEKLLTRMIQDSSTKLGSEIVIQCNKTDLNLVKKLVSQEVSNKKSKITVSDEVVDI
                     IGGIKAASVDGTMSLDNTLDSNIESLKPLIRKEIVQLLRGDNK"
     gene            926..>2691
                     /locus_tag="VD694_03340"
     CDS             926..>2691
                     /locus_tag="VD694_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HXW11770.1"
                     /translation="MVAKGRIVWVSGPAVKADGMSSVKMYETVEVGDSKLIGEVIRLT
                     GDVAFIQVYESTSGLKPGEDVIGTGQPLSVLLGPGIIGRIYDGIQRPLDEIAEKSGAF
                     IGRGLTTTPVDMKKKYMFTPSVKKDDTILGGSILGAVEETPLLTHKILVPPNYPEATI
                     TEIAKEGEYDLEHIIGHASSKNGDKIELKMYHKWPVRKPRPYSERFDPTIPLITGQRV
                     IDTYFPIAKGGTGAIPGGFGTGKTVTLHQIAKWADSKVVVYIGCGERGNEMTEVLVEF
                     PHLIDPRSQRPLMERTVLVANTSNMPVAAREASIYTGVTMAEYYRDMGYDVVLVADST
                     SRWAEALREMSGRLEEMPAEEGYPSYLASRLAEFYERAGRIRALGSPDRSGSVTLVGA
                     VSPSGADFTEPVTTHTIRFIKTFWALDTRLAYSRHYPSINWMNSYSGYLEDISKWWKE
                     NVSPDWYDLRAESYHILQREDTLKEIVRLLGPEALPDEEKLVLEVARMLKIGILQQNS
                     FDKVDTYCGPAKQLKLVRLMVMFYKEAQKALKEGKSLADIRALPIITTLLKAKFEVTD
                     EEISKLDEIEKQLSDSFKGNIE"
BASE COUNT          924 a          424 c          594 g          749 t
ORIGIN      
        1 agaactagta gacgtggtat cagagaaggc ggccatgatt agaggagaaa ttggaagacc
       61 agcatctgcc atttcaggtt actgtgacga atgtggcgaa tggtctgatc tgttgatgta
      121 ctctgaaggc acgtttacct gtgaagtatg tagaggatca tagtcatcaa attctgataa
      181 tttgaatata ggttgttcgg gctagtgcaa tacatataat acaagttaga atttcggatg
      241 acatcctatt tttggttttt ggggaaaact tttatcaaaa gattaaaatc acgtagttct
      301 gaaaaatcaa tgaatgagtt caaattcttt agagagaaca attgataaag ttctttcaca
      361 aaaagaatcc gcgttaattt cagaaattga ctctgcactt caaaattcac tgaaaaattt
      421 agaatcttct aagaccagtc tacaagttga atatgataat attattggag catcaaaaaa
      481 acaagcagaa aatctaaagc gtcaaataat tggttctagc acgttgaatg ctaggaataa
      541 agaactagtc atcatcgaat caactataga tgatattttt gagaaggcta aggaaaaact
      601 tgcaaaaagc aacaatgaga aaaattatga aaaattatta acacgaatga tacaagatag
      661 ctctacaaag ttaggttctg aaattgtaat acagtgtaat aaaactgact taaatctggt
      721 caaaaagtta gtatcacaag aagtttccaa taagaaatca aaaataaccg tatccgatga
      781 agtggttgat attattggcg gaataaaggc agcttctgtt gatggaacga tgagcttgga
      841 taacacactt gattctaata tagaaagtct caaaccttta ataaggaaag aaatagtcca
      901 actgcttaga ggcgataata agtagatggt ggcaaaagga agaatagttt gggttagcgg
      961 tcccgcagta aaagccgatg ggatgtcttc ggtaaaaatg tatgagactg tggaagtcgg
     1021 tgattcaaaa ttaattggtg aggttattag gttaacggga gatgtagctt ttattcaagt
     1081 ttatgaatct acatctggtc ttaagcctgg tgaagatgta attggtactg gtcaaccact
     1141 ttcagttctt ttaggtccag gtattattgg cagaatttat gatgggattc agagaccatt
     1201 ggacgaaatt gccgaaaaat ctggagcgtt cattggtagg gggcttacta ctactcctgt
     1261 tgatatgaag aagaagtaca tgttcactcc ttcagtcaaa aaagacgata caattctggg
     1321 aggatcaata cttggcgcag ttgaagaaac tccactttta actcataaaa ttttagttcc
     1381 accaaattat cccgaggcaa ctattactga aattgccaag gaaggagaat atgatctaga
     1441 acatatcatt ggacatgcta gtagcaagaa tggcgacaag atcgaattaa agatgtatca
     1501 caaatggcct gttagaaagc cacgtccata ttctgaaaga ttcgacccta caataccgct
     1561 aattactgga cagagagtta ttgacactta tttcccgatt gcaaaaggtg gaactggcgc
     1621 tattccaggc ggattcggaa caggaaagac tgtgacattg catcaaatag ccaaatgggc
     1681 agattcgaag gttgttgtct acattggctg tggagaaaga ggtaatgaaa tgacagaggt
     1741 actagtggaa tttccacatt tgattgatcc aagatctcaa agaccattaa tggaaagaac
     1801 agttctcgtt gctaatacaa gtaacatgcc tgtggccgct agagaagcat caatctatac
     1861 gggtgttact atggcagagt attatagaga tatgggttac gatgtagtac ttgttgctga
     1921 ctctacaagc agatgggcag aagcgttaag agaaatgtca ggtcgattgg aagaaatgcc
     1981 tgctgaagaa ggttacccat cgtatttggc gtcaagactc gcagagtttt atgaaagagc
     2041 gggtcgaatt agagcacttg gttcaccaga tcgttctgga tctgtgacac tggttggtgc
     2101 agtatctcca tcaggagccg attttactga accggtgaca acacacacaa ttagatttat
     2161 caagactttt tgggcactag ataccagatt ggcatattct agacattatc catcaattaa
     2221 ttggatgaat tcttactctg gttatcttga agacatttcc aaatggtgga aagaaaacgt
     2281 aagccctgac tggtatgact tgagagcgga atcatatcat atcctgcaac gtgaagatac
     2341 gttaaaagaa atcgtcagat tattaggacc cgaagctctt cctgatgagg agaaattggt
     2401 tttagaagtc gctagaatgc tcaaaatagg tatcttgcaa caaaactctt ttgataaggt
     2461 tgatacctat tgcggtccag ccaaacaact gaaattggtt cgacttatgg taatgtttta
     2521 taaagaagca caaaaggctc ttaaggaagg aaaatccttg gcagatatca gagctttgcc
     2581 gataataaca acattgctaa aagcaaaatt tgaagttact gatgaggaga tttctaaatt
     2641 ggatgaaatt gaaaagcaac tatctgattc attcaaaggt aacattgagg a
//
LOCUS       DASPFX010000155         2536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_809779, whole genome shotgun sequence.
ACCESSION   DASPFX010000155 DASPFX010000000
VERSION     DASPFX010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_809779"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..249
                     /locus_tag="VD694_03345"
     CDS             88..249
                     /locus_tag="VD694_03345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11771.1"
                     /translation="MSTTASISIDCKTNRHLECTDCMCQCHIPGTMENLAKKIARLER
                     ETPGVGESL"
     gene            complement(263..862)
                     /locus_tag="VD694_03350"
     CDS             complement(263..862)
                     /locus_tag="VD694_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HXW11772.1"
                     /translation="MKIESALRDQYRKLAKDQGYRSRSAYKLLEINNKYNVIKPNDTI
                     LDIGCAPGGWLQVAKKISGPDGTIVGIDISPIKAITGISTIQVDIEDQNLINKIRSNV
                     TLSFDVVLSDLSPKVSGIWHFDHERQISLTLVALQISSNLLKPGGNALFKIFDGSNSG
                     DVIKEAAKLFLKVITSKPKASRQKSSEFYIVCSSFKGKS"
     gene            complement(1020..1166)
                     /locus_tag="VD694_03355"
     CDS             complement(1020..1166)
                     /locus_tag="VD694_03355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11773.1"
                     /translation="MFGKAKCKLCGQRVRFALRHLNQKHPEVLDDKDVAKLKMESIMK
                     KYFV"
     gene            complement(1271..1423)
                     /locus_tag="VD694_03360"
     CDS             complement(1271..1423)
                     /locus_tag="VD694_03360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11774.1"
                     /translation="MSTEQSSKTAERQNLWRCETCGKSFDSEDTLKYHKLLEHSEHKR
                     PPIGIG"
     gene            1623..1790
                     /locus_tag="VD694_03365"
     CDS             1623..1790
                     /locus_tag="VD694_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L40e"
                     /protein_id="HXW11775.1"
                     /translation="MPITDANKKQIAQQRRLFYKICFDCGGKNPILASRCRKCHGKNM
                     RLKNRTLGAKK"
     gene            1871..>2536
                     /locus_tag="VD694_03370"
     CDS             1871..>2536
                     /locus_tag="VD694_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase N-terminal
                     domain-containing protein"
                     /protein_id="HXW11776.1"
                     /translation="MPIRTGEEYIQSLRGRNMKVYLFGELVNEPVDHPMIRPSINAVA
                     ETYDLAAKDPELATAESGINGNQVNRFLHIAESAEDLVNQNRMQRRLGQLTGTCFQRC
                     VGMDALNSLYSTTFEIDKKFGTPYHDRFKKFVKKMQDDNLVIGGAMTDVKGDRSLSPS
                     QQEDPDLFVHISKRDQNGIYISGAKAHQTGCINSHWILVMPTMRLKDEDKQYAIVGAI
                     PADA"
BASE COUNT          820 a          461 c          452 g          803 t
ORIGIN      
        1 aatctaatgt aaaaaagtgc aaatctctca taaatatagg gaatttaaga aaagactata
       61 atacgcatcg ttctatcctc attagtaatg agtacaacag cctccatttc cattgactgt
      121 aagaccaata gacatctcga atgtacagac tgcatgtgtc aatgtcatat acctggaaca
      181 atggagaact tggcaaagaa aattgcaaga cttgaaagag aaactcctgg cgtgggagaa
      241 tcactctaag tctattttta tttcagctct ttcctttaaa agatgagcaa actatataga
      301 attcactgct cttttgtctg ctcgcctttg gtttggatgt tattactttt aggaataatt
      361 ttgcagcttc cttgataaca tcccctgagt tacttccatc aaatatcttg aaaagcgcat
      421 taccgcccgg tttcaaaagg tttgatgaaa tttgcaatgc aactaacgtc agagatattt
      481 gtctttcgtg atcaaaatgc catatcccac taacttttgg agatagatct gataatacaa
      541 catcaaatga aagtgtaacg ttactccgta ttttatttat taaattctga tcttcaatat
      601 cgacttgtat tgtggaaatc cccgtgattg ctttaatggg gctgatgtct ataccaacaa
      661 tggttccatc tggacctgat attttttttg ccacttgcag ccaaccgcct ggagcacaac
      721 caatatccaa aatggtatca ttcggtttaa ttacattgta tttgttattt atctctaaaa
      781 gtttgtacgc agatctgctg cgatagcctt ggtctttggc taatttcctg tactgatccc
      841 ttaaggcact ttcaatcttc aaataataag aatcactttc tccattgttt tttcaaattt
      901 tattggattg cattcattca aataattctt gttaactcct attaaattga acacataaca
      961 tccatccatt ttagatataa atatgacttt caaaaatttt accccatttg ttgatcatac
     1021 tacacaaagt atttcttcat gatgctttcc atttttaact tggcaacatc tttgtcatct
     1081 aaaacctcgg gatgtttttg attcaaatgt cttagagcaa acctaactct ttggccgcat
     1141 aatttgcatt tcgctttgcc aaacatcaaa gacatagtac ttcatacggt aataaaaatt
     1201 gctaactaga ataataaatt gaatgaatta gaatactgac tacggtagag gcaaatgaac
     1261 tcgtggatag ttatccgatt ccgattgggg gccgtttgtg ttcgctgtgt tcgagtaatt
     1321 tgtggtattt tagcgtgtct tcactatcaa atgactttcc gcaagtttca catctccaca
     1381 gattttgcct ttcagcagtt ttacttgact gctcagtaga catggtatta ttaacgcggt
     1441 cattgcaaat aaggttttca ggggtggatc taaaaacgga atttaaatgg acaataccct
     1501 tgatttcctc gtacttttgc ccctagctgc catctccaga atggcttcag gtgctctacc
     1561 attgtcataa tgtgccctaa attcgaaaaa caaaaattta ggataaaaaa aatcatgagt
     1621 aaatgccaat aactgacgct aataaaaaac agatagccca acaaaggagg ctattctata
     1681 aaatatgctt tgactgcggc ggtaaaaatc cgatacttgc ctctagatgc agaaaatgtc
     1741 atggcaaaaa tatgaggctg aaaaatagga cgctgggagc caagaaataa gacatctttt
     1801 ttaggtgtag aattttccga atttttttaa aaatatataa atattatcaa ggtgaattct
     1861 aattataacc atgccgatta ggacagggga agagtatatt cagagcttga gaggacggaa
     1921 tatgaaagtt tacctttttg gtgaacttgt aaatgaacca gtagaccatc ccatgataag
     1981 accctcaatt aacgcggtgg ctgaaacata cgatcttgcc gctaaagatc ctgaattggc
     2041 aactgcggaa tcaggtatta atggcaatca agtaaataga ttcttgcata ttgcagaaag
     2101 tgctgaggat ctggttaatc agaatagaat gcaaagaaga ctaggtcaac ttacaggtac
     2161 ttgttttcaa agatgtgtcg gaatggatgc tctaaattcc ttatattcaa caacttttga
     2221 aattgataaa aaatttggca ctccttatca tgatcgattc aagaaatttg taaagaaaat
     2281 gcaagatgat aatcttgtca ttggaggcgc tatgacagat gtcaaaggcg atagaagttt
     2341 aagcccctca cagcaagaag atccagacct ttttgtacat atctctaaaa gggatcaaaa
     2401 tggaatttac atatctggtg caaaagcaca tcaaactgga tgtattaatt cacactggat
     2461 tttagtaatg ccaactatgc gattaaaaga tgaggataag caatatgcta tagttggtgc
     2521 tattcctgca gatgca
//
LOCUS       DASPFX010000156         2575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1973750, whole genome shotgun sequence.
ACCESSION   DASPFX010000156 DASPFX010000000
VERSION     DASPFX010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1973750"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(350..475)
                     /locus_tag="VD694_03375"
     CDS             complement(350..475)
                     /locus_tag="VD694_03375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11777.1"
                     /translation="MEDKIRKCVLAGSKNNRTGSTEEEIVKESEQTKYDLVVMAT"
     gene            complement(1288..2220)
                     /locus_tag="VD694_03380"
     CDS             complement(1288..2220)
                     /locus_tag="VD694_03380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11778.1"
                     /translation="MNRITSLFYSFLVVFLIFQICAISSPATIDPDLTINKLADASSE
                     NGNSNSLPSSSDSTTNDVFGIKEIYPTKSGGREWFINMNDPRSDGIFYITSDLNITQQ
                     ADGSWRINNTNVRMNVDTPPNAEPWKDVEITGYARVVDAIPIEGNPEAATDDFDLNWL
                     ARGGEHNTNNPCEGSAYTAILDINGTVGWKKEIWFPGGYTDDRGTEDKLKDSLLNRWV
                     GFKAIMYNTNNNTAVKLESYIDNRNTNYWVKVTDLLDNGDWYAKAPDSEFNSADCGRP
                     KNYVLTNGGSIATFRSDNLIWDFKNLSVREIQAP"
BASE COUNT          745 a          505 c          457 g          868 t
ORIGIN      
        1 acataaaaaa ggaacgtcat tcttattgat ctgatatcta ggcataagga aatctcggga
       61 ggcccaacaa taactaccta ttgagtctcc cttggcagga cttgcgcgta gtcttacatg
      121 aaaacaaaat agtattaaag acatgattaa caaggttatg cgatactaca acaaagaccg
      181 cggaagactc aacgaacaaa tgaatcgggg tgaccattga atctaggacc tttccatgtt
      241 actggaggtc tatacttttt ctattgcact gtaagtacag gtgtattgat attacttatt
      301 gtttttcctg gtttcactaa acaatgatct catccaagaa tcaagatgat taggttgcca
      361 taactactaa atcatatttg gtctgttcac tttcctttac tatttcctct tctgtactgc
      421 cggtacggtt attcttgcta cctgccagta cacactttct tattttatct tccatggcat
      481 ttactaattc gccttcaacg cttcaattta tattttgttt atcatcctga gttactttta
      541 ccggggtatc tcctaatttg ccaacatctc ccattacacg caaaatgaca atttctgctc
      601 cagaaagata cgacatatat atcgcatgat ttagtgcttt atctgatatg tcttttccgt
      661 cgtcaggtac ctagatcttt ttataacaag gaatgtttgc cttagagata gaataatcaa
      721 catccgttgc ttgtgtcgat tctgcaacgt aatcttgtcg tgggctttcc acgtaagacg
      781 atgaagaaac cgtatcatca tatgtgctca taggagttac attatacagt aaattattta
      841 tcaatttgat aattgatact taatattgtg tcaggagtag acagaacatg cgttggccct
      901 ttcttctttt ggttaatctt gcatgcagtg ctactattca gagaaaagac cttaattcgt
      961 agtttacttc aaaaattaaa ttgagatata aagaattata ccacttgcaa tcgcttgcaa
     1021 gacaatggtt gctatcaaaa tctagatgat tgtttttagg taatacaaag ccctgtatta
     1081 tacttcaaga ttagcggaag cggctttgca gagttacaaa atgatatgag atcttcactc
     1141 gatgttaaat aaatttctag caggttattg tcgtaagtta ctaactacat tctgagttcc
     1201 attgaactgg cattatatct gttgttgtaa ctgactttta tcaatgggga tacaggttag
     1261 acctaactat atgcaatagc tctgagccta cggtgcttgt atttccctaa cacttaggtt
     1321 cttaaagtcc cagattagat tatctgatct gaaagtggct atggaaccac cgttggtaag
     1381 gacataattt ttaggtctac cgcaatctgc actgttaaat tcactatcag gagcctttgc
     1441 ataccaatca ccgttgtcta aaaggtctgt gaccttcacc caatagtttg tatttcggtt
     1501 atctatgtag gattccagtt tcactgctgt attattgttg gtattataca ttattgcttt
     1561 aaaccctacc cagcggttaa gcagggaatc cttcagtttg tcctccgtgc ctcgatcgtc
     1621 ggtataacct cctgggaacc agatttcctt tttccatcca actgtcccat ttatatccaa
     1681 gattgcagta tatgccgagc cttcacaagg attatttgtg ttatgttctc cacctcgtgc
     1741 caaccaattt agatcaaaat catccgtggc cgcttctggg tttccttcaa taggaattgc
     1801 atctacaacc cttgcgtatc ccgttatctc cacatctttc cagggctcag catttggagg
     1861 agtatctaca ttcatacgga cgttcgtatt gttaatgcgc caagaaccgt ctgcctgctg
     1921 agttatattt agatcagatg taatataaaa tatcccgtca cttcggggat cgttcatgtt
     1981 gataaaccat tcccttccac cgctcttcgt tggatatatt tcttttatcc caaagacatc
     2041 gtttgtcgtt gaatcggaag acgaaggaag actattactg ttcccatttt cgctactggc
     2101 atcagccaat ttattgatgg taagatctgg atcaattgtt gctggtgagc tgatagcaca
     2161 tatctggaaa ataagaaata ccactaggaa actataaaaa agcgaggtaa ttctgttcat
     2221 tttgaaatgt atatttcgca tccgtaagta aatcttgtgg tgaactttta ggtcttatac
     2281 cttgattcat tcgtatggta atatttatgc taggaaaagt tttaatcttg aagaatcaac
     2341 aatgcatagt tatcaatgac catttgaaac tctgaagata tactccacat ggaccaatga
     2401 cgacgaataa gcttacatga taataaatgg agaataattt tgcttctata gcgattataa
     2461 agatatatct tttctcggtc gttagcatgt tgaaaaaaag ataaacttgg ctttctaaaa
     2521 cggaaggctg ataacaattt atactattat acttgctgaa ttactggtta atatc
//
LOCUS       DASPFX010000157         2526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_288598, whole genome shotgun sequence.
ACCESSION   DASPFX010000157 DASPFX010000000
VERSION     DASPFX010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288598"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..256)
                     /locus_tag="VD694_03385"
     CDS             complement(<1..256)
                     /locus_tag="VD694_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11779.1"
                     /translation="MTFKKCTLVSLLVLLLGFKILILNNTRQVLYYDLLFQKIYARTA
                     GFNEIAPKWANKIMTFRQEGFPFPLSLAWWKLYFALDSPSK"
     gene            complement(268..783)
                     /locus_tag="VD694_03390"
     CDS             complement(268..783)
                     /locus_tag="VD694_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11780.1"
                     /translation="MIISIISVIAGTSLLMTGAVAQQGPTETDIESPQFLAILHAQSG
                     TIAEINSTLYTLQLNELADKTILFSDRPNRIVITQSIQDFVGNWTSGDDSFQVDPPNA
                     ALILTDDQDNVFEIELFNPQYDNNEKSLRFDFSVLGNDTSSRDLPANLGKSVLIIDSY
                     ESRWPLAYSGN"
     gene            complement(863..1786)
                     /locus_tag="VD694_03395"
     CDS             complement(863..1786)
                     /locus_tag="VD694_03395"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HXW11781.1"
                     /translation="MLGLGLNYSSFFNSNIIIGYVSAIVAAVLFGCVSTIGKPILSTV
                     DPLLLSSIIYLTAGLFFTPSAVRISSKITKKYFFLIIISAISGATIAPIVFFQGLKMS
                     TAADTALLANGETVFSILFALLIFRERLRPVGYIAVTLILIGVFLVTTNLDFHSSIFS
                     LNIGNVLVILSTIIWGFDNNICKVIVRQIHISRLIQLKALIGGTILIGTVVISGIPFN
                     IHSEQLIPIILLGVFGFAISLYLYLHSIKRIGVIKASSILSLSAVFGLIFAIIFLRET
                     IGINQVIAISVMILGIHLMYMYEKKNEIILK"
     gene            1916..2134
                     /locus_tag="VD694_03400"
     CDS             1916..2134
                     /locus_tag="VD694_03400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11782.1"
                     /translation="MKILLEIIGIVLVLAGLVFTAQSESYIGPQSSFMYSNPSWTING
                     LMIIIAGVIVLVADIIIRIVYHPNPKIK"
     gene            2301..>2526
                     /locus_tag="VD694_03405"
     CDS             2301..>2526
                     /locus_tag="VD694_03405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11783.1"
                     /translation="MKHLPVSFYFLLPILLFFTLFIIGIYAQDENNENVISLKSSPVI
                     NSGSFPIGIDINPITNKLYVANQFSNTISVI"
BASE COUNT          882 a          426 c          394 g          824 t
ORIGIN      
        1 atttcgaagg actatctaaa gcaaagtaaa gtttccacca agccaatgat aacggaaatg
       61 gaaacccttc ttgtctaaac gtcataattt tatttgccca cttgggagca atttcattaa
      121 atcctgcagt tcgtgcatat attttctgga acaacaagtc ataatacaat acttgtcggg
      181 tattattaag tattaaaatc ttgaagccta ataaaagtac taaaagggaa acaagagtac
      241 attttttaaa tgtcaaaatt atcagttcta atttcctgaa tatgcaagtg gccatcgaga
      301 ttcataagaa tctattatta agactgattt tcccaaattg gcaggaagat cgcgagacga
      361 tgtatcatta cccaaaacac tgaaatcaaa ccttaatgat ttttcattat tatcatattg
      421 aggattaaat aattcaatct caaaaacatt atcttggtca tctgtaagta ttagagctgc
      481 attgggtgga tctacttgaa aactatcatc accacttgtc cagttaccga caaaatcctg
      541 tatggattga gtaattacta ttctatttgg tctatcagaa aacaaaattg tcttatccgc
      601 caattcattt aactgcaatg tatacaaagt agaattaatt tctgctatcg tgcctgattg
      661 agcatgtaga attgcaagga attggggaga ttcaatatca gtttctgtag gtccctgttg
      721 agcaactgcc cctgtcatca acaatgacgt gcctgcaatg actgaaatta ttgaaataat
      781 cataaatata acaattctat aatggatttt catcacgtcg aattaggatc ccgtacttat
      841 atcttttagt atcctcaaaa tactatttga gaattatttc atttttcttt tcatacatat
      901 acatcaaatg tattccaagt atcatcacag atattgcaat aacctggttg ataccgattg
      961 tctcgcgtag aaatatgata gcgaaaatta gtccgaatac cgcagataaa gagaggattg
     1021 atgatgcctt gataacacca atcctcttta tactatgtag atagaggtat agtgatatgg
     1081 caaatccaaa aacaccaaga agaattatag gtattagctg ttcactatga atattaaaag
     1141 gaattcctga aataactacc gtacctatta atatagtacc tccaatcaag gctttcagct
     1201 gaattaacct tgagatatgt atttgtctga caattacctt gcaaatatta ttgtcaaatc
     1261 cccaaataat tgttgacaaa ataacaagaa cgttacctat gtttaaacta aatatcgaac
     1321 tgtgaaagtc tagatttgtt gttaccagaa atactccaat tagaatcaat gttactgcga
     1381 tatatcctac gggtcttaat ctttctctaa aaataagcaa agcaaacaaa attgaaaaga
     1441 cagtttctcc gttagcaagt aatgcagtgt ccgcagccgt actcatcttc aatccttgaa
     1501 aaaagacaat tggtgctatt gtggcaccag agattgcact tatgatgatg agaaaaaagt
     1561 acttttttgt aatctttgat gatatcctta cagccgaagg tgtaaaaaat aatccagcag
     1621 ttaagtaaat aattgatgaa aggagtaaag gatcaactgt cgatagaatg ggttttccta
     1681 tagtagaaac acatccaaag agaacagcag caacaatagc cgaaacatat ccgattatta
     1741 tatttgagtt aaaaaaacta ctataattca accctaatcc tagcattcat gacggacatc
     1801 taataggtat taaaacctat tcatgctgta tgcttatggt tactaagaat gtaaatgaaa
     1861 taatgaattt caaaaactta tagatgtgct gatttcaata ttcatcagat aatagatgaa
     1921 gatattactt gaaatcattg gtattgtact tgtactggca ggtttagttt ttactgcgca
     1981 gtccgaatca tacataggtc ctcaaagttc attcatgtac agcaatcctt cctggacaat
     2041 aaatggtctg atgattatca tagctggagt tatagtatta gttgcagata ttatcatcag
     2101 gatagtttat catccaaatc caaaaattaa gtgagataaa ctagatcatg gaaatccttc
     2161 ttcatgaatt gttattggag ataggataat tcttatcttt tttccatatt tgtagaacta
     2221 ttttctggaa acaggaataa atcatagata gttgggaact ggtaattact ttttataccc
     2281 attcaacata gaatatttat ttgaaacatt taccagtatc tttctatttt ttattgccta
     2341 ttttactctt tttcactctt tttatcattg gtatttacgc tcaagacgag aataatgaga
     2401 acgtaatatc cctaaaatct agcccggtaa ttaactctgg cagttttcct ataggaattg
     2461 atatcaaccc aataacaaac aaactttatg ttgctaacca attttctaat acgatatcag
     2521 ttattg
//
LOCUS       DASPFX010000158         3352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1295401, whole genome shotgun sequence.
ACCESSION   DASPFX010000158 DASPFX010000000
VERSION     DASPFX010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1295401"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            288..1694
                     /locus_tag="VD694_03410"
     CDS             288..1694
                     /locus_tag="VD694_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HXW11784.1"
                     /translation="MKFGGSTLGEDGVCIDKILQRISNKIGGQGKVVAVFSAPLIRYR
                     DKLSSMTDVAIHIGKNYAQSNPIEIDVLREVYENIASNNLSQEYRKKFSDHINKFHKE
                     VIVSLKQAAENRRFVDVTRSRTLAYSGEIPMSYLMDYFLRSNQIKSDHADIEQWPIIT
                     DDNFEAANFLIEESRQKSKHFYELIEKNSVVTIGGFIGKTTDGLETTYERGGSDRSAA
                     DVAILLNEKYKAELDFEKDNAVLSADPKIVKQELDSIKFLSYNEARLAGMFGMKILDP
                     LAIKEIDNNNMDIPIVITNMNDPSNTTTISKISADQSDNLVKIVTGKRNCAIVRMETI
                     AASHLLASLESYRQYHDFLKLSPYKKDGTEITRVLFLDGDYVRRNEHHFKAYYPKTEI
                     VYDRGVVTLIGDNMWKMPKIASTTSSTVGEHGINILNLDAQEETSRILIIVDDSKVAD
                     AIRAIHNKRNRIDPDEIQ"
     gene            1691..2605
                     /locus_tag="VD694_03415"
     CDS             1691..2605
                     /locus_tag="VD694_03415"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HXW11785.1"
                     /translation="MNDKGKIWMDGKFVEWNNAKIHILTHGMHYGTAVFEGIRCYDTK
                     KGPAIFRLKDHVRRLTNSCKMYYMTMQFSEKDLADAIVETVRVNNVKECYIRPLCYYG
                     YGKMGVNPLPNKVSASIALWDWEDHIITEGNKGMRVIVSSWTRIDSRSLPMHAKATAN
                     YANSALARIEAIKSGADEAIMLNMSGMVVEGTAENIFLVRDNTLITPPLTSGALDGIT
                     RSTVLSIAKDIGISFQICDITRDQMYYADEVFLTGTAAGIKSIGEIDKIIIANGKVGK
                     IAKQLQDIYNQIVHGEIEKFEKWLTYVN"
     gene            complement(2690..>3352)
                     /gene="pyrB"
                     /locus_tag="VD694_03420"
     CDS             complement(2690..>3352)
                     /gene="pyrB"
                     /locus_tag="VD694_03420"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HXW11786.1"
                     /translation="QDTVRVMDLYSDIIILRHQLDGSSKFAAEISDHPIINGGSGSEE
                     HPTQAMLDLYTMIKEKKKIDGLKICILGDLKYGRTIYSLLYGLSNYDVEIILVSPPTL
                     QIRQESIFGLKNKMKIVELVEMNEKVFRDTDILYVTRIQKERFSDPQEYEKVKGAYTI
                     DSNILKQFKSDIAIMHPLPRIDEISQDVDSKTNAIYFKQASYGKDLRSALLALILNES
                     PL"
BASE COUNT         1164 a          549 c          648 g          991 t
ORIGIN      
        1 gataagcaga acttatttag tctaaaaaga taatacaagt tgagtaattt tagaactagt
       61 tatttacaaa cattttgttt tagatcattt ggaaaataat tcatccggat tataatccaa
      121 gctaattaat gaaactggcc aatactgcat attagttatt agtcaagtaa taaattttga
      181 gatctaaaat cccacctgag atctggattt tggggtaaca ggttacctaa tatatggtat
      241 agaataatcc aattttaaga taggttagtt tgggaacagt cactgtaatg aaatttgggg
      301 gaagtaccct aggggaagac ggtgtatgca tagacaagat acttcaaaga ataagtaata
      361 aaataggagg tcaaggcaag gtagttgcgg tattttcagc acctttgatc cggtatagag
      421 ataaactaag ttctatgact gatgtggcca ttcacatcgg aaagaactat gcccagtcaa
      481 atccaataga gatcgatgta ttacgtgagg tatatgaaaa cattgcatca aataatcttt
      541 ctcaggagta tcgaaagaag ttttctgatc atattaataa gttccacaaa gaagttatag
      601 tttcgttaaa gcaagctgca gaaaatcgta gatttgtaga tgttactagg tcaagaactc
      661 ttgcatatag tggagagata ccaatgtcat atctgatgga ctatttttta aggagtaatc
      721 aaataaagtc cgaccacgcg gacattgaac aatggccaat tattactgat gataattttg
      781 aagctgcaaa ttttttgatt gaagaatcaa gacaaaaatc aaaacatttc tatgaattaa
      841 tagaaaagaa tagtgtagta actataggag gctttatcgg aaaaacaacg gacgggttag
      901 aaactactta tgaaagagga ggttcggata gatctgcagc agatgttgcc atattgttaa
      961 acgaaaaata caaagcagaa ctagattttg aaaaagataa tgccgtactc agtgctgatc
     1021 caaaaatagt aaagcaagaa ctggatagta tcaaatttct ctcttataac gaagcaagat
     1081 tagcaggtat gtttggaatg aaaatacttg atcccctggc aatcaaggaa attgataata
     1141 acaatatgga catacctatc gtaattacaa atatgaatga tccgtccaat acaacaacca
     1201 tatcaaaaat ttctgccgac caatcagaca atcttgtcaa gattgttact ggaaagagaa
     1261 attgtgccat agtaaggatg gagactatag cagcctcaca tttgttggca tcacttgaaa
     1321 gctacagaca gtaccacgat tttctcaaac tatctccgta taagaaagat ggaactgaaa
     1381 tcactagggt tctattcctt gatggagatt atgttcgacg aaacgaacat cacttcaaag
     1441 cttattatcc caaaacggag atagtatatg acaggggagt tgttactcta attggtgata
     1501 atatgtggaa aatgcccaag attgcttcaa ctacaagcag cacagttggt gagcatggaa
     1561 ttaatatttt gaatttggat gcacaagaag agacttcacg tatcttaatt attgtcgatg
     1621 attccaaggt agctgatgcc atacgggcaa ttcacaataa gagaaataga atagatccgg
     1681 atgaaattca atgaatgata aaggtaagat atggatggat ggaaagttcg ttgagtggaa
     1741 caatgcaaaa attcacatct tgacacatgg gatgcattat ggtactgcag tgtttgaagg
     1801 gattcgctgc tatgatacaa aaaaaggtcc tgctatcttt cgattaaagg accatgtcag
     1861 gagacttact aacagttgca aaatgtatta tatgactatg caattttctg agaaggatct
     1921 tgcagatgcg atcgttgaga ctgttagggt taataatgtc aaggaatgct acatacgacc
     1981 tttatgttat tatggatatg gaaaaatggg agttaatcct ttacctaaca aagtatcagc
     2041 atctattgcc ctgtgggatt gggaagacca tataataact gaaggaaata aaggcatgag
     2101 agttattgtc tcttcttgga ccagaatcga ttcaagaagc ctgcctatgc atgccaaggc
     2161 tactgcaaat tatgcaaact cagcgttagc tagaattgag gctataaaat caggggctga
     2221 cgaagcaatc atgctgaata tgagtggaat ggtggtggaa ggaaccgcag aaaatatttt
     2281 tttggtaaga gacaacaccc tcattacacc tccccttact tcgggcgcat tggatggtat
     2341 aacccgctca accgtattat ccattgcaaa ggacatcggt atcagctttc aaatttgcga
     2401 cataacacga gaccaaatgt attatgcgga tgaagtattc ttgaccggaa cagctgctgg
     2461 aatcaaatca atcggagaaa tcgataaaat aataattgct aatggcaagg tcggcaaaat
     2521 tgctaaacaa ttgcaagata tttacaatca aatagtacat ggcgaaattg aaaaattcga
     2581 gaaatggctc acatacgtca attgaatgaa aagaattgat tcaatctttc atttttcatt
     2641 acataaacaa cagagttccc aaaaaatgac aagtattgta taaaaatcct cagagaggtg
     2701 attcattcaa tatcaaagcg agtagtgccg atcttagatc tttaccataa gacgcttgct
     2761 taaagtagat cgcattagtt ttactatcaa catcctgtga tatttcgtct atcctcggta
     2821 atggatgcat tatggcaata tcagatttga attgtttcag aatgttacta tcaattgtat
     2881 acgccccttt aaccttttca tattcttgag gatctgaaaa cctttctttt tgaattctcg
     2941 taacatacaa gatgtctgta tctcgaaata ccttttcatt catctcaact agttctacaa
     3001 ttttcatctt atttttcaat ccaaagatag actcttgtct aatttgtagt gttggtggag
     3061 aaactagaat gatttcaaca tcataatttg aaagtccgta taataaagag taaatggttc
     3121 gtccatattt caaatcaccc aagatgcaaa ttttcaatcc atcaattttc tttttttctt
     3181 ttatcatagt gtataaatca agcattgctt gagtcggatg ttcttcactt ccacttcctc
     3241 cattaattat cggatgatca gaaatctctg cggcaaattt actagacccg tcaagttgat
     3301 gccgaaggat tatgatatct gaataaagat ccattacccg tacggtgtcc tg
//
LOCUS       DASPFX010000159         3543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1472371, whole genome shotgun sequence.
ACCESSION   DASPFX010000159 DASPFX010000000
VERSION     DASPFX010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1472371"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(630..1613)
                     /locus_tag="VD694_03425"
     CDS             complement(630..1613)
                     /locus_tag="VD694_03425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11787.1"
                     /translation="MHIWDQAGVAFILAKFQRINGNESKVIRVQNADKYGIDEYYKEF
                     GVFITSEELVYKSIEEARRADVIHIHSLPEMVTNIRNIYKKSKVIILHYHGTDIRGFS
                     KEDNSQTSNLRNILRSKNIVRKIRKRRLHIKAQRLADRVIVSTPDLIQLVKGSIFLPN
                     PIDTDHFNNKIAKERSVGVYKGLFVNSEVTDIKLAMNYCKRKKIDLNIDIHDRTKNPI
                     CYKDIPNFLKKYDVYVDLRFVNQKLLKDLSKTALEALACGLRVLNYNLEYVEDLPSEH
                     CPTNVIKTLSSIYSNKRKRTETIKLELELAILNMIDGIPILVRKLLKRGQI"
     gene            complement(1834..2196)
                     /locus_tag="VD694_03430"
     CDS             complement(1834..2196)
                     /locus_tag="VD694_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11788.1"
                     /translation="MQYVKTNSVYYFGEDGKLVDHEGSWLHDSDNTRAGLIMPGTILF
                     GSRYYQEIAPDVALDKTEIVNMNRTVKVPAGSFDNVIKMIETNDLEPGTEEANLPAHR
                     VGQVIDNDMKLVRYGYIK"
     gene            complement(2177..2560)
                     /locus_tag="VD694_03435"
     CDS             complement(2177..2560)
                     /locus_tag="VD694_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11789.1"
                     /translation="MKTRSNFETDVICIASAIILISIIVLFTTISMKVNAQNESWTNS
                     FNIGDCNFSTIGTNPYFILQPGYQLVFAGVEDNEPLIVTVTVSNETKVVGEGIVARAV
                     EERTVDSKTGDLKELTKDCFAICED"
     gene            2952..>3543
                     /locus_tag="VD694_03440"
     CDS             2952..>3543
                     /locus_tag="VD694_03440"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HXW11790.1"
                     /translation="MPTPIIEKILNEGAEIYCERRGNGPILLMIHGAMEDAGYYSSAA
                     EILANKFTAVSYDRRCNSRSSGDRSVDMTVAQQARDAASIIKAMGNGKAIVVGRSGGA
                     IIGLELAATMPEIIDFLIIYEAPVIEMLPEGDVETWRSFVRNIYIKSQHEGSLSAQTE
                     FMASLINVPDSPLPTDLNNRISGNVDFFFKHEFKAFF"
BASE COUNT         1058 a          683 c          578 g         1224 t
ORIGIN      
        1 tgatcgaact tttcaaacat ttggccaatt cgtaggaatt ccgatttact atgtctatct
       61 agtgatatag atgcctgtgg agggattgaa ttgcccctac caccagatga taattacaca
      121 cggtggagta gcggcaactc caccattacc taataatgcg tgtataaaat gctttataga
      181 aaccctgaac ttggattcgc ttagagtcgc aactatcctg caatggcctc tagggttaat
      241 tcaatgattt tcacgatggg aatgggaggg gaagattcca gttttttacc caatacgcct
      301 aagctaacct ttgacataac accttaatca ctccagcttg ataagcacca agtgctccac
      361 cgccctggag cacaagagcc gtctgtctgt gggaagtatt attgtacctt tttttctctg
      421 gtctactttg acggtcgcag accgacacat gctacagcat agatagcaga agcagtactc
      481 actaaaggag cggacgattt aaagcctgtc acggttgggg gatatttgaa aaaagattat
      541 tgtaaagaaa tcttattaat aatacaaata ttggcaagag aacaagagat taataataat
      601 gtatccatag atcaaaaact aaatcagtat catatttgac cacgtttcaa cagttttctt
      661 actaagatag ggattccatc aatcatattc aaaattgcta attccaattc taatttaatc
      721 gtctcagttc tcttcctttt atttgaatat atggatgaca atgtcttaat cacgtttgtg
      781 ggacaatgtt ctgatggcaa atcttctaca tactcaagat tataatttaa tactcttaat
      841 ccgcatgcta atgcttccaa cgcagtctta ctaagatctt taagtaattt ctgatttaca
      901 aatcttaagt caacgtacac atcatatttc ttcaaaaaat ttgggatgtc tttatagcat
      961 ataggatttt ttgttctgtc atgaatatca atattaagat cgattttctt acgtttgcaa
     1021 tagttcatag caagtttaat gtcagtgact tcactattta cgaataatcc tttatacaca
     1081 ccaacagatc tttctttagc tattttattg ttgaagtgat cagtatcaat aggatttggt
     1141 aggaagattg atcctttgac taattgaatc aaatcaggtg ttgatacaat aactctatct
     1201 gctaatcttt gtgctttgat atgtaagcgt ctcttacgaa tttttctaac tatattttta
     1261 gaccttaaaa tatttcgtag attagatgtt tgtgaattat cctccttaga gaaacccctg
     1321 atatcagtac catgatagtg aagtatgata acctttgatt ttttatatat atttcggata
     1381 ttagttacca tttctggtaa actatgaata tgtattacat ctgctcttct agcctcctcg
     1441 attgatttat aaactaattc ttcggatgtt atgaacactc caaattcttt ataatactca
     1501 tctataccat atttgtcagc attctgaact cttataactt tactttcatt gccattgatc
     1561 cgctgaaact ttgctaaaat gaaagctaca cctgcttgat cccatatgtg caatacatac
     1621 aatcagatta cactatcttt tcttccttaa cccctccata accttttcta aataacttct
     1681 agttccattt tcatttaatt taaagttaaa tcttcacttt ttcagttttt taatattaaa
     1741 ccttcaattt acaaatatca acttctttat gctcccaact tcattttttc atagggttta
     1801 tcctattaca acactaaaat aacttgtgta atgttatttg atatatccat atctgactag
     1861 tttcatatca ttatctatta cttgcccgac tctgtgagca ggcaaatttg cctcctcagt
     1921 tcctggctca agatcatttg tttctatcat ttttattacg ttgtcaaagc tgcccgcagg
     1981 aacttttacc gttcgattca tatttactat ctctgtctta tccagtgcaa catctggagc
     2041 tatttcctgg tagtatcttg aaccaaacaa gatagttcca ggcattatca gaccagctct
     2101 tgtattatct gaatcatgta gccaagagcc ttcatgatca acaagtttac cgtcttctcc
     2161 aaaataatat acactgttag tcttcacata ttgcaaagca atctttggta agttccttta
     2221 agtcacccgt tttgctgtca acagttcttt cttcaacagc tcttgcgact attccctctc
     2281 caacaacctt agtttcattg cttaccgtta cagttacaat aaggggctca ttatcttcaa
     2341 cgcctgcaaa tacaagttga taacctggct gtagaataaa gtatggattg gtacctattg
     2401 tagagaaatt acaatctcca atattgaatg aatttgtcca tgattcattc tgtgcattga
     2461 ccttcatcga aatagtagta aatagtacaa ttattgatat caatatgatg gctgatgcaa
     2521 tgcagattac atcggtttcg aaatttgatc ttgttttcat tgtattggag tatataatac
     2581 tactattaat aaataatttg gtacaatcag ctaagccgga ttagaaaatc atgatatact
     2641 tatcagattt atttagatac ctgtaccata atccttttat accaatcagt acagtcttca
     2701 ccctgtgatg atctttgcgt ttccgcagaa gagttttgtg aggcttctgc ttatcttatc
     2761 tgacgtgaaa aaaacgacta ttcaagaatt ttgagtttaa ctggtgacat attataaata
     2821 atgaataaat attctttctg acaaatatga aagacatgtt aacatttttt tcttcagtag
     2881 aattactggt tgaaaacaaa ctatcatatc atatatcttg attaatatgt atccagttct
     2941 tattttgtag catgccgact cctattatag aaaagatatt gaacgaaggt gctgagattt
     3001 attgtgaacg tagaggtaat ggtccaattc ttttaatgat ccatggtgct atggaagacg
     3061 cggggtatta ttcttctgca gcggaaattc ttgctaataa atttactgct gtgtcatacg
     3121 atagacgatg caattctcgc agctctgggg atcgaagcgt tgacatgacg gttgcccaac
     3181 aggctcgtga tgccgcttcc attatcaaag caatgggaaa tgggaaggct atcgtcgttg
     3241 gaagaagtgg aggagccatc ataggtcttg agcttgcagc aaccatgcca gagataattg
     3301 actttctaat aatttatgag gctccagtga tcgagatgtt gccagaaggt gatgtcgaaa
     3361 catggcgttc ttttgttcga aacatctata taaaaagtca acacgaaggc tcgctttctg
     3421 cgcaaacgga attcatggca tctctgataa acgtccctga ttctccatta cctaccgacc
     3481 tcaacaaccg gatctctggt aatgtagact tcttcttcaa gcatgaattc aaggccttct
     3541 tcg
//
LOCUS       DASPFX010000160         2525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1146533, whole genome shotgun sequence.
ACCESSION   DASPFX010000160 DASPFX010000000
VERSION     DASPFX010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1146533"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /locus_tag="VD694_03445"
     CDS             <1..875
                     /locus_tag="VD694_03445"
                     /inference="COORDINATES: protein motif:HMM:NF044739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="THUMP domain-containing protein"
                     /protein_id="HXW11791.1"
                     /translation="DHSFYDNEDKFRSRFKIRGKENIKTSLLREIRKKFGKISKKKTN
                     LDNPDITINVQIGKKFETNISVISSTVILRGRYIKSKGFRIESKNSTPYDRMEINQRN
                     IEKLLKKVILNKFNSDSITFWPVGKEEPETRVLGNGRPFYVSIKNSKIINFKQSLSIK
                     SNGILFKLIEKVRTMPTSTPLYVKKVLTLVSFQEKLRTNDLRNFTDSGILIVELINRK
                     NKNWKFIYQMDFRLKTPRKLELTMTCDNGLPVRKFVEGEDADISPTLGQIVGRKCSCE
                     KTDILDILNEDLSI"
     gene            complement(909..1094)
                     /locus_tag="VD694_03450"
     CDS             complement(909..1094)
                     /locus_tag="VD694_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27ae"
                     /protein_id="HXW11792.1"
                     /translation="MADKKKDSKLQIYTFYDISGDKVTRKKRDCPRCGKGVFMAEHKD
                     RNTCGKCGFTEFKQKSK"
     gene            complement(1105..1476)
                     /locus_tag="VD694_03455"
     CDS             complement(1105..1476)
                     /locus_tag="VD694_03455"
                     /inference="COORDINATES: protein motif:HMM:NF013450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11793.1"
                     /translation="MSTELVVLRDYDNQLMNRRELQVIFRNVSGNIKKKDAIETISKA
                     NNVDLKTIIPIEIKCNKGSTDVNAFFHIYKDEISAQDTLPKYISMRLIDKVERKKIFD
                     EAKAQKLKEKQQSSEKGKSKK"
BASE COUNT          825 a          401 c          423 g          876 t
ORIGIN      
        1 tagatcacag cttttatgac aatgaagaca aatttaggtc aagatttaag ataagaggaa
       61 aggaaaatat caagacaagt ctactacgag aaattagaaa gaaatttggc aaaatttcaa
      121 aaaagaaaac taatttagat aatcctgaca ttaccattaa cgttcagatt ggtaaaaaat
      181 ttgaaacaaa tatttctgtc atctcaagta cggtaatttt aagaggacgg tacatcaagt
      241 caaagggttt tcgaatcgaa agcaaaaatt ctactccgta tgatagaatg gaaatcaatc
      301 aacgtaatat tgaaaaactc ttgaaaaaag taatattgaa taaattcaat tctgattcca
      361 taaccttttg gccagtggga aaagaggaac cagaaactag ggtacttggg aatggtagac
      421 cgttttatgt gtcaataaag aattcaaaaa taattaattt caaacaaagc ttgtcaataa
      481 agtctaacgg aattttgttt aaattgattg aaaaggtaag aacaatgccg acctccacac
      541 cactttatgt aaaaaaagtt ctgactctag tttcatttca agaaaaactg agaactaatg
      601 acttgaggaa tttcacagat tcaggaatat tgattgtcga gcttatcaac agaaaaaaca
      661 aaaactggaa attcatttat caaatggatt tcagactcaa gactccaaga aaattagaat
      721 taaccatgac atgtgataat ggacttccag ttagaaaatt tgttgaagga gaagatgctg
      781 atatttctcc tactttgggt caaatagtgg gtagaaaatg cagttgtgaa aaaactgata
      841 ttttggatat tttgaacgaa gatttatcaa tctagactat gttaatgaaa acagaaaagt
      901 aactgtagct actttgactt ttgcttaaac tcagtaaaac cacatttgcc acatgtgttt
      961 ctatctttat gctctgccat gaaaactccc tttccgcatc tggggcaatc tctcttcttt
     1021 ctagttactt tgtccccaga aatatcgtag aatgtgtata tttgtaattt cgaatctttc
     1081 tttttatctg ccatgtctat atcactactt ctttgatttg cccttttctg aactttgctg
     1141 cttttctttc aatttttggg cttttgcttc gtcgaatatt ttctttcttt cgaccttatc
     1201 tattaatctc attgatatgt attttggtaa agtatcttgg gcacttatct catctttata
     1261 gatgtgaaaa aaggcattta catccgtact tcccttatta cactttattt ctattggtat
     1321 gattgtcttt aaatctacat tgtttgcttt ggatattgtc tcaattgcat ccttcttttt
     1381 tatatttcct gatacgtttc taaatataac ttgtagctct ctcctattca ttaattggtt
     1441 atcataatca cgtagaacca ccagttctgt gctcatattc gtattaatcg aatgattttt
     1501 ttactcatat aaggatttcc aattaatttt gaacaaatcc gttggatggt gtatttgatg
     1561 gacgaaatac ttttggttgt ttgattatgt aattggaagt gtagagcata aaatgagcac
     1621 aattagtctt taaaatcgaa agtcttgatg tttaatcttg actttcaaat gattaaactc
     1681 caaattatgg atattttcat aacttgggaa ataggaacta acatgatcat gggacaatca
     1741 tgagaattag atttaataat ttagtcaaga caatggcgat ttgtgagact acagctcata
     1801 atgactttat tgtccttgat tttattccta aatttggaga ttgcgtctga tcaagataga
     1861 atgcacaatc ttgattattt cgttagagta acctttgcgc aatcaccgca gagttctatg
     1921 gaattacccc aattcaatgc catcttgcat tctgaatcag gtatatcaaa ggtcaattct
     1981 acgcctttgt ccctgcgact tataatgtag ataaaaatac gattgctttt tctgataggc
     2041 cagatagaat aattttaact caaagtgttg aggattttgt tgggaactgg agtttaacac
     2101 agataagttt tgaaaataat ccaccaaatg ccgtccttgt tctagaagcc gatgagggga
     2161 tgaaacaaga tgtattagaa ataaaattat ttaatcccaa atatgatagc cagatgagag
     2221 tttacactac aactttattc tattgggtaa tgcaagttct tcacggttac ccaaagattt
     2281 caggaatgtt gttttgatca ttgatgattg gtccataaat ggttctctcg attgttcctc
     2341 atatggggga tgtaagtatt tagcattgtt cgacccagat ctgtccaaat gtttcttgat
     2401 tgatcacttt cgtgcagcct gtccactttc ctaattttaa aacattctcg tgtctggcaa
     2461 gtaatatgat ctttacttaa acccaaatga ctatgagtaa aattctaaat ttgattgaat
     2521 gtgac
//
LOCUS       DASPFX010000161         3523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2116995, whole genome shotgun sequence.
ACCESSION   DASPFX010000161 DASPFX010000000
VERSION     DASPFX010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2116995"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..827
                     /locus_tag="VD694_03460"
     CDS             105..827
                     /locus_tag="VD694_03460"
                     /inference="COORDINATES: protein motif:HMM:NF014075.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HXW11794.1"
                     /translation="MKFIEWFPFYQQIRNEFGYSTEKDQKAAEMLSNLIRRKALQVSR
                     LQKKIEGKQVLVIGAGPSLDKNIEFIKKNKKYIKIAADGVVEILLNKKIKPDIVVSDL
                     DGNPKYLRMAEKMGAIMVIHAHGDNMENLERDVPKFGKVIGTTQVMPADNVYNFGGFT
                     DGDRSVFLAEEMKARSITLVGMDFDNLPRKFSSDKHSGIDTDLKRRKLKFAKRLLEML
                     AKQSRSKLASKSTTTIKGIKSL"
     gene            924..1592
                     /locus_tag="VD694_03465"
     CDS             924..1592
                     /locus_tag="VD694_03465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11795.1"
                     /translation="MSGFSEEDIRRAAEVREWLVKEVTTKKEELDKLRDTLLIVDSLL
                     KRTSFISASNLESSASNLKNKSTQQYQSLNEEEETTQQEHRINSVTKSPSDKYRINDN
                     QGVEIRSLKRAKDNLLISNAECTPAYVRLALTDDMNLNINTPPFKTFFLNRILEGMKT
                     KDKEKVQKGELSESEIIDYKVDSDENGKINSVMISNYRERERLNEIFNTATWVFTRML
                     EKGN"
     gene            1600..3132
                     /gene="guaA"
                     /locus_tag="VD694_03470"
     CDS             1600..3132
                     /gene="guaA"
                     /locus_tag="VD694_03470"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HXW11796.1"
                     /translation="MDKIVVLDFGSQYSHLICRRIRESNVYCELLPYNSPISLIKKLH
                     PKGIVLSGGPSSVYLEGSPKPDKKIFEIGVPVLGICYGHQLIVNEFDGKIKRFDNREY
                     GLADLEIDDNSDLFKGINKKIRCWMSHADAAETIPNDFNIIAHTDNSHSAAIANRNRG
                     LYGIQFHPEVSHTEEGNRILRNFSHSISNAKPDWTMEGFVDFSIKDIRNKVQDDRVLC
                     AISGGIDSTTLAVLLNKAISKNLTCVFVNNGLLRLNEESLVPELISKHLGINTITIDA
                     EQRFLSRLVGVSDPERKRKIIGEEFAQVFLDVTKDYGPFQWLAQGTLYPDVIESGFSK
                     GPAAVIKTHHNVGGLPDWLNLKVLEPFRSLYKDEVRKIAVLLDIPNEFIKRHPFPGPG
                     LAVRIIGEVTNDKIRMVRDASNIVESELKISGWYDKVWQAYAAVGDDLAVGVLGDERV
                     YGHIVTIRIVESLDAMTADWSRIPYDLISKISNRITNEVNGVTWVTYSVSSKPPATIE
                     PQ"
     gene            complement(3134..>3523)
                     /locus_tag="VD694_03475"
     CDS             complement(3134..>3523)
                     /locus_tag="VD694_03475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11797.1"
                     /translation="ENECTSLIKACNFDSKLSLDFKDIDNVKQAANLLSSEFELQIDL
                     HTRIGGAWSDGESIQFVKSFDVVPKKLTGSGDCWDAADILGHLSHLDANERLLFSNAY
                     ASLYVSRSDFEPPTIDEAVDFAQKNIQ"
BASE COUNT         1244 a          545 c          733 g         1001 t
ORIGIN      
        1 tacttggtac ttatatatgg aaaaatgtgt gaaacaatag ttttatgaaa taatggaatt
       61 actaaatcaa acaatctatt aagaaccttc ttttatttct aattgtgaaa ttcatagagt
      121 ggttcccttt ctatcagcaa atcaggaatg aatttggata tagcacagaa aaagatcaga
      181 aggcagccga aatgctgagt aatttgataa ggagaaaggc attgcaagtt tccaggctcc
      241 agaagaaaat agaaggaaag caagtacttg taattggagc aggtcccagt ctagacaaaa
      301 atattgagtt tatcaagaag aataagaaat acataaaaat agcagccgat ggtgttgtcg
      361 aaatattact gaataagaaa attaaaccag atatagtggt gtcagatctc gatggaaatc
      421 caaagtacct aaggatggct gaaaaaatgg gagcaataat ggtaattcat gctcatggtg
      481 ataatatgga aaatttggaa agagatgttc ctaaatttgg aaaagtaatt ggtactactc
      541 aagtaatgcc ggccgacaat gtatataatt ttggaggatt tactgacggc gatagaagtg
      601 tctttttggc cgaagaaatg aaggcaagga gcattacttt agtaggtatg gattttgata
      661 acttaccaag aaaattctca agtgataaac actcaggaat agacacagac ctcaagcgaa
      721 gaaagttaaa gttcgcaaaa cgattacttg aaatgttagc caaacaatcc agatctaaat
      781 tggctagcaa gtcaactacg acaataaaag gtatcaaatc tctatgatgt tgtttgactt
      841 gaagttaagt aaataagctg gctatataga cttgaaagca atgtgaaaaa ctattatatg
      901 tttttgatat attgaaacct gtcatgtctg gcttttcaga agaagatatt cgtcgcgcag
      961 cagaagtgcg tgaatggtta gtcaaagaag ttaccactaa aaaagaggaa cttgataaac
     1021 tgcgtgatac cctactaata gttgattctt tgcttaaaag gactagcttc ataagcgcat
     1081 cgaatttgga atcctctgcc tctaatttga agaataagag tacacaacaa taccaatccc
     1141 ttaacgaaga agaagaaact actcaacaag aacacagaat aaattcagtt acaaaatctc
     1201 caagtgataa gtatagaata aacgataacc aaggtgtgga gattagatcc ttaaagcgtg
     1261 caaaagacaa tctactaatt tcaaatgcag aatgtactcc tgcatatgta agattggctt
     1321 tgacagacga tatgaatttg aatattaata ctcctccatt caagactttt ttcttgaatc
     1381 gaatattaga aggtatgaaa accaaagaca aagaaaaagt tcaaaaaggc gaactaagtg
     1441 aatctgaaat cattgattat aaagtagata gtgatgaaaa tgggaagatc aatagtgtca
     1501 tgatttcaaa ttatagagaa agagaacgcc ttaatgagat ttttaataca gcaacatggg
     1561 tattcacaag aatgttagaa aaaggaaatt agcgcgctta tggataaaat tgtagtacta
     1621 gattttggtt cgcaatacag ccatcttatt tgtagacgaa ttcgtgaatc taatgtttat
     1681 tgtgaacttt tgccctataa ttcaccaata agtctgataa aaaagttgca cccaaaagga
     1741 atagtactgt ctggcggtcc ttctagtgtt tacttggaag gttctccaaa accagacaag
     1801 aaaatctttg agattggagt accagtgcta ggaatatgtt atggtcacca gctgattgtt
     1861 aatgaatttg atggaaaaat aaaacgattt gataatcgag agtatggttt ggcggattta
     1921 gaaattgatg ataattcgga cttgtttaag ggaataaata agaaaataag atgttggatg
     1981 agtcatgctg atgcagctga aaccattccg aatgatttta acataatagc gcatacggat
     2041 aattctcatt ctgccgcaat agctaatcga aatagaggac tttatggtat ccagttccat
     2101 ccagaggtat cacatacgga ggagggaaac agaattttga gaaatttttc ccactccatt
     2161 agtaatgcaa aaccagattg gacaatggaa ggttttgttg acttttccat aaaagatatc
     2221 agaaacaaag ttcaggatga cagggtactg tgtgcgataa gtggtggaat cgactcaacg
     2281 actttagctg ttcttctaaa taaggcaata agcaagaatc taacctgtgt ctttgtcaat
     2341 aatggattat tgcggctaaa tgaagaatcg ttggtacctg aattaataag caaacatctt
     2401 ggtattaaca ctattacaat tgacgctgaa caacgattct tatcaagatt agttggagtt
     2461 agtgatcctg aacgaaagcg aaagatcatt ggagaggaat ttgctcaggt atttttagat
     2521 gtaacgaaag attatgggcc gtttcaatgg cttgcccaag gaactctata tccagacgtg
     2581 attgaaagtg gattttcaaa gggaccggct gccgtgatta agacgcatca taatgttgga
     2641 ggtttaccag attggctaaa cttgaaagtc ctagagccct ttagaagttt gtacaaggac
     2701 gaagtaagga aaattgccgt gttgctggat atcccaaatg aattcatcaa aagacatcca
     2761 tttcctggtc caggattagc agtgagaatt attggggaag ttaccaatga caaaattagg
     2821 atggtaagag atgccagcaa tattgttgag agcgaattaa agatatcagg ctggtatgat
     2881 aaggtatggc aagcatacgc tgccgttggg gatgatcttg ctgtaggtgt acttggagat
     2941 gaaagagtat atggccatat agtaactatc aggattgttg aatcattaga cgccatgaca
     3001 gcagactggt cgagaatacc ttatgatttg atctctaaga ttagcaacag gataactaac
     3061 gaggttaatg gagttacttg ggttacttat tcggtatcaa gtaagcctcc cgcgacgata
     3121 gaaccacaat agattattga atgttttttt gagcaaaatc tactgcctca tcgattgttg
     3181 gtggttcaaa atcacttcta ctaacataaa gtgatgcgta tgcatttgaa aacaataatc
     3241 tttcatttgc atctagatgt gatagatgtc ccaaaatatc ggctgcgtcc caacaatctc
     3301 cagatcccgt tagcttctta ggaaccacat caaatgattt gacaaattgg atactctctc
     3361 catcagacca cgctccaccg atccttgtgt gaagatcaat ctgaagttcg aattccgacg
     3421 acaataaatt tgcagcttgt ttgacattgt caatatcttt aaaatctaga gacaatttag
     3481 aatcaaagtt gcatgccttt atgagggaag tgcattcatt ttc
//
LOCUS       DASPFX010000162         4509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1958438, whole genome shotgun sequence.
ACCESSION   DASPFX010000162 DASPFX010000000
VERSION     DASPFX010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4509
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1958438"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(406..921)
                     /locus_tag="VD694_03480"
     CDS             complement(406..921)
                     /locus_tag="VD694_03480"
                     /inference="COORDINATES: protein motif:HMM:NF021425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2127 domain-containing protein"
                     /protein_id="HXW11798.1"
                     /translation="MQAERKRPTGVTIIAILMIIVGILTLIGGIALVIVGPLISQYSV
                     SNPSSTFEDNIYSNFNSTDTSGTSTFLSIFSGFLSIIGIGLIALAIVNFIVAWGLLKG
                     KGWAWSISVIVTIISLVIGIIFVVFNGVAGDISSIIGQIVGVVINGIILWYLYRPNVK
                     SYFGKVKIQAP"
     gene            complement(1428..1811)
                     /locus_tag="VD694_03485"
     CDS             complement(1428..1811)
                     /locus_tag="VD694_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HXW11799.1"
                     /translation="METKRQGVNQLPMYDGCSFEGYNASILLKETAKIRCLITKRGTM
                     EMLIPLCCSTKPLRYKEFRKLMKGISSKTLALRLKELETAKILERHAYNEIPPRVEYR
                     LTLKGQELVESIITLMQWMKKWSRV"
     gene            1878..2648
                     /locus_tag="VD694_03490"
     CDS             1878..2648
                     /locus_tag="VD694_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HXW11800.1"
                     /translation="MKQEILKANIKKRYGKIALEGNSEGCCGPDCCNSTDPRTSSIAI
                     GYDGKALESIPKSAILGLGCGAPINYAELKEGETVIDLGSGSGIDVFLASRHVKDNGK
                     VIGIDFTDEMLHKATLAAKDNGFTNVEFRKGDIENSIPIVDDTVDVAISNCVINLASD
                     KVKAFKEVYRVLKKEGKGRMIISDLVTSKEVEGKSISVEDWCSCIDGALTKENYIHSI
                     ERAGFQNVRTLSEQVYLNEEKANGRKITSLVIGAETGQ"
     gene            2645..3067
                     /locus_tag="VD694_03495"
     CDS             2645..3067
                     /locus_tag="VD694_03495"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HXW11801.1"
                     /translation="MKFFKHKPKKLVLFVCVQNAGRSQMAEGFFKKYAPKENEVISAG
                     TEPVSEINPLVVKVMREVGIDIRNQKSKEITEDMIRSSSKIVNLGCMDKESCPTLFLQ
                     NLLDWNIEDPKDKPIEKVREIRDEIEQRVKELVADIKN"
     gene            3045..3731
                     /locus_tag="VD694_03500"
     CDS             3045..3731
                     /locus_tag="VD694_03500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HXW11802.1"
                     /translation="MSQILKINKLTLTQKKFLAEIIGTFIVVFCATGSVVFDAKIGGI
                     LGLPFIAFAPFIGVAVSVYLFGKVSMAHFNPAVTIGYLITNHLPKNLLTVYVGAELIG
                     ALLASIFMKFVIGTEANLGTNTPNSIISLPMIFGIEILASALLMAVIYVVVLTKGLKG
                     FSGIAIGGIVGLDIYFFGLISGASMNPARSLAPAVLSGSIGDLWLYWSAPFIGTILVA
                     MICRRKFSNK"
     gene            3858..4217
                     /locus_tag="VD694_03505"
     CDS             3858..4217
                     /locus_tag="VD694_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HXW11803.1"
                     /translation="MAEIIKKNLNSAPDETRKFEKGKVDVATFGDVIIGRAEFEPGWS
                     WEKCVKPISKTNSCEAPHTQYVISGRMKVVMDDGTEEEFGPGDVGVVPPGHNAWVVGD
                     EKCVAIDFTGMTKYAKQ"
BASE COUNT         1502 a          721 c          826 g         1460 t
ORIGIN      
        1 aagcagcatc atgaccttgt aaaaaaaaga tcaaatatgt taataataat aggtttaagg
       61 caacaattac agtcgataac ctttgattcg ttgaagagct tatcaataat atattcatta
      121 attaattaac gcagtgaata atagttttta aatgttaggc aaattccaat ttttgttacc
      181 atgtttttac ctttaaacgg agacatttta actgaggaac aaattgtaat taatattcgc
      241 ctaaaaaaac tgaattgtca caatacttca atataacacc aataaatgac tttttaactg
      301 tgattccatt gcgataaact aacatattat tgtaaattga gacgccaaca gttgaattct
      361 cccaattgta ttctagttta attctaatgc ggtaaagcca aagccttatg gtgcttggat
      421 tttcactttg ccaaaatatg atttgacatt aggtctgtac aagtaccaga gaattattcc
      481 atttatgact acacccacta tttgtccaat tatgctagaa atatctcctg ccacaccatt
      541 gaatacaaca aaaataatac cgataactaa tgaaattata gtgacaatta ctgaaatgga
      601 ccaagcccat cctttaccct ttaagagacc ccatgcaact atgaaattaa caattgcaag
      661 tgctattagg ccaataccta ttatagataa aaatccacta aatattgata gaaaagtact
      721 tgtacccgaa gtatcggtac tattgaaatt tgaatatata ttgtcctcaa aggtactgga
      781 tggattgctt acactatact gacttattag aggaccgaca atcaccaagg cgataccacc
      841 aatcaaagtc agaataccaa cgattatcat aagtatcgct attatcgtaa cacctgtagg
      901 tctttttcgt tctgcttgca aatcaatcga tgaataatta tagtagaata aatgtgttta
      961 tgtagttgat acctttggca tgttttgtat tcttatttcg atgttagcaa ttattccttt
     1021 tcttttgaat cccgcaaaac ggttgcatca ttcttgtatt ctagaaattg gaagcaaatt
     1081 atgaagtaga agaacgttcc cgatattcta aggtagtaat ctcgagttaa ttgagttctt
     1141 tagcgcatac aaacaagaag tgttaatcaa tctcttcact ttcattttgt tttactttta
     1201 ttcactatat taggagtgaa tccaattaga gaactactgc agtcatgggc tggcttgttg
     1261 tgaactaaat ttgacataaa atatagaccc ttaatactct tcttttcata catgattcat
     1321 atcgaatcaa tataataaaa atggctggag gtccacaaca tgcgacctct tccatttatg
     1381 aaccgagctc gtattattct gaatgatgat ttttttagga taaaagatta tacccgtgac
     1441 cactttttca tccattgcat taatgtaatt atagattcta ctaattcttg tcctttcaaa
     1501 gtaagcctat attctaccct aggaggtatc tcgttgtagg catgcctctc gagtattttt
     1561 gctgtttcta attctttcaa cctgagcgca agtgtcttgc tactaattcc tttcattaat
     1621 tttctaaatt ccttgtatct taatggcttt gtagaacaac aaagtggtat caacatttcc
     1681 attgttcctc tctttgtaat taaacaacgt atttttgctg tttctttcag taatattgat
     1741 gcattgtatc cctcaaaact acatccatca tacatgggaa gttggtttac tccttgtctt
     1801 ttagtttcca agatgtcacc tagtatacta tagtctactt gactacttaa atagtttcca
     1861 tagtaaacaa tagtagtatg aaacaagaaa tattgaaagc aaatattaaa aaacgttacg
     1921 ggaaaattgc tttagaaggc aattcagagg gttgttgcgg tcctgattgc tgtaactcta
     1981 ccgatcccag aacgtcatct attgctatag gttatgatgg caaggcttta gaatccatac
     2041 caaaatcagc tatattgggg ctaggctgtg gagctccaat taattatgct gaattgaaag
     2101 aaggagaaac tgtgatagac ttaggctcag gttctggaat agatgtattc ttggcatcca
     2161 gacatgttaa ggataacggt aaagtaattg gtatagattt tactgatgaa atgctacaca
     2221 aagcaacttt ggctgccaaa gataatggct ttaccaatgt tgagtttcgg aaaggagata
     2281 ttgaaaatag tatcccaatt gtggatgata ccgtagatgt cgcaataagt aattgtgtta
     2341 tcaacttggc ttctgataaa gtaaaagcat tcaaagaagt ttatcgagtc ttgaaaaaag
     2401 aaggtaaagg aagaatgata atttcagatt tggttacaag taaagaagtt gagggaaaat
     2461 cgattagtgt tgaagattgg tgtagttgca tcgatggagc attaaccaaa gaaaactaca
     2521 ttcatagtat cgaaagggca ggatttcaaa atgtaagaac tttgagtgaa caagtatacc
     2581 taaatgaaga aaaggcaaac ggaagaaaaa ttacaagtct agttattgga gcagaaacag
     2641 gtcaatgaaa ttctttaaac acaagccaaa gaaattggtc ttatttgtct gtgtacaaaa
     2701 cgcgggaaga agccaaatgg ctgaaggatt cttcaaaaag tatgctccaa aagaaaatga
     2761 agtaataagc gctggtacag agccagtttc agagattaat ccacttgtag ttaaggtcat
     2821 gagggaggtc ggcatagata tccgtaatca aaaatcaaag gaaattacag aagatatgat
     2881 ccgcagttca tcgaaaatag taaacttggg ttgtatggat aaagaatcat gtccaacact
     2941 ttttttgcag aatctgttag attggaatat agaagatcct aaagataaac ccattgaaaa
     3001 agtgagggag attagagatg agattgaaca gagagtaaag gaacttgtcg cagatattaa
     3061 aaattaataa attaacactt actcaaaaaa aatttcttgc tgaaatcata ggtactttta
     3121 tagtagtttt ctgtgctacg ggttctgttg tttttgatgc aaaaattggt ggaatattgg
     3181 gacttccttt tatagcgttc gctcctttta taggtgttgc agtcagtgtt tacctttttg
     3241 gaaaagtatc aatggctcat tttaatcctg ctgttacaat tggttattta attacaaatc
     3301 atttgccaaa aaatttactg acagtctatg ttggtgctga attaattggt gcattacttg
     3361 caagcatctt catgaaattt gtgatcggaa cagaagccaa tttaggaaca aatactccaa
     3421 atagtatcat ctcattgcct atgatatttg ggatagagat tctggcatct gctctattaa
     3481 tggctgtcat ctatgtagtt gtccttacaa aaggattgaa gggttttagt ggtattgcta
     3541 ttggtggaat agttggattg gatatttact tctttggact tatttctggt gcttcaatga
     3601 atcctgctcg ctctttggct ccggcggttt tgtcgggttc tatcggtgat ttgtggcttt
     3661 actggtctgc tccattcatt ggaacaattt tggttgctat gatatgtagg cgaaaattta
     3721 gtaacaaata atttcaaaca ggatgggtcg tatgcatatt gtttacaatg tgaatccact
     3781 taaatttcaa accaatcatt gagaataacc accacaaatg cttaataatt ctaaagtctt
     3841 cttagatttg agactctatg gcagaaatta ttaaaaaaaa tcttaacagt gcacctgatg
     3901 aaacaagaaa atttgaaaaa ggcaaagtag atgttgcgac ttttggtgac gtcattattg
     3961 gaagggccga atttgaacct ggctggagtt gggagaaatg cgtaaagccg atatcaaaaa
     4021 caaatagttg tgaagcacca cacacccaat atgtcatctc tggaagaatg aaagttgtca
     4081 tggatgatgg aacagaagag gaatttggtc ctggtgatgt tggagttgtt ccgccgggtc
     4141 acaacgcctg ggtcgttggc gatgaaaaat gcgtggctat tgattttaca ggcatgacaa
     4201 agtatgcaaa gcaataatag accttcaaaa cctctttttt tttcactaaa ttctatatta
     4261 gtaattcgaa aaagatggta gttggcaaat agtatcaaaa gtgtatttat gaggaaataa
     4321 ttatgcgaaa gttaaaagta ctaattcatt atgatattac ccttcatatc ctacagtttt
     4381 cacattatta ttctcatcgt atattattct ggatcaaaat gaacctgtat tgggtcaaaa
     4441 tcaaatcata agggaaccca ttaataatac caagatttta actatccttc attatcagat
     4501 cacaatctc
//
LOCUS       DASPFX010000163         2836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_712480, whole genome shotgun sequence.
ACCESSION   DASPFX010000163 DASPFX010000000
VERSION     DASPFX010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_712480"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1092
                     /locus_tag="VD694_03510"
     CDS             <1..1092
                     /locus_tag="VD694_03510"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HXW11804.1"
                     /translation="RPDSSTSDETVSFSDDNGLTWSDPVVAISGTDDVNFIDKPWMTT
                     FYNFPEKKNSEENDRVYVVATIFVGELPEPEEPFPGTCQVVFSKSIDGGKTFPDASSP
                     LILAESQECTPDLGHAYIAGGPDDSILACWYNSPVQFGNDPFDIRCRTSTDGGETFGE
                     EIVPVDDRLDVPFWKCPDISYHKITGATIPSIEITPDGVAHMVYTADPTPGDSDGECG
                     DVYYAKSQFPWNEWTPTEEHKRVNDDSTETFQGFPTITSKKLGNENILVVAWEDDRHS
                     EEIGEPNLIYDMYSATIDENSNISPNKRVSDISSTSDFTFIADYFDVSVHRSVGEKSA
                     YVIWTDRRDKSDIFDPEDDVAMDKIKLSK"
     gene            1650..2219
                     /locus_tag="VD694_03515"
     CDS             1650..2219
                     /locus_tag="VD694_03515"
                     /EC_number="1.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016646 - oxidoreductase activity, acting
                     on the CH-NH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HXW11805.1"
                     /translation="MHLQWNDRRTRQFITNVGLITSDGPYGPDVMAAEWTHHISYSPS
                     LIAVNIRGQDATAHNIIESKEFGINLAGEEQNVVSSICGRYSGRHVDKVAVLKGMDVK
                     FYNGNKIKIPMVSGCAMNAECKLQRYEEIGDHIMFVGEVLEITADENIKPLIYHNGKY
                     WMLSENIEKPSADVLTKIENLVEQFKKIT"
     gene            complement(2294..2617)
                     /locus_tag="VD694_03520"
     CDS             complement(2294..2617)
                     /locus_tag="VD694_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11806.1"
                     /translation="MKARCGHVAEKSYADAHGGLCRKCHSNFSFLLELEQKYGEDALV
                     EYWYAKILTYPSETKEEVVCFINHLIEFYQQKLTEVPSKKNYIKKMLYMLRSIQEPFD
                     IQTLR"
BASE COUNT          975 a          474 c          550 g          837 t
ORIGIN      
        1 agaccagaca gcagtactag tgatgagaca gtttcatttt ctgatgataa cggtctgacg
       61 tggagtgatc ccgtagttgc aatttctggc actgatgacg tcaatttcat agacaaaccg
      121 tggatgacta ctttctataa ctttccggag aaaaagaatt ctgaagaaaa cgacagggtt
      181 tacgtcgttg ctaccatatt tgttggtgaa ctgccagaac ccgaagaacc atttcctgga
      241 acttgtcaag ttgtcttctc aaaatcaata gacggcggta agaccttccc tgatgcatca
      301 tcccccctta ttctcgcaga atcccaagaa tgcactcctg atctgggaca tgcatacata
      361 gcaggagggc cagatgattc catacttgca tgttggtata actctccagt tcaatttggc
      421 aatgatccat ttgatatccg atgcagaact tcaactgatg gaggagaaac ctttggtgaa
      481 gaaatagttc cagttgacga tagacttgat gtgccatttt ggaagtgtcc cgatatctct
      541 tatcacaaaa ttaccggtgc tacaattcca tcgattgaaa taacgcctga tggcgtagcc
      601 catatggtat atactgccga tcccacacca ggagattcgg atggtgagtg tggtgacgtg
      661 tactatgcaa aaagccaatt tccatggaat gagtggactc caactgagga acataagcgg
      721 gtaaacgatg attctactga aacttttcag ggatttccta caatcacttc aaagaaactt
      781 ggtaacgaaa atatcttggt tgtcgcttgg gaagatgacc gacattctga agaaataggc
      841 gaacccaatt tgatatatga tatgtattca gcaactattg atgagaatag caacatctca
      901 cctaacaaga gagtgtcaga tatatcttcc accagtgact ttacctttat tgcagattac
      961 ttcgatgtat cggttcatag atcggttggc gaaaaaagcg cttatgtgat ttggactgat
     1021 agaagagaca agtctgacat atttgatcct gaagatgacg tagccatgga taaaataaaa
     1081 ttatccaaat aagcgtgttt tgatggcaat aatgacaagt taactgacat cacaggagtt
     1141 gataacatac atggatcata cagccaaata cagttaatta gttgagcata tgctccaata
     1201 aagattattc tagtacagca tatactagac ttaagtaaaa tatgtaaatt gagtcaaatg
     1261 caacttgagt tagaacaaca gttatactgt atgttttcaa gctcaataag atcagatgat
     1321 gagacaagaa aaacatacac tctacttttg aaaaaattta ttgaatatat aggggaaggt
     1381 gacatattac taggaagtga cactaaacga atagaacgaa gcttaataga ctttattatt
     1441 ataactttga ataatcaagg aaagcaaata gcttttgtct tttaattgtt ctatatagat
     1501 agaaactaga aatttctaat tttgactaat ctgaaaaatc agatccgccc cgacggccca
     1561 agatatttgg gcgtgactat tttgatttta tggttttaaa ataatgtagt gtaccttatt
     1621 gataaatact aattgaacac aaggtatgca tgcatttaca atggaatgac agacgtacga
     1681 gacaatttat tacaaatgtg ggattgatca caagcgatgg tccttacggt ccagatgtga
     1741 tggcagcaga atggactcac catatttctt attctccgag tctcattgca gttaacattc
     1801 gagggcaaga tgcaactgca cataatatta tcgagtcaaa ggaatttgga atcaatttgg
     1861 cgggtgaaga acaaaacgta gtgtctagta tatgcggccg ttattctggt cgacatgtag
     1921 ataaagtggc tgtcttgaaa ggaatggatg tcaagtttta caatggtaac aaaataaaga
     1981 taccaatggt gagtggctgt gcaatgaatg ctgaatgtaa acttcaaaga tatgaagaaa
     2041 ttggagacca catcatgttt gttggagaag tgcttgaaat aactgcagat gagaacataa
     2101 aaccactaat ttatcataat ggtaaatact ggatgttaag tgaaaacatt gagaaaccgt
     2161 cagctgatgt tttgaccaaa atagaaaatt tagtagagca gttcaaaaaa ataacataaa
     2221 ttacaatcat tttgggctga aaattatgtc aaaaataatc caaaattatc acattattct
     2281 gtaccaaata taattatctt aaagtttgta tatcaaatgg ttcttgtata gaacgcaaca
     2341 tgtacaacat ttttttgata taatttttct ttgaaggaac ttccgtcaat ttctgttgat
     2401 agaactctat caaatgattt atgaagcaga ctacttcttc cttagtttct gatggatagg
     2461 taagtatctt ggcataccaa tattcaacta atgcatcttc accatatttt tgttccaatt
     2521 ctagaagaaa tgaaaaattg gaatgacatt ttctgcataa tccaccgtga gcatccgcat
     2581 atgatttttc tgccacatga ccgcaccttg ctttcataat tattactatt agtaacgata
     2641 gtaaatataa atcataatta agcctaaact cgatatgcat caaagagcaa aatggggctt
     2701 gttgtgcata aaataataaa agattaattc aataaacaaa ccacttatta gtgatgaatt
     2761 gtatataata ccagaaaagt catgtcgaat gcaggatata atatagacga gggtagcaaa
     2821 gactatttgg aaggtg
//
LOCUS       DASPFX010000164         6827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1658670, whole genome shotgun sequence.
ACCESSION   DASPFX010000164 DASPFX010000000
VERSION     DASPFX010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6827
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1658670"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..784)
                     /locus_tag="VD694_03525"
     CDS             complement(197..784)
                     /locus_tag="VD694_03525"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HXW11807.1"
                     /translation="MTDDHGPTQTKFPIIDGQIVKLRELLIGDANDISSLMTYNVSKS
                     LWEVPYPYTLDNALNFIDSSHKEFRSFKTVNFAILYKKNPEPNGLVGIIGLKNINIDE
                     RKANLGYWIGESFWGNGIASESVKLVINYAFSVLRLEEVYAYVYSQNKPSMRVLEKNG
                     MTKVGEVNEYSKKLDTYQNTIKFLIKDTKQVFVRE"
     gene            complement(1006..1974)
                     /locus_tag="VD694_03530"
     CDS             complement(1006..1974)
                     /locus_tag="VD694_03530"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11808.1"
                     /translation="MLQLKRSKNNPILVPNQNNWWEKEAVFNCAVLYDGKVIHMLYRA
                     IGEYKNYVSRVGYATSSDGFKFTRNQEPVLYPKLDYERFGIEDPRLITVDNKTYITYV
                     VLSDYVKNNPQVSTALAKTEDFSHFERLGIVTLPDSQDKDVVLFPRTVAESKFQRYML
                     LHRPSAWVGPAYNTEKPSIWIAEGDSVTNYNNHSLLVKPQETWETLKIGAGVPPIKTE
                     KGWLVIYHGVNEGHVYSAGAILLDLKKPSKILGRTRTPILSPKEQYELKGDVNNVVFP
                     TGACIVDNMLLVYYGAADKVCCLATIELGEILDYLLSDVCSIPTEK"
     gene            2647..3366
                     /locus_tag="VD694_03535"
     CDS             2647..3366
                     /locus_tag="VD694_03535"
                     /inference="COORDINATES: protein motif:HMM:NF018595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043231 - intracellular membrane-bounded
                     organelle [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HXW11809.1"
                     /translation="MKSNNNEESHLNPRVVPLSNGPYYLINDPNPKVVYNLQDFKGEP
                     LSTVVGIALCRCGKSKNKPFCDGTHSVVGFSSVKKVQDSENENTKKIGIKDKRRDYIG
                     KEIIIHDNRKICSHAAECVKNLPSVFRLDSKPWINSDGSNVKVIIDTIRRCPSGALSY
                     SINGVEYRDPEEQRNPTITVLKNGPYHITGRIELIGENIQFGEGASKEHYTLCRCGAS
                     ENKPFCDGEHRKINFNDEQND"
     gene            3630..4820
                     /locus_tag="VD694_03540"
     CDS             3630..4820
                     /locus_tag="VD694_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HXW11810.1"
                     /translation="MVIEIGPILQDFTIIMIAASIMAMVSYKLKQPMVIGYIIAGMII
                     GPFTPPFSLISNFDVLNLFAEIGVILLLFVVGMEFPIEKLRMIGKKALVIAFSEGLGT
                     FAIGFLVCQAVNYSLADSLFLALAISVTSTVIVMRILDELGMIKDDASIIILGVAVIE
                     DIIIISMLAILQSVSSTGGLYGIELVISIVTVLAFIGGALFIGSKTVPRFVNLIGKTN
                     QHDVLVVAILGVAFGLSFLAFEIGISVATGAFFAGVLIAESKVHSVTRVLTSPLKDMF
                     GAIFFVSIGALMDITKIPALILPALMLIVVSIGAKFLTVYFSARSQGYDTQTSLKTAF
                     GLSSSGGELALVVAKGGADVGTTSSFVLPMVGTMTIITTFITPYLIKLGWKLVDIKKY
                     KWKD"
     gene            complement(4868..5254)
                     /locus_tag="VD694_03545"
     CDS             complement(4868..5254)
                     /locus_tag="VD694_03545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11811.1"
                     /translation="MNNNPHRSDEDQNSDPNEPPDENSVVNKCETIEDGTEAFMQWMG
                     SSDKKSLKSDNPIVLVKFINDVHTVLYDTTLEKEVEVKLSSGIPFCTYCKLDDCAHVG
                     FTICIEQLGRHRRDGKEETIEEIVDS"
     gene            5460..5762
                     /locus_tag="VD694_03550"
     CDS             5460..5762
                     /locus_tag="VD694_03550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11812.1"
                     /translation="MKVRVYFCREPDVQSELLSHDKLNKQALDTIYDLVWETEFKNIL
                     NVGRIWLKFANEQNPFGIEIRKKRSHNKIAAGDIIQVASNYYMVHDVGTKKIQVMD"
     gene            complement(5820..6557)
                     /locus_tag="VD694_03555"
     CDS             complement(5820..6557)
                     /locus_tag="VD694_03555"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HXW11813.1"
                     /translation="MCDGNGHGYLTGDQDNNAEPLLYIGTSSAVTGSYHYSPSFVLSG
                     SNYQDVTSSSSLQLSQFSVAAWFKTSSNFVSDAFIVNKGGVGSDSSGQNLNYGIWMTS
                     TEKVKAGFETSTGADRYVTSLNSYNDGKWHYAVVTYGGSNVVLYVDGVQVGTKSTLGA
                     SPETSGTKPVRMGANSRVTPPGNFFTGEVDEVRVWNDDLTIQQVTDAFAGTSFNTAEQ
                     VLFLGFSSTALSGGYNYDPSLSLSGPS"
     gene            complement(6467..6682)
                     /locus_tag="VD694_03560"
                     /pseudo
     CDS             complement(6467..6682)
                     /locus_tag="VD694_03560"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
BASE COUNT         2126 a         1228 c         1285 g         2188 t
ORIGIN      
        1 actgggcgtt tcgtttccaa atctaatatt tagagatctg tgcgggatat atacattttg
       61 agtatctggg aaccaacata gtatgaattt tgaattaaga aatttaggat aaaagatctc
      121 atcagaaggt aaagtaagac tattgagtaa tcattgaatt atttatgatt atttatattg
      181 aaagattgga atatacctac tctctcacaa atacttgctt ggtgtctttt atgagaaatt
      241 ttatagtatt ttgatatgtg tcaagcttct tgctatattc gttcacctca cctactttgg
      301 tcatgccatt cttctctaaa actcgcattg aaggtttatt ttgagaatac acatatgcat
      361 agacctcttc taatctaaga acagagaacg cataattgat aaccagtttc actgattctg
      421 atgctatacc attaccccaa aaagattctc caatccaata tcccaaatta gccttcctct
      481 catcaatgtt tatatttttt aggccgataa ttcctactaa accattgggt tcaggattct
      541 ttttgtatag tatcgcaaaa tttacagtct taaatgatct aaattcttta tgacttgaat
      601 cgataaagtt cagtgcatta tccaatgtat atggatatgg aacttcccat aacgattttg
      661 atacgttata tgtcatcaag ctacttatat cattggcgtc accaatcaaa agttctctca
      721 atttgactat ttggccgtca attatgggaa attttgtttg ggttggccca tgatcatctg
      781 tcattgtata gataagaatg aagttaacta caatatagtt gtaaatattg tagaaactaa
      841 tgtctcgttc agttctcttt atcagaactg aaattcgtta aaggcgctta tcaaatgacg
      901 atgatcagta tgagctcttc aaaggatctt tgtgcttacc tattaccaaa aatatgggta
      961 ccaagacgaa accccaagac taatctaact atcattgtat cggatttatt tttcggttgg
     1021 tatcgagcat acatcagata ataaataatc aagtatttcg cccagctcaa tcgtggcgag
     1081 acagcatacc ttatctgcag caccatagta cacaagtaac atattgtcca cgatacacgc
     1141 ccctgttggg aaaactacgt tgttgacatc accctttaat tcgtactgtt cttttggaga
     1201 tagtatagga gttctagttc tgcccagtat tttacttggt ttcttaagat caagtaagat
     1261 tgcaccagca ctgtaaacgt gcccttcatt cacgccatgg taaatgacaa gccaaccttt
     1321 ctccgtttta attggtggaa caccagctcc tatcttcaag gtctcccaag tttcttgtgg
     1381 tttaactaaa agagaatggt tattatagtt agtaactgaa tcaccctctg caatccatat
     1441 acttggtttt tctgtattat aggctggtcc tacccaggca cttggcctgt gtagaagcat
     1501 atatcgttga aatttacttt ctgctacagt tcttgggaaa agtacaacgt ccttgtcttg
     1561 tgaatcgggt agtgttacta tacccagtct ctcaaaatgt gaaaaatctt cagtctttgc
     1621 aagggcagta gatacctggg gattattttt cacataatca gaaagcacaa cgtatgttat
     1681 gtaggtttta ttgtcaacag ttatcaagcg gggatcctca ataccgaatc tttcataatc
     1741 taatttggga tacaatactg gttcctgatt cctagtgaat ttgaatccat cactgcttgt
     1801 tgcatagcct actctagata cataattttt gtattcgccg attgctctat ataacatatg
     1861 gataacctta ccatcgtaga gaactgcaca gttaaataca gcctcctttt cccaccaatt
     1921 gttttgattt ggaactaaaa ttggattatt ttttgatctc tttaattgaa gcattattct
     1981 cttaaatcat tattagcaag tttaccttct ctataaatat tatcctatct aatgaaattt
     2041 aaaataacat gtcaataaga attagtagta ttagacctaa taatacttgc attagtatca
     2101 attcccattg actctgccgt aataaagtat cgaactataa agttgccata ctttgcagac
     2161 aatttagtca cttactcgtg tgtagttatt ttaagagcac tacaaacatg aacacccggc
     2221 agataattga ttggaattca aatttctttt ctagaatatt gaagaaatta tgcgcggcag
     2281 ctcacaagtg ttatatatca tcgtgcccat aacagtacga tgtaaagtga gcaaaaaagt
     2341 tgctgattca tgtgatcaca tgaataaagt taaccaaaac atcaatggaa atacgaaagg
     2401 ctgcgaagaa tgtgaaaaaa tcggatctga gtgggtacac ctgcgtcttt gcttgacatg
     2461 cggacatgta ggatgttgtg attcttccgt aaataaacat ggcacaaaac attttgaatc
     2521 ttctggtcat ccgatcatta gatcgtatga acccggtgaa aattggaaat ggtgttatct
     2581 tgatcaactt ttcattaggt agtaatttta agactattag cactcagtta agggcgattc
     2641 aattcattga aatctaacaa taacgaggaa tctcatttga atccaagggt tgttcctcta
     2701 tcaaatggcc catattattt gataaacgat ccaaatccaa aggtagtcta caatcttcaa
     2761 gatttcaaag gagaacctct gtcgactgta gttggtattg cgttatgtcg atgcggcaag
     2821 tctaaaaaca agcctttttg tgatggtaca cacagtgtag ttggattttc tagtgtaaaa
     2881 aaggttcaag atagtgaaaa tgaaaataca aaaaaaattg gtattaaaga caaaaggcgg
     2941 gactacattg gaaaagagat tataatacat gacaacagaa aaatttgttc gcatgcagcg
     3001 gaatgtgtca agaaccttcc ttctgtattc aggttagact cgaaaccttg gattaattct
     3061 gatggttcaa acgtaaaggt cataatcgat acaataagaa gatgtccatc aggtgcattg
     3121 agttactcca taaatggcgt tgaatacagg gatccggagg agcaaagaaa tccaactatt
     3181 acagtcttga aaaatggacc ttaccatatc actggacgaa ttgaattaat tggcgaaaac
     3241 attcaattcg gggaaggggc ttcaaaagaa cattatactc tatgtcgttg tggtgcgtca
     3301 gaaaataaac cattttgtga tggagagcac aggaagataa attttaatga cgaacaaaat
     3361 gactgacaat atttgcaatg cccatagatc cattccaata gacactaata ctaaataaga
     3421 gtaacttttt attaattgag ctagatatcc aattgtccgg atcttgaaaa ataagcgaaa
     3481 tgaaagttta cggatattat tagtacgtct ttagtctctt gcaaagtaat cgatcaaaat
     3541 actccatgat cacagatcca ataatcttcc aaaaaaattt taagatattt ataatcaaaa
     3601 atataatgca tgtgggtaga tgatatgaga tggtgattga aattggtcct attttacagg
     3661 attttactat tatcatgata gctgcctcca tcatggcaat ggtttcttac aaactcaagc
     3721 aacccatggt aataggatat ataattgcag ggatgattat cggaccattt actccaccgt
     3781 ttagtcttat aagcaatttt gatgttctca atttgtttgc agaaattgga gtaatcctat
     3841 tattgtttgt cgtagggatg gaattcccaa tagaaaaatt aagaatgata ggaaagaagg
     3901 cgttagttat agcgtttagc gagggcttgg gtacatttgc aattgggttt ttagtgtgtc
     3961 aagccgtgaa ttactcctta gcggatagtc tatttttggc gttggccata tcagtaacta
     4021 gtactgtaat tgtcatgcga atcttagatg aacttggtat gatcaaggat gatgcgtcaa
     4081 taatcattct tggtgtagca gtgattgagg acatcataat catttccatg ttagcgattt
     4141 tacaatctgt ttcttcaacc ggagggcttt atgggattga attagttata tctatcgtaa
     4201 ccgttcttgc atttattgga ggtgctttat tcataggatc aaagacagta ccaagattcg
     4261 taaatctaat tggtaaaact aatcaacatg atgtactagt tgttgccatc cttggagtag
     4321 cctttggtct ttccttcttg gcgtttgaaa tcggaatatc agttgcgact ggagctttct
     4381 ttgctggagt gctgattgca gaatcaaagg ttcactccgt tacgcgggtc ctgacatctc
     4441 cgctcaaaga catgtttggc gctatctttt tcgtttctat tggtgcccta atggacatta
     4501 ctaaaatacc tgctctcata ctgccggctt taatgctaat agttgtatca attggagcaa
     4561 aattcctaac agtatacttt tcagctagat ctcaaggcta cgacactcaa acttcactaa
     4621 agactgcttt tggactttcc tcatcgggag gagaactggc acttgtggta gccaaaggtg
     4681 gtgccgatgt gggaactact agttcctttg tgttaccaat ggtaggaacc atgacgataa
     4741 ttacgacgtt tatcacacca tatctgataa agttaggttg gaaacttgta gatattaaaa
     4801 agtacaaatg gaaagactga agagaaaaag taaagagact tttggatctc aatatctgga
     4861 attattctta actgtctaca atctcttcta tggtttcttc cttaccatca cgtctatgtc
     4921 ttcctagttg ttcaatacag atagtaaaac caacatgtgc gcaatcatct aacttgcagt
     4981 atgtacagaa tggtatacca gatgataact tgacttcgac ttccttttct aaagtcgtgt
     5041 cgtagaggac ggtatgtaca tcattgataa atttaaccaa aacaattgga ttatctgatt
     5101 tgagagattt cttatcagac gaacccatcc attgcatgaa tgcttctgtc ccgtcttcta
     5161 ttgtttcaca tttgtttact acactgtttt catcaggtgg ttcatttgga tcagaatttt
     5221 gatcttcatc tgacctgtga ggattgttat tcaaatcaat tgccttttct tattaacgga
     5281 tactatcaga gcagtaccac atcatatttt aagatattgt ctttgtgccg ataattcagg
     5341 aacgaacgta gaaatataag gttttcaatt catgcgttga ctacaatatt tgttaaattt
     5401 tccaggcaaa gtaagccggt gaggttattt ggctggaaag actacatgat gcagagaaga
     5461 tgaaagtaag agtctatttc tgtagggaac cagatgttca atcagaatta ttgagtcatg
     5521 ataaattgaa taaacaagcg cttgatacga tatatgactt ggtttgggaa acggaattca
     5581 agaacattct taatgtagga aggatctggc taaaattcgc taatgagcaa aatccatttg
     5641 gaatagaaat taggaaaaag agaagtcata acaagattgc agctggagat atcatacaag
     5701 tagccagcaa ttactatatg gttcatgatg ttggcaccaa gaaaatacaa gtaatggact
     5761 aattgagcct tagtgaggcg tctttgcagt gaaccatgaa aattgaactt ttagttttct
     5821 cagctaggtc cagacagtga taagctggga tcatagttat acccacctga cagggcagta
     5881 gatgaaaatc ccaaaaatag tacttgttct gcagtgttga atgaagtacc cgcaaaggca
     5941 tcagtgactt gttgaatagt tagatcatca ttccagactc taacttcatc tacttctcca
     6001 gtaaagaagt ttcctggtgg agtaacccta gaattagctc ccatccttac tggttttgtt
     6061 ccagaagttt caggtgaagc gccaagtgta gattttgtac caacctgtac tccatctaca
     6121 tataatacga cattagaacc gccatatgtt actacagcat agtgccattt tccatcatta
     6181 tatgagttga gagaagtgac gtaccgatca gctccagtac ttgtttcaaa tccagccttt
     6241 accttctcag tgcttgtcat ccatattcca tagtttaaat tctgtcctga actatcactg
     6301 cctactccac ccttgtttac aataaatgca tcagatacaa aattggaaga tgtcttaaac
     6361 caagctgcta cactaaattg agataattgc aatgaagagg aacttgttac atcttgataa
     6421 ttagaacccg aaagtacaaa actcggactg tagtgatagg atcctgttac ggctgaggat
     6481 gtaccaatgt aaagtaatgg ttctgcgttg ttatcttgat ctccagtaag gtagccatgc
     6541 ccattcccat cgcatattgt tgcaggtgat gatcctgaat ttctatgagg gcgtttctga
     6601 tatcggaagg tgttgcatta ggattctcag tactatacaa agcagctgcg cccgtgacat
     6661 gaggagttga tgcactcgta ccactaaatg agttggttta agaactacct cttgcggttg
     6721 attttatgag aacgccaggt gctgcaatgt ctgcaacaga tccaaaatta ctaaaatcta
     6781 ccaaagcgtc atcatttcca gccgtagttg aagaggaaag acctcca
//
LOCUS       DASPFX010000165         2498 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1291807, whole genome shotgun sequence.
ACCESSION   DASPFX010000165 DASPFX010000000
VERSION     DASPFX010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1291807"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            478..1368
                     /locus_tag="VD694_03565"
     CDS             478..1368
                     /locus_tag="VD694_03565"
                     /inference="COORDINATES: protein motif:HMM:NF013697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HXW11814.1"
                     /translation="MVKELLNDAVNKVRSNHSDLSINLKYVELHDLPPAATKDQMLTA
                     IANGTHIDIISLDQIWLGEFAEKGFLTDLTNYTEKWGKISEWYQSNLDGGVYNDGIYG
                     IWYETDVRGTWYWKDLLNQANVDPNMLKTWDGYIEAAKKLNTVLRPQGIEGVHLTGAS
                     HSPDVWYPYLWMLGGSIVESRPGHPTKGSYWYPSYNSSEGVKALEFIKDQVDAGVKPQ
                     KIPVGIGEMDREFANRKFAVMIEGSWMPGAWSNLTRQQVYNIGFIPMFPVPNNKTSTS
                     TLMGGWQFNIPVTSSHKDIA"
     gene            1410..1682
                     /locus_tag="VD694_03570"
     CDS             1410..1682
                     /locus_tag="VD694_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11815.1"
                     /translation="MAGPTRISSNTDNVRRRRRTYANIIRSSIPFYDEMVSMISEGRS
                     RPSIPEYQTIADHVRQALDEVYYGIKVPKQALDDAAAKSAKALGWL"
     gene            1719..2108
                     /locus_tag="VD694_03575"
     CDS             1719..2108
                     /locus_tag="VD694_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11816.1"
                     /translation="MANQSSKRRIMVVDNEKDITITLKIGLEDGGFNVDTFNDPSLAL
                     KSFKPDFYDLVLIDIVMPDIDGFDLYERLKKMDPDIKACFLTASEMYHEEFRKAEHCS
                     LNKDLFLQKPIPIDDLVMKINRKINST"
BASE COUNT          801 a          452 c          528 g          717 t
ORIGIN      
        1 catgtcttcc tatttatgtc ctctgtcaca acctgtaatc actgtaaaac caaccacgca
       61 gaaatattcc aagggagtgg ggagttctgt cttagctgct ggcaggagaa aacacttcct
      121 gatatctaac ctaaccagct attagaaccg ctaggactaa cgtttgactc aaagaaaaca
      181 atacttgact taaatggttg tagcattgaa gcttattctt agcacgatcc catacaaatt
      241 ctacagtgag acttgtaagc gaaaaatctt taaaatcggt tgctgttgta ttagaatagt
      301 aagaaaaaat atctcattga tgattgtaat ctttatcatt atcagtgtga cgacagttac
      361 cgctgcccta gtgcagtcgg agcagttcaa aacatcctct tatgatgttc ttgcatctcc
      421 acaacaaaag gagaatgtaa ctatcacagt ccttgtcaac gactgggtga agaagacatg
      481 gtgaaggagc tattaaacga tgctgttaac aaagtaagat ccaatcattc tgacctttcg
      541 attaacctga agtatgttga actccacgat ctaccacctg ccgctacgaa agatcagatg
      601 ttaacggcta tagctaatgg cacacatatt gatattatat ctttagatca aatatggctt
      661 ggagagttcg ctgaaaaagg atttctaaca gaccttacaa attatactga aaagtgggga
      721 aagatctctg agtggtatca atcaaactta gatggtgggg tctataatga cggaatatat
      781 ggtatttggt atgagactga cgtaagggga acatggtatt ggaaggattt gttaaatcag
      841 gctaatgtgg accctaacat gctaaagact tgggacggat atattgaggc cgcaaagaag
      901 cttaatacag ttttaagacc tcagggaata gaaggagttc acctcaccgg agctagccat
      961 tcccctgacg tatggtatcc atatctttgg atgctgggag gttcgatagt tgaaagtaga
     1021 ccaggacatc caactaaggg ctcttactgg tatcctagtt ataatagcag tgagggagtc
     1081 aaggcgctag aatttattaa agaccaagta gacgctggtg ttaaaccgca gaaaattccc
     1141 gtaggaattg gggaaatgga tcgtgaattc gctaatagga aatttgcagt aatgattgaa
     1201 ggatcttgga tgcctggtgc atggtccaac ttaactagac aacaagttta taatattgga
     1261 ttcattccaa tgttccccgt gcctaataat aaaacttcga cctctacatt gatgggcgga
     1321 tggcaattta atattccagt cacttcttca cataaggata tagcatagga agtaattgta
     1381 aatatgttaa aaccagaagt actgtcccct tggctggccc aacaaggatt tcttccaaca
     1441 cagataacgt taggagaagg cgcaggacct atgccaatat tattagaagt tctataccat
     1501 tttatgatga aatggtttca atgatttctg aagggcgaag tagacctagc attccagaat
     1561 atcaaaccat tgccgatcat gtgagacagg cattagatga ggtttactac ggaataaaag
     1621 taccaaaaca agcgctagat gatgcagccg caaagtcagc aaaggcttta ggatggttat
     1681 gatgtcgaag tttcaacttt gataatgatg aagaagcatt ggctaaccaa agttctaaaa
     1741 ggagaatcat ggtagtcgat aatgagaaag atattactat aaccctaaaa ataggactag
     1801 aagacggcgg ctttaatgtt gatacattca atgatccatc attggctttg aagagtttta
     1861 agcccgactt ttatgatctt gttttgatag atattgtaat gccagatata gatggctttg
     1921 acttatatga acggttaaag aaaatggatc ctgatatcaa agcgtgtttt cttacggcaa
     1981 gtgaaatgta tcacgaagag ttcaggaaag cagagcattg ttctttaaat aaggatctgt
     2041 tcctccaaaa accaatacca atcgacgatc ttgtaatgaa aataaacagg aagataaact
     2101 caacataaaa gcaatagaat gggagagaat agtaatagaa tcttgtcata aaactttttt
     2161 gtatttcggg ctttgtataa ttccttaggc attcgccagg cggtctggga ccttagtctt
     2221 agcctgtatg tcatccatcc tggctgagtc ttccttgctg cgactttggt tattatctca
     2281 cctcgtcatt gccaaaccgt ggatgttagc gaatctagta ctctaactct taatatcata
     2341 tctgtttttt aatatagaaa atggctgctg aggccttcgg tgcaatagac atccttaaag
     2401 taattgcgat aactgcgttt gccggcggta cttcatttct cggtgtttat atcgcaaaac
     2461 acgtaagatt tgcagaacaa catatactta cgcttact
//
LOCUS       DASPFX010000166         2729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1435790, whole genome shotgun sequence.
ACCESSION   DASPFX010000166 DASPFX010000000
VERSION     DASPFX010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1435790"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VD694_03580"
     CDS             complement(<1..636)
                     /locus_tag="VD694_03580"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HXW11817.1"
                     /translation="MIIVENSSIKNYLLLIRLPNLFTLPSNILLGFILVSTFTLTITS
                     IIQILMLVTISTLLYCVGLVLNDLFDYEIDRKERPNRPIASGKISRKIAIIIVTVFIS
                     IALTLSLLVSVTTFSISALLLVIIFGYDRYAKNTNAGPFTIAAARVTNVILGASANIN
                     SVDNFPQNILLVFVLTITFVYVSLIGFLSRYEVQGFSANIRTYLIPVTISGI"
     gene            complement(706..1539)
                     /locus_tag="VD694_03585"
     CDS             complement(706..1539)
                     /locus_tag="VD694_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HXW11818.1"
                     /translation="MEFAFSTNAFKKYSLVETINVLSEIGYTGIEILCDIPHAYPKTQ
                     SDSDISEIRQLISRLDVRLSNLNAFTFFAIGNTYHPSWIESDPSYRKLRVDHTIDCIK
                     LARKLGAKNISTEPGGPIMNNELSQDQSLKLFEDGINQVLNTAEKENVTILIEPEPDL
                     LIENSDQFIHFIKNFDSESVGLNLDIGHFFCVGEDPSKVIHKLSEYIRHVHLEDISAD
                     RRHNHLILGEGAIDISSALKSLKDIGYDGFITVELYPYQDCPAYAANQSMKFIKSLDY
                     L"
     gene            complement(1549..2358)
                     /locus_tag="VD694_03590"
     CDS             complement(1549..2358)
                     /locus_tag="VD694_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HXW11819.1"
                     /translation="MGRFFDPHIHTYSRTTDDYQSMSNAGIEVIVQPSFWLGSPRTSV
                     GTFEDYWEHMISFETQRSKEFGIDHYVCISVNPKESTARPLAPNALEAMSKYIDRERV
                     VAIGEIGYNLINDREDELFQMQLDIATDKKMLTMIHLPHVNKKEGIQRTESILKNKSL
                     LDMTNKILIDHNTEETIEKTLELGCWAGLTVYPVTKLSPSRAIDIIEKNGLDKIMINS
                     SADWGVSDPLSVPLVAEEMKKRGFSMSDIQKVTFYNAYEFYKQSAKFQWRP"
BASE COUNT          840 a          485 c          490 g          914 t
ORIGIN      
        1 aattccggag atagtgacag gtatcaagta tgttctgata tttgcagaaa aaccttgaac
       61 ctcataccga ctcaagaatc ctattagtga cacataaaca aatgttattg tcaggacaaa
      121 cactaataga atattctgag gaaaattgtc gacactgtta atgtttgcac ttgctcccaa
      181 aattacattt gtaactcgag cagcggctat agtaaaagga cctgcgttag tgttctttgc
      241 atatctatca taaccgaaaa taattactaa taagagcgca gatatgctga atgtagtaac
      301 actaactagt aaggacaacg tcagtgcaat ggaaataaat acggtaacaa taataatggc
      361 tatttttctt gatattttac ctgatgcaat aggtctgttt ggtctttcct tcctatcaat
      421 ctcataatca aagagatcgt taagaacaag gcctacacaa tagagaagtg ttgaaatagt
      481 taccaacatg agaatttgaa taatcgacgt tatcgtaagg gtgaaagtag agacaagaat
      541 aaatcctaag agaatatttg atggaagagt gaatagattg ggaagtctga ttagcagaag
      601 atagtttttg atactagagt tttccacaat aatcatctgc agtagactga tggaattctc
      661 atataaaata ttgataattg taatattggg gatatcattt cctgactaaa gatagtcaag
      721 tgatttaata aacttcattg attgattcgc ggcataagcc ggacaatctt gatatgggta
      781 caattccact gtaataaatc catcatatcc tatatcttta agcgatttga gtgccgaact
      841 aatatcaatc gcaccttcac ccaaaatgag atgattgtgt cgtctatctg ctgaaatatc
      901 ttctaaatga acatggcgga tatattccga taatttgtgt attacctttg atggatcttc
      961 tccaacacag aaaaaatggc ctatgtctag attcaatcca acagattctg agtcaaaatt
     1021 cttgataaag tgaataaatt gatcagagtt ttcaattaat agatctggtt caggttcaat
     1081 aagtatagta acgttttcct tttctgcagt atttaatacc tgattgattc catcttcaaa
     1141 taatttcaat gattgatctt ggctcaactc attgttcatg atcggtcctc ccggttcagt
     1201 agatatgttc ttggcgccaa gttttctagc caattttatg caatctatgg tatgatctac
     1261 tcgcaactta cgatagctag gatcactttc aatccatgat ggatggtatg tgttgcctat
     1321 tgcaaaaaag gtgaatgcat ttagattgga aagacgaacg tctaatctcg atattaattg
     1381 tctgatttca ctaatgtcag aatcactttg tgttttggga tacgcgtgag gtatatcaca
     1441 aagaatttca atacccgtgt agcctatctc agacaagaca ttaattgttt ctaccaggga
     1501 atatttcttg aaagcatttg tgctaaatgc aaactccata tctctaagct agggtctcca
     1561 ctgaaacttg gctgattgct tgtaaaattc atatgcatta tagaacgtta ctttttggat
     1621 atcactcata ctgaagcctc tttttttcat ttcttctgct accagtggca cgcttaacgg
     1681 atcagaaact ccccagtcag ccgagctgtt gatcatgatt ttatctagcc catttttttc
     1741 aattatgtca atggctcttg aaggagaaag ctttgttaca ggatagacag ttaatcctgc
     1801 ccaacatcca agctctaaag ttttttctat tgtttcttct gtattgtgat caatcaaaat
     1861 tttgtttgtc atgtctaata gactcttgtt tttaagaata gattcagttc gttgtattcc
     1921 ttctttctta ttaacatgtg ggaggtgtat catcgtaagc attttcttgt ctgttgcaat
     1981 gtccagttgc atttgaaata attcgtcctc ccgatcatta attaaattgt atcctatttc
     2041 ccctatggcc acaactcgtt ctctgtctat gtattttgac attgcttcaa gcgcgttcgg
     2101 tgctagaggt ctggcggttg attcttttgg attcactgat atgcacacgt aatgatcgat
     2161 accaaattct ttggatcttt gagtttcaaa agatatcatg tgttcccaat agtcttcaaa
     2221 agtacctaca gatgtccttg gactccctaa ccagaaagaa ggttgaacaa ttacctctat
     2281 ccctgcattt gacattgact gataatcatc ggtggtacga gagtacgtgt gtatatgtgg
     2341 atcaaaaaaa cgtcccaaaa ttattcaccc ttattgaaac acatcctttt ttatatttgt
     2401 cttgtgtatt ttgatacctt ttctgctgca atagttcaat ccaatacatt acatggaatc
     2461 taccagactt gttgataatt tgaccaattt gccttctttc ttgattttat tgaagttcag
     2521 agtgagtcag tccctctact tacagtacta gggtggataa attcttgaaa gttggaataa
     2581 ttgatatgaa ttttgaacaa atattggaaa aagagcttga agactctagg ttatggctaa
     2641 gtagagaacg ggaggaatct acctacaaac gagatctcgc caagaagatc gaactaattt
     2701 catgggtaat caaaaatatg aagaatcca
//
LOCUS       DASPFX010000167         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1830868, whole genome shotgun sequence.
ACCESSION   DASPFX010000167 DASPFX010000000
VERSION     DASPFX010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1830868"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..876)
                     /locus_tag="VD694_03595"
     CDS             complement(<1..876)
                     /locus_tag="VD694_03595"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11820.1"
                     /translation="MTIKDKRHQEFTNKIREIMKTVGNDILVEGIMPSLEIPKVGYDN
                     TVWSDEKRMLTIGEKTVQIGPNSSKKIPTFAQYLVMANAIRKLLDEEMESTIRGMYYA
                     TLSTVGDEKNQQKFWSGQDDSDDAIKAIELLTNVPREEFSVTSKPKGMISGPITLSVG
                     GDLIDCNLGSRATSQLIPTNIRDLEIVKVKADFVMVVEKDTVLNNIRKSGFIQKYNAI
                     LLTGSGEPDRATRMMVKMLNEKWKKPVVIFADADPWGLGIALRYKIGSESLSYDSDRL
                     VTPNAKVLGMMFSDIY"
     gene            complement(890..>2116)
                     /locus_tag="VD694_03600"
     CDS             complement(890..>2116)
                     /locus_tag="VD694_03600"
                     /inference="COORDINATES: protein motif:HMM:NF020800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11821.1"
                     /translation="AIIVFETDEGKVTFKRRTETMPSPSKEVLPHPSDMDLKTLKKAI
                     LNFMNQKTTLQGILSSSFQKMSNEKAKDIINRAGLAAKPADQYDEHELIKVVNICKHT
                     KFQSPNTDHLSPIGEKILTVGMTSEYSITQNKVTTNSGSQTHLTAKILKPALTAYSSR
                     ICVVNNRPTIVECGIAYGGDIPSFKLYRFANKIPLLYDEGSDVAREVISEVGINKMGI
                     SKKEVKEQFSSVETKSDRTVEYLPIHIFFHICSTKIPYKTAGKESIASEGDLKKYMKS
                     CLSDLYRKVSAQIRRELKIKEDENKLRLYKHYIPFIVNAISESIKIDTKKLTNAFQIL
                     AEKYVGGELSNITKQIIPKSDQKRIEPVNKKINTTNRRGNENSLSKFDTRSNVSKQSN
                     KISSPKINISRKNTKK"
BASE COUNT          542 a          426 c          338 g          810 t
ORIGIN      
        1 ataaatatca gaaaacatca ttcctagtac ctttgcattt ggtgttacca atctgtcgct
       61 gtcataactt aaggattcac ttcctatttt gtaacgtagt gcgattccca acccccatgg
      121 atcagcatca gcgaaaataa caactggctt tttccacttt tcgtttaaca tctttaccat
      181 catcctggtt gctctatcgg gttcacctga tcctgttagc aagatcgcgt tatatttttg
      241 aataaatcct gattttctta tattgtttag cactgtgtct ttttcgacta ccatgacaaa
      301 atctgctttt actttcacaa tttcaagatc tcgaatattc gtgggtatta gttgtgacgt
      361 agccctgctc cccaaattgc aatcaatcaa gtctccacca acactcagtg ttattggccc
      421 cgaaatcatt ccttttggct tggatgttac tgaaaactct tcacgtggaa catttgtcaa
      481 aagttcaatt gcttttattg catcatcaga atcatcctga ccgctccaaa atttttgttg
      541 atttttttca tcgccaacag tgctcagagt ggcataatac atgcctctaa tggtactttc
      601 catttcttca tccagcaatt ttcttattgc attagccatg actagatatt gcgcaaaagt
      661 cggtatcttc ttcgagctgt taggaccaat ttgcacagtc ttttcaccaa tagtaagcat
      721 tctcttctca tccgaccaaa cagtattatc atatcccacc ttcggaattt caagacttgg
      781 cataataccc tcaacaagta tatcatttcc aacagttttc attatttctc tgatcttgtt
      841 agtaaattct tgatgtctct tatctttaat tgtcattttt tcctacacct cattttttcg
      901 tattcttacg agaaatatta attttgggag agctaatttt gttactttgt tttgacacat
      961 tagatcgagt atcaaattta ctcaggctat tttcattacc acgtctgttg gttgtattga
     1021 tctttttatt gactggttct attctttttt gatctgattt cggaatgatt tgtttagtaa
     1081 tatttgataa ttccccacca acatacttct ctgccaagat ttgaaatgca ttggttagtt
     1141 ttttcgtatc aatcttgatt gattctgata ttgcattcac tatgaatggg atatagtgtt
     1201 tgtaaagcct caatttattt tcgtcttcct ttatctttag ctctcttcta atctgagcac
     1261 tgactttcct gtaaagatca gatagacatg atttcatgta ttttttaaga tcgccttctg
     1321 atgcaatgct ttcctttcct gcagtcttat acggtatttt agtagaacat atatgaaaga
     1381 aaatgtgaat tggaagatac tctacggttc tgtcggattt tgtttctaca cttgagaatt
     1441 gttctttaac ttcttttttg gatatcccca ttttatttat acctacttca gaaatcactt
     1501 cacgtgcaac gtcagaacct tcatcgtata gaagtgggat cttattggcg aatctataga
     1561 gtttgaacga agggatatcc cctccataag caattccaca ttctacaatc gtcggtctat
     1621 tattcacaac gcaaattctt gaagaatatg cggtcaatgc aggctttaat attttcgctg
     1681 ttaaatgtgt ctgacttccc gaattggttg tgaccttatt ttgagtaatc gaatattctg
     1741 aagtcatccc gacagttaga attttttcgc ctatgggact caaatgatct gtatttggag
     1801 actgaaattt cgtatgtttg cagatattta caaccttaat caactcgtgt tcgtcatatt
     1861 ggtctgcagg ttttgctgcc aatcctgccc tgtttatgat atctttggcc ttttcatttg
     1921 acattttttg gaatgagctt gaaagtatac cctgaagagt tgttttttga ttcatgaaat
     1981 taagtatggc cttctttaga gttttaagat ccatatcaga gggatgaggt agtacttcct
     2041 ttgaaggact tggcattgtc tctgttcttc tcttaaacgt taccttacct tcatctgttt
     2101 caaaaacaat gatcgc
//
LOCUS       DASPFX010000168         2761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_946640, whole genome shotgun sequence.
ACCESSION   DASPFX010000168 DASPFX010000000
VERSION     DASPFX010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946640"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(558..878)
                     /locus_tag="VD694_03605"
     CDS             complement(558..878)
                     /locus_tag="VD694_03605"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HXW11822.1"
                     /translation="MDTKNKNDLKNYRNKHILLLYDDQKYADWIIGRYFHNGFAKGES
                     CIFYAADRPEIIEKQLSAEGIDVSLFKQKKLLRIYEIAKSNDNNKDDMIHTLNQMREE
                     SKRN"
     gene            1005..1232
                     /locus_tag="VD694_03610"
     CDS             1005..1232
                     /locus_tag="VD694_03610"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HXW11823.1"
                     /translation="MGFGVLFSCFLAHQDIKQVYHAQDYSEAVITDTSRAGDGIARIQ
                     GLVIFVKGAMAWGDKSIKIKITGDGAEVVSD"
     gene            complement(1675..2739)
                     /locus_tag="VD694_03615"
     CDS             complement(1675..2739)
                     /locus_tag="VD694_03615"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HXW11824.1"
                     /translation="MTNALLTVPAVGEGPFPGELFFGPAGAGSVLSPTTPYTSMAEYL
                     SERGFAVLRYDKPGVGLNSTIIDSNAWGNLTFDNMKQNAEKALSVLLQQPEVNATKKA
                     TLIGHSEGTNFPPRVAVDNPDKVRNIILMAPVAGNWRTDIIYFQEVAKPLLYAENILD
                     KGHLGQISVKEASKDPIFRTLVGGNLTQLLLNPTNVTDNNHTATLPEQNNTNDDLISI
                     EGVLKPALVRIYENETSFNASRLSEKCVNIYGCPSIGKSFSALSSVNSMIGNVTSNTG
                     ILILIGENDSQTPLNQALLMQQRLTEVDHPDHQIIVYPDLGHTFVPSNQWISSYGQIP
                     EYVFQDMFEWLTSPARDVNE"
BASE COUNT          818 a          501 c          494 g          948 t
ORIGIN      
        1 aaaatatgtc gtaaataggt catttgaaaa ataaattcaa tctgcatagt ttaagagatc
       61 tctatcagga ttaatataaa tttcacttac ttttttttag atgtttaaag taccggtttg
      121 ctaaatcatt tgcagtacct agatcaacag ccaatacgat gataatagcc aaaactttaa
      181 tgaccttgat ttactaaata gacacattta ttgactttca tcgtgaccag aattacaaag
      241 gtaccaatac atttgggtgg aataagaaaa atattttctg ctgtagccag tagtgttact
      301 gttgtctgcc cgctgactat gcgatcacta ctcataaaca ttattattat catcttcttt
      361 cctattatcg tctttctcaa gtgacatagt ttcaaacgct actgctttat ttggttctgc
      421 tgcataaata acatagtgat gattttttaa aagtgaacta atccattctt cttttcttgt
      481 gggctctatt ttagagatat cgtaataaca tatttgggaa taatttaatt catcaaaatg
      541 ctggtgccca gtttcttcta gtttcttttg gattcttctc gcatctgatt aagagtatga
      601 atcatatcat ccttattatt atcatttgat tttgctattt cataaatccg taaaagtttt
      661 ttctgtttga ataagcttac gtcaattccc tcagcggata gctgtttttc gattatttca
      721 ggtctgtcag ccgcgtagaa aatacatgat tctccttttg caaacccgtt gtgaaaatat
      781 ctacctatta tccagtctgc atacttttga tcgtcgtaca aaagtagaat gtgtttgttg
      841 cgataatttt ttaaatcgtt cttgttttta gtatccatgt tttctctaaa ctcctctcat
      901 ttcaacaggc ggtatatcta aatattttat acccatttca aggacaaaat tagatattct
      961 atcatagtcc tgtagaaagt ctctaccttt tttggttatc attagtgggt tttggagtat
     1021 tattttcttg ctttctagct catcaagata tcaagcaagt ttatcatgcg caagattaca
     1081 gcgaagctgt gataactgat accagtagag ctggagatgg tattgcaaga atacaaggtt
     1141 tggtgatttt tgtaaaaggt gcaatggcat ggggggacaa gagcataaag attaagatta
     1201 ctggcgatgg cgcagaagtt gtatcagatt agattaaatc aatcagtctg tccaaactta
     1261 ctctgatctc aaacattaaa tttggaatct gctaacagat ccctgcctca taacaacatt
     1321 attactctta tagaactcta tctccattcc tcttgttaca ttatatttta ttcaaaatga
     1381 ttcgtcagtt gagatagaca tcagttcggt atcgtgtgaa ttgcaacaat gacaatcaag
     1441 atatatgatg aagagctaga cagagactct aaattgtcaa tgtcaaaatt agacgcacac
     1501 caataacatg aattgcaaat cacaaaatag attttattgg tagtctaatt aacatgagag
     1561 tattagttaa agcaatgatt cctacggttc aaagggggtc cgaagtaata ttacctttct
     1621 gactagattc tcttaaatag taaaggatta ttatcttaag tttttactgt gtacttattc
     1681 attgacatct cttgccggag aagtaagcca ttcaaacata tcctgaaata catattctgg
     1741 tatttgacca tacgagctta tccattgatt ggaagggaca aatgtatgtc caagatctgg
     1801 atagacaata atttgatggt caggatgatc tacttctgtt aatctttgtt gcattagtaa
     1861 cgcttgatta agaggggttt ggctatcatt ttctcctatg agtatgagga taccagtatt
     1921 agaagtcacg ttccctatca tgctattgac actacttagg gcagaaaaag attttccaat
     1981 actagggcaa ccatagatgt ttacgcattt ctctgacagc cgtgacgcat taaaagatgt
     2041 ttcattttcg tatattctta caagtgcagg cttaagcaca ccttcaatac taatcaagtc
     2101 atcattcgtg ttgttctgtt caggcaatgt agcggtgtga ttattatcag taacgttagt
     2161 cgggttaaga agaagttgag ttaggttccc accaaccaaa gtccgaaaga taggatcttt
     2221 tgatgcttcc ttcactgata tctgtccaag atgaccttta tctaatatgt tctcagcata
     2281 aagaagaggc ttagcaactt cctggaaata tattatatca gtcctccaat ttccggccac
     2341 tggagccatt agaattatat ttctgacttt atctgggtta tcgactgcaa ctcttggagg
     2401 gaagttagta ccttcactat gtccaatcaa tgttgccttt ttagttgcgt tcacttcagg
     2461 ttgctgtaac agtaccgata aagccttctc agcgttttgc ttcatattgt caaatgtaag
     2521 gttgccccat gcattactat ctattattgt ggaattgagt ccaacacccg gcttgtcata
     2581 tctaagaacg gcaaatcctc tttctgaaag atactcagcc atagaagtgt atggtgttgt
     2641 cggtgaaagt actgatccag cgccggcggg cccaaaaaag agttcgccag ggaatggccc
     2701 ctcacccaca gcgggaacag ttagtagagc gttagtcaat tgttagattt ctatgcttca
     2761 c
//
LOCUS       DASPFX010000169         3182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1585786, whole genome shotgun sequence.
ACCESSION   DASPFX010000169 DASPFX010000000
VERSION     DASPFX010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1585786"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1010)
                     /gene="cofH"
                     /locus_tag="VD694_03620"
     CDS             complement(<1..1010)
                     /gene="cofH"
                     /locus_tag="VD694_03620"
                     /EC_number="2.5.1.147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(D-ribitylamino)uracil--L-tyrosine
                     4-hydroxyphenyl transferase CofH"
                     /protein_id="HXW11825.1"
                     /translation="MILESMLRNIDPVVSDTLNQALDSKNISIKQAVELFLTKGTEMI
                     MTTMVADILRKNKVGDKVTFVINRNINFTNVCIKRCGFCAYSRDFRNEEGYFLPITEV
                     VRRAAEAWNLGATEICIQAGLPPKMDGLLYVDICRAIKKELPDIHIHAFSPEEIMYGC
                     ARSGLSVKEYLTLLKEAGLGSLPGTAAEILDQDLRDLISPGRITVDDWINVITTAHKL
                     KIPTTSTIMYGHVETMEHKAKHLELLRSIQKETGGFTEFVPLSFVHREAPMYNHNLVK
                     GISPGPTAQDVIKMHAVSRIMLNNFINNIQVSWVKEGAKMSQLLLEAGVNDFGGTLIN
                     ES"
     gene            complement(1007..2185)
                     /gene="cofG"
                     /locus_tag="VD694_03625"
     CDS             complement(1007..2185)
                     /gene="cofG"
                     /locus_tag="VD694_03625"
                     /EC_number="4.3.1.32"
                     /inference="COORDINATES: protein motif:HMM:NF004884.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7,8-didemethyl-8-hydroxy-5-deazariboflavin
                     synthase CofG"
                     /protein_id="HXW11826.1"
                     /translation="MDGIDLSTTKDIVQNIHNFPIGKDEVLELVEKYDTKSICTLAKT
                     VRDDCKNEIITYSRKVFINLINLCRDTCSYCTYKKELLDSDLSMLTKEQVLHIATLGK
                     RLKCTEALIVTGERPEQKYPEYREWLRKNDCSTTIEYVDQVSNLILEETGLLPHTNAG
                     TLNYDELSLLRKTNVSLGCMLETSSERLGGKNLPHEFAPSKNPRARTRVLENAGKLRI
                     PVTTGLLIGIGETLDEIIDSLILIREINQRYANIQEVIMQNHVPKYNTKMRNFIPPTH
                     ELFLLTVSLARIIMPYMNIQVPPNLSPNYYSTYINAGINDWGGISPLTIDFVNPESPW
                     PDIKDVKQATQKAGYDFRGRLAIYPEFLLDKREFVPNALWDYISPLSDSSGLAKEELS
                     "
     gene            complement(2355..>3182)
                     /locus_tag="VD694_03630"
     CDS             complement(2355..>3182)
                     /locus_tag="VD694_03630"
                     /inference="COORDINATES: protein motif:HMM:NF024896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HXW11827.1"
                     /translation="CFQGYKKSTGKILLFTDADTVHKPDALSSAINTMMHDRLDALTL
                     VPKLLCQDLITKFTLPVLSVFLHSRYSPLRVNNPNNKIGYFFGSFYIISKINYEKIGT
                     HEQVRQELVEDGALGRIVKEQRMKLRLVRGENYVEALWARDPRSLWHALRRIIIPLHA
                     EKKKSALMVTAFIFFILTEPFLTLPVSLLYLSDNPVKRPLEIICSLIIVIMLICAILQ
                     SRFGLLQKSIYGLGFVLGCTVITASFVVSAFSLKGNRMVRWRDRSYLVGTKQHPFHL"
BASE COUNT          919 a          635 c          539 g         1089 t
ORIGIN      
        1 atactttcat ttatcaatgt tccgccaaaa tcatttactc ctgcttcaag aagtagttgc
       61 gacattttcg caccttcctt gacccaggat acctgaatat tgttaataaa attgttgagc
      121 attattctag aaaccgcgtg catctttatt acgtcctgag cagtagggcc cggagaaatt
      181 ccttttacta gattgtgatt atacattgga gcttctctgt gaacaaaact gagtggaaca
      241 aattcagtaa atcctcccgt ctctttctga atagatctta gcaattctaa atgtttggct
      301 ttatgttcca ttgtttctac atgaccatac attatagttg atgtagtagg aatctttagt
      361 ttatgtgctg ttgtaatgac attaatccaa tcatccactg tgattctccc cggagagatc
      421 aagtctctta gatcctgatc caatatctct gctgctgttc caggtaaact tcccaatcct
      481 gcctccttta atagagtcaa atattcctta acagatagtc ccgatctagc acatccgtac
      541 atgatttctt ccggagaaaa agcatgaata tgaatatctg gcaattcctt ttttatcgct
      601 ctgcaaatat cgacgtacaa taaaccatcc atttttggcg gtagccctgc ctggatacaa
      661 atttcagttg cgcctaaatt ccacgcctct gccgctcttc ttacgacctc tgttatcgga
      721 agaaaataac cttcttcatt tctaaaatct ctgctgtaag cgcaaaaacc acatcttttg
      781 atacaaacat ttgtaaaatt gatattcctg ttgataacaa aagtgacttt atcgccgact
      841 ttgtttttcc tgagtatgtc tgcaaccatt gtagtcatga tcatttcggt accttttgtt
      901 agaaacaatt caacagcttg tttgattgaa atgttcttag aatcgagggc ctgattcaaa
      961 gtatcagaga caacgggatc tatgtttctt aacatcgatt caagtatcaa ctcaattcct
     1021 ccttggcaag acccgaacta tcagacaatg gagagatata atcccaaaga gcatttggaa
     1081 cgaattctct tttgtctaaa agaaactctg gataaattgc aagtcttcct ctaaagtcat
     1141 atcctgcttt ttgagttgcc tgttttacat ctttaatatc gggccatgga gactctggat
     1201 ttacaaaatc aattgtcaac ggagatatgc caccccaatc attaattcct gcattaatgt
     1261 atgtcgaata ataattagga ctaaggtttg gtggaacctg aatgttcata taaggcataa
     1321 taattcttgc aagtgagaca gttagtaaaa ataactcatg agttggagga ataaagttcc
     1381 tcattttagt attatatttt ggtacatgat tttgcattat tacttcctgg atattagcat
     1441 acctttgatt aatttcccta ataagtatca atgagtcaat aatttcgtct agagtttccc
     1501 caattccaat gagtaatcct gtagtcacag gaattcttaa ttttcctgca ttttcaagta
     1561 ctcgagttct tgctctggga ttcttactag gtgcaaattc atgtggtaga ttcttacctc
     1621 cgagtcgttc actagatgtc tccaacatac atcctaggct aacattagtt ttccttaata
     1681 gtgacaattc atcatagttc aaggtaccag catttgtatg tggtaacaat ccagtttctt
     1741 ccaagattag gttactgacc tggtctacat attcgatagt agttgagcaa tcattttttc
     1801 ttaaccattc tctgtattcg gggtattttt gctcaggtct ttcccctgtc acaatcaaag
     1861 cttcggtaca ttttagtcgt ttgcctagag ttgcgatgtg tagaacttgt tcttttgtga
     1921 gcattgacaa atcagaatcc aacaactctt ttttgtatgt acagtaagag cacgtgtccc
     1981 tacacagatt tattaaatta atgaatacct ttctagaata ggtaattatc tcatttttac
     2041 aatcatccct aaccgttttc gctagtgtac atatagattt tgtatcatat ttttctacta
     2101 gttcaagtac ttcatctttg ccaatcggaa agttatgtat attttgaact atgtcctttg
     2161 ttgtagatag atctattcca tccatctgag atttcaatgc cctattacta ttgaaggact
     2221 taattattaa taatttgttt caggacaatc atgcccgtgg tttttcccct acattcaatc
     2281 tttacccgca tcctgccaag tttcatttat ggactgattg gcttgaataa tttcaatgcc
     2341 agatagtttc aatttcatag gtggaatggg tgctgttttg taccaaccaa gtagctcctg
     2401 tcgcgccacc ttaccattcg atttcctttc aaggaaaaag cagacactac gaaactggcg
     2461 gttatcacag tacagcccaa tacaaagcca agaccataaa ttgacttttg taggagaccg
     2521 aaacgagatt gtaaaattgc gcagattagc attatgacaa ttatcaatga acagataatt
     2581 tccaggggtc tcttgactgg attatctgat aaataaagca atgagacggg caacgttaga
     2641 aatggttccg ttagaatgaa aaatataaaa gctgtaacca ttaacgctga ttttttcttc
     2701 tcagcatgta atgggatgat tattcgacgc aatgcatgcc ataatgaacg tggatctctg
     2761 gcccataatg cctccacata gttttcacct ctgaccaatc ttagtttcat tctttgttct
     2821 tttacaattc ttcctagggc gccatcttca accaactctt ggcgtacctg ctcatgcgtt
     2881 ccaatttttt cataatttat tttagatatt atgtaaaaac taccaaaaaa ataaccgatc
     2941 ttgttatttg gattatttac ccgaagcggt gagtatcttg aatgtagaaa taccgaaaga
     3001 acaggtagag tgaattttgt gattaaatct tggcacaaaa gctttggtac caaagtgagt
     3061 gcgtctaatc tatcatgcat catggtattg attgcagacg ataatgcatc tggtttatgt
     3121 actgtatcag catcagtgaa caaaagaatt tttccagttg atttcttgta tccttgaaag
     3181 ca
//
LOCUS       DASPFX010000170         2686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_946557, whole genome shotgun sequence.
ACCESSION   DASPFX010000170 DASPFX010000000
VERSION     DASPFX010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946557"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1049
                     /locus_tag="VD694_03635"
     CDS             <1..1049
                     /locus_tag="VD694_03635"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HXW11828.1"
                     /translation="IENLSKPLRIMNNGNPPDLLGFCEIESEKLARDLCEKIRPGYYE
                     IAKFIDGSDIRGIDTCLVYSRDIFECIETKSFRINFRYPTRDIFLAKLRIKENNAELL
                     VLVNHWPSRRGKKDGFDQYDTEFSRCMVAENCGRIVDDLLKIPFEEIKYLPHEILSDK
                     GYVDKINNRWNKNVLLMGDFNDDPFDKSISKFLRAKNDKGLFMELSESLEISRNTDRD
                     NTDKQHYLEYTSPLYNCMWNLSGFSYYHWRNNSTNLFDQFIISRGLLLGVQKLKMNLD
                     KVRVYNEGLTIGENLSDDYFIPMNPEKYHPAQKGIPMTFEYLRSNGRIPKHRNPNTGY
                     SDHFPIFGTIETLP"
     gene            complement(1088..>2686)
                     /locus_tag="VD694_03640"
     CDS             complement(1088..>2686)
                     /locus_tag="VD694_03640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11829.1"
                     /translation="SQILGGKTHKDAKQAIVTCISDLFSKLEEAGPTDRDFRLITMIQ
                     DVGSGKTHLAFHIKGLPDLFDKTVTSYVDLSQVAPRDIHNIYDSILGGFSRDDIESLR
                     RNILYFLCKKADYHGGSVRKAFNYGFLDNLSGNKHLKKRAEEILKGKSKLNFQYVSEV
                     LATEFSEMQIEIIKSLLEDRLRSDVEKIRSLEGVINSLSAIAIMNLKLLNKITIFQFD
                     EFDSKKESLDFIKAIINAHIPSSILMLILTPSSYDEIKKENSSVFDRLEKANYKIDLA
                     GSNTLGELKDIIFEYIKHYDEKGNFELQQESDLESKIKLVYDEFPDFRNVRSMLNIFY
                     HATEQASKKGSYVLDESIIDETIKCIYPGSKIRGSLMNVPLSDFIQIKRGVDNTQMIE
                     SDIREAIRNLLTLTNYEGYVNELDFDNQVGEGIDVTYNDNYGSKIAVSVVITDEPIKT
                     QAQISNASKSLSIVDKLLVLTGNASRTLGGTSRNGNDVTTIVNMDNTKIVDLIYFNKK
                     YKKQEILNDDLERAITLARSIKLC"
BASE COUNT          854 a          466 c          447 g          919 t
ORIGIN      
        1 agatagagaa tttgagcaaa cctctaagaa taatgaataa tgggaatccc ccagatttgc
       61 ttggcttttg tgagattgag tcagaaaaac ttgccagaga cttgtgtgaa aaaattcgac
      121 ccggctacta cgaaattgct aaattcatag atggatcaga tattagagga attgatacct
      181 gtcttgttta ttcaagggat atctttgagt gtattgaaac gaaatctttt agaataaact
      241 ttcgataccc tactagggat atatttttgg caaagttacg aataaaagaa aacaatgccg
      301 aattgttagt attggttaat cattggcctt ctaggagagg aaaaaaagat ggatttgacc
      361 aatatgatac agaattttca agatgcatgg ttgcagaaaa ctgtggaaga attgtagatg
      421 atctattaaa aattcctttt gaggagatca agtatttgcc acatgaaatc ctttccgata
      481 aaggatatgt ggataagatc aataacaggt ggaataagaa cgtccttctg atgggtgatt
      541 ttaatgatga tccatttgac aaaagtatct caaaatttct ccgtgccaaa aatgacaagg
      601 ggttattcat ggaattaagt gaatcattgg agatctctag aaataccgat agagacaaca
      661 cggataaaca acattacctt gaatacacat ctcctcttta caattgcatg tggaatcttt
      721 ctggattttc atattaccat tggagaaata attcaacaaa cctatttgac caatttatta
      781 tctcaagagg tttattgtta ggagttcaga aattaaagat gaatctagat aaagttaggg
      841 tgtacaatga aggacttacc attggtgaga atctttctga tgattatttt attccaatga
      901 acccagaaaa atatcatcct gcacaaaagg gaattccaat gacatttgaa tacctgagga
      961 gtaacgggcg aattccaaaa cacagaaatc caaataccgg atacagcgat cattttccaa
     1021 tatttggaac tattgaaaca cttccataat gaagcatttg tttattgact tgtctacata
     1081 atcccattca gcataacttt atagagcgcg ccagagttat agctctttcc aagtcatcat
     1141 ttagaatttc ttgtttttta tatttcttat taaagtagat caaatcaaca attttggtat
     1201 tatccatgtt gacaattgta gtaacgtcat ttccatttct cgaagttcct cccagtgtgc
     1261 gacttgcatt tcctgtaagc actaacagtt tgtctacaat actaagtgac tttgatgcat
     1321 ttgagatttg agcttgcgtc ttaattggct cgtcggtgat aacaaccgat acagcaatct
     1381 ttgatccata attgtcgttg tacgtgacat ctattccttc acccacttgg ttgtcaaaat
     1441 ctagctcatt aacatatcct tcatagtttg tcaatgtcaa aagattgcgt attgcctcac
     1501 gtatgtcaga ttcaatcatt tgtgtattat ctacacctct ttttatctga ataaaatctg
     1561 ataatggcac attcatcaga cttcccctaa ttttggatcc cggataaatg cactttattg
     1621 tctcatcaat tattgactcg tctagaacat aggaaccttt ttttgaagct tgttctgtag
     1681 cgtggtaaaa gatattcagc attgacctca catttctaaa atctggaaat tcatcgtaga
     1741 ctagttttat tttggattca agatcacttt cttgctgtaa ttcaaaattt cccttttcat
     1801 catagtgctt tatgtattca aaaataatgt cttttaattc acctaaagtg ttcgatcctg
     1861 ccaaatcaat cttataattt gccttttcca atctatcaaa taccgaagaa ttctcttttt
     1921 tgatttcatc atatgaagaa ggagtaagaa ttaacatgag aattgatgaa ggtatgtgtg
     1981 cattaattat tgcttttata aaatccaaag actctttttt tgaatcaaat tcatcaaatt
     2041 gaaatattgt tattttattg agaagtttta gattcataat agctattgcg ctaagactgt
     2101 ttattactcc ttcaagtgac cttattttct caacatctga tcttaatctg tcttctagta
     2161 acgacttgat aatttcaatt tgcatttcag aaaattcagt agcaagtact tctgatacat
     2221 attgaaaatt tagtttagat tttcctttta gaatttcttc agctcttttc ttaaggtgtt
     2281 tgttaccgct caaattatct aaaaatccat aattaaatgc ctttcttacg gagcctccat
     2341 gataatcagc ttttttgcac aagaaataaa gaatattcct tctcaagctt tcgatatcgt
     2401 cacgactaaa tcctccaagt atcgaatcat aaatattatg aatatctcgg ggagcaactt
     2461 gagagagatc aacataagaa gttacagtct tgtcaaatag gtcaggaagt cccttgatgt
     2521 gaaatgcaag atgggtcttt cctgaaccta catcttgaat cattgttatc aatctaaaat
     2581 ctctgtccgt tggacccgct tcttcgagtt ttgagaatag atcagaaatg caggttacaa
     2641 tggcttgctt ggcatccttg tgtgtcttgc ccccaagaat ctgact
//
LOCUS       DASPFX010000171         4466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1831962, whole genome shotgun sequence.
ACCESSION   DASPFX010000171 DASPFX010000000
VERSION     DASPFX010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4466
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1831962"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..830
                     /locus_tag="VD694_03645"
     CDS             <1..830
                     /locus_tag="VD694_03645"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW11830.1"
                     /translation="KVENIGDGGLLGLALHPNFTQNHLFYVYYTYSNNTGLFNRVLML
                     QESNNKIIDSKTIIDGIPGGEYRDGGRIKFGPDGKLYVSTGDASIPELSQNLDSLAGK
                     VLRVNDDGTIPHDNPFSNSSVYAYGFRNAQSLAWNIDSGDLYVPDQGAAGNDEINLVT
                     PGKNYGWPNEECNGNGENTAPLLCFNPSLEPSGIIFPASDKLGYKDHLIIATLKGSHL
                     REINIETSSQSTILVGYGRIADVVESGDGSIFVLTSNTDGRALPQKDDDKILRLTRS"
     gene            842..2086
                     /locus_tag="VD694_03650"
     CDS             842..2086
                     /locus_tag="VD694_03650"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004420 - hydroxymethylglutaryl-CoA
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0016054 - organic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HXW11831.1"
                     /translation="MTEKKFYQMSLEERLSSIASRSGVARNEISTVVNQPLSFDNIDK
                     MVENAIGSFSLPLGIATNFVINGKEYLVPMAIEEPSVIAAASHAAKLARTRGGFKATA
                     KSSIMRGQIQVTDLLDIKKAMQSVSKHKESLLKLANTVSKNVKAVDLKARVVDNEIDG
                     EKMVVVEIYVDCKDSMGANTINTMCELLGPKIEQGTSGKVILKILSNYATERIAISKA
                     TFKKEELGGAEIVDRILAAFAFAFSDTHRAVTHNKGIMNGIDAVSIATGQDFRAIEAA
                     AHAYASRDGKYRSLTTFSKSSNGDLVGKIEIPLSVGIVGGISTVHPIARLGLKILGVK
                     SASELACVIASAGLAQNLAAIRALSSEGIQKGHMKLHAKNIAVAAGATGKIVDLVSEA
                     MYKESKISLDNARRILHDLKGK"
     gene            2235..3212
                     /gene="hisG"
                     /locus_tag="VD694_03655"
     CDS             2235..3212
                     /gene="hisG"
                     /locus_tag="VD694_03655"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HXW11832.1"
                     /translation="MATVKFAIPKGSIEDATFKILEEAWQTVRGRGRTYRVQLSDPEI
                     EVKILRPQEIPTYVQEGFYDIGITGKDWIIEATADVKILLDLEYGQVNQVVAIPENFE
                     YNNLTELIEGFAKQKRTLRISSEYLTTTSARIRSNKAYQKYYGDIRPMIITPWMRIGE
                     NKLVEIFLSFGATEAKPPEDVDAICDITETGTTLVQNNLKLIETLGHSSAQLIANKNS
                     LEDKVKAEKIADIMALIKGVVEARKKLHIFVNVKEENLQKLLDSLPALKRPTISKLSE
                     EGWFGVNTVIDKNEYIKIVPKLREIAQGLVVMQPKQILPLEELKQVMNK"
     gene            3209..>4466
                     /gene="hisD"
                     /locus_tag="VD694_03660"
     CDS             3209..>4466
                     /gene="hisD"
                     /locus_tag="VD694_03660"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HXW11833.1"
                     /translation="MIKKIIVKNALKEANLIRRSNRIPQKSEIVEKIINDVIRFGDSA
                     VLKYTKKYDKIKINSIRVEKSELERAYNKVTNNQLNSLKRSKKLLEKNERILLSRLTG
                     IMSSENGITIKRALKPMESVGCYVPGGRARYPSTLMMCAVPAMVAGVNRISVVSPPMK
                     DGGIDPVTLVAADICGIDEVYSVGGAQAVAALAYGTETIKKVDKIVGPGGLFVNIAKF
                     LVSNKIAIDMIAGPTELLIYADSRSNPRYVVKDLISQAEHSQDTICGVVTTSESLVKK
                     LENEINNTLNSSLLRSEIILSSLKKNGFIALCKNEDDCISFMNELAPEHLQVISENPS
                     RIASRINTAGVVLLGKYSPSSASDYCLGSNHVLPTIEFGKSKSSLSVLDFVKLVNHIT
                     VTKTGLQSVQKYIKELAFAEGLPNHYF"
BASE COUNT         1540 a          759 c          955 g         1212 t
ORIGIN      
        1 ttaaagttga aaatatcggt gatggaggat tgcttggact tgcgttgcat ccaaatttta
       61 cacagaatca tcttttctat gtttattaca catattcaaa caacactgga ctgtttaatc
      121 gggtgctgat gcttcaagaa agcaataaca agataattga ttcaaagaca ataatagatg
      181 gcattccagg gggagagtat cgtgatggcg gtcgcattaa gtttggccca gacgggaagt
      241 tatatgtctc aactggagat gcatcaattc cggaactatc tcagaatttg gactctctgg
      301 caggaaaagt tcttcgtgtt aatgatgatg gaactattcc acacgataat ccattttcaa
      361 attcaagcgt gtatgcatat ggttttagga acgctcaaag cttggcatgg aatatcgaca
      421 gtggtgacct gtatgttccc gatcaaggag cagctggtaa tgatgaaata aatctggtga
      481 caccaggaaa aaattatgga tggcccaacg aagaatgcaa tggtaacggt gaaaacaccg
      541 ctccattgtt atgtttcaat ccatcccttg aaccttcagg cattatcttt ccagcttcag
      601 acaaattggg atataaggat catctgatta tcgccacttt aaagggatcc catttaagag
      661 aaattaacat tgaaacaagt agtcaaagta ccatacttgt tggttatggc cgaattgcag
      721 atgttgttga atctggggac ggatctattt ttgttcttac cagtaatacc gatggaaggg
      781 cattgccaca gaaagatgat gacaaaatat taaggcttac tagatcatag tagtcgtacc
      841 aatgacagaa aagaaatttt accagatgag tcttgaagaa agactatcat caatagcatc
      901 aagaagcggt gttgcgagga atgaaatttc cactgttgtt aatcagccat tatcttttga
      961 caatattgac aagatggtag aaaatgcgat aggaagtttt tcgctgcctc ttggcatagc
     1021 aacaaatttt gtgattaatg gcaaagaata ccttgttccc atggctatcg aggaaccttc
     1081 cgttattgca gccgcaagtc acgcagcaaa actggccaga actaggggtg gattcaaggc
     1141 tacagctaaa agctctataa tgaggggtca gattcaggta accgatcttt tagatatcaa
     1201 aaaagcaatg cagtccgttt caaaacacaa ggaatcattg ctcaaactag ccaatacggt
     1261 ttcaaaaaat gtaaaggcag tcgatctgaa ggcaagagtg gttgataatg aaattgatgg
     1321 agaaaaaatg gtggtggttg aaatttatgt tgattgtaaa gactcgatgg gagcaaatac
     1381 cataaataca atgtgcgaac ttttgggtcc taaaatagaa caagggacaa gcggcaaggt
     1441 tattctcaag atactttcca actatgccac tgagagaatc gctatcagta aggccacctt
     1501 caagaaggaa gaactcggag gagctgagat tgtggatagg atacttgctg cttttgcttt
     1561 tgccttttct gatacccacc gcgcagtaac acataacaaa ggaatcatga atgggattga
     1621 tgcggtttct attgcaacag gtcaggattt tcgcgcaatt gaagcggctg ctcatgcata
     1681 tgcgtcaagg gatggcaaat accgatcgct tacaactttt tcaaagtcgt caaatggcga
     1741 tcttgtaggt aaaatagaaa tccccttatc agttggaatt gtaggtggaa tatcaacagt
     1801 ccatcctatt gctagattgg gactgaaaat attgggggta aaatcagcaa gcgaactagc
     1861 ctgtgttatc gcatctgccg gacttgcaca aaatttggca gcaattaggg cactatcatc
     1921 agaagggatt cagaaggggc atatgaaact tcatgcaaaa aatattgctg ttgcagcggg
     1981 cgcaactggt aaaatagttg atttggtctc agaagcaatg tacaaggagt caaagattag
     2041 tttagataat gccagacgaa ttctacatga tttgaaaggt aagtgatgat tcgtctaaca
     2101 atattagagt gctttaataa ataattttga acaatttttc ataataaacg tattaataat
     2161 tttcagaaaa gaaactctac caataattta ttcaatagaa atatatccca ttagtaagat
     2221 ccttttggta tcagatggca acagtaaaat ttgcgatacc aaaaggcagt atcgaagatg
     2281 cgacatttaa gatccttgag gaggcttggc aaactgtcag gggtcggggt agaacatata
     2341 gggttcaact aagcgatccg gaaatagaag taaaaatcct caggccacaa gaaatcccaa
     2401 catatgtaca agagggattt tacgatattg gaattactgg taaggactgg attattgaag
     2461 caactgcgga tgtcaaaatt ctattggatc tagaatatgg tcaggttaac caggtcgtag
     2521 caattccgga aaattttgaa tataacaact tgactgaact aatagaaggt ttcgctaaac
     2581 agaaacgaac cttaagaatt tcatcagagt acctgactac tacttctgct cgtatacgtt
     2641 ctaataaagc ataccaaaaa tattatggag atattcgtcc tatgattatt acaccatgga
     2701 tgagaatagg cgaaaacaaa ttggttgaaa tctttctatc ctttggtgct accgaggcaa
     2761 aaccccccga agatgttgac gctatatgcg atattacaga aactggaact actcttgttc
     2821 aaaacaattt gaagctcatt gaaacattgg gtcattcaag tgctcagcta attgcaaaca
     2881 agaattcatt ggaagataaa gtaaaggcag aaaaaatcgc tgacataatg gcactcatca
     2941 agggtgttgt ggaagctaga aagaaacttc acatttttgt gaatgtgaaa gaagagaacc
     3001 tgcaaaaatt gttagatagt ttacccgcac tcaaaagacc gacaattagc aaattaagtg
     3061 aagaaggctg gtttggtgtc aacacagtca ttgacaaaaa tgaatacata aagatagttc
     3121 caaagttaag agagatagcc caaggacttg ttgtgatgca gccaaaacag atacttccac
     3181 tagaggagtt aaaacaggtc atgaataagt gatcaaaaaa ataatagtaa agaatgcact
     3241 caaagaagca aatctcattc ggcgttcaaa ccgtatccct cagaaaagcg aaattgtaga
     3301 aaagataatt aatgatgtta tcaggtttgg agatagtgcg gttctaaaat ataccaagaa
     3361 atatgataaa ataaaaatca attccataag agtagaaaaa tccgaactag aaagagctta
     3421 taacaaggta acaaacaacc agttgaattc cttaaagagg agcaaaaaac ttcttgaaaa
     3481 aaatgagaga atacttttga gtcgattgac aggaattatg tcatctgaga acggaataac
     3541 gataaagaga gctctcaaac caatggaaag tgttggatgt tatgtcccag gtggacgagc
     3601 aagataccct agcactttga tgatgtgtgc tgttcctgca atggttgcgg gcgtaaacag
     3661 aatatccgta gtaagtcctc caatgaaaga tggcggtatt gatcctgtca cgctagtggc
     3721 agctgatata tgcggtattg atgaagtcta cagtgtcgga ggtgcccagg ctgtagcagc
     3781 tcttgcatat gggactgaaa caataaagaa agttgacaag attgttggac cagggggatt
     3841 atttgttaat attgcaaaat ttcttgttag taacaagatt gccattgaca tgatagcagg
     3901 tccaactgaa cttttgatat acgcagattc aagatctaat ccccgatatg tagtcaaaga
     3961 tctgatatct caggcagaac acagtcagga tacaatttgt ggtgtagtta ctacttcaga
     4021 gtctctggtt aagaaattag aaaatgaaat taacaataca ttgaatagtt ccctattgag
     4081 atcggaaata atcttatcca gcctgaaaaa gaatggcttt attgcactat gtaaaaatga
     4141 ggatgactgt atatcattta tgaacgaact tgcgccagaa caccttcaag tcatatcaga
     4201 aaaccccagt agaattgctt ctaggataaa tactgcaggt gttgtgttac tgggtaagta
     4261 cagtccatca tctgcaagtg attattgtct tgggtcaaat cacgtgctac caacaataga
     4321 atttggcaaa tcaaagtctt cattatcagt acttgatttt gtaaaattag ttaaccatat
     4381 tacagtaacc aaaaccggtc tccaatcagt tcaaaaatac ataaaggaac ttgcctttgc
     4441 agaaggttta ccaaatcact attttg
//
LOCUS       DASPFX010000172         2483 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1382367, whole genome shotgun sequence.
ACCESSION   DASPFX010000172 DASPFX010000000
VERSION     DASPFX010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1382367"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            491..1681
                     /locus_tag="VD694_03665"
     CDS             491..1681
                     /locus_tag="VD694_03665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11834.1"
                     /translation="MLGSTNMKMQDESKSLTSSKQHVNPVLFVACFAAGAMAIFASVS
                     LYAGFVQGQESGGTGAGPVQNATNMSSSAPNSTLVDFDSNIEQIIGHLEQAIANKEIG
                     NTTLAKAHTLHPIEEIYSSIAVQIDAADPGLNQSLSSSLGQLSNMVDNSTVEEFKSKA
                     SDINGLLNDTVGKVIPVQEINDSGFNLMVVGNLLSVANNEYKEAIENGQLKEIVEYQD
                     GQAFISRANSIFNETSPLIPQEMSADVPVINGFFTDLRNAVQEKSNPEVVSNAIGSIT
                     HEIAEVTGISEENISGTGNDTSAYIPEIRNLLNQTLDAYRNQNYDQADALAIQAYLDN
                     YEFVEAPLAEQNRTLMESTELMLREDLRQLIQTQVPIEQLQEQIDKINSNLDQAEELL
                     AASG"
     gene            complement(2000..>2483)
                     /locus_tag="VD694_03670"
     CDS             complement(2000..>2483)
                     /locus_tag="VD694_03670"
                     /inference="COORDINATES: protein motif:HMM:NF026183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HXW11835.1"
                     /translation="SQTKSLLKDLSKQVFYVGLSHATASTLKLAVNINIALIALALAE
                     GLTFVKGSGLNPDIFIRIFNSTYFKTGVSENKGPKIIRDEYATSFSVSNMAKDLELTL
                     QTAYSSGLTLPATASTHAIYKASEAVGLSGLDYTSIASFKMELVASEKGNGRLEVLTF
                     "
BASE COUNT          807 a          449 c          502 g          725 t
ORIGIN      
        1 aattgacaag tacatatgaa taaatgaaat ttgaattcta acaattgtga agacgcataa
       61 aggcattgcc tctactttat tcctgaacta ccacctcgca tgggaagata atatcctacc
      121 cggcaaagga tttggtcagt ataatatcaa gaagttagag cgaaatatgc tcgtgatgtt
      181 gccgagtagg attgtaggtt agatttcgaa tgttccaaat gtgactgtaa aaatacaaat
      241 atacagatgc caattgcatg ttatccagac attttgcggt catcatttat tctccacttc
      301 tttgatatta gaccagtcta attagtctaa actaatattt attgcctatg ctgattttct
      361 gtccctagaa tgagggatat atcagtatat cttcctctat taattgcgat ttatccaatg
      421 aagggttaaa atttaaattt gttgttctcc cgatcgagaa tcatcaaatg agataaatag
      481 taaatactta gtgttaggtt caactaatat gaaaatgcaa gatgaatcga agagtttgac
      541 ttcaagtaaa caacatgtca atccagtact ttttgtagct tgtttcgctg ctggtgctat
      601 ggccattttt gcatcagtat ctctatacgc aggatttgtg caaggacaag aatcaggggg
      661 aacaggagct gggccagtgc aaaatgcgac gaatatgagc tctagtgctc caaacagcac
      721 attggtagat tttgattcaa atattgagca gatcatagga cacttagagc aggcaattgc
      781 aaacaaagag attggtaaca cgacgttggc aaaggcacac acccttcatc caatcgaaga
      841 aatttatagt agcatcgcag tccagataga tgccgcagat ccaggtctga atcaatcgtt
      901 atcatcttct ttgggtcagc tttcaaatat ggtagacaat tctactgtag aggaatttaa
      961 gtccaaggct tcggatatca atggactact caatgatact gttggtaagg tcattccagt
     1021 tcaagagata aatgacagtg gattcaatct catggtcgta ggaaacctat tatctgtagc
     1081 aaataacgaa tacaaagaag caatagagaa tggtcaatta aaggaaatag tagagtatca
     1141 agatgggcag gcatttattt cgagagctaa ttcaatattc aatgaaactt ctccattgat
     1201 ccctcaagaa atgtcagccg acgttccggt aataaacgga ttcttcacag atcttagaaa
     1261 tgcagttcag gaaaagtcaa atcccgaagt tgtatctaat gcgattggat cgattacaca
     1321 tgagattgca gaggtgaccg gtatcagtga agagaatatc tcgggtacag gtaacgatac
     1381 ttcagcatac atccctgaga tccgcaattt actaaatcaa acacttgacg catacagaaa
     1441 tcagaactat gatcaagctg atgctctagc tatacaagca tatctagata actatgaatt
     1501 tgtagaagct cctttagcgg aacagaatag gaccctaatg gagtcaactg aattgatgct
     1561 tagagaagac ttaagacagt tgatccaaac ccaagtgcca atagagcagt tacaagagca
     1621 gatagacaag attaatagca acttggatca agcagaggaa ctcttggcgg cctcaggtta
     1681 aatcgaaggc cattttttta tgaggaagac cacccgcaac tattttttgt gttgtctgaa
     1741 taaatgctat attatcgatg ttgaatagta cttaaagtca atcaatagtg aggtatcagc
     1801 tttttttgtc ttttacgtat ttaaatcacg taagttaacg gatattttaa gaattcattt
     1861 tattttattg ttgcttaatg gtgatctgcc tgcctctgaa cattgcaaca gataaaagtg
     1921 tactcaaaga cattaggcga ctttaactgt ccgtaaagtc gtaaattgtg gaaatcgacg
     1981 ttgagttatt gagactacac taaaaagtca gtacctctag tctgccgttt cctttttccg
     2041 aagcgactaa ttccattttg aaagaagcta ttgaagtgta atccaagccc gataggccaa
     2101 cagcttctga ggctttgtaa atagcatgag ttgaagcagt agctgggagt gtaagacctg
     2161 aactatacgc tgtctgcaac gtcaattcta gatcttttgc catattcgaa acagagaagg
     2221 aagtggcata ctcatcacga ataatttttg gtcccttgtt ctcacttacg ccagtcttga
     2281 agtaggtaga attgaaaatc ctgataaata tatccgggtt taaaccagag cctttcacaa
     2341 atgtcaaacc ctctgcaagt gcaagagcta ttaatgcgat attaatgttg accgcaagct
     2401 taagcgtact tgcggtagca tgacttaacc cgacataaaa tacttgttta ctaaggtcct
     2461 tgagcaaaga tttggtctgg ctg
//
LOCUS       DASPFX010000173         3726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_597053, whole genome shotgun sequence.
ACCESSION   DASPFX010000173 DASPFX010000000
VERSION     DASPFX010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3726
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597053"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VD694_03675"
     CDS             complement(<1..610)
                     /locus_tag="VD694_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HXW11836.1"
                     /translation="MNIKEIFILSFDALKERKTKSILTIIMVMVGSSLMVAVGGISAG
                     FGGFFNKQLSNLAANIIFINPAQVQQGGGGPVVGPPPTPKITLNVAVENRLKSLPFVD
                     DVIPSYQSQVILESQGDSKEYQIFSMDPQKLTVLSPTIEFVEGSSVQQNDPSAIIISN
                     DLANPPGEPAPFLKLFQTVKATYTFVDPTTGKREQESKSFVVR"
     gene            complement(626..3244)
                     /locus_tag="VD694_03680"
     CDS             complement(626..3244)
                     /locus_tag="VD694_03680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11837.1"
                     /translation="MSLFLNGSILSPYSTFIYFVLADSEDSKDNKDKEVSDNSNEEEK
                     SFEKNSDNEDNTSSEKSDEQVPPSQDNPPNQDDLKEEEPSTNEEQNPPKEEEPPEEEP
                     PEEEPPQQEASPPIIITNTVTAPAVSSPSDDEDDDENEGPTKFAFIDSFFTDQIAQGS
                     VIAATSSDSSATQDIPPVTKQEVGPGEGDSILAIVLINRGFSDVTSIRATLDFPSGFS
                     SNITPKNIDNDTSLASYNGLVEAGQTFTLYFPVNISKDTQVGKEYTASLNIDYFNIAE
                     KDEENMRDRTLKIPFMLSGKVILDTISFSSSESSTSFNQTFPDTNSMVPNVVNLVPGA
                     ANIVQTLIKNEGSAAATGVIVEVSSRNQQDRFDNDNLIPTSSNTGNSSSTTVQQSTVI
                     PLISAGTTTFNVGIIPAGESIQINPVIFASNSVGSILENIDLRISYNNAYGYKKTLDK
                     SMGVHILPSSPQSGLTLSSSVTTAKTTSSMPPLSEKINQNSGEYGLVSADNYGTNRQN
                     LTYPISQISEFTSGDSSLMPNDVQSNNTSNIGIGLDATSNKNTVSLIAGRVDELKFNI
                     SNTNENPIIDAVVSLDSESSSIKILGDSKWNLNKIDPLATEQFQTRVFASKSLINSPV
                     SFKVSIQYLDNNEAKSDSFNLGANVIGDITVNINDLAINYIGGNPNLVGNILNKGNTL
                     ALFTTIEILSSSSSPANQSKGKLPSSTQTLEKKTILVPASSFPQYLGDLEENSPLPFS
                     IPLAMNNNTASGIYPVSLKVTYSDDLRNSFTVINNGTVEFISPITTTNKGQGFLGNYD
                     SLLVALILAIGGIFGIFIIRRLRSKKKADNKNYESGHDDSDTGNDDENIAGNTDDIES
                     ILGEEGSNFKENFQKK"
     gene            complement(3319..>3726)
                     /locus_tag="VD694_03685"
     CDS             complement(3319..>3726)
                     /locus_tag="VD694_03685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HXW11838.1"
                     /translation="LINRTNVLKNVEFPAIIGGMNKSERRIRATKLLGFLGLKSKIKS
                     KPSNLSGGEQQRVAIARSLMNNPAIILADEPTGNLDTKTGADVFGLLKLLSDKFKRTI
                     VMVTHNPELAANTDRSIHIKDGKIEKQVINFGA"
BASE COUNT         1047 a          681 c          703 g         1295 t
ORIGIN      
        1 ctcttacaac aaaactttta gattcttgct cccgctttcc tgttgtagga tccacaaacg
       61 tgtaagtggc tttcacagtt tgaaacaatt ttaagaatgg tgctggctcg ccaggtggat
      121 ttgccaaatc atttgaaatg attatggcag atggatcatt ttgctgtaca gaagatcctt
      181 caacaaattc aatggtagga gaaagtaccg ttagtttctg aggatccatt gagaatattt
      241 gatattcttt tgaatcccct tgagattcca aaatcacctg agattggtat gatggaatta
      301 catcatcaac aaagggcaaa gattttagtc tattttcaac tgccacattt agtgtaattt
      361 ttggagttgg tggtggtcca actactggtc ctcctccacc ttgttgcact tgggcaggat
      421 ttatgaaaat gatattggct gccagattac ttagctgttt gttgaaaaaa ccaccaaatc
      481 cggcactgat gcctcctact gcaaccataa gactgcttcc aaccattacc attattatag
      541 tcagtataga tttagtcttt ctttctttca aggcatcaaa agataaaata aaaatttctt
      601 taatattcat aatacaggca actcattact ttttttgaaa attctccttg aaatttgacc
      661 cttcttcacc taagattgac tctatatcat cagtgttacc tgcgatattt tcatcatcat
      721 taccagtatc tgaatcatcg tgtcctgact cgtagttttt gttgtctgct ttctttttgg
      781 atctcagtct tctaataatg aatatcccaa atattccgcc tatagctaat atgagtgcaa
      841 ctagtagcga atcataatta cccaaaaatc cctgaccctt gttagttgtg gtgataggag
      901 agataaactc tacagttcca ttattgataa cggtaaaact atttctcaga tcatcactat
      961 atgttacttt taatgacacg ggataaattc cagaagctgt gttattgttc attgccaagg
     1021 gaatactaaa tgggagagga gaattctcct ctaagtcgcc aagatactga ggaaaggaag
     1081 aggcaggtac gagaatcgtc tttttttcta atgtttgtgt agatgatggt aattttcctt
     1141 tactttgatt agctggacta gatgatgaac tcaatatctc gatagtggta aacaatgcta
     1201 gtgtattacc tttgtttaaa atattcccaa caaggttcgg attgccaccg atgtaattaa
     1261 tagcaaggtc attaatattt actgtaatat cacctattac atttgcgcct aaattaaaag
     1321 aatcagattt ggcttcgtta ttatccaaat attgaatcga tactttgaag gatactggac
     1381 tgttgatcaa agattttgaa gcaaaaactc tggtctgaaa ttgctctgtg gcaagtggat
     1441 ctattttatt caaattccat tttgaatctc cgagaatctt tattgagctg gactctgaat
     1501 caagggagac tacagcatct ataattggat tttcattggt attggagatg ttgaatttta
     1561 attcatcgac tctgcccgct atcagggaaa ctgtgttctt atttgaggtt gcgtctaaac
     1621 caatgccaat attggatgta ttattacttt gaacatcgtt tggcataagc gaactatcgc
     1681 cagaagtgaa ttcactaatt tgacttatag gatatgttaa attttgtctg tttgtcccgt
     1741 agttatcagc actaaccaat ccatattctc cactattctg attaatcttc tcagatagag
     1801 ggggcatact gctagtggtc ttagcggtag taaccgaaga ggaaagagtc aatccggatt
     1861 gcggagaaga aggtaggata tgaacaccca ttgatttgtc taatgtcttt ttgtaaccat
     1921 atgcattatt gtatgatatc ctaagatcta tattttcaag tatgctacct acagaattgc
     1981 tggcaaatat tacaggattt atctgaatac tttcaccggc gggaattatg cccacattaa
     2041 atgttgttgt tcctgcacta atcaaaggaa ttacagtaga ttgctgtact gtagttgagg
     2101 aactattgcc agtattacta gatgtgggaa ttagattgtc attgtcgaat cgatcctgct
     2161 gatttctgga tgaaacttca actataacac cagtagctgc tgcagagcct tcattcttaa
     2221 tgagagtttg cacgatatta gctgcccctg gcactaagtt taccacgttt ggaaccatcg
     2281 aattagtatc tggaaatgtc tgattgaaag aagttgagga ttccgaagat gaaaaagata
     2341 ttgtgtctaa aataacttta ccactaagca taaatgggat ttttaatgtt cggtctctca
     2401 tgttttcttc gtctttctct gcaatgttaa aataatcaat gttcagcgaa gcagtatatt
     2461 ccttacccac ttgagtatcc tttgagatat ttactggaaa gtatagggta aatgtttgac
     2521 cagcttctac gagaccatta tagctggcta acgaagtatc attatcgata ttctttggag
     2581 ttatgttgga cgaaaaccca gatgggaaat caagcgttgc tcttatgctc gtgacatcag
     2641 aaaatcctct gttaataagt actatggcaa gtatggaatc tccttcccct ggtccaacct
     2701 cttgttttgt tacaggagga atatcctgtg ttgctgatga atccgaagag gttgcggcga
     2761 ttacagatcc ctgagcaatt tgatctgtga aaaaggaatc tataaatgca aatttggtag
     2821 ggccctcatt ttcatcatca tcttcatcat cacttggtga actgactgca ggtgcagtaa
     2881 ccgtatttgt aattattatt ggaggtgatg cttcttgttg aggaggttct tcctcaggag
     2941 gttcttcctc aggaggctcc tcttcttttg gtggattttg ttcttcattt gtggaaggtt
     3001 cctcttcttt taaatcatcc tggtttggcg gattatcctg gcttggtgga acttgttcat
     3061 ctgatttttc tgatgaggta ttatcttcgt tatctgaatt cttttcaaat gatttttcct
     3121 cctcgttact attgtcggaa acttctttat ccttgttatc tttactgtcc tcagagtcag
     3181 ctaatacaaa gtaaataaat gtagaatatg gacttagaat actaccgttt agaaataagc
     3241 tcatgcatga taataagaga aaaactcgta gacaattacc agagtaaatg aaattatatt
     3301 tattactgaa ggtcatgatc aagccccaaa gtttattact tgtttttcta tttttccatc
     3361 tttgatatgt atggacctat ctgtgtttgc tgccaattca ggattgtggg ttaccatgac
     3421 tattgttcgc ttaaacttgt ctgatagtag cttcaataat ccaaaaacat ctgcgccggt
     3481 tttcgtgtcc agattacctg ttggctcgtc tgcaagtatg atagcaggat tattcattag
     3541 agatctggct atagccaccc tttgctgttc tccaccactc aagttagagg gtttggactt
     3601 tattttggat tttagtccca agaagcctaa caattttgtt gccctaatcc ttctttcaga
     3661 tttattcatt cctcctatta ttgctggaaa ttctacattc tttagtacat ttgtcctatt
     3721 gatcaa
//
LOCUS       DASPFX010000174         2728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1788190, whole genome shotgun sequence.
ACCESSION   DASPFX010000174 DASPFX010000000
VERSION     DASPFX010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1788190"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VD694_03690"
     CDS             complement(<1..461)
                     /locus_tag="VD694_03690"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HXW11839.1"
                     /translation="MIVDLNVNNKKAIVIGGGTEGLRKINGLLDQDCEITVITSRLNA
                     QLKKLMSDGKINLIKSRIKDVKILDKFKDVYLILAATDDRVLNRKLVEKGRSMGAFVY
                     AADDPEISDFSYASLLNYEGLIQVAISTSGKSPIMARKIRMKLEKMIHRSI"
     gene            565..1962
                     /gene="sufB"
                     /locus_tag="VD694_03695"
     CDS             565..1962
                     /gene="sufB"
                     /locus_tag="VD694_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HXW11840.1"
                     /translation="MTSDLNMDYSKYDFKDSTELYVYLSKKGLSRGTVEEISKLKGEP
                     DWMREFRLRSYEVFLSKPMPNWGGDLSHIDFQNIYYYAKASEKQSKSWDDVPESVRNT
                     FEKLGIPEAERKFLAGVGAQYESEVVYHNLREDLEKQGVIFTDTDSAVKKYPDILKKH
                     FGKVIPPEDNKFAALNSAVWSGGSFIYVPRNVKVDLPLQAYFRINAENIGQFERTLII
                     ADEGAEVHYIEGCTAPVYTTESLHSAVVELIAKKGAKIRYTTIQNWSKDVYNLVTKRA
                     YAYENATVEWIDGNLGSKLTMKYPGVYMLGKRAHAEVISIAFAGSGQHQDAGAKAVHL
                     APETTSRITSKSVSKDAGRTTYRGLLHVAKGATGVKSNVRCDALLLDKNSRTDTYPYV
                     EVNEDDATISHEATVGKIGEDQIFYLMSRGFSESVALSLIVGGFMEPFTKELPMEYAV
                     ELNRLLKLEMEGSVG"
     gene            2141..>2728
                     /locus_tag="VD694_03700"
     CDS             2141..>2728
                     /locus_tag="VD694_03700"
                     /inference="COORDINATES: protein motif:HMM:NF014061.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EMC3/TMCO1 family protein"
                     /protein_id="HXW11841.1"
                     /translation="MDFTYLIMQAFLSPHFVQNPPLPFSFFSMIIAALIAIFMNIGFS
                     LLRKKTTDIEKMSKIMKESVEFRKQMMAAVKKQDKELIAELKKKQAYVNKMNMEIQQQ
                     QMKPMFIYMIPSFLLWILVFPTIFGQVVALSPIDLDPGIAWVTCDEKNVENDTKLKDD
                     KQPTGPCKIPGQVYLVGWFLIVNFAFSGIISKLTKT"
BASE COUNT          882 a          480 c          531 g          835 t
ORIGIN      
        1 ttaatactcc tatgaatcat cttttctaat ttcatcctta tttttctggc catgattgga
       61 ctttttccag aagttgaaat tgcgacttgt attagacctt cataatttag caatgatgcg
      121 tatgaaaaat cgcttatctc cgggtcatca gcagcatata caaaagctcc catggatctt
      181 cccttttcca ccagtttcct attcaggact ctgtcatcag ttgcagccaa aatcaagtat
      241 acatctttga atttgtccaa aatcttgaca tccttaattc tgctttttat caagttaatt
      301 tttccatcgg acatcaattt tttgagttga gcgttaagtc tgcttgttat tactgttatt
      361 tcgcaatctt gatccaaaag cccatttatt ttgcggaggc cttcggtacc gccacctatc
      421 acgatcgctt ttttgttatt tacgttaaga tcaactatca attgggaact cctgatgatc
      481 tatcaatttg atgacaatgt ctttatttaa tcgttccatg ggtgtaatca agcatttcat
      541 tttttcaatt ccaagcaatt tttaatgacc tcagatctga acatggacta tagcaagtat
      601 gactttaaag attctactga gctttacgtg tatttaagta agaaagggct ttctagggga
      661 accgttgagg agattagcaa acttaaaggt gaacccgatt ggatgcgaga atttagatta
      721 agatcctatg aagtatttct aagcaaacca atgccaaatt ggggtggaga tttatcacat
      781 attgattttc agaatatcta ctattatgcc aaagcttctg aaaaacaaag taagagttgg
      841 gatgacgttc cagaatctgt gaggaacact tttgaaaaat taggaattcc tgaggcagaa
      901 agaaagtttc tcgctggagt aggtgcacaa tatgagtcag aagtcgtata tcataatctc
      961 cgagaggatc tagaaaaaca aggagtaata ttcaccgata ctgacagtgc ggtaaagaaa
     1021 tatcctgata ttttgaagaa acactttggt aaggttattc ctcctgaaga taacaaattt
     1081 gctgccttaa acagtgctgt ttggtccgga ggatcattta tctatgttcc acgaaacgta
     1141 aaagttgatc tcccacttca ggcatatttc agaatcaacg cggaaaatat tggtcagttt
     1201 gaaagaacgc ttatcatagc agatgaaggt gcagaagtgc attacattga aggatgtact
     1261 gcacctgtat atacaaccga atcacttcat tctgcagtag tagagctaat tgcaaagaaa
     1321 ggcgcaaaaa tcagatatac gacaattcag aattggagta aagacgtata caatctagtt
     1381 accaaaagag catatgctta tgaaaatgca acagtagagt ggatagatgg taaccttgga
     1441 agtaaattaa cgatgaaata cccaggtgtt tacatgcttg gtaaaagggc acatgctgaa
     1501 gtaatttcaa ttgcttttgc aggtagtgga caacatcaag atgccggagc taaagcagtg
     1561 catcttgctc cagaaacaac atctagaatt acgagcaaat ctgtaagcaa agacgcaggg
     1621 cgcacaactt atcgaggact actacatgtc gcaaagggtg caacgggtgt taaatctaat
     1681 gtccgatgtg acgctttgct ccttgacaaa aactctcgaa cagacactta tccatatgta
     1741 gaagtaaatg aggatgatgc cacaatatct catgaagcaa ctgtaggcaa gataggtgag
     1801 gatcaaattt tctatctgat gagtagagga ttttcagaat cagttgccct atctttgata
     1861 gttggtggtt tcatggagcc gtttacaaag gagctaccca tggaatatgc agttgaactc
     1921 aatcgactgc taaagttaga gatggaaggc tcagtcggat aaacaataga acggaacaca
     1981 cgttcactct tcatttttga atatttcagc acgcgtattt gatgaatttt tcgtcttgac
     2041 gaatcggaca agatccattt tcattttttc aaactgaaat ccttataagc cgcttaatgt
     2101 ggtttctttc taaatcatag gggtttatgg agaactttaa atggatttta catatctaat
     2161 tatgcaggcg tttcttagtc cacacttcgt tcagaatcct ccgttaccat tctcgttttt
     2221 ctcaatgatt attgcagctc ttattgctat ttttatgaac ataggatttt cactactcag
     2281 aaagaaaaca accgatatag aaaaaatgag taagattatg aaagaatcgg ttgaatttag
     2341 aaaacagatg atggctgctg tcaagaagca agacaaagag ttgatagccg aattaaagaa
     2401 gaaacaggct tatgtaaata aaatgaatat ggaaatacag caacagcaaa tgaaacccat
     2461 gttcatctat atgataccat cttttctatt atggattcta gtttttccca ccatttttgg
     2521 tcaagtggta gcactttcac caatcgatct tgatcctgga atagcgtggg taacatgtga
     2581 tgaaaaaaat gtagaaaatg acactaaatt aaaagatgat aaacaaccta caggaccgtg
     2641 taaaattcca ggtcaagttt atttggtggg atggtttcta attgttaatt ttgccttcag
     2701 tgggataatt tcaaaactta cgaagaca
//
LOCUS       DASPFX010000175         2227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2108750, whole genome shotgun sequence.
ACCESSION   DASPFX010000175 DASPFX010000000
VERSION     DASPFX010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2108750"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2111
                     /locus_tag="VD694_03705"
     CDS             <1..2111
                     /locus_tag="VD694_03705"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HXW11842.1"
                     /translation="YYQRIIYRAGSIGSNLLFAVAIFIIARNVPSERVKDYLTVAAIG
                     IATVGISFGASALQQTFGVAAHSYVLLSSYLFIIGFYASAIFLSQDAKLRRAIKNSAI
                     EESNLLVSVGLPRIEQEIERRVLTATQRQEKALIEETGVQPSLTAQEMKQYLSNVLKE
                     IKLLHNFDEILDKGKEILESSSEFLACLKYTGLRLAYDNYFNIYERIMEKYKKGQHKG
                     IRWVTTVDQNTADLVKAFLRIGIEIRHVKNMPPIDFALSDKELVATIQKLEKGGHSIQ
                     NLLVSSESAYIDHFVSIFNDLWAEGTDAKDRIKSIEQGLEPEFLDVINDHKKASQILI
                     ELAKSVKKEALILLPNDKALKRIDRLGIIDYLTKESKNGAVIKIICPLSERNSELVKR
                     LSQDAPDIKILNGNNSTSGMFIVDGEKFIRAELSDPDAENFSDAIGFTIYSNSKLSVE
                     SFKSVFELLWKEHVLNDELKKADSMKRDFINIAAHELRTPIQPILGLSEIISHKVSEE
                     ERGYMDVIIRNAKRLHRLTENILDVTRIESQLLRLNKEHFNLNDTISNAIVDLQNQIK
                     GKKDIKIEFSYDDAIFVNADKQRILEVISNLLSNSLKFTEEGVITIATKKQDDDQVVV
                     TVKDSGKGIDSELIPKLFTKFSTKSQQGTGLGLYISKSIVEAHGGRIWAENNTFNGVK
                     GASFHFSLPVDEKVHYAIQS"
BASE COUNT          808 a          364 c          444 g          611 t
ORIGIN      
        1 gatattacca gagaataata tatagggctg gttctatagg aagcaacctc ttatttgctg
       61 tagctatttt tataatagca agaaatgttc cttcagagag ggtaaaagac tatctaacag
      121 tagcagcaat tggtattgct acagtaggaa tatcatttgg tgcttctgcg ttgcagcaga
      181 catttggagt tgctgcacat tcctatgtgc tattgtcctc ttatcttttc attataggat
      241 tttatgcctc agctatattc ttatctcagg atgcaaaatt aagaagagca atcaaaaact
      301 ctgcaataga ggaatctaat ctcttagtaa gcgttggttt acctcgaata gagcaagaaa
      361 tagaaagaag ggtactaact gcaacacaaa gacaagaaaa ggctctcata gaagagactg
      421 gagttcagcc ttcccttacg gcacaagaaa tgaagcaata tctgtctaac gttctaaagg
      481 agataaagct actgcataat tttgatgaaa tattagacaa gggcaaagag attttggaaa
      541 gctcttcaga gtttttagcc tgtctgaaat atacgggact ccgattggca tatgacaact
      601 actttaacat atatgaaaga attatggaga aatacaaaaa agggcaacat aaaggaataa
      661 ggtgggttac gaccgtagac caaaatacag ccgatctagt caaagcattt ctaagaatag
      721 gtatagaaat aaggcatgta aaaaatatgc cgcctattga ttttgcactt tctgataaag
      781 agttggttgc tacaatacag aaactagaaa aaggaggcca ctcaattcag aacctcctgg
      841 ttagcagtga atctgcatac atagatcatt ttgtctctat cttcaacgac ttgtgggctg
      901 aagggactga tgcaaaggat aggataaaat ctattgaaca aggactagaa ccagaatttc
      961 ttgatgtaat aaacgaccat aaaaaagcca gtcaaattct tattgagtta gcaaaatccg
     1021 taaagaaaga agcacttatt cttctcccaa atgacaaagc actcaagaga atagacaggt
     1081 tgggtataat tgactatctc acaaaagaat ccaaaaatgg tgcagtaatc aaaatcatct
     1141 gtccattgtc tgaaaggaat tctgagctag taaaaagact atctcaggat gcacctgata
     1201 taaaaattct taatggaaat aattcaactt ctggcatgtt catagtagat ggtgaaaagt
     1261 ttattcgggc agaacttagc gatcctgatg ctgaaaactt ctcagacgca attggcttta
     1321 ccatctattc aaacagcaaa ctaagtgtag agtcatttaa atcggtattt gaattgctgt
     1381 ggaaggagca tgtgttaaat gatgagctaa aaaaagcaga cagtatgaaa agggacttta
     1441 tcaatattgc agctcatgag ttgagaacac ctatacaacc tatacttggt ttgtctgaga
     1501 ttattagcca caaagtaagc gaagaagagc gtggatatat ggatgtaata ataagaaatg
     1561 ccaaaagatt acaccggctc acagaaaata ttttggatgt tactaggatt gaaagccagt
     1621 tgctaagact gaataaagag cactttaact tgaatgacac tatttctaat gccatagtag
     1681 acttacaaaa tcaaatcaaa ggaaaaaaag atataaaaat tgaattttca tatgatgatg
     1741 ctatcttcgt caacgcagac aagcagagaa tcctagaggt tatctccaat ttgttgagta
     1801 attctctaaa gtttacagaa gaaggtgtta tcactatagc gaccaaaaag caagacgacg
     1861 accaggttgt tgtaaccgtg aaggatagtg gaaagggtat agatagtgaa ttaattccaa
     1921 agttatttac taaattttct acgaaatctc aacaaggaac aggactggga ttgtatattt
     1981 ccaaaagcat agtagaagca cacggaggta gaatatgggc cgagaacaat accttcaacg
     2041 gagtgaaagg agcaagcttc cactttagtc tacctgttga tgagaaggtc cattatgcca
     2101 ttcaatcata aatgggaagc aaaaaagatt gctttgtagc aaattgtcca ctcattaccc
     2161 ctagagagat aatgaacaat ttataggatt ttgtcaatca ggtaattatt tctccttcac
     2221 ttatatg
//
LOCUS       DASPFX010000176         2397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_12252, whole genome shotgun sequence.
ACCESSION   DASPFX010000176 DASPFX010000000
VERSION     DASPFX010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12252"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1798
                     /locus_tag="VD694_03710"
     CDS             <1..1798
                     /locus_tag="VD694_03710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11843.1"
                     /translation="FLVLKLLLAGLMVILGGYSSVVVYNRVISLLKVPQVVNGNRGNH
                     KAPNEDAEFEVKATRTMANFRKALVIESILGIALLVSVGLLVNTGIPASEELKNQVQL
                     GYAQSNQIEHYQSTRFVDDNTQVVMSINPLEVGNNNFKISFMDMNGEPIEVQSAVIKY
                     RQLEKSIGPIIADLEKQSTGVFSANASFGIPGTWDMEVQGIPVKQNVSSIVASFNNLL
                     VKPRFDGLKFNVTNYPISNTTIQPLYPIYDKSRNFIWFGDTIIGSGRIFGFGINSGNY
                     VEHKINGTSIVTLMALDSKNNLWYLDPLTKTIGNYDPSTNLNKQFAFPSYVTPSGITI
                     DSRDRIWITSPTSGEVLIFDSQIGNVTLKLPIDDNKGRPFSIVSDPTNNLIWLTDEGG
                     KLAKIDPANNYSITEYLPGGNQSLQSPTALLIDKLTGEIFISQHDGHKVTSFDPLTRT
                     FTDLPIINESGLPFGMAFDKYGNLWVAEHTINKIAVIDTQKSKIREVTLENSAPFVQW
                     LTSDSSGNIWFAEQRGNSIGMIEPSAGPASAQLTQESNSVSNKSTSSNFELGISYQNF
                     IAPGILIVIVLSALMYVTSITQLKYNIANLTE"
BASE COUNT          796 a          399 c          443 g          759 t
ORIGIN      
        1 atttttggtg ttaaagctgt tactagctgg gttaatggta atcctaggag gatatagcag
       61 tgtagttgta tataataggg ttattagttt gttgaaagtg cctcaagttg tcaatggtaa
      121 tcgtggaaat cacaaggcac caaatgaaga tgctgaattt gaagtaaagg caaccagaac
      181 aatggctaac tttagaaagg ctcttgtaat tgaatcaata cttggaattg cattacttgt
      241 tagcgttggt cttttggtaa atactggaat tcccgcaagt gaagaactta agaatcaagt
      301 ccagttagga tatgcgcaat caaatcaaat agaacattat caatcaacta gattcgtaga
      361 tgacaatacg caagttgtca tgtcaataaa tccattagag gttggaaata ataacttcaa
      421 gatctctttt atggacatga atggtgaacc aattgaggtc cagtcagcag taataaaata
      481 tagacaactt gaaaaatcaa ttggtccgat tattgcagac cttgaaaaac aatcaacagg
      541 ggtgttctct gctaatgctt cctttggtat accaggtacc tgggatatgg aagtgcaggg
      601 aattccagta aaacaaaatg tgtctagcat cgtggcttcg ttcaataatc tactggtaaa
      661 accccgcttt gatggattaa aatttaatgt aactaattat cctatttcaa atactactat
      721 tcaaccacta tatcctatct atgacaagag tagaaacttt atttggtttg gtgataccat
      781 cattggaagc ggtcgtattt tcggatttgg cattaatagc ggaaattatg ttgagcacaa
      841 aattaatgga actagtattg tgacattgat ggcattggat tcaaaaaata atttgtggta
      901 tctagatccg ctcacaaaaa ccataggaaa ctatgacccg tctacaaacc tcaataagca
      961 atttgcattt ccaagctatg ttaccccatc tggaattaca atagattcca gagataggat
     1021 atggataact tcaccgactt caggagaggt tctaatattt gattcacaaa taggtaatgt
     1081 tactcttaaa ttgcctattg atgataataa aggacgcccg ttttcgatag tctcagatcc
     1141 tacgaacaac ctgatatggt taaccgatga gggtggaaag ttagcgaaaa ttgatcctgc
     1201 taataactat tccataacgg agtacttacc tggtggtaat caatcattac agagtcctac
     1261 tgcattgttg attgataaat taacaggtga aatattcatc tcgcaacatg acggtcataa
     1321 ggtaacttct tttgatcctc taacaagaac atttactgac ttgccaataa ttaatgaatc
     1381 aggtttgcca ttcggaatgg catttgataa gtatggcaat ttatgggtag cggaacatac
     1441 aatcaacaag attgcggtga tagacaccca aaaatcaaag attagagaag taaccctgga
     1501 aaattctgca ccgtttgttc agtggcttac ttcagattca agtggtaata tatggtttgc
     1561 agagcagcga ggaaattcaa ttgggatgat agaacctagt gcaggacctg cttcagcgca
     1621 gctgacacag gaatcaaata gtgtttccaa caaaagtact tcgtcaaatt tcgagttagg
     1681 cataagttac cagaatttta tagcgccagg aattctcatt gtgattgttt tgagtgcctt
     1741 aatgtatgtt acaagtatta cccaactcaa gtataacatc gcaaatttga cagaataatt
     1801 aatttcatat ttgcatcaac attaatgaaa attcacttga ttagggatga atgcatgttt
     1861 tccgtgaaga gaccaacaaa tgatattatg aatccaagtg ttatgtggat cgaaaagatt
     1921 cggaaagcaa catgaactta taaaaagtta gatggtttgg gtcagtcttc ttctttctct
     1981 tctatttctg ttttttctac agtatttcca aactcatctt tcctttctat ttttgtttct
     2041 tttttctttt cttctcccat gtttgtatat tgcacaacat tacttaaaaa ttcaatgcac
     2101 ttccgagttt taatgtaatg aaatatccaa ctgatggaat gagtttttca agagattcca
     2161 ccagttgttt tctgaaacgt aatgggaata ctgctctaca aactatataa aagattccta
     2221 ttttagagta atttcggtct tagatcaatc tattaccaat tattgaacaa ttgtgactct
     2281 tttgaacagt agaaattaca catattgaat caaaggaaaa ttgacctagc cgagatttat
     2341 gaaaaatctc agaacgtaag accaatcttc attcgcttca aaatattgat ttaaaaa
//
LOCUS       DASPFX010000177         2194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2119588, whole genome shotgun sequence.
ACCESSION   DASPFX010000177 DASPFX010000000
VERSION     DASPFX010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2119588"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..1168)
                     /locus_tag="VD694_03715"
     CDS             complement(92..1168)
                     /locus_tag="VD694_03715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3179 domain-containing protein"
                     /protein_id="HXW11844.1"
                     /translation="MKALSLLRIRKGHLRIAVLILIIVSVSMLSLNPIATVRAEEKHT
                     VPLDQIVSGGPPPDGIPSIDSPKFVSIDEGDKFLGDSDKVVGININGDIRAYPLQILV
                     WHEIVNDIVGGIPVAVTYCPLCFTNQVFDRTVNNTILQFGTSGKLYNSNLVMYDRSSN
                     SLWSQALGEGIVGKCAGIKLEKFPFDLAYWKDWKQLYPNTKVLSKETGTARPYGADPY
                     GDYYTSPDILFPVSNKDTRLGLKEIVVGLENGEMKKAYKLSDIEKLKVINDQLNNKSV
                     TLFSLHPLMTRVFDSSVYGQTLIFQYNITNYSFTDEQTGSQWNFEGKSFNGSLKGKQL
                     LRLPFDEGYWFEWVTFHPETLVYP"
     gene            complement(1176..1673)
                     /locus_tag="VD694_03720"
     CDS             complement(1176..1673)
                     /locus_tag="VD694_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11845.1"
                     /translation="MKKGLVAGSISLTAYLVVVIITTPNLPALTALSVAIKINWIIVF
                     GLAMAVGSQVYVSNYGKNSGCGIKYKRKGILGSSSSTALSSFFSFFSLVPLGCCGSWL
                     LILSLLPSVFGSAFSAILIQYSKPLSYLGLFILIGYTAFNAIKLKGKLKNMENFKAQR
                     KISFM"
     gene            complement(1727..>2194)
                     /locus_tag="VD694_03725"
     CDS             complement(1727..>2194)
                     /locus_tag="VD694_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11846.1"
                     /translation="DTMEGVNEILNLHAKEFEQVLLNVSSGDKLIGCAALSAAFINGI
                     QAFGMDDSHTVPLLMPVLKLSYNEIISEAKIKILKSINTAGGVIESLDQLEQISGYGK
                     PLLSYHVQGAKDSKGLADLGLVEVEKGDRGKISAKLTTLGKLLVSSNTLTRTS"
BASE COUNT          687 a          449 c          357 g          701 t
ORIGIN      
        1 tgctagcgtt atcagttcca ccgcactcgg acctactaca ttctgtttaa ctctttgatt
       61 tcataaattg atgttagtgt cgaattaata cttacggata aaccaaagtt tctggatgaa
      121 aggtaaccca ttcgaaccaa taaccctcgt caaatggcaa acgcaaaagt tgttttcctt
      181 tgagagaacc attgaatgac tttccctcaa aattccattg gcttccagtt tgctcatctg
      241 taaagctata atttgtaatg ttatactgga aaattaatgt ctgtccgtag actgaagaat
      301 caaagaccct tgtcattagc ggatgcaggg aaaatagtgt tactgattta ttattaagtt
      361 ggtcattaat tactttcaat ttctcgatat ccgatagctt gtaagctttt ttcatttccc
      421 cattttcaag tccaactaca atctccttta atccaagtct ggtatcttta ttagaaactg
      481 ggaataaaat gtctggacta gtatagtaat ctccatatgg atccgcacca taaggtcgag
      541 ctgttccagt ttccttagaa agcactttgg tatttggata taattgcttc caatccttcc
      601 agtatgctaa atcgaatgga aatttttcaa gtttaatacc tgcacacttt cctacaatac
      661 cttcaccaag ggcttgactc caaagcgaat tggaagatct atcatacatt acaagattgc
      721 tattgtagag ctttcctgat gttccaaatt gcagaatagt attatttact gttctatcga
      781 atacttgatt agtgaaacaa agcggacagt atgtaacagc gacaggaata cccccaacaa
      841 tatcgttaac tatttcatgc cacaccagaa tttgaagtgg atacgcccta atatcgccat
      901 tgatgtttat accaacaacc ttatcggagt ccccaagaaa cttatctcct tcatctatcg
      961 aaacgaactt aggagagtct attgaaggaa taccgtcagg tggaggtccc ccacttacta
     1021 tctgatcaag aggaacagta tgtttctctt ccgctcttac ggttgcaatt ggattcagtg
     1081 ataacatact taccgataca ataatcaata tcaatactgc aattctcaaa tgacctttcc
     1141 taatacgtaa taaagaaaga gctttcaaaa gatattcaca taaatgatat ttttctttga
     1201 gctttaaaat tctccatatt ttttaatttc cctttcagtt tgattgcatt gaaggcagtg
     1261 tatcctatta atataaacaa tcccaaatat gataatggtt ttgaatattg aatcagaatt
     1321 gcagagaatg cactaccaaa taccgaaggt aataacgaaa gaattagtag ccaacttcca
     1381 caacaaccca atggcactag cgagaagaat gaaaaaaatg aactcaatgc agtgctgcta
     1441 gagcttccaa gaataccctt tcttttgtat tttataccac aaccagagtt tttcccataa
     1501 tttgacacat aaacttgaga gccaactgcc atcgccaaac caaatactat tatccaattt
     1561 attttgattg ctacgctcaa agccgtgagg gcaggaagat taggtgttgt gattattact
     1621 acaacaaggt aagcagttaa agaaatggat ccagcaacca accctttttt caatgcatgt
     1681 gttttgattg aagaatttga ttggatcatc atctcttacc gcatatctat gatgttctgg
     1741 taagggtatt gctacttact agtagctttc ctaaagttgt caatttagca gatatttttc
     1801 ccctatcgcc tttttctact tcaaccaaac ccaagtcagc caggccctta gaatcctttg
     1861 ctccctgaac atgatagctt aaaagaggtt taccataacc agagatctgt tctaactgat
     1921 ctaagctttc tattacacct cccgcagtat ttattgactt tagaattttt attttggctt
     1981 cagaaattat ttcgttataa cttagcttta aaactggcat taaaagggga accgtatgtg
     2041 aatcgtccat accaaaagcc tgtatcccgt ttatgaacgc agcggaaagt gcagcacaac
     2101 cgataagttt gtcaccagag ctgacattta agagaacttg ttcaaattct tttgcatgaa
     2161 ggtttagaat ttcgttaaca ccttccatag tatc
//
LOCUS       DASPFX010000178         3869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1694891, whole genome shotgun sequence.
ACCESSION   DASPFX010000178 DASPFX010000000
VERSION     DASPFX010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3869
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1694891"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..752)
                     /locus_tag="VD694_03730"
     CDS             complement(120..752)
                     /locus_tag="VD694_03730"
                     /inference="COORDINATES: protein motif:HMM:NF020227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HXW11847.1"
                     /translation="MNIIVNNAGYSLLGPLEQLDIDEIKDEFETNFFGIIKLIQSALP
                     IMRKQGYGRIINISSLAGRIGFPLSSAYVSSKFALEGLVESLRYEIQPFGIHVILIEP
                     GVVKNNFVNNMRIGRNVITSSNNNSNNGISPYVEILQKRISAFKPRFEKGLAASKVAD
                     MVLEAVTADNPKVRYLVGEDALKMMGKRKNSTDEEITRLVMNSVLGGESS"
     gene            complement(740..988)
                     /locus_tag="VD694_03735"
     CDS             complement(740..988)
                     /locus_tag="VD694_03735"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HXW11848.1"
                     /translation="MKSKQQQIALVTGSSSGIGYETSLRLAQNGIYTYASMRNLSKSG
                     EILGYAKRDNLPLKTLRLDITDEESISGNRLKRIELIL"
     gene            1327..2091
                     /gene="cbiE"
                     /locus_tag="VD694_03740"
     CDS             1327..2091
                     /gene="cbiE"
                     /locus_tag="VD694_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6y C5,15-methyltransferase
                     (decarboxylating) subunit CbiE"
                     /protein_id="HXW11849.1"
                     /translation="MQKNLFIVGVGPGSPQYLTCIAKEAIKKSKYIIGYKYTLDTVES
                     IIDRTRQEVYHITMLNQESVYQDVYNKMEDGEYCTVPFTGDANFSESEVVDRLLEIFG
                     DDTVEIIPGISSIQVASSKSKIPLDKSYVLSFHVSGDIEKKKKELINAIMDKKSVILL
                     PRPWPNDPSKNFMQSDIVKFLKLNGIDTSTLKVWVFEYLTKYNKETVFRGNASELEGM
                     DFNPLSIMIIDQNERRTYRDFDSPKKKIPKIVLDSS"
     gene            2097..3755
                     /locus_tag="VD694_03745"
     CDS             2097..3755
                     /locus_tag="VD694_03745"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HXW11850.1"
                     /translation="MTDQIKNENLFYDTFIEEETAILRAHFSNTDKNVFAIITPKQVD
                     RGALMSRYSRTDKTMRRVFLDEFIRNPNRGKEFYDRVLLEYGDDSVAELGEAQIAVEW
                     ISNIAAKKLEDRRIGLSYLEKSSRYVALDQKIRGNYKYYREELIMSSKFSDKYIQACD
                     HAFDLYSKNISPMQKYLEERESIEKFYFFDSNTRHDVSYNNLKESKDIESANRIYRST
                     IKAKSLDILRGILPASTLTNIGITGNGRAFEYLLSKIFASDLSELRNLASHLHDELDK
                     IIPSFIRRANDEKYGKLLQDYFINTRKAITRLSELHLKNIQVSRNPESINLLEFPDNF
                     EAEVKVAAAILYEFAKGQSLESIIKYVRSLKKNERINIIRMYTKFRSNRRHRPGRAFE
                     MVDYTFELLTNFGMFRDLHRHRLLTTERQLLSTKHGYDIPEEIVSLGISKEFRDCMYE
                     CSDVYEILSNRMPEQAQYVVNFAFRYPYFLKINLREACHMIELRTLPQGHADYRSVCQ
                     RLFKYIEEKNPILAEGIKFVDLNTYGLERFTTEKKTEKKKQGKN"
BASE COUNT         1309 a          679 c          666 g         1215 t
ORIGIN      
        1 agctgatctg ctggtttgaa ggtttcatca gcatcattaa ctgcttgtgc ccatagaata
       61 ttcaaagcac cgctccccat aaattaaaca aattagaacg tataattaga gtgacaaagt
      121 taggaagatt ctccacctaa aacactgttc attactaatc tagtaatttc ttcatcagtt
      181 gaattctttc tctttcccat cattttcaga gcatcttcac ctacaagata tcttactttg
      241 gggttatcag ctgtaactgc ctctaaaacc atatctgcta ctttactggc agctaatcct
      301 ttttcaaacc taggtttaaa cgcagaaatt cttttctgaa gtatttccac ataaggtgaa
      361 ataccattat tactattatt attactagat gtaataacat ttctacctat cctcatatta
      421 tttacaaaat tattttttac tactccaggt tctataagta taacatgtat tccaaatggt
      481 tgaatttcat atcttaatga ttctacaagc ccttccaagg caaacttaga actaacatag
      541 gctgatgata aagggaatcc aatcctgcca gccagcgagc ttatatttat tatccttccg
      601 tatccctgtt ttctcattat aggtaatgca ctttgaatca gttttattat accaaagaaa
      661 ttagtttcaa attcatcttt aatttcgtct atatcaagtt gctctagtgg tcccaataaa
      721 gagtatcctg cattattaac tataatatta attcgattct tttcagtcta ttgcccgaga
      781 ttgactcttc gtcagtgatg tctaagcgga gcgtctttaa cgggagattg tctctttttg
      841 catatccaag tatttctcct gatttactta gattacgcat tgaagcatat gtataaattc
      901 cattctgtgc aagacgcagg gaagtctcgt atccaattcc tgatgaactt ccagttacta
      961 gtgcaatttg ttgttgcttg cttttcacaa tatcattatt ctatttcatt cataatcaat
     1021 attttcactt tcataataaa ctagattatt cagctctatt ttttcaagtc tttcaagtgt
     1081 ttctgctggt tatcctatgc aattatgcct actggtttaa attgcattgg taatctaaga
     1141 attttcttac tactttttac gtcagcaact aacgctcaac attctccata tcaaacttgt
     1201 agaatcatta aaaatgaata catagttaac gatcaagaat cttatggaca gcccgaagta
     1261 atctgataat ctcaatgtga ttcttatata ggaataacta taggggattg ttagaagata
     1321 tatacattgc agaaaaattt gtttattgtt ggagttggac ctggttcccc acaatatttg
     1381 acatgcattg ctaaggaagc tatcaagaag tccaagtata taatcggata caaatacaca
     1441 ttagacaccg tagagagtat aattgatagg actagacagg aggtttatca tattactatg
     1501 ctgaatcaag aatctgtata tcaagatgtc tataataaaa tggaagatgg agaatattgt
     1561 actgtgcctt ttactggaga cgccaacttt tctgaatcag aagttgttga tcgattacta
     1621 gagatttttg gagatgacac tgttgagatc attcctggaa taagctctat tcaagtagct
     1681 tcttctaaat ctaagatacc attagataaa tcatatgtac tttcgtttca cgtttctggt
     1741 gatatagaaa aaaagaagaa agaattgatc aatgcaataa tggataagaa aagtgtgatt
     1801 ctgctccctc gtccttggcc caacgatcct tcaaagaatt tcatgcaatc agacattgtc
     1861 aaattcctta agcttaatgg aatagatact tccacactga aagtatgggt ctttgaatac
     1921 cttactaaat acaataaaga aactgttttc agaggaaatg ctagcgaact ggaaggaatg
     1981 gacttcaatc ccttgtcgat aatgataata gaccaaaatg aaaggcggac gtacagagat
     2041 tttgattccc ccaaaaaaaa gatacctaaa atagtacttg atagcagctg aaaaaattga
     2101 ctgatcaaat taaaaatgaa aatctgttct atgatacctt catagaggaa gaaacagcta
     2161 tactccgagc acatttttca aacactgaca agaacgtttt cgccattatt acacctaagc
     2221 aagtcgatag aggagcactg atgtctagat actctagaac agataagact atgagacgag
     2281 tttttttgga cgaatttatt cgtaatccta atcgaggtaa agaattttat gatagagtat
     2341 tgttagaata cggagatgat tccgtagctg aattaggtga agctcaaatt gcagtagagt
     2401 ggatttcaaa tattgcggcc aagaaacttg aggatcgaag gattggatta tcttatctag
     2461 agaaatcatc tcgctatgta gcattggatc agaaaatcag aggtaattac aaatattatc
     2521 gcgaggagct tattatgtct tctaaattct cagacaaata tattcaggct tgtgatcatg
     2581 catttgacct atattctaaa aatatcagtc caatgcagaa atatcttgaa gagagagagt
     2641 ctattgaaaa attctacttc tttgattcga atactagaca cgatgtatcg tacaacaatc
     2701 taaaagaatc taaggatata gagtcggcaa atagaatcta ccgatcaacc attaaggcca
     2761 aatcattgga catattaaga ggcattttgc cagcatcaac actcactaat attgggatca
     2821 ctggtaatgg cagagcattt gaatacctac tatccaagat attcgcatca gacttgagtg
     2881 aattaaggaa tttagcaagt cacctgcatg atgagcttga caagattatt ccttcattca
     2941 taagacgagc aaatgatgaa aaatatggca aactattaca agactacttc attaatacga
     3001 gaaaagccat aaccagactc tccgaacttc atttaaagaa tattcaagta agtagaaatc
     3061 ctgagagcat caatttactc gagtttcccg ataattttga agccgaagtc aaagtcgcag
     3121 cagccatact atatgaattt gctaaagggc agtcattgga aagtattatc aaatatgtac
     3181 gatctctcaa aaaaaatgag cgcataaata taatacgaat gtacactaaa tttcgatcga
     3241 atagaagaca tagaccgggt agagcattcg agatggttga ttatacattt gagcttctta
     3301 ctaattttgg catgtttcgt gatctgcata ggcatagact tcttacgacc gaaagacaat
     3361 tgctatccac caaacacggt tatgatatcc cggaggagat tgtaagttta gggatctcta
     3421 aggaatttag agattgtatg tatgaatgta gcgacgttta cgagatacta tctaatcgga
     3481 tgccagaaca ggcgcaatac gtagtaaatt ttgcatttag atacccatat tttctgaaaa
     3541 tcaacttacg cgaagcatgc catatgatcg aacttagaac tttgccccaa ggacacgcag
     3601 actatcgaag cgtttgccaa cgactcttta aatatataga agaaaaaaat cctattcttg
     3661 ctgaaggaat aaaatttgtg gatctcaata catatggatt ggagcggttt accacagaga
     3721 agaaaacaga aaaaaagaaa caaggaaaaa actaggggac ttcttttttt ggaagtcaat
     3781 agtaatatcg cttatgtctc caatatcgtt tatattcgta gtatttcgat attcccttga
     3841 aattagcaaa ggaattggga aagattgtc
//
LOCUS       DASPFX010000179         2709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1577311, whole genome shotgun sequence.
ACCESSION   DASPFX010000179 DASPFX010000000
VERSION     DASPFX010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1577311"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..584)
                     /locus_tag="VD694_03750"
     CDS             complement(189..584)
                     /locus_tag="VD694_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HXW11851.1"
                     /translation="MSEQEIPPWLREQLARLQQLQQNLQAIMMQKQQLEAESVEIEKA
                     TEELKKSEQDEAVYKSVGPLMIKTKKDDTLKELDEKKDLANTRLVVLGKQETRVKENL
                     KEVENKINDMIRMGQGQGQTGNLGTKPNT"
     gene            complement(863..1108)
                     /locus_tag="VD694_03755"
     CDS             complement(863..1108)
                     /locus_tag="VD694_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37"
                     /protein_id="HXW11852.1"
                     /translation="MVSRGKHKVARLKGLGVKYGATVRKRYGIIYRVLKKKRRCPKCG
                     SVKFDRLVLGIWACPKCNYKVAAGTYDVNFERTKNKY"
     gene            complement(1101..1925)
                     /gene="rrp42"
                     /locus_tag="VD694_03760"
     CDS             complement(1101..1925)
                     /gene="rrp42"
                     /locus_tag="VD694_03760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex protein Rrp42"
                     /protein_id="HXW11853.1"
                     /translation="MSLSKKSTVIVENLRKKQMRESISTGKRLDGRSLDEVRPIEIEL
                     DVIKKASGSAWVKLGNTEVVAGVKVETGEPFEGLENSGALIITAEVLPIASPHIEPGP
                     PDEETIELARVVDRGVRESEMLDLSKLVLVPGKIVYTIFVDCSVINVDGNLLDATSYA
                     AVSALASCKLPVFEIKDNNVVDTGKTQEPPITTLPVSVTTVKIGDYLISDPSTEEEAC
                     MDARLTITTNSKGSIVAMQKGLKGSFSIEDVKSIADKAIVKGEEIRAKIKGLINIG"
     gene            complement(1925..2659)
                     /gene="rrp41"
                     /locus_tag="VD694_03765"
     CDS             complement(1925..2659)
                     /gene="rrp41"
                     /locus_tag="VD694_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HXW11854.1"
                     /translation="MVQSRSLIDESGKRTDGRVIDELREVKINVGIVKNADGSALIEF
                     GKNKIIAAVYGPREVHPKHMALSDRCVVRCRYHMSPFSTDTRKSPAPSRRETEISKVI
                     REALEPALILEDYPRAAIDVFIEVLQADGGSRCAGISAASVALADAGINMRDMVSACA
                     AGKVDDKIVIDINDTEDKEGGADMPVAYMPNLKKITLLQLDGELNPNEFNTCLDEAVR
                     GCLKVYEIQRSSLMEKYFGDEKEMKE"
BASE COUNT          744 a          600 c          398 g          967 t
ORIGIN      
        1 attacaactg caaaatccga taaagtatca tgacaaaaac atatttcgta tgtaaaaaat
       61 actttctaaa aattacggaa tgaatgatac tctcatcgag atcacaattt ttatcaaagc
      121 atgtgttact taagttagta atacaagtca aaatggatcg aatgatcaat caaattaaaa
      181 agtaataatt atgtgtttgg ttttgttccc aagtttccag tttgaccttg accttgtccc
      241 atgcggatca tatcatttat cttgttctct acttccttca aattttcttt tactcgcgtt
      301 tcctgttttc caagaactac taaccttgta ttagcaagat ctttcttttc atccaattcc
      361 tttaacgtgt catctttttt tgtctttatc attagtggac cgacgctttt gtatactgcc
      421 tcgtcctgtt ctgatttttt gagttcctcg gtagcctttt ctatttctac agattctgct
      481 tctagttgtt gtttttgcat cataattgct tgcaaatttt gttgcaattg ttgcagtcta
      541 gccagctgct ctctcaacca tggtggaatt tcttgttcgc tcatttctaa ttacttgact
      601 ttaccatcat aaatctatag cgttttataa atttagagac aaataagata aactcaataa
      661 tctgatgtac gtgttaatta ttgcccgcat tgactgcaga tcatttgtag tgatgtcaat
      721 acaaattgtc ccattgtctg aaataatact tattttttca gttgaagtta gatatttggt
      781 ctcaggttgt agtgcactgc tgatagtatg tccgacatta gaagaaattt ctgaagaaag
      841 attatctaga gtaattttga tcttagtatt tattctttgt tctttcaaag tttacatcat
      901 atgttccagc agcaactttg taattgcatt ttggacaagc ccaaattcct agtactagcc
      961 tatcaaactt tacagaaccg cacttagggc atcttctttt ctttttcaat acccggtaaa
     1021 tgattccgta tcgtttccta actgtagcgc catattttac ccctaatccc ttaagacggg
     1081 ctactttgtg cttacctcta ctaaccaata tttatcaatc cttttatttt tgctctaatt
     1141 tcttcgccct taactatagc tttatcggca atgcttttca catcttcaat tgaaaaggat
     1201 cccttaagtc ccttttgcat agctacaatt gagccttttg aattcgtagt aattgtaagt
     1261 cgagcatcca tgcaagcttc ttcctcagta cttggatcag agatcaaata atctccaatc
     1321 ttgaccgttg tgacagatac aggtaaagta gtaattggag gttcttgtgt ttttccggta
     1381 tctacaacat tgttatcttt aatttcaaag acgggcaatt tacagctcgc taatgcagat
     1441 actgcagcat aagatgttgc atctagaagg ttaccatcta cattaatgac actgcaatcc
     1501 acaaaaattg tatacacaat ttttccaggc accaaaacca gtttactcaa atccaacatc
     1561 tcagattctc ttacacctct atcaaccact cttgcaagtt cgatggtttc ttcatcagga
     1621 ggccctggtt caatatgcgg agatgcaatc gggagtactt cagcagtaat tatcaaagca
     1681 ccgctatttt ctaatccctc aaaaggttca cctgtttcta cttttactcc tgctacaacc
     1741 tcagtgttac ctaacttcac ccaagcagat ccgcttgcct tcttaataac gtctaattca
     1801 atttcaatag gtcttacttc gtctaacgat cttccatcca gtcttttacc tgttgaaatt
     1861 gattctcgca tctgcttctt gcgaaggttt tcaacaatta ctgtagattt ttttgacaga
     1921 ctcattattc tttcatttcc ttttcatcgc caaagtactt ttccattaaa gaggaacgtt
     1981 gtatttcata taccttcaag caaccacgta cagcctcatc caaacaagta ttaaattcgt
     2041 ttggatttaa ttctccatca agttgcaaga gtgttatttt ctttagattt ggcatatatg
     2101 caacaggcat atcagctcct ccttccttat cctcagtatc attaatatca atcactatct
     2161 tatcatcgac ttttcctgca gcacatgctg ataccatatc acgcatgttt attcccgcat
     2221 ctgcaagcgc aacagaggca gctgagatac cagcacacct cgagccaccg tcagcttgaa
     2281 ggacttctat aaatacgtca attgcagcac gcggataatc ctcaagtatt agagcaggct
     2341 caagagcttc tcgaatcacc ttagatattt cagtctccct tctagaagga gctggactct
     2401 tacgagtatc agttgaaaac ggcgacatat ggtatctgca tcgcactaca caccgatctg
     2461 ataatgccat atgttttgga tgaacttccc gtggaccata gactgctgca ataattttgt
     2521 ttttaccaaa ttctatcaac gcagaaccgt ctgcattctt tacaataccc acgttaattt
     2581 ttacttccct taattcatca atgactctac catcggttcg ttttccactt tcgtctatta
     2641 gacttctact ttgtaccatt tgaatcaatc atccccattt ctttatcatt attgtttgaa
     2701 ttaatttca
//
LOCUS       DASPFX010000180         6149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1057547, whole genome shotgun sequence.
ACCESSION   DASPFX010000180 DASPFX010000000
VERSION     DASPFX010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1057547"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            395..787
                     /locus_tag="VD694_03770"
     CDS             395..787
                     /locus_tag="VD694_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11855.1"
                     /translation="MGLTIVIDVNRTFRGLIYGSAASTLIAGLLHLALVPMFLGQMTT
                     EVTVFFLASGLAQIFWILPTVRKWIMPWYYIGIGGTIVLIVLWIIYIPGSGYPVDLMS
                     AAIVSFQIAFVILSLIIIKKSKEESIKS"
     gene            complement(929..1309)
                     /locus_tag="VD694_03775"
     CDS             complement(929..1309)
                     /locus_tag="VD694_03775"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW11856.1"
                     /translation="MDFKNTKAFSSFSVKDLEETKKFYGQTLGLEIAETDEGLMLQIK
                     GGNDVFIYPKPDHTPATFTVLNFVVDEVDKAVDELTKMGVRFQLYDKGELKTDDRGVF
                     QGKPKIAWFKDPAGNFLSILENDN"
     gene            complement(2166..2657)
                     /locus_tag="VD694_03780"
     CDS             complement(2166..2657)
                     /locus_tag="VD694_03780"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW11857.1"
                     /translation="MQKISPCLWFDDNAEDAVKFYASIFKDAKVGNVMRYGKEGYEIH
                     KKKEGSVMTIDFEIEGQKFLALNGGPTFKFNEAISFQIYCDTQEEIDYYWGKLTEGGD
                     KNAQVCGWLKDKFGVSWQVVPVALIKMLQDKDSKKFERVMKAMLQMRKLDIDTLTKAY
                     QEE"
     gene            complement(2823..4616)
                     /locus_tag="VD694_03785"
     CDS             complement(2823..4616)
                     /locus_tag="VD694_03785"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HXW11858.1"
                     /translation="MALGLENSVDKKINYYLNNSCIIGTIGSPSSTIELSLDILESSV
                     TRQLVGELAIFKYLQDSKNHYAIGQIIEIALKNFLLEDPTIKSVARKRGSVNPISGIQ
                     DVHIGKLLCSAIFTSSDDLVEPSLLGTVPPTGTYVYQVDDNILSTILEKQKNSLLYLG
                     NSYGSKTKLPMWFKHFDYGENGAGEAYHLGIFGITGSGKSTLAKMILTAYSKFRQMGL
                     LVLDPVGEFSKSFAIDNSSNTDREHMNSDSSFSIKKIMNFLDKQVVSINVRNLVLDRW
                     SLFEEILLESQIFHQLTIKGPNKGFAVDALIPKLRNKTTLTKLIKRESFDLFMNELRK
                     EDIQLLIFSTPEPRKRLNNLVSSMDERNLDNLFSQYWVPICSLFEDRPDAITIDELLE
                     KFTWKMKPLIVVDLSEQTAHNMELRYWNETIQSLILKRLLKGLVSLGEKTWQKNTSLN
                     TLVVLDEAHRYARKDEFSDSNLEQLRLTLLDAVRTTRKYGLGWLFISTSLSSIHRDIL
                     QQLRIMFFGFGLSLGNDLVTLRELVSDEKAIDLYRTFTDPASSFNSKSRKYSFMTQGP
                     VSPLSFSGAPFFFNAFNPNSFITENKLDIKS"
     gene            complement(4622..5689)
                     /locus_tag="VD694_03790"
     CDS             complement(4622..5689)
                     /locus_tag="VD694_03790"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HXW11859.1"
                     /translation="MLQKTSEIGGILQSSIHDINRKRQKFRLQLEQTGLLDNDNRFSN
                     IDNIISGGVDGAYAVDRLLGTDLLFAAAVAVNGINEENGKRIMPSHDVFVNPEKHNPE
                     NMIAARAIMVEMEIKLAANAPYDIVYLDGSLTTALIHMYKAINFIETLNTKSSEKIKE
                     DFKDFLISYKKILEFKETDKYYLGIPKYTSRNDIGKNLHWPENYDDRAILTMILDPGE
                     FTRPKLFTSEEGWHIRLPYKDVELQLLMQDVISGIKNLSVIYYKPHSWCPALRIEVPL
                     AIVRDERKLNTILYNIKNQCQTPSMMEPFPLYMADRIAKHMAPAIPAYKQIIMKQMTE
                     LADNNEKDIFFMMHSYRTEGG"
BASE COUNT         1904 a         1112 c          985 g         2148 t
ORIGIN      
        1 agtatgacgc aaagaaatga tacctctttt gatataatat atgttacttt gatacaaatc
       61 ggctgtttta caagtgcaag tacggatgga tcccaaatat actggaaacc atactgaaag
      121 ccaattagaa gacaaggctc atttcccagt atgacaggaa acggcacact tgctcatact
      181 gtttgtgcag tagaatagaa aatcgtgccc atcgttccat tgaggaaaat aatcaaccta
      241 tgaaggcttg gattattggg aattaatgga ataggggatt cagaagataa agccaacaga
      301 atgttctagc cataatcact caacatcgcg agaatagatt gacgcactca taaacaagaa
      361 ttattccaat cactttatat cgatatagta atttgtggga ttaacaattg taatagatgt
      421 gaataggaca tttagaggac taatttatgg atctgctgca tctacgctaa tagcaggact
      481 attacatttg gcacttgttc caatgtttct tggtcaaatg acaaccgagg taacggtatt
      541 ctttttagct tctggtcttg cccagatttt ctggattttg cccaccgtta ggaaatggat
      601 aatgccctgg tactatattg gtataggtgg aacgatagtc ttgatcgtgt tatggataat
      661 atacatccca ggaagcggat atccagtaga tttgatgagt gctgccatag tatctttcca
      721 aatcgccttc gtaattttga gtttaataat aatcaagaaa agtaaagaag aatcaatcaa
      781 gtcttgaatg aaatgacatc tttactctat tttggaacaa aagttgattg caaataggag
      841 aggaatctca atttcaatct taatgaaagc actatactaa atttatttga ataataaaat
      901 agtgaaattg agagaattag atattacttt aattatcatt ttcaaggatg gacaagaaat
      961 ttccggcagg atctttaaac caagctatct ttggtttgcc ctggaaaact cctctgtcat
     1021 ccgtttttag ttcgccttta tcgtataatt gaaaacgaac tcccatctta gtgagttcat
     1081 ctactgcttt atcaacctca tcaactacga aattaagtac ggtaaaagta gcaggagtat
     1141 gatcgggttt aggataaatg aatacatcat tacctccctt aatttgcaac atcagcccct
     1201 cgtctgtttc tgctatctca agtcccaaag tttgtccata aaactttttt gtctcctcta
     1261 aatccttaac tgaaaaactg gaaaaagctt ttgtattttt aaaatccata tacacagatt
     1321 agctaaaata attattaaag gtatagaatt ttgcattgat atgcgcagca ttagttcatt
     1381 ggtgataatt gatcgatcta gtagtactga actcgtagat attgaaatat agattttatc
     1441 atacccctat tgcattctaa tagttttaaa ttgagagaac atattagatt tcctatagag
     1501 gagaaacaat ttatcattgt atgatgcaag aacttgatgt agctttgata gcttgattag
     1561 tatcactgga ctgactattg gctgaatttt acattgaggg attaaatcta caacatacca
     1621 tgtcagtgca atagcaatat ttgcaatttc catattgtct tttaggcttt aaagaatgaa
     1681 atagtgtacg ctattggttg ttcaaatagt acgaactcta atttgtagct agtattgttc
     1741 taatcctgaa gattgcttac caaaattgtc tgcgggtttg atctttgcaa atcataacat
     1801 tctggacatg tcatgctccc gaaccagtac tttatagaac ttgttttctt ttcacataat
     1861 tcacatcttg caaagttaaa catacctgat attagatatg atcttatata aaacttttct
     1921 agtagattta cattgatgga actcgaaatt cttcaactag agttcaactt tggatatgat
     1981 tggcttgaat taccatatta tgtctttatt taccatttat tcagtgcaac aagttggtca
     2041 aatacaaaaa tcaaagcatc aaatcccgcc cttatacgcg ggtttatctg aactagtttc
     2101 tttcgacttc ctgtctagaa caatttatct tggataagtg agtcgtacaa ggagtcgtac
     2161 aaggactatt cttcttgata tgcttttgtc agggtgtcga tatcaagctt gcgcatctgt
     2221 agcattgctt tcatgactct ttcaaatttc tttgaatctt tatcctgcag catctttatc
     2281 aaagctactg gaacaacttg ccatgatact ccaaatttgt cctttaacca tccacatacc
     2341 tgcgcatttt tatcaccacc ctcagtaagt ttaccccagt aataatcaat ttcttcttgc
     2401 gtatcgcaat agatctgaaa tgagatagcc tcgttaaact tgaatgttgg tcctccattc
     2461 agagctaaaa atttttgacc ctctatttca aaatcaattg tcattacact gccttctttt
     2521 ttcttatgaa tctcgtatcc ttcttttcca tatctcataa cgttacctac tttagcatct
     2581 ttaaatattg aagcataaaa tttcactgcg tcctctgcat tatcatcaaa ccacaagcat
     2641 ggactaattt tttgcattcc aatgttatta cccgctcata ttataaatgc atgcactaaa
     2701 taggataatc taactttact tcaattgact ggtgtctaac atatatttga aaatactagt
     2761 tcaatcagct tgttctttct atataacaaa tatagaaatt atacatttcg tacttgacca
     2821 tttcatgact ttatatctaa tttgttttca gttatgaaag aattaggatt gaatgcattg
     2881 aagaaaaatg gagctcccga aaacgataat ggcgaaactg gtccttgggt catgaaggag
     2941 tattttctgc tctttgaatt aaatgagctt gctggatctg taaatgtcct atacaaatcg
     3001 atagcttttt catccgatac aagctcacgt aatgtaacta gatcgttacc tagtgagagt
     3061 ccaaatccaa agaacatgat tcgcaattgt tgaagtatat ccctgtggat actagatagt
     3121 gatgtactta taaaaagcca ccccaatccg tatttcctag tggtcctgac cgcatcaagt
     3181 aacgttaatc tcaattgttc aagattggaa tcgctgaatt catctttcct tgcgtatctg
     3241 tgtgcttcgt ccaaaactac tagagtgttt agggaggtat ttttctgcca agttttttca
     3301 ccgaggctta ccagaccctt aagcaatctt tttagtatta atgattgaat tgtttcattc
     3361 caatatctta gctccatgtt gtgagctgtt tgttcagaaa gatccacaac aataagtggt
     3421 ttcattttcc aagtgaactt ctctagaagc tcatcaattg ttatagcatc aggtctatcc
     3481 tcaaataaac tacaaattgg gacccaatat tgtgaaaata aattatccaa atttctttca
     3541 tccatgctag acaccaggtt attaagtctc tttcttggtt ctggagttga gaatatgaga
     3601 agttgaatat cttccttccg caattcattc ataaaaagat cgaatgattc cctttttatc
     3661 aatttggtca atgtagtttt gtttctaagc ttaggtatca atgcatcgac agcaaaccct
     3721 ttgtttggac ctttgattgt taactgatga aagatttgtg attcgagtaa gatttcttca
     3781 aacaatgacc acctatctag aacaagattt ctaacattta ttgatacgac ctgtttatcg
     3841 agaaaattca ttattttttt tatgctgaaa ctagaatcag aattcatatg ctctctgtct
     3901 gtgttactac tattatcaat tgcaaaactt ttagaaaact ctccaacagg atctaataca
     3961 agcaaaccca tttgacggaa ttttgaatat gcggtcagaa tcatttttgc aagtgttgat
     4021 tttccggatc cagttattcc aaaaattcca agatggtagg cctctcccgc accattttca
     4081 ccgtaatcaa aatgcttgaa ccacattggc aatttagttt tggaaccata actatttcct
     4141 aaatagagca agctattttt ttgcttttct aaaatggtac ttaaaatatt atcatctacc
     4201 tgataaacat acgttcctgt tggtggtact gtacctaaca aacttggttc gactaaatca
     4261 tcagaacttg tgaatattgc gctacaaagt agcttgccta tatgaacatc ctgtatacca
     4321 ctaataggat taacagatcc tctttttctg gctacagact ttattgtggg atcctctagt
     4381 aaaaagttct taagggcaat ttctataatt tgaccaattg cataatgatt ctttgaatcc
     4441 tgtaaatatt taaagatagc cagttctcca acaagttgtc ttgtaactga ggattccaat
     4501 atgtcaagtg aaagttcaat tgttgaagat ggtgagccaa ttgttcctat aatgcaacta
     4561 ttatttagat aataattaat tttcttatca accgaatttt ccaaacctag tgccatagcg
     4621 actatccacc ttcagttctg tatgagtgca tcataaaaaa tatatctttt tcattgttat
     4681 ctgctagttc tgtcatttgt ttcattatga tttgcttgta ggcaggaata gctggagcca
     4741 tatgcttcgc tatcctatca gccatataaa gtggaaatgg ttccatcatg gaaggggtct
     4801 ggcattgatt ttttatgtta tacaaaatag tatttaattt cctttcatcg cgaacgattg
     4861 ccaatggcac ttcaatcctt aatgcaggac accaagaatg tggtttgtag tatataactg
     4921 aaagattttt tattcccgaa attacatctt gcatcaaaag ttgtaattca acgtccttgt
     4981 atggcaatct tatatgccat ccttcttcgc ttgtaaataa ttttggacgt gtaaattctc
     5041 caggatctaa tatcatagtg agaattgctc tatcatcata attttcaggc cagtgaagat
     5101 tcttacctat gtcgttcctt gaagtatact ttggtattcc tagatagtat ttatctgtct
     5161 ctttaaattc caaaattttc ttataagaaa ttaaaaaatc tttaaaatct tccttgattt
     5221 tttcagagga ttttgtattg agagtttcaa tgaaattgat agccttgtac atatgaatta
     5281 gtgctgttgt aagagagcca tcaagataca ctatatcata tggagcattt gcagctaatt
     5341 tgatttccat ttctaccatg attgctcttg ctgctatcat attctcagga ttatgctttt
     5401 caggattaac aaatacatca tgacttggca tgatgcgctt tccattttct tcgttaatcc
     5461 catttacagc cactgctgca gcaaaaagta gatccgtgcc taggagacga tctactgcat
     5521 atgcaccgtc cacgccacct gaaattatat tgtcaatatt gctaaatcta ttatcattat
     5581 ccaatagtcc tgtttgttca agttgcagtc ggaatttctg tctttttcga ttaatgtcat
     5641 gaatcgagct ttgtaatatt cccccaattt cactagtttt ctgtaacatt tgttccacta
     5701 acgaggcagg tatctcgaga aaagattgtg aatcgatttc atacataagc atttaccaaa
     5761 taatcatcca aacttgaata aagatcgtag tattgaatgg atttcagaaa tggaattgag
     5821 ttaatcttat tctgcacttt cacactcatc tatggcatat aatcagaatg aacttagctt
     5881 tatgcctttc taattaaact atagaaactg ttctggccta atctaattcc caattgtatt
     5941 aatagaacat gctatcatat ttgtaaactc atcagtttga caaatccaac caaaattgtc
     6001 ttttcgcata aactttatta tcttttagac tcaatttgaa tagtaatgag gtttaaacta
     6061 acaataaaca aagtatgtaa aaatggctta tttgtagcaa gtattttttt gatttatatt
     6121 tcattagttg actttacaaa tcaggataa
//
LOCUS       DASPFX010000181         4876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1308831, whole genome shotgun sequence.
ACCESSION   DASPFX010000181 DASPFX010000000
VERSION     DASPFX010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1308831"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(361..1284)
                     /locus_tag="VD694_03795"
     CDS             complement(361..1284)
                     /locus_tag="VD694_03795"
                     /inference="COORDINATES: protein motif:HMM:NF016330.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HXW11860.1"
                     /translation="MSWEYWEYQQSKPRRVKNGGIKARSKKGNIGSTWWSKKWLKILE
                     SYGSQWSSNRLKRGISYARMGQIINFEISKGSISASVQGSRPKPYKVIISVKMLENKQ
                     WKKAIESMSSQVIYAAKLLAGEMPENIEKAFIGSSSKLFPSKAEFKAYCTCPDSANPC
                     KHIAAVCYIIAEEFDRNPFMIFELRGKSREDILTSLRKARNGGGKQRCYTKEEPSSHI
                     YEKNEKSDNNSNTNDPKPLQNFVYSFWHAGKNYKLLDVSIEPSRVNAAVIKRLGEPSF
                     WRLQKNFVDIMEDIYGKVSKIALKEAYAPLS"
     gene            complement(1451..4663)
                     /locus_tag="VD694_03800"
     CDS             complement(1451..4663)
                     /locus_tag="VD694_03800"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HXW11861.1"
                     /translation="MIVLHGIWGRAEDSKWYFYLWGETSVDDNDKASIIKQHFSFRHP
                     FNASCEELRKVAKVASSFSTIEVILPTFKRQKKPQPSTTLLGQMEYRNQLLLNKWVVD
                     CLVIDSADAIIYLKNIDEHLNNHNISYGDDLVYWSEVAKFSLDLIIRQRFVPSVKFSE
                     HLLHDDNRRKYLATWIPIITDIKDSQRLKLLEDSMPPVCRVLNSRILPRQLLLNVLES
                     LIDGSIRRFLQYGQEKIINEIVTKNMSDDYHAVDIEWLKALLSTDMEINSSEKSIENL
                     VIELNRWSEAVSSHGEGRKFITCFRLEPPELDGGNGDNNNDRYNRNRTKWKLNYLLQA
                     VDDPSLVIEADKIWKGFKGKKGKNEGIGKYLDRRFQHPQDRLLTDLAVASRLFKPIER
                     SLKLPAPSGCLIDVNEANSFLTESVWLLRESGYVILLPSWWNDKQSSLGVTVTLKLKS
                     KSKSLSGTTGMNLFGLNSLLDFDWRFAVGEDITITKAEFMKLVSLKSPIVNFRGQWIN
                     LRREYVESALKLLEQYKKNGGMPLGEVLSLMINRGRENFSQFKFEYHEKEIEEILSKL
                     TSSDISLLDVLHQPDGFNGVLRDYQIRGYSWLHYLTCHGIGACLADDMGLGKTIQFIA
                     LLLSRRREHDTKPWILICPTSLVGNWIHEIKKFSPSVRLMVHHGASRLEGENFVHDAE
                     NHDLVISTYSLIQRDIETLSKKEWGVIALDEAQNIKNHYTKQSQTIKSLRSDMRIALT
                     GTPIENRLSELWSIMDFLNSGYLYGIEEFRHRFSIPIERYRDTTKQTELQRLVKPFIL
                     RRVKTDPSIISDLPQKMEMKVYCSLTQEQATLYEVVVEQMMQNIEGSKGMKRKGMVLS
                     ALTRLKQICDHPSLYLADESANLDSRSGKLSRLKEMLEEIIEIGENSLVFTQYAGMGL
                     MIKKYIQSSLGCETFFLHGSIPRKERDSMIKRFQEGSRTSDNKKSSRVFVLSIKAGGV
                     GLNLTAANHVFHYDRWWNPAVENQATDRAYRIGQNKTVQIHKFISTGTLEEKIDEMIE
                     RKKGLAEGIIETGEKWITQMSNEQLRQIFTLRRDAVVKQK"
BASE COUNT         1427 a          992 c          764 g         1693 t
ORIGIN      
        1 atattatgtt accgaaccct gctataatga gaaatcgaag ccctccgagc ccgtatacta
       61 agggttcaat aacatttttt aatatataat tataaggata aatgaaaata taattttaag
      121 gtctaatttt ggaatttgga aatatctaaa tagccaacca aaagataaaa acaaaaaagc
      181 aataaccaaa tataaaatat acaacacaag gtatacactt agatggtcga ttttcaatct
      241 actagtagca atgttcacaa tgttcaataa ttaattgtaa aaaataatta aattagtgtt
      301 gaagagcttt tttatgcatt attttcaaat attaatagaa cttttactaa ttgatacata
      361 ttatgataga ggagcatatg cttccttcaa tgctatctta ctcactttac cgtaaatgtc
      421 ttccataata tcgacaaagt ttttctggag tctccagaaa gatggttctc caagacgttt
      481 tatcacagca gcattaactc gagaaggttc tatactgaca tcgagaagtt tgtaattctt
      541 gccagcatgc cagaacgaat agacaaagtt ttgaagtggt ttgggatcat ttgtattcga
      601 attgttgtca gatttttcat ttttctcata tatatgggat gatggttctt ctttagtata
      661 gcatcgttgt ttacctccac catttctggc ttttcttaaa gacgtcagaa tatcttctcg
      721 gcttttgcct ctgagctcaa agatcataaa cgggttccta tcaaactcct ctgcgattat
      781 atagcatact gctgcaatgt gtttacatgg attagcggaa tcaggacatg tacaatatgc
      841 tttaaattct gctttagatg gaaaaagttt agatgaagat cctataaatg ctttttctat
      901 attttcaggc atttctcctg caagtagctt tgcagcatat attacttggc ttgacataga
      961 ttctatagct tttttccatt gcttattttc aagcattttt acagaaataa tgactttata
     1021 tggttttggt cttgaaccct gaacactcgc acttatgcta cctttgctta tctcaaagtt
     1081 aatgatctga cccatccttg cataactaat acctcttttc aatctgttgc tactccactg
     1141 gctaccatat gactcgagta ttttcaacca cttcttagac caccatgtac tacctatatt
     1201 tcccttcttg cttctggcct tgataccacc atttttgacc cttcttggtt ttgactgttg
     1261 atattcccag tattcccaac tcatctaaag ccagcctcca taaataatat agtcttaata
     1321 cttcttggaa ttatgtaatt gttgtagtct tcaaatatat ttgaggatcg aaataacgat
     1381 gataatgaca acagtaaaaa agtaattgtc tgtacccaca tttccataat cataattatc
     1441 ataagcacag tcacttttgc ttcactactg catctcttct cagggtaaag atctgtctaa
     1501 gctgttcgtt gctcatctgt gtaatccatt tttctccagt ttcaattatc ccctcagcca
     1561 gacctttttt tctctcgatc atttcatcaa tcttttcttc gagtgttcct gtagagataa
     1621 acttgtgtat ctgaactgtt ttattctgtc ctatcctata tgctctatct gtcgcttggt
     1681 tttcaactgc aggattccac cacctatcat agtgaaatac atggtttgcc gctgttagat
     1741 ttagccctac tccaccagcc ttgatagaaa gtacaaagac tctagatgat tttttattgt
     1801 cactagtcct actaccttcc tggaaccttt ttatcatcga atctctttct tttcttggta
     1861 tgctcccatg taggaaaaat gtctcacaac ctagagacga ttgtatatat tttttaatca
     1921 tcagtcccat acctgcatac tgagtgaaga caagactgtt ctcgccaatc tctattattt
     1981 cttctaacat ctccttgaga cgagagagtt tccctgatcg gctatccaaa ttggcacttt
     2041 cgtcagcaag ataaagtgac ggatggtcac atatctgctt cagtctagtg agagcgctta
     2101 gaaccattcc cttccttttc attcctttac taccttctat gttctgcatc atttgctcta
     2161 ccacaacttc atacagggta gcctgttcct gtgtcaggct acagtatacc ttcatttcca
     2221 tcttctgtgg aagatcactg ataatggatg ggtcagtctt gacccttcta agtatgaatg
     2281 gttttaccag ccgctgaagc tctgtctgtt tagtggtatc tctgtatctt tctataggaa
     2341 ttgagaatct atgtctgaat tcttcgattc cataaaggta tccagagtta agaaaatcca
     2401 ttattgacca cagctcagat agtcggttct caataggagt tcctgttagt gcaattctca
     2461 tatcggatct cagactttta attgtctgtg attgtttggt ataatgattc tttatattct
     2521 gtgcttcgtc taatgcaata actccccatt ctttctttga aagagtctct atatctcttt
     2581 gaatcaatga ataggtgctt atcaccaaat catggttttc agcatcatga acaaaatttt
     2641 ccccttctag cctgcttgca ccatgatgaa ccatcagcct aactgatgga gagaattttt
     2701 taatttcatg tatccaattt cctaccaatg aagttgggca aatgagaatc catggttttg
     2761 tatcatgctc tctacggcgc gatagaagaa gtgctatgaa ctggattgtt ttcccaagcc
     2821 ccatatcgtc tgcgagacac gcaccaatac catggcatgt caggtaatga agccatgagt
     2881 agcccctaat ctgatagtca cgcaaaaccc cgttaaatcc atctggttga tgaagaacat
     2941 ctaataatga tatatcactg ctagtcagtt tagaaagaat ctcttcgatc tctttttcat
     3001 gatattcaaa tttgaactga gaaaagtttt ccctgccgcg gttaatcata agtgataata
     3061 cttctcccaa tggcatacct ccattcttct tgtattgttc aaggagtttt aaagcggatt
     3121 caacatattc tcttctcagg tttatccact gtcctctaaa gtttacaata ggacttttta
     3181 gagatacaag cttcatgaat tcagctttgg taatagttat atcttctcca acagcaaacc
     3241 tccagtcaaa atccaaaaga gaattcaaac caaaaaggtt catacctgtt gttcctgaaa
     3301 gagattttga ttttgatttc aatttcaggg ttacagtaac tcctagactg ctctgcttgt
     3361 cattccacca agaaggcaga aggattacat agccactttc ccttaaaagc catactgact
     3421 ctgtcaagaa tgaatttgct tcattaacat caattagaca accagatggt gcaggtaatt
     3481 ttagacttct ttcaataggt ttgaagaggc gggaagcaac ggccagatct gtaagcaacc
     3541 tatcctgtgg atgttgaaac ctccggtcaa ggtattttcc tatgccttca tttttacctt
     3601 tcttaccttt gaaacccttc caaatcttat ctgcttcaat aacaagactt ggatcatcaa
     3661 ctgcttgcaa aagatagttt aatttccatt tggtcctatt cctgttgtat cgatcattgt
     3721 tattatcacc attacctcca tctaattctg gaggctccag tctaaaacat gttataaact
     3781 ttcggccttc tccatgagaa gaaacggctt ctgaccacct atttaattct atgacaagat
     3841 tctcaatact cttttcagat gaattaatct ccatatcagt ggacaagaga gcttttaacc
     3901 actctatgtc aacagcgtga taatcatcag acatattttt agtcacaatt tcattaataa
     3961 ttttctcttg tccatattgt agaaatctcc ttatcgatcc atcgatcaaa ctctccaaaa
     4021 cattgagaag taactgccgt ggaagaattc tgctattcaa gacacggcaa actggaggca
     4081 tggagtcttc tagaagcttc aacctttggg agtctttgat atcagtgatt attggaatcc
     4141 atgtagccaa gtattttctt ctattatcat catgcaatag gtgttctgaa aatttaacac
     4201 tagggacgaa acgctgtctt ataattaaat caagtgagaa ttttgccacc tcactccagt
     4261 agaccaggtc atccccatac gaaatattat gattattgag atgttcatca atattcttta
     4321 gatatattat ggcatctgca gaatcgatta caaggcagtc aactacccat ttatttaaca
     4381 gtaattggtt cctatattcc atttgaccta acaaagtagt tgaaggctga ggctttttct
     4441 gtctcttaaa agttggcaaa atcacctcaa tagtactgaa agatgatgct acttttgcga
     4501 ctttgcgcag ttcttcgcag gatgcattga atggatgcct gaaagagaag tgttgtttta
     4561 ttatcgatgc tttatcatta tcatcaacag aggtttctcc ccataaataa aaataccatt
     4621 tagaatcttc tgctcttccc catataccat gtaaaactat cacttcgtct cgttaattaa
     4681 gatatattta tttccttcat ataattggtt aatgaaataa ttcgcagatt gtgaattatt
     4741 atatctagag aaacaaataa ttgtgttcac ttattaacat ataataaatg atattcaatc
     4801 tgtataatgg ataataatta tcaaaagatt cagttctatc tttgaaatat caattgattc
     4861 tttaatcaaa attttg
//
LOCUS       DASPFX010000182         2964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_496112, whole genome shotgun sequence.
ACCESSION   DASPFX010000182 DASPFX010000000
VERSION     DASPFX010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2964
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496112"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /gene="pdxT"
                     /locus_tag="VD694_03805"
     CDS             complement(<1..451)
                     /gene="pdxT"
                     /locus_tag="VD694_03805"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR03800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HXW11862.1"
                     /translation="MRQDGPVIGVLGIQGDVEENVSQTRIAFNCLGKKGDVRIVRHSE
                     DILGISGLILPGGESTVISNMVTVNRELFRKIADVISKGMPVLGTCAGMIILSTRTHD
                     RVIGQTNQKLLSLLNIVVERNAFGRQRDSFEAEMEIPIIGKRPFKGIF"
     gene            complement(448..1419)
                     /gene="pdxS"
                     /locus_tag="VD694_03810"
     CDS             complement(448..1419)
                     /gene="pdxS"
                     /locus_tag="VD694_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HXW11863.1"
                     /translation="MTISLVPSEIIEQRNIQRRIIGSHSPITTGTTLVKRGFTHMQKH
                     GVIMDVTNIEQAQIAEDAGAVAVMVLDKLPFDVRLAGGVARTASVKVVQEIMDAVTIP
                     IMAKCRIGHLGEAQILEEIGVDTIDESEVLTPADEDNHLWKWSFKVPFVNGAKNLGEA
                     LRRIEEGCSMIRTKGEPGTGNVAEAVSHIKAVNNDIRRLNSIVDDPQELIKASRQLQS
                     ALPLVEETARLGKLPVVNFAAGGISTPADAALLMSLGCDGVFVGSGIFKSDDASQRAQ
                     AIVLATTYFDDPTTVLESQKMVDEKKSMLGLDTQNLALRMQERGPSV"
     gene            1699..1866
                     /locus_tag="VD694_03815"
     CDS             1699..1866
                     /locus_tag="VD694_03815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11864.1"
                     /translation="MSEDGNHVGGVDCFKDDGGCKEVKEEFGSNVNKVSRESCESSSG
                     GEKCKQEKIEK"
     gene            1987..2130
                     /locus_tag="VD694_03820"
     CDS             1987..2130
                     /locus_tag="VD694_03820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11865.1"
                     /translation="MVDETKVDPPPCDICGNALEACLCVCPYCGERDKCECCLYDAAT
                     GGG"
     gene            2127..>2964
                     /locus_tag="VD694_03825"
     CDS             2127..>2964
                     /locus_tag="VD694_03825"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HXW11866.1"
                     /translation="MNSDRKQNCKLIKAGKLESITSMSGTNKLNNSLNWLIGGAQGSG
                     VDSAANIFSRACAEGGLQVFGKREYYSNIKGEHSYFTVGVSEKEIRSHVDEVSMLVSF
                     DAETLLRHTASVVKGGGIVYDTELTDVKIGEVATLDDAFRDRLIGLLEREGKLLTVQG
                     ILNYASDRGVNLFSIPYFQLLEEFSAKSEDHSLSKLSRMVNVMSLSCSMALLGFPFET
                     LGSAIKFIFRSKPKIAELNVTAANYAYEYTRIHHDASALAFKLTTKNPLPNVILVQGN
                     QSS"
BASE COUNT          849 a          614 c          623 g          878 t
ORIGIN      
        1 taaatatgcc tttgaagggc ctttttccta taattggaat ttccatttct gcctcaaaag
       61 agtccctttg ccttccgaaa gcgtttcttt ctactactat gtttaacaac gatagtaact
      121 tttgatttgt ttgtccaatg accctgtcat gagttctagt agataggata atcatacctg
      181 cacacgttcc taataccggc attcctttag atatcacatc ggcgatctta cgaaaaagtt
      241 ccctattgac ggtaaccatg ttgctgatta cggtgctttc tccaccaggc aaaattaaac
      301 cactaattcc taaaatgtct tcagagtgtc gaacaattct tacgtcaccc ttcttaccta
      361 gacaattaaa agcgattcta gtctgggaaa cgttctcctc gacgtctcct tgaattccta
      421 atactcctat tacaggtcca tcttgtctca tacggatggt cctctttcct gcatcctcaa
      481 agccaagttt tgagtatcaa gccccaacat agatttcttt tcgtccacca ttttctgtga
      541 ttctagtaca gtggtaggat catcaaagta ggtagtagcg agaactattg cctgagctcg
      601 ttgtgaagca tcgtctgact tgaaaattcc tgaacctaca aagacgccgt cacagccaag
      661 actcattaaa agtgcggcgt cagctggtgt agatatcccg cctgccgcaa aatttactac
      721 tggtaatttc cctaacctgg ctgtctcttc aactagaggt agagcagatt gtagctgtct
      781 ggacgccttt atgagttctt gcggatcatc tacaattgaa ttaagccttc gtatatcatt
      841 atttaccgcc ttaatatgtg acaccgcctc agctacattg ccagtccctg gctcaccttt
      901 ggttctaatc atagaacagc cctcttctat tctacggagg gcttcgccaa gatttttagc
      961 accattcaca aatggtactt tgaaactcca tttccataga tggttatctt catcagctgg
     1021 ggtgagtact tcgctttcat caatggtatc aacaccaatc tcctctaaaa tttgagcttc
     1081 tccaagatga cctatcctgc acttggccat gatagggata gtaactgcgt ccattatctc
     1141 ttggacaacc ttcacactag cagttcttgc gacaccacct gccaacctga catcgaacgg
     1201 gagtttatcg agcaccatta cggccaccgc tcctgcatct tctgcaattt gcgcttgctc
     1261 aatattggtg acatccataa taactccatg cttctgcatg tgtgtgaatc ctctcttaac
     1321 caaggtagtc ccagtagtaa ttggagagtg agaaccgata atacgtcttt gaatatttct
     1381 ctgctcaata atttcggatg ggacgagaga tatcgtcatt tacaggagtg tactgctaac
     1441 agttatttta tgttttatat gaatacccta atgactttcc agcaaactga atttatcata
     1501 tgccatggca ccttaacaaa gagcgttttt tagccagtcc tcacaatgtg gtaaagccac
     1561 gtcgtagcct tcttatccat acaaaaatca gtatatgcaa ttgttttaat tgcggtatta
     1621 ggtacggcgg gaataacaac aacggttcca tacttagaac aagtctctgc ggatcctgac
     1681 accaaggtaa agtcttgggt gagtgaggat ggaaaccatg tggggggtgt tgactgtttt
     1741 aaagatgatg gaggatgtaa ggaagttaag gaagagtttg gaagcaatgt gaataaggtg
     1801 tcaagagagt cgtgtgagag ttcttcaggc ggtgaaaagt gtaagcaaga aaaaatagaa
     1861 aaatagcact tacacttatt tagagattag tgtcaagtat caatcgtaga atgagagagg
     1921 ccgttttgtg ccacatccaa attgtaatta aaagtataat aactgacaaa ctggatattt
     1981 taagatatgg ttgatgagac caaggtggat cctccgccgt gcgatatatg cggtaatgct
     2041 ttagaggcat gtttgtgtgt ttgtccatat tgtggtgaac gagataaatg tgaatgttgt
     2101 ctatatgatg ctgcaactgg tggcggatga attctgatag aaaacaaaat tgtaaactaa
     2161 taaaagctgg caaattagaa tcaataacat cgatgtcagg tacgaataag ttgaataact
     2221 ctctgaactg gctcataggt ggtgctcaag ggagcggcgt ggattcagcc gcaaatatct
     2281 tttcaagagc atgcgcggag ggaggattac aggtatttgg aaagcgtgag tattactcca
     2341 acataaaagg agagcatagc tattttactg tgggagtctc cgagaaagag attcgatcac
     2401 acgtggatga agttagtatg cttgtctcat ttgacgctga aactttgctt aggcatactg
     2461 catcagttgt taagggaggt ggaatcgttt acgatacaga gctcaccgat gtcaaaatag
     2521 gagaagtagc aacgttggat gacgctttta gggataggtt gattggtctt ctagagaggg
     2581 aagggaaact actgactgtt caaggaattc ttaactatgc ctctgataga ggcgtaaatc
     2641 ttttcagtat cccatacttc caattgctcg aagaattttc cgcaaagagc gaagatcatt
     2701 ccctaagcaa attatcacga atggttaatg taatgtcttt atcttgctcg atggcgttgc
     2761 taggctttcc gtttgaaacc ctcggtagcg cgatcaaatt catttttaga tctaaaccaa
     2821 agatagcaga attaaatgtc acagcagcta actatgctta tgaatatacc agaatacatc
     2881 atgatgcgag cgctctggct tttaaactaa caactaagaa tcctctcccc aacgtgatac
     2941 tggtccaggg caaccaatca tcag
//
LOCUS       DASPFX010000183         2835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1328263, whole genome shotgun sequence.
ACCESSION   DASPFX010000183 DASPFX010000000
VERSION     DASPFX010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1328263"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..1406
                     /gene="aspS"
                     /locus_tag="VD694_03830"
     CDS             84..1406
                     /gene="aspS"
                     /locus_tag="VD694_03830"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HXW11867.1"
                     /translation="MSRSQESKGMNDNDTLKRTFAVSIDKNNIGQNLMFVGWIEDFRD
                     MGKIGFISVRDMTGNFQGVVTGELLINLREIPRQSVVIINGIIQETRAENFQVEVKVE
                     KIEILSKAANPLPIDPTGRVSSSLDKRLDSRALDLRNFRISNIFKTRSIALFLIRKYL
                     FSKMFVEVNTPKIIGSATEGGADLFGFEYFSKKAFLAQSPQLYKEQLTLGLERVFEIS
                     SYFRAEPSHTVRHLSEFVSVDLEAAFLEYGDVMDIIEDLVISTIRDLYTNHGNQMKFF
                     GDSQDILLDKIPRITYEKCLEELKSLGERIEFGEDLSDPALRKLGEIYPKFYFIVDWP
                     TKLKPFYILEHEKKPELSKSFDLQYGYLEIVSGGTREHDSAKLKNKLQEKGLNPSSFS
                     DHLQTFEWGMPPHSGCGLGFDRFMMILTKSTNIREVVLYPRDTERLNP"
     gene            complement(1396..1812)
                     /locus_tag="VD694_03835"
     CDS             complement(1396..1812)
                     /locus_tag="VD694_03835"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HXW11868.1"
                     /translation="MSDLALLITQKQIDTLECFTKEDFPNESCSLLLGNIVANEYCVK
                     KLKKMENVAHSEYSFNMDPDELMKAYQWTSANGLNVIGIFHSHMVGVNPSSTDLTFMK
                     INPVIWLIYGVSSSTYKAYLLVEDSLEEIKIKISKD"
     gene            complement(1930..2733)
                     /locus_tag="VD694_03840"
     CDS             complement(1930..2733)
                     /locus_tag="VD694_03840"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HXW11869.1"
                     /translation="MSDWDLITPGIGLTSIGIVGVAISLSGIAHTFTEGMHAVSILTM
                     FIGLIFLAAGIFKDGFPTSGKAKSATFITLGFLVTFGLAAAITASTVTPSITAYIGLM
                     LIISIPATVLTVASYKRTPYFKAIAVIFVMAAVVGGSTFYVFGLVTPKAGQENIENAE
                     AVQNQTTPARNITNTVKTTILPGSSAPGNPSFEPANVTVPKDGGIEWTNNDNVPHTIT
                     SLIDDGKTFDSKTMKPNATFILDAMTLKDSQYDYFCTLHPHMKGKIIVG"
BASE COUNT          901 a          506 c          559 g          869 t
ORIGIN      
        1 tgaaagtaaa gattatgaga aattctttag cataattgag aaaataaaaa aaattgttaa
       61 tgcagttaga aaagtagagc ttgttgtcga gatcgcagga aagtaaggga atgaatgata
      121 atgatacttt gaaaagaaca tttgctgtat caattgataa gaataacatc ggacaaaatc
      181 tgatgtttgt aggatggatt gaagatttca gagatatggg gaaaattgga ttcataagcg
      241 ttagagacat gaccggaaac tttcaggggg tagtcaccgg agaattacta attaatctta
      301 gggaaattcc aagacagagt gttgtaatta tcaatggaat tattcaagaa actagagcag
      361 agaattttca ggttgaggtt aaagtagaaa aaatcgaaat tttgtccaag gcagctaatc
      421 ctcttccaat tgatccaacc ggaagagtaa gctcatcgtt ggataagagg ctagattcca
      481 gagcgctaga tttacgaaat tttagaattt caaatatttt taaaaccaga tccattgcac
      541 ttttcttgat tcgtaaatac ctgttctcca aaatgtttgt agaagttaac actccaaaaa
      601 taatcggaag tgccacagag ggcggtgcag atctttttgg tttcgaatat ttttcaaaga
      661 aggcattctt ggctcaaagt ccgcagcttt acaaggaaca acttacctta gggcttgaaa
      721 gggtatttga aatttcatct tattttagag ctgagccttc acatacggtg agacatcttt
      781 cagaatttgt aagtgtggat ttggaggcag cgtttctaga atatggtgat gttatggata
      841 tcattgaaga tttagttatc tccacaataa gagatcttta tactaatcat ggtaaccaga
      901 tgaaattttt tggagacagt caggatattt tgcttgacaa aataccaaga attacctatg
      961 agaagtgcct tgaggagttg aaaagtttag gggaaagaat tgaatttggc gaggaccttt
     1021 ccgatcctgc tttaagaaaa ctaggcgaaa tctatccaaa gttctacttc atagttgatt
     1081 ggccaacgaa gctaaagcct ttttacatac tggaacacga aaaaaaacct gagctctcaa
     1141 agtcatttga tctgcaatat ggttatcttg aaattgtttc tggaggtaca agggaacacg
     1201 attcggcaaa attgaaaaat aagttacagg aaaaaggact aaaccctagt agcttttcag
     1261 accatttaca aacatttgaa tggggcatgc ctcctcactc tggatgtggt cttggctttg
     1321 ataggtttat gatgatcctt actaaatcta caaatatccg agaagttgtt ctctatccta
     1381 gagacactga gagacttaat ccttagatat ctttatcttt atttcttcca atgaatcttc
     1441 tactaacaaa taggccttgt atgtagaact tgatacccca tatatgagcc aaatcacggg
     1501 gtttatcttc atgaaagtca aatcagtgct agacggatta accccgacca tatgtgaatg
     1561 aaagatacca ataacattca atccatttgc agatgtccat tgataagcct tcatcagttc
     1621 atcaggatcc atattaaagg agtactccga gtgcgccacg ttttccattt tttttagctt
     1681 cttcacacag tattcattgg cgacaatatt tcccaaaagt agcgagcatg attcattggg
     1741 gaaatcctcc tttgtgaaac actctaaagt atcaatttgc ttttgagtaa ttagtaatgc
     1801 caagtcggac atgattagtt ctccacatta atatttggta aactcgagct tatattcgat
     1861 tcaaatcgac gaccttattt agactagggt ttacaagcaa tctctttgtg cactcacatc
     1921 agagcaagtc taacctacta ttatttttcc cttcatatgg ggatgcaaag tacagaaata
     1981 atcatactgc gaatccttaa gcgtcatagc atcaagaatg aatgttgcat ttggtttcat
     2041 agtttttgaa tcaaacgtct taccatcatc tattaaactt gttatcgtat gaggaacatt
     2101 atcattgttt gtccattcta ttccaccatc ttttggaact gtcacattag ccggttcaaa
     2161 gctgggattt cctggtgctg atgaaccggg aagaatggta gtcttgactg tatttgtgat
     2221 atttctggca ggggtagttt gattttggac cgcctcagcg ttttcaatat tctcttgccc
     2281 ggcttttggt gtaactaacc caaatacata aaatgtagat ccaccgacta ctgccgccat
     2341 tacgaagatt accgcgattg ccttaaagta aggcgtcctc ttgtatgatg ccactgtaag
     2401 tacagtggca ggtattgata tgatgagcat caatccaatg tatgcagtga tactaggtgt
     2461 tacagtacta gcagttatgg cagctgcaag accaaaggta acgagaaaac ctaaagtaat
     2521 aaaagtcgcg gatttagctt ttcctgaagt tggaaatcca tccttgaaaa ttccagcggc
     2581 cagaaatatt agtccgataa acatggtgag tatactcaca gcatgcattc cttcagtaaa
     2641 tgtatgtgca atccctgata gtgaaatagc gaccccgaca atacctatgg atgtaagtcc
     2701 aatccctgga gttataagat cccaatcaga cattctttac tacgtgaact ccagctcaca
     2761 taattaatct tttcttgtac tttagtacca tacatcggga tttgcggagt tctgctatct
     2821 taaatagaac caatg
//
LOCUS       DASPFX010000184         5218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1683419, whole genome shotgun sequence.
ACCESSION   DASPFX010000184 DASPFX010000000
VERSION     DASPFX010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5218
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1683419"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VD694_03845"
     CDS             <1..408
                     /locus_tag="VD694_03845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11870.1"
                     /translation="VTRKTTRIHPRKERSIYVKRSSGRQEKFDSHRMTQTVSRSGVPF
                     LMVRDITKKVVRKIGLKQRNKEVSKNSKSTRNSNLQRNKNTKEVIIPGNEIRSMISEL
                     RSDIAGSYEGQSPSNPRLERDESIDSTLLTLLP"
     gene            complement(724..1539)
                     /locus_tag="VD694_03850"
     CDS             complement(724..1539)
                     /locus_tag="VD694_03850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HXW11871.1"
                     /translation="MLNMETNNKWIELELVKLYAIWLREFKVFLREKSRLIASTFTPL
                     LWLFVIGEGFGATTDLFGTARFAADTNIGYQQFIFPGIICMSVIFTSVFFGSYIIWDR
                     KFDFLKSVMVAPVSRTTIFLGKAFGGMTTSLIQAAILLIVGFVIGIHYTPLSMVFIVI
                     IILLLSFTLTSLGLTLGSHMESLEGFQLIVSFVVFPLFFLSGALFPLDNLPTWLSILT
                     TLDPVTYGVGALREVMLGITGMNSFAMNIGVLLLSAVSLGTVGALSFGRMRAV"
     gene            complement(1517..2545)
                     /locus_tag="VD694_03855"
     CDS             complement(1517..2545)
                     /locus_tag="VD694_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HXW11872.1"
                     /translation="MITIKNLYKKYDNVTVLNDINIKVFDNEVFGLLGPNGAGKTTLI
                     HILATLIKPTAGTATVNGYDIIKNPSEVRSSIGIVFQAPSSDDMLSGYENLKLHSLLY
                     AVPKELREKRISEVLELVGLTNRKDDQVKKYSGGMRRRLEIARGLLHKPTVIFLDEPT
                     LGLDPSSREVMWKYINRLVKDEKITLILTTHYMEEADFLCDRIGIIDKGMIIALDSPT
                     QLKERLGGEVIEMELAKKRYVDKENIYLLLKQCNFVRKVDLDTKKGSLLIYVDDASHN
                     LPAILKILNNTNNTEVESVELRSPTLNDVFLKFAQRHITRKQGHDDEDDDNSEGGFME
                     RYAQYGNK"
     gene            2771..3730
                     /locus_tag="VD694_03860"
     CDS             2771..3730
                     /locus_tag="VD694_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HXW11873.1"
                     /translation="MIPVSEEVMINAVGKVNKSVVNIASVRLMQDQLFRVFPVQGVGS
                     GIILDNKGHILTNNHVIDDTERLRVTFGDSKQANAKTIGKDEVTDLAVVKAEPIELYS
                     NNEMNFQPAVLGDSDELRVGQIVMAVGNPFGLTGAPTVTAGIISSLNRIVQFENGILE
                     LVQTDAAINPGNSGGPLINTKGEVVAINTAKIPYGQGIGFAVPINMVKSILAELIEDG
                     HVSRPWLGISTIKIDPKIARYYRLPIVEGALIVNVEPYSPAENAGLRRGDIIEEVDGN
                     RIQSPSQISSYIRQKKKASDRVTVMVNRYGRIYEVPFQLEARP"
     gene            complement(4095..4802)
                     /locus_tag="VD694_03865"
     CDS             complement(4095..4802)
                     /locus_tag="VD694_03865"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HXW11874.1"
                     /translation="MRKKIALVTGGNRGIGFESCRQLARSGFTVLLTARDADNGNTAV
                     NKLVNDEGLDVIFYLLDVTNKDHIKNISRQVEQQYGSLNVLVNNAAILYDTWQHAIDV
                     DLKVVNQAIDTNVYGPWRLCQAFIPIMKRNGHGRIVNVSSLGGSLHYMQEGGTPAYSI
                     SKAALNVLTRRLAAELQGTGILVNSIDPGWLATDMGGPGGGPVEEGVRGIIWAATLPE
                     DGPSGGFFNADGRPVPW"
     gene            complement(5006..>5218)
                     /locus_tag="VD694_03870"
     CDS             complement(5006..>5218)
                     /locus_tag="VD694_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11875.1"
                     /translation="TNDFSFTFKYYFSRHSNFISKHTNLRFMWLYVEEKGIISNHKLR
                     GQSAQDIVNEYFSIATNITSSKFLGM"
BASE COUNT         1682 a         1005 c          999 g         1532 t
ORIGIN      
        1 gtaactagga aaactacacg catacatcct aggaaagaaa gatccatata tgttaaaaga
       61 tccagcggtc gacaagaaaa attcgactcg catagaatga cgcagaccgt cagccgctct
      121 ggagtaccgt ttctcatggt cagagacata acaaaaaaag ttgtgcgcaa gataggtcta
      181 aagcaaagga acaaagaggt aagcaagaat tcaaagtcga ctagaaactc aaacttacaa
      241 aggaataaaa atacaaaaga agtgatcatt ccaggtaatg aaattaggag tatgatcagc
      301 gaactccgat cagatattgc tggatcttat gaggggcaga gtccaagtaa ccccagatta
      361 gagcgagacg aaagtatcga ttctacgtta ctaacgttac taccctgaaa actaaggaga
      421 tgtaactaaa gggagcaaag tccatacagt gatatggact aataaatcaa cagagattcc
      481 tgatgaattg acgcagatca aagccaaaat taaagaaata gtttcaagaa aatgatttga
      541 tgttattcgc ctgcatcagt acatagaatc aatgcctttt cagaagtgtt atagttatat
      601 gcgtatcagt taacttcgat tcagtgagca gttatattga taccctattg agaacatgtc
      661 tgaggatgca attggttcgt tagaagagaa aaaatccgta cgcgcacaca caattctagt
      721 taactagaca gctctcattc gtccaaacga tagcgctcca acagttccta aagatactgc
      781 ggagagcagc aagacaccga tgttcatagc aaatgagttc attcctgtta ttcccagcat
      841 tacttctctc aatgcgccta ctccataagt gactggatcg agggtagtta aaatagaaag
      901 ccaagttgga agattgtcta gcggaaaaag agctccactt agaaaaaaaa ggggaaatac
      961 aacaaagctt acgatcagtt gaaagccctc caaactttcc atatgactcc caagagtaag
     1021 accaagcgat gtgagggtaa atgaaagtag aaggattatg ataacaataa aaaccatgga
     1081 caatggagta tagtgaattc cgatcacaaa tccaactatt agcaatatgg ccgcttgtat
     1141 caatgaagta gtcatgcctc caaaagcctt tcccaggaaa atcgtagttc tactaactgg
     1201 agctaccatc acacttttga ggaaatcaaa ctttctatcc cagattatat aggaaccaaa
     1261 gaatactgaa gtaaatataa ctgacataca tataatacca ggaaaaatga actgttgata
     1321 tcctatgtta gtatcggctg caaatcgcgc tgtcccaaaa aggtcggttg tcgctccgaa
     1381 cccttctcca ataacaaata accataataa aggggtaaat gtagatgcaa taagcctact
     1441 tttttctctt aaaaagactt tgaattctct aagccaaata gcgtaaagct taactaactc
     1501 tagttctatc catttgttat ttgtttccat attgagcata tctttccata aacccccctt
     1561 cagaattatc atcatcctca tcatcatgtc cttgtttcct ggtaatgtgt ctctgtgcaa
     1621 atttaagaaa aacatcgtta agagtagggc ttctaagttc taccgattcc acctcagtat
     1681 tattggtatt atttagtatt ttcagaatgg caggtagatt gtggcttgcg tcatctacat
     1741 aaatgagaag acttcctttt tttgtatcta ggtcgacttt acgtacaaag ttgcactgct
     1801 ttagaagaag gtagatattt tctttgtcga cgtatctttt ttttgctagc tccatttcta
     1861 ttacctctcc tccaagtcgt tctttcaatt gggtcggtga atcaagagca attatcatcc
     1921 ctttgtctat gataccaatt ctatcacaaa gaaaatctgc ttcttccatg taatgcgtcg
     1981 taagtataag cgtaattttt tcatccttta ctagtctatt aatatatttc cacatcactt
     2041 ccctgctact gggatcaagc ccgagcgttg gttcatccaa aaagattaca gttggtttgt
     2101 ggagtaaacc tctggctatt tccaagcgtc tacgcatgcc tccagaatat tttttgactt
     2161 ggtcgtcctt tctgttggta agacctacca gctctaatac ttcagatatt cttttttccc
     2221 gaagttcttt tggaactgcg tataaaagtg aatgtaactt caagttttcg tagccagaaa
     2281 gcatatcgtc gctactggga gcttggaata caatgccaat actcgatctg acctcagagg
     2341 gattcttgat gatgtcatat ccattcactg ttgctgtacc agcggttggt ttgatcaaag
     2401 tggcaagaat atgtattagc gtggtcttgc cagccccatt aggtcctagg agcccaaata
     2461 cctcattatc aaatactttg atattaatat cattaagaac agttacgtta tcatactttt
     2521 tgtagaggtt cttaatggtt atcaatgtct gatctaaacc gaatgaaact tcgtactctc
     2581 gacatatatc tcttgtattt cctactctgt tattagtata tcctaggcct ataatctcta
     2641 cccatggtat ctaagaatga ttattacttg aaggcccatg tcgtattgta tatacgatat
     2701 atataaatag gcaagctgct atatatcgta taaccaatat ggagaataag gaagtgatct
     2761 tcacaacaca atgataccgg tttcagagga ggttatgatt aatgcggttg gaaaagtaaa
     2821 caaaagtgta gtcaacatag caagtgttcg attgatgcaa gatcagcttt ttagagtatt
     2881 tccggtacaa ggcgtaggat ccggaatcat acttgacaat aagggacata tactaaccaa
     2941 taatcatgta atagatgata cagaaaggtt aagggtaact tttggtgatt ccaaacaggc
     3001 caatgccaag acgataggta aggatgaagt aactgatttg gctgttgtta aggcggagcc
     3061 tattgaactc tacagcaaca atgaaatgaa ttttcaacct gcagttcttg gcgactccga
     3121 tgagctcagg gttggacaga tagttatggc agttggcaac ccgtttgggc ttactggagc
     3181 gcctactgtc actgctggaa ttattagttc actaaataga attgtacaat ttgaaaatgg
     3241 gatcctggag ttggtccaaa ctgatgctgc gataaatcca ggtaattcag gtggaccact
     3301 aattaacaca aagggggaag tagttgcaat taatacggca aaaataccat atggacaagg
     3361 aattgggttt gcagttccta tcaatatggt aaaatcgata ttagccgaat tgatagagga
     3421 tggacacgta tcaagaccat ggctaggcat aagtacaata aagatagatc ctaagatagc
     3481 cagatactac agactaccta ttgtagaagg tgctttaatc gttaacgtcg agccatatag
     3541 tcctgcagaa aatgcaggac ttagacgagg agacattatt gaagaggttg atggaaatag
     3601 aatacagagt ccttctcaaa tatcatcgta tataaggcag aaaaagaaag ctagcgaccg
     3661 ggtaacagtt atggttaatc gatatggtag aatttatgag gttcctttcc agctagaagc
     3721 tcgtccttag ccttaccata tttaagatca tcaatatatg tcccattctt ttttcatcaa
     3781 gaatcaattc caacaaaaaa agagtaggaa cagcaagaaa aatattagaa caacaacaaa
     3841 gtcctcttcg tatatttttt ggtattgaaa atgtccctct cagactaatt tgtattaggt
     3901 gtttgctgtc cgaagtattg ctaaatagcc agaaggcgaa gggtttgtca gaatatttgg
     3961 aataggccaa aaaatgttgt ctcacgtccc tcattaataa agaattgtct atgagaagtt
     4021 ctttatctag gaacaaacat acataagacg ggcagagagc aggacagcaa gatggataga
     4081 cattataaca acctttacca aggcacaggc ctaccatcgg cgttgaagaa accaccactt
     4141 ggcccatctt cgggcaatgt tgcagcccat atgataccac gcactccttc ctctacgggt
     4201 cctccacctg gtccgcccat atctgtggca agccaaccag gatcaataga gttaacaagg
     4261 atacctgttc cttgtagctc tgctgcaagt cttcgggtaa gaacatttaa cgctgctttt
     4321 gagatactat aagcaggcgt accaccttcc tgcatataat gtaacgaacc tccaaggcta
     4381 gaaacgttta caatgcggcc atgtccattt ctcttcatga tcggtataaa ggcttgacat
     4441 aatctccatg gtccataaac attggtatct atagcttgat tcacaacttt taggtcgaca
     4501 tctattgcat gttgccatgt atcgtagaga atggcagcat tattgactag cacatttaga
     4561 ctaccgtact gttgttccac ttgtcttgat atgttcttaa tgtgatcttt atttgttaca
     4621 tcaagtaagt aaaaaataac atccaatcct tcgtcattta ctagcttatt tacagcagtg
     4681 ttaccattgt cagcatctct ggctgttagt agaacggtaa atcctgatct cgcaagctga
     4741 cgacaagatt caaatccaat accacgatta cccccagtaa ccaaagcgat tttttttcgc
     4801 atttaacttc tttttatctt taagaataaa aaagttatag gttttaggcc atgaaaactg
     4861 taatacttag agaccccatg tcatactata ggataacatt aatagtaggc aagattgcaa
     4921 tgtgatagat actgatcttc gaggtctgtt tctcctttag ttcttctctg ccataggatt
     4981 cattgacagc attgattcgt tcaacttaca tacccaagaa tttagacgaa gttatgttag
     5041 ttgctattga aaaatattca ttgacgatat cttgagcact ttgacctctc aatttatgat
     5101 tacttattat tcctttttct tcgacatata accacataaa tcgtagatta gtatgttttg
     5161 atatgaagtt tgaatgtcgg gagaaataat atttgaaagt aaaggaaaaa tcattggt
//
LOCUS       DASPFX010000185         2363 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_246448, whole genome shotgun sequence.
ACCESSION   DASPFX010000185 DASPFX010000000
VERSION     DASPFX010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246448"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..661)
                     /locus_tag="VD694_03875"
     CDS             complement(<1..661)
                     /locus_tag="VD694_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HXW11876.1"
                     /translation="MRNKSKNSSSNGNLKNNNINPDNSHTLKNDVDNDIVADSKPKDM
                     ETIEESYDKPDSEKFFTFTFYKIDPKWRWLNEMGKDEASREFIELLQTALKRMKIRTY
                     STLGLRHESEFMIWAISPSLENIQVLSSKIYTTILGKYIEPVSTFLSLTRRSIYSNQV
                     KRGFEMDKDPLQYVIVYPFIKSREWYLLPFEERKEMMEEHIKVGRKYPEILLNTTYSF
                     GI"
     gene            complement(841..1296)
                     /locus_tag="VD694_03880"
     CDS             complement(841..1296)
                     /locus_tag="VD694_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11877.1"
                     /translation="MAAEQKDREVFITVKEFHEYLKRNLDNVGLDPSFLSRYLNEGFS
                     GGEKKRSEVMQMLVLKPNLAILDEPDSGLDIDAVKAVAEAINKLIETGAGVIVITHYA
                     RILRYLNKLDKVHVMSKGRIIKSAGKELSEELEAKGYTWLGLSDDSHTS"
     gene            complement(1339..1542)
                     /locus_tag="VD694_03885"
                     /pseudo
     CDS             complement(1339..1542)
                     /locus_tag="VD694_03885"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(2036..>2363)
                     /locus_tag="VD694_03890"
     CDS             complement(2036..>2363)
                     /locus_tag="VD694_03890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11878.1"
                     /translation="SDHAKAFQLFSNGKTPTLVSIIVDLSYETVKRVYFEYLTLNNKS
                     DFVNVLWKYPEFLPFFVDIAEKMKRAELFREEVSYMPANLIYCRASQHKKEWLEHEIR
                     SLEIKK"
BASE COUNT          705 a          437 c          371 g          850 t
ORIGIN      
        1 caattccaaa tgaataagtc gtattgagta aaatttcagg gtattttctg cctactttga
       61 tatgctcttc catcatttct tttctttctt caaagggtaa gagataccat tctcgagatt
      121 ttataaaagg atatactatt acatattgca atgggtcttt atccatctcg aaaccacgtt
      181 taacttggtt tgaataaatt gatcttcgag ttaaagagag aaatgtggat accggttcga
      241 tgtattttcc caagatagta gtataaattt tcgaagagag aacttgaata ttttccaaag
      301 atggagaaat ggcccagatc ataaactcac tttcgtgtct taatcctaga gtagaatagg
      361 ttctaatttt catccttttg agtgcagttt gaagtaattc tataaattca cgtgaggcct
      421 catccttacc catttcattt agccaacgcc acttgggatc tatcttataa aaagtaaaag
      481 taaagaattt ttcagaatcg ggtttgtcat aggattcctc tatagtttcc atatccttag
      541 gtttggaatc tgcgacaatg tcattatcga catcattttt taaggtatgt gaattatcag
      601 gattaatatt attatttttt aaattaccat tagatgaaga attcttactt ttatttctca
      661 taagcctatg gagattttta attaataaat agtttaacac cttaattata gagccagtat
      721 catactaaat gaaaaatgta tgccatagat tacatttata ctgctactat taccatggta
      781 gaaataaacc attagccagc taactagcta actatatcta gagacaaact atctaactat
      841 ctaactagtg tgtgaatcat cagacaagcc tagccatgta tagcctttgg cttcaagttc
      901 ctctgagagc tcttttcctg ctgattttat tatccttcct tttgacatta catgtacctt
      961 gtcgagtttg ttaagataac gtagtatcct agcataatgg gttatgacta taactcctgc
     1021 acctgtttca attagtttgt ttattgcctc tgctacagct ttaacagcgt ctatatcaag
     1081 tccagaatct ggttcatcta aaatagcaag attaggcttt aagacaagca tctgcattac
     1141 ttctgatctc tttttttctc ctccagaaaa gccttcattt aggtatctgc taagaaagct
     1201 tgggtctaag ccaacattgt ctaggtttcg ctttaggtat tcatgaaatt cctttactgt
     1261 tatgaaaacc tcacggtcct tttgttctgc tgccaatgac ttgcttagta aattgtatgc
     1321 attacgtaaa aagtgacttt atccaacacc tgatatttca gttggatatt gaaaacccaa
     1381 aaagagtcct ttttttgccc tttcgtctgt ttttaagtta actatacttt cattgttaac
     1441 tagaatatct ccagaaatta cagaataacg gggatgtccc aataaaacat tggccaatgt
     1501 acttttgcca gagccattta atcccataat ggcatgaact tcacctttgt tgacctatag
     1561 aacaatattt gttttcgaca aaatgtttta gcttttggtc tttgagacgc tttaatgttt
     1621 gtttattacg atatcatgga tcattaaaca aattgaactg aacatagcat ctgccaaact
     1681 tctatcgtga aatctatact ctaattcctg tctggttgaa aatcaagtat aaatccccaa
     1741 caattttata aggaatatag attcaaaatt ttttaagggt ccgtagctca gcatggatag
     1801 agcgcctgcc ttctaacttt tagcttagga agagagccgg aagtcgaggg atcgaagccc
     1861 ttcgggcccg ttagatatct cttacttttt agggcccaca cttgtggtat aatttaactt
     1921 tttaagattg attataatct tctgaaagac atgtaaatct gcttggactg tatggaagtt
     1981 ttgctttaat attattatct aatcttgtta tttcttcccc catcttcctc catactcatt
     2041 tttttatttc tagacttctt atctcatgct ctaaccattc ttttttgtgt tgactggctc
     2101 tgcaataaat taaattcgcc ggcatataac taacctcctc cctgaacagt tccgctcttt
     2161 tcatcttttc ggcaatatca acaaagaaag gtaaaaattc tggatatttc caaagtacat
     2221 ttacaaagtc tgatttgtta tttagagtta aatattcaaa atacactctc ttgactgtct
     2281 cataagataa atccacaata atagatacta gggtgggagt ctttccattt gaaaacaatt
     2341 gaaacgcttt tgcatggtcg gat
//
LOCUS       DASPFX010000186         3685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1450715, whole genome shotgun sequence.
ACCESSION   DASPFX010000186 DASPFX010000000
VERSION     DASPFX010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1450715"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..862
                     /locus_tag="VD694_03895"
     CDS             59..862
                     /locus_tag="VD694_03895"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HXW11879.1"
                     /translation="MIIHSQHPDSHYIIHPLIYERSIESRPYQKNIAEFALNKNALVF
                     LPTALGKTIIAIMLTACILYTYRRKRVMVVAPTRLLVLQHMKSFFSVLKLSQDKIAEI
                     TGKTPPLPRTAIWNNRDIRLVFATPEVVRNDLQDNRLSLNDFSLLVIDEAHRAVKDYA
                     YTIIVSQYVNQSEHPVILAMTASPGSDAKRIHDVYKNLFIEHIEYRTEEDMDVKPYIN
                     SINVNWQWVGLNSEYNYIRSILKNMLNDKLRWLFQHGLLRKRGGHSMDF"
     gene            909..1127
                     /locus_tag="VD694_03900"
     CDS             909..1127
                     /locus_tag="VD694_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11880.1"
                     /translation="MSQEETRASLYFALMQQSLALTLLYCMELIESQCAASLGAFLDR
                     IEKDSNTFSSNSNNIRGGGSGKAQKSLR"
     gene            1415..1675
                     /locus_tag="VD694_03905"
     CDS             1415..1675
                     /locus_tag="VD694_03905"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HXW11881.1"
                     /translation="MKQEEQAQMLEAFRRGEFSVLVATSIAEEGLDIPEVDLVIFYEP
                     IPSEIRYIQRRGRTGRRSSGSVIILAAKDTIDERHLMPAKDV"
     gene            1681..2016
                     /locus_tag="VD694_03910"
     CDS             1681..2016
                     /locus_tag="VD694_03910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11882.1"
                     /translation="MNQTLSTVESVFKSTNRIISFTPIPDLMTSEEIAAMEVDRSKFE
                     VNTVKAIEMQTTSTLTKGVPKYISLLEKGYTSQFVRDVNNATRKIHSLLVKKGRFGED
                     VDIIRYIRF"
     gene            1985..2326
                     /locus_tag="VD694_03915"
     CDS             1985..2326
                     /locus_tag="VD694_03915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11883.1"
                     /translation="MSISLDTLGFDNNILVEVLKKLEKLKRIKWLDDVTITLSDNLKH
                     LPGEVHNIYIENILSGITLVMIDGKWHARLNHYDYEGPRHLLKKGTEFKAVSELYHDG
                     KAFCIRIKQIV"
     gene            complement(2610..2810)
                     /locus_tag="VD694_03920"
     CDS             complement(2610..2810)
                     /locus_tag="VD694_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11884.1"
                     /translation="MMSSFPPRCYYCDSKDFGSVDGYERHIVTRHPNLPGYPGPADIK
                     FYGLERQDMSWEKEIKADFEWK"
     gene            complement(2877..>3685)
                     /locus_tag="VD694_03925"
     CDS             complement(2877..>3685)
                     /locus_tag="VD694_03925"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HXW11885.1"
                     /translation="GVGCLVDSCRKCSPCMKGLEQYCMERPTMTYNGIERDGQTRTQG
                     GYSNKIVVDENYVLHIPDNLPLDSAAPLLCAGITMYSPLLHWKAGPGKKVGIVGLGGL
                     GHMGVKIAHALGAEVSVLSHSTRKQDEAEKMGADKFYVASISSPTGQDTFEELEGYFD
                     LILNTLSVEIDWNRYLNLLALDGTMIVVGLPEKETPLSASPLINARRSLAGSGIGGIK
                     ETQQMLDFCSKYNISSDIELIPIHGVNEAYPRVVNSDVLYRFVVDTKSLG"
BASE COUNT         1265 a          650 c          657 g         1113 t
ORIGIN      
        1 acctataagt aaagcaatgt ataactagac actcgttata aggaaaggat ccagtaatat
       61 gattattcat agtcagcatc ctgattctca ttacattatt catccgctta tttatgagag
      121 gtctattgag tccagaccgt accaaaaaaa tattgctgaa tttgccttaa ataagaacgc
      181 actcgtattt cttccaactg cgcttggcaa gacaattata gcaataatgt taactgcatg
      241 tatactctat acttatagac gtaaaagggt catggtagta gctcccacta gactacttgt
      301 actgcaacat atgaaatctt tcttttcagt attaaaacta tcgcaagata aaatagccga
      361 aattacgggc aaaactcctc cgttaccgag aacagcaata tggaataata gagatattag
      421 acttgtattc gctactccag aagtagtaag gaatgatcta caggataata gattgagttt
      481 gaatgacttt agtttattag tcattgatga ggcacataga gctgtaaaag attatgcata
      541 tactataata gtcagtcagt acgttaatca gtcagaacac ccagtgatct tggctatgac
      601 tgctagtcct ggttctgacg caaaaagaat ccatgatgta tataaaaatc tattcattga
      661 gcatatagaa tatagaacag aagaagatat ggatgtaaaa ccgtacatca attctataaa
      721 tgttaattgg caatgggtgg gattgaattc agaatataat tacattcgtt caattctcaa
      781 aaatatgctt aatgataagc tgagatggct ctttcaacat ggattgctaa ggaaaagagg
      841 tgggcattcg atggattttt aaacgagatc taattgatat tggtactgaa attcggtata
      901 atttagaatt gtctcaagag gagacaagag cttcacttta ttttgctttg atgcaacaat
      961 cactagccct tactcttttg tactgcatgg aactcataga aagtcaatgt gctgcttcat
     1021 tgggggcttt tctagataga attgaaaagg atagtaatac ctttagtagc aacagcaata
     1081 atataagagg cggaggaagt ggcaaggctc aaaaatcatt aaggtaactc taaggtaact
     1141 taaaccgatg ataataatga taataatatt aataacaaga atcataaagt taagaagttc
     1201 aatcatagta attctattat caatactacc attcctacta agtataatga tactatggga
     1261 gctattgttt ttactcaata tcgtgatact gcaatacgca tcgttcgtac attctaaata
     1321 gtaataatat aactgcaata ttatattatt actgcaatat aatataactg catctagatt
     1381 tgttggtcaa gcgaaaaaag aaggcgatat tggaatgaaa caggaagaac aagctcaaat
     1441 gttagaagcc tttagaagag gtgagttctc cgtgctagta gcaacttcaa tagctgaaga
     1501 aggtctcgat attcctgaag tagatcttgt tatattttat gaacctatac ctagcgaaat
     1561 taggtatatt cagagaagag gaagaactgg aaggcgatcc tctggctcag tgattatcct
     1621 tgcagcaaag gacactattg acgaacgtca tcttatgcca gcaaaagacg tgtaaaaaaa
     1681 atgaatcaaa cattgagtac tgttgaatct gtttttaaat ccacaaatcg aataatttct
     1741 ttcactccga ttccggatct tatgacaagt gaagaaatag cagctatgga agttgataga
     1801 tcgaaattcg aagtcaatac ggtaaaggct atagaaatgc agacaacctc tacgctcact
     1861 aaaggcgtac ctaaatacat atcattgtta gagaagggat atacaagtca atttgtaagg
     1921 gatgtcaata atgctacaag aaagattcat tcattattag taaaaaaagg gcggtttgga
     1981 gaggatgtcg atatcattag atacattagg ttttgataac aacatactgg ttgaagtctt
     2041 gaagaaactt gagaaactaa aaagaattaa atggttagat gatgtaacta taacgctctc
     2101 tgataatctg aaacatttac ctggagaagt acataacata tacattgaaa atatactatc
     2161 tggaatcaca ttggttatga tagatggaaa atggcatgcc agattaaatc attatgatta
     2221 tgagggacca agacatcttc tcaaaaaggg gacggagttt aaagcggtat cagaattata
     2281 tcatgatgga aaggcatttt gtataaggat aaagcaaata gtgtaaggct tagatcctac
     2341 tctctaccat atcaaatcca aattctcaac aattgatatc aatatcactg ccataatctg
     2401 actagataga atcaatctgt tttcttttca ccaataacag tccatttatt actatttaga
     2461 tacgataatc ccccaaatcg gcttattatc tcttattata actataatag tttttattta
     2521 tttttattca tacttctaat atattctgat taaagttcat cagtgatgca tggtaggact
     2581 aataaataac aaaaccctga aagagtaagc tatttccatt caaaatccgc ttttatttct
     2641 ttttcccatg acatgtcttg tctttctaag ccataaaact tgatatctgc aggtccggga
     2701 taaccaggta agtttggatg cctagttaca atgtgacgct catatccatc aaccgatcca
     2761 aagtctttac tatcacaata ataacatctt ggcgggaaac tactcatcat atttcaccta
     2821 ataaacacct tgttattgta gataactgaa gtgattctgt gcatgagtcg acattatcaa
     2881 ccaagtgact tggtatcaac tacaaaccga tatagaacat cgctattaac aacccgagga
     2941 taagcctcat ttactccatg aattggaata agttcgatgt cgctggaaat attatattta
     3001 ctacaaaaat caagcatctg ctgagtctct tttattccac ctataccaga acctgcaaga
     3061 ctacgacgag cattgataag tggggaggca ctaagtggtg tttctttctc tggaagtcca
     3121 actacgatca tagtaccgtc gagggctagc aaattaaggt aacgattcca gtcaatctct
     3181 actgaaagtg tattaaggat tagatcgaaa tatccttcga gttcctcaaa ggtatcttga
     3241 ccagttggag atgaaataga tgcaacataa aatttatctg cacccatttt ctcggcttca
     3301 tcttgttttc ttgtagaatg acttagcaca ctgacttctg cgcctaatgc atgtgcgatc
     3361 ttgactccca tgtgacctaa tccacccaga cctacgatgc caactttttt tccaggacct
     3421 gctttccaat gtagaagagg agaatacatg gtaatacctg cgcagagaag cggtgctgca
     3481 ctatctaatg gaagattatc aggtatatga agcacatagt tttcgtcaac tacaatttta
     3541 ttcgaatatc ctccctgagt tcgagtttgt ccatcccttt caattccgtt ataagtcata
     3601 gttggtcttt ccatacaata ttgttccaaa cctttcatac aaggactgca cttacgacag
     3661 gaatcaacta aacaaccgac gccca
//
LOCUS       DASPFX010000187         3860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2037488, whole genome shotgun sequence.
ACCESSION   DASPFX010000187 DASPFX010000000
VERSION     DASPFX010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3860
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2037488"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(217..1488)
                     /locus_tag="VD694_03930"
     CDS             complement(217..1488)
                     /locus_tag="VD694_03930"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW11886.1"
                     /translation="MRRKIIVLAFLILLLSSTFVLFSSISKNNISYGAYVRALPESSG
                     QSLVDPSLKVELFFKDGIKGPATSMAFLSPDDILILEKNTGKVQRILNGTLQQNPLLQ
                     VKVGTEVELGMLGIAISKNQQGRTFAFLYYTEANNSGIVVGTRLYRYELVDNKLVNPL
                     LLLNLPATSTILGHENNHNGGKVVIGPDNNVYLVVGDVGGRMGKIQNIMRGNSPDGTS
                     GILRVTQEGKSVHDGPFGSSVPNILYYAYGIRNSFGFDFDPVTGNLWDSENGGIDKDE
                     INYVYPGFNSGWRKTMGMALSRFDPNEDLFYFDGKGKYSDPEFVWKETVAPTALKFLN
                     SSKLGSQYENTIFVGDVKTGNLYNFKLDSTREGLQLDPPLEDKVADTPQEIQSIIFGK
                     GFGVITDIQVGSDGYLYILGIDGTIYKIVPA"
     gene            1742..3172
                     /locus_tag="VD694_03935"
     CDS             1742..3172
                     /locus_tag="VD694_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HXW11887.1"
                     /translation="MTSSLISLSSLDDKYVKQKSITNSEPEWLMEIRNNAFSSYSSLP
                     HEVSPLYKKYSDANLLYPDRVYLSQGTKTYEPEDYLNERIKELDKDTSILKIGSSIIH
                     SKISEKLQKQGVVITDLKNAIDEYGTIIKNSIQSNQLDYSEDKFLALELSCFDSGIFV
                     YIPKNVAIDDPIRIIDVLAPDGTSSITRNIVIAESNSKAGIVQELYSNKPSDEKIQQS
                     LFELLECHVGANAELEVVTLQAMNEKNTVNFSNRKAFIEKDAKVSWYMGLFGSQLSRY
                     KIDSIMKGEGASAEDVEIIFGTNDQSFDVTSNLIHYGPNTRGRVLSKSVMKDNSKSLF
                     KGMIKIDKGGKAAESFLAGHAILLDKGAKSDTIPGLEIETNEVRATHSASVAQIDESQ
                     IFYLMCRGLSNEEAKREIVSGFLEPLSRKMGPTIRAWVNYLMENKWLGKPLMLKTDEA
                     MEHILEVEKSRYRETEDIFEKHYKYR"
     gene            3198..3512
                     /locus_tag="VD694_03940"
     CDS             3198..3512
                     /locus_tag="VD694_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HXW11888.1"
                     /translation="MTAWVKVCEAKTLNNGDIIDFDHDEKKILIAKIKNKIYATDRIC
                     THAYADLSTGFPNEDENTVTCPLHMSRFNLESGVPENLPAEEPLKTYSTEVKDGWVHI
                     LI"
     gene            complement(3523..>3860)
                     /locus_tag="VD694_03945"
     CDS             complement(3523..>3860)
                     /locus_tag="VD694_03945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11889.1"
                     /translation="AGDIIVFRAPEATTEDGKPKVIVHRISEIGTFFGKQVVTTKGDA
                     NPYSIPGIDFPILKENYVGKVVYVIPKIGTISMILTPPINYIVMAIIIGLLIYSIRPR
                     KVEHENETV"
BASE COUNT         1288 a          712 c          662 g         1198 t
ORIGIN      
        1 ttggatcaaa ttgatatccg tcaccaacaa attttagttt cttttctgga tatcttagtg
       61 tgaatctctt gattaggaga tgctttgaac ctgattcaat agcttttatg aatccacctg
      121 cagagttcat ataacaaaca taaactctgc catattttaa gttaagaata caaagaacaa
      181 tatcatgtaa taaatcagat ttatctaccc aagatcttag gcaggaacaa ttttgtaaat
      241 agttccgtca attcctaaaa tgtaaaggta gccatctgat cctacctgta tatccgttat
      301 tactccaaag ccttttccaa atattatact ttgaatttcc tgaggagtat ctgcgacttt
      361 atcttcaaga ggtggatcca actgcaatcc ctcccttgtt gaatcaagtt tgaaattgta
      421 tagattacca gtctttacat caccaacaaa tattgtgttt tcgtactgcg atcccaattt
      481 agaggaattt aagaatttga gggcagttgg agctacagtt tctttccaca caaattctgg
      541 gtcgctatat tttccctttc catcaaaata aaataaatct tcattaggat caaatcttga
      601 tagggccata cccatagtct ttctccaacc actattaaat cccggataga cataattaat
      661 ttcatcttta tcaattccac cattttcact gtcccatagg ttaccagtaa caggatcaaa
      721 atcaaacccg aaactattgc gtataccata tgcgtaatag agtatatttg gaaccgaact
      781 tccaaacggt ccatcatgga cggacttgcc ttcctgagta actcgtaaaa ttccacttgt
      841 tccatccgga gaattgcctc tcataatatt ctgaatctta cccattctgc ctccaacatc
      901 tcctacaact aaatatacat tattgtcagg acctatcact actttcccgc cattatgatt
      961 attttcatgt cctaatatgg tcgaagttgc aggcaaattt aaaagtaaaa gtggatttac
     1021 aagtttgttg tctacgagct catatctgta aagtctggtt cctactacaa ttccagaatt
     1081 attagcctct gtatagtaca ggaatgcaaa tgtccttcct tgttgatttt ttgatattgc
     1141 tattcccaac attcccaatt ctacttcagt tcccactttt acctgaagta atgggttttg
     1201 ttgtagagtt ccatttagga tcctctgcac tttgcccgta tttttctcca gtatcagaat
     1261 gtcatctgga ctgagaaatg ccatactcgt tgcaggtcct ttgatgccat ccttgaaaaa
     1321 tagttcaacc ttcaaagaag gatcaactag gctctgtcca ctgctttcag gcaaggccct
     1381 cacatacgct ccataagaaa tattgttctt acttatgctt gaaaaaagta caaaagttga
     1441 acttagaagc aaaattaaaa atgcaagaac aatgattttt cttcgcatca atagaaaaat
     1501 ttcctgtcaa tcttttatct gttttgacag tctaaccgtg ctaaaacgcg catttattaa
     1561 tttttctcag gctaaaatcc actaatgtaa actaactaca ttatcccaag tgtcgttgaa
     1621 ttattgaatt aagagaaagt atgctgattt agccattgct gattaagtgg accctcaaaa
     1681 ttgagagtct gaataaatag aaagatagat aatatgttta ttcatattta tcctctaatt
     1741 catgacatct agtcttattt ccctatcctc attagatgat aaatatgtga aacagaaaag
     1801 cattacaaat tcagaaccag aatggttgat ggaaataagg aataatgcat tttcgagcta
     1861 ttcttctcta ccacatgaag tttcaccact ttacaaaaaa tattctgatg ctaatctcct
     1921 atatccagat cgtgtttatc tttctcaagg gaccaagacg tacgaaccag aagattatct
     1981 taatgaaaga ataaaggagc ttgataagga tacgagtatc ttaaaaattg gttcttctat
     2041 tattcattca aaaatttcag agaaactaca aaaacaaggc gttgttatca cagatcttaa
     2101 aaatgcaata gacgaatacg gaactattat caaaaatagc atacaatcaa accagcttga
     2161 ttattctgaa gacaagttcc ttgcattaga attatcttgt tttgactctg gtatttttgt
     2221 gtacattcca aaaaatgtgg ctatagatga tccgattaga ataattgatg tgcttgcacc
     2281 agatggaaca tcatccataa caagaaacat tgtaattgct gaatcaaatt caaaagccgg
     2341 tatcgtacaa gaattataca gtaataagcc atctgatgaa aaaattcagc aatcgctttt
     2401 tgagctgttg gaatgtcatg tgggagcaaa tgcagaacta gaagtagtca cacttcaggc
     2461 aatgaatgaa aaaaatacgg ttaatttttc aaatagaaaa gcgttcattg aaaaggatgc
     2521 aaaagtgtca tggtatatgg gtctttttgg ttcccaactt tcaagatata aaattgatag
     2581 tatcatgaaa ggagaaggtg caagcgctga agatgtggaa ataatttttg gtaccaatga
     2641 tcaatcattt gatgtaacat caaacctaat ccactatgga ccaaatacca gaggtagggt
     2701 gttatcaaag tcagtaatga aagacaattc taaatctctc tttaagggaa tgataaaaat
     2761 agacaagggc ggaaaagctg cagagtcatt tcttgccgga cacgccatac tgttagataa
     2821 gggcgcaaaa tcagatacaa ttcccgggct tgaaattgag acaaatgaag ttagggctac
     2881 tcattctgca tctgttgccc aaatagatga aagtcaaatc ttttatctta tgtgtagagg
     2941 acttagtaac gaagaagcaa aaagagaaat tgtaagtgga ttcttagaac cattatctcg
     3001 caaaatgggt cctactatta gagcatgggt aaattacttg atggaaaata aatggctggg
     3061 gaaaccattg atgctcaaaa ctgatgaagc gatggaacac attcttgaag tcgaaaaatc
     3121 cagatatcga gaaactgagg atatattcga aaaacattat aagtataggt agacgacttt
     3181 actggcagtg attggatatg actgcatggg tcaaggtatg tgaagctaaa acgctgaata
     3241 atggtgatat aatagacttt gatcatgatg aaaaaaaaat tctaatagca aaaataaaga
     3301 acaaaattta tgcaactgat aggatatgca ctcatgctta tgctgatctt tccactggat
     3361 tcccaaatga ggatgaaaac actgttactt gtccactaca catgtcaagg tttaatctcg
     3421 agagtggggt acccgagaat ttaccggccg aagagcctct caaaacttat agcactgaag
     3481 tcaaagacgg ctgggttcac atcttaatat aaaaaaatct agtcacacag tttcattttc
     3541 atgttctact tttcgtggtc taatggaata gattaatagt ccaattatta tggccatgac
     3601 gatgtagttt ataggaggag ttaaaatcat tgaaatagtt cctatctttg ggattacata
     3661 tactactttt ccaacatagt tttccttaag aattggaaag tcaatcccgg gaatagaata
     3721 tggattcgca tccccctttg tagtcacaac ttgttttcca aagaaagttc caatttcaga
     3781 gatcctatga acaattactt tgggctttcc gtcttctgtt gtggcctccg gtgctctaaa
     3841 gacaataatg tctccagcct
//
LOCUS       DASPFX010000188         2868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1552406, whole genome shotgun sequence.
ACCESSION   DASPFX010000188 DASPFX010000000
VERSION     DASPFX010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1552406"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            658..924
                     /locus_tag="VD694_03950"
     CDS             658..924
                     /locus_tag="VD694_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11890.1"
                     /translation="MERGKTRTTKNSYINNLSEMQSALFILKCLSEGKNEEYLIQRFD
                     NDEQLVRIWMNLLTELKLLVVNVVGEYVITNKGKDYLQKYNPHW"
     gene            complement(1406..1633)
                     /locus_tag="VD694_03955"
     CDS             complement(1406..1633)
                     /locus_tag="VD694_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11891.1"
                     /translation="MLSCLVDSNDLEEGNEFAEYNQYIGCKEYDRTIMNKLNSLRNLN
                     LITQSIQQHSYPNGINLDIIHKVYLTTFSAA"
     gene            1855..2034
                     /locus_tag="VD694_03960"
     CDS             1855..2034
                     /locus_tag="VD694_03960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11892.1"
                     /translation="MKIWVVMAKVEELQARSVDKVFDSKEKAEQYSEGQNRKEMTQFV
                     NIGGIDRSIEEWDVE"
     gene            2066..2281
                     /locus_tag="VD694_03965"
     CDS             2066..2281
                     /locus_tag="VD694_03965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11893.1"
                     /translation="MLTYWINKRLILDVGGAIQQTTKRKNYKLQNEDGTHNSNAYYTS
                     GYKSNILQLIYAEAGEQINLQSASLYQ"
     gene            2513..>2868
                     /locus_tag="VD694_03970"
     CDS             2513..>2868
                     /locus_tag="VD694_03970"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11894.1"
                     /translation="MKDYAPHWQSKKHEEGRQQLQERKEKLSSSTKRILIVDDDQDIT
                     FTFKKAFEEANRISGSNKISFHVDAYNDPLVAFSEFKPDFYDLMLIDINMPKMNGFDF
                     CVKVLEQDVNPRFCFMS"
BASE COUNT         1034 a          433 c          526 g          875 t
ORIGIN      
        1 ctcgatactt gcgtcaattc ctattgtggg agcaacgtat gatttaccac cgaaattttc
       61 tacaatacga gccagctcgg atcccctccg gctgcccgtt attgcgatag ttaatcctgt
      121 tagcgacacc ggttataatc atatcccttt tgaagatatt ttggagtcat tataaaactg
      181 aataattcct attctataca ttcactttgt atattataac cctttgaagt tatttaaagt
      241 agttgaagca ctaccactcc taactcatcc caccaagaat gagatttgtt gtctaacgta
      301 gataacgtac tggataagag aataatccaa agccattaac tttgtactga tatatgattt
      361 ttgagtggca agatattaaa atttgttgca gaactatact acttatagta aagggtttaa
      421 ctcaggcttg aaccaaatag gaaaaacaat gtagttgtta ttctaatcgg tagtgacacc
      481 aagtccaaat ttctatctgt tactaaaaat gtataaccac gcttattatt tagtatatta
      541 ggaagcctta tacttaaagc tgattggctg agctcataat ctaatattat gtaaaaagta
      601 ttgcatgaat agtctattat tattcagtat tgacggtaaa ttgcagggtc aagtagagtg
      661 gaaagaggaa aaacgaggac aacaaaaaat tcctatataa ataacctgtc agagatgcag
      721 tccgcattat tcattttgaa atgtttatct gaaggaaaaa atgaagaata tttaatccaa
      781 cgatttgaca atgatgagca gttggttaga atctggatga atcttctcac cgaactaaaa
      841 cttcttgtgg taaatgtagt tggagaatat gttataacca ataaaggcaa agattatctt
      901 caaaagtata atcctcattg gtaacgtaat taaaggtaaa aactcgtttt tcagattatg
      961 tacataaatt gcaattattg tagagatgat tattatttgt tatattgaca agtcatttta
     1021 taactaaggt cgtatagaat agatacttta ctaatagaag cataatatga gaaaacagag
     1081 caatttacac ttataggaca aggagaagta ccctaaggat ttttgaaaac taaattaact
     1141 acctcttatc ttcccatttt tgttatattt atgactagaa ggagtatgta atatattcag
     1201 ggaacacttt tctattctaa atatagatac atacagtgaa aatctagaag taacaaacta
     1261 tcaacagatt ttctcgtggc cgagagtaag gaatcgaagg atatgattca acttcaaaag
     1321 tttgtgaaaa gcattgaaga tatagttttc attactaaag caatacaaaa gtataggaaa
     1381 gccggatccg atatttcaac ataacttagg ctgcagaaaa agttgtaaga tatactttgt
     1441 ggatgatatc cagatttatc ccattgggat aagaatgttg ttgtatggat tgggttatga
     1501 ggttgagatt cctaagagag ttgagcttgt tcatgattgt tctgtcatac tccttgcatc
     1561 ctatgtattg gttatactct gcaaattcat tcccctcttc caaatcgttg gagtctacca
     1621 aacatgagag cattcaattc ttcatcctat tacataccta catcttttta gattaaccct
     1681 agtcaaattt acacagaaga taataaacaa aagagtgttt aatcataaac cgtaattatt
     1741 tctaagcata gttggtaact agaattaata ggatacagaa tggttatact ggggaatgac
     1801 atattgggat accaacaatc aactatgcat acagaaaata acgggtaatt aaccatgaaa
     1861 atatgggtag tcatggccaa agttgaggaa ctacaggcta gaagtgttga taaggtattc
     1921 gattcaaaag aaaaagcaga acaatattct gaaggtcaaa ataggaagga gatgacacag
     1981 tttgtaaata ttggagggat tgaccgttct atagaagaat gggatgtcga ataatatttt
     2041 ataataatca gaccagactg ccagtttgtt aacatattgg ataaacaaga gattgatatt
     2101 ggatgttggt ggcgccattc aacaaacaac aaagaggaag aactacaaac tccagaatga
     2161 ggatggtact cataatagta atgcatatta tactagtgga tataagagta acatattaca
     2221 actaatttat gctgaagcag gagagcagat aaatttacaa tcagcctccc tttatcaata
     2281 gccagtaata gatctatttc tgatggtgga ggaaaaacaa tttagagtat ggatgtcagt
     2341 taacgaacat cagtatgcag tatagactcc caaaaaatgt caaataaggg gacaaaacaa
     2401 agaatttcac caaaaactca gtaagaattc gcttaaaagt ataatattgg caatgttgat
     2461 atataagttc tattgaagaa atcaatcgtt tcaggggaag atagatagat acttgaaaga
     2521 ttatgctcct cattggcaga gcaaaaaaca cgaggagggg aggcagcaat tacaggaaag
     2581 aaaagagaag ttatcttcct ctaccaaacg aatactaatt gtagacgatg atcaggacat
     2641 tacatttaca ttcaaaaaag ccttcgaaga agcaaatcgg attagtggca gcaacaagat
     2701 ttcttttcac gttgacgcct ataatgatcc tcttgtagcc ttctcagaat tcaaacctga
     2761 cttttatgat ctaatgctaa ttgatattaa tatgcctaaa atgaatggtt ttgatttttg
     2821 tgtaaaggta ttggagcagg atgttaaccc tagattttgc tttatgtc
//
LOCUS       DASPFX010000189         3204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1716977, whole genome shotgun sequence.
ACCESSION   DASPFX010000189 DASPFX010000000
VERSION     DASPFX010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1716977"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..1900)
                     /locus_tag="VD694_03975"
     CDS             complement(68..1900)
                     /locus_tag="VD694_03975"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HXW11895.1"
                     /translation="MSKEKSSIVLVVVIILSVTILAAIIFSFLTYQSYVTNSNEIQDI
                     SEQNIRNTALAKAADLSHLTVNKLNSVIGSLELVSSSPNMREQDIEEAKILLAKAQNS
                     TEDVVDSYYWFDSNGTSIWSSSFENDTIEDRFNGFSIASYTYFKEVRDTLSPVYGDTQ
                     EWVDLEPKIFIIYPILDSENATATESNSNQIFKGVVLATINPTVLGELLENQLSPLTN
                     ANISLVNSNGLMILKGTPEYFGINLLDPTAKSLSEQFVTDVNNENNLIEEIRSALLNS
                     RTFSIEVVASDQDLTVAYSPVLLDGKRLLTIILALPHIPEASVENLVLLQRNFGLAAM
                     ITIGIISFGVFYGVTNWHKEMRKQVQKHKMELEQTAEKLAIIDQGQKEFIDIAAHEFR
                     TPIQSVLGYSEFIRSSLGNFDDYFDNLFKNAKRLEKITNDILDVSKIDSENFELSKTD
                     FDLTEVIKKTVSNHEKDASDRNVKIIFEQKKEEAKTINADESKILQVIDNLLSNALDF
                     TKDGTITMKVYDLSIRSDDKENNDTQESVAIEVKDTGSGINEEIMPRLFEKFSRRSDS
                     GAGLGLYISKKIVDMHGGKFWAQNNRGTKGATFTFTLPTKEKTM"
     gene            complement(2199..2603)
                     /locus_tag="VD694_03980"
     CDS             complement(2199..2603)
                     /locus_tag="VD694_03980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11896.1"
                     /translation="MKQAQVEVFVFPALVSAILLTMVLSTQGVSARGCEDNSCDSLVN
                     IDGINIGKIDENKILNTEDINKILGNDKTKLENVQTNGADGVDDVKNEKIKIKDLNVL
                     LDGDDKAPKIEVLPDNVTVIKIKDFKILIPKK"
     gene            complement(2711..>3204)
                     /locus_tag="VD694_03985"
     CDS             complement(2711..>3204)
                     /locus_tag="VD694_03985"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HXW11897.1"
                     /translation="CDVGGGQGHLLCSILVKYPQLKGTVLELENVINNKDLLWAPKMV
                     VQDRCTYIAGNMFNDVPKADAYIMKMILHDWSDDECVTILSKIYHRCIEEGTIFIAEH
                     MVPGPEKSHFAKLFDIHMMCVASGRERTAEEYADLLKRSGWSNIETSYAHSGQMGVVR
                     ASK"
BASE COUNT          914 a          620 c          523 g         1147 t
ORIGIN      
        1 atgtatttta gtatggcctg gatatttaag tgaactgata gtctaaatta atttggaact
       61 ggaaatatta cattgttttc tctttagttg gcagtgtaaa ggtaaatgtg gcgcccttgg
      121 tacctctatt gttttgtgcc caaaacttac ctccatgcat atccactatc ttcttagaaa
      181 tatacaatcc caatccagca ccggaatcag atctcctaga aaacttttca aataaacgtg
      241 gcattatttc ttcatttatc cctgatcctg tatcctttac ttctatggca actgattcct
      301 gagtatcatt gttttcttta tcgtctgatc gaattgataa atcataaacc ttcattgtaa
      361 tagtcccgtc tttggtaaag tctagtgcgt tggaaagaag attatcaata acttgcagga
      421 tttttgattc atccgcattt attgttttgg cctcctcctt tttttgttca aatattattt
      481 tcacatttct atctgaggca tccttttcat gattgctcac tgtcttcttt atgacctcag
      541 tcaaatcaaa atctgtcttt gacaattcaa agttttcact atcaattttt gacacatcta
      601 atatgtcatt tgttattttt tcaagcctct ttgcattttt gaaaaggttg tcaaaatagt
      661 catcaaaatt tcctagactt gacctaatga attcggaata gcctaaaact gattggatag
      721 gggttctaaa ttcatgggct gctatatcaa taaattcttt ctgcccttga tctattattg
      781 ctaatttttc cgccgtctgt tccaattcca tcttgtgctt ttgcacttgt tttctcattt
      841 ctttgtgcca atttgtaact ccataaaaga ctccaaaaga gattatacct attgttatca
      901 tggcggcaag accaaaattt ctctgcagca aaaccaagtt ctctactgat gcctcgggta
      961 tatgtggtag agctaaaata atcgtaagta ggcgtttacc atccaagaga actggtgagt
     1021 atgcaactgt gagatcctgg tcacttgcca caacttcaat cgaaaacgtt ctagagttta
     1081 acagggcgga tctaatctct tctatcaggt tattttcatt gttaacatca gtaacaaatt
     1141 gttcgcttaa ggatttggct gttgggtcaa gtaagttaat tccaaaatat tccggagttc
     1201 cttttagaat cattaaccca tttgagttga caagagaaat gttggcgttt gtgagcggag
     1261 agagttgatt ttccaaaagc tctcccaaga cagtaggatt gatagtggcc aatacaactc
     1321 ctttaaaaat ttggttgctg ttactttcgg ttgctgtagc gttctcacta tctaaaatgg
     1381 gatagatgat aaatattttg ggctcaagat ctacccattc ctgggtatct ccataaactg
     1441 gtgaaagtgt atctctgact tctttgaaat atgtatatga tgcaatagaa aatccattaa
     1501 atctgtcctc tattgtgtcg ttttcaaagg aacttgacca aatgctggtc ccattgctat
     1561 caaaccaata gtacgagtcc actacgtctt cggttgagtt ttgagccttt gctaacagta
     1621 tttttgcttc ttctatatct tgctctctca tgtttggaga tgaggaaacc aattcaagac
     1681 tcccaataac tgaatttaac ttgttaacag taagatgaga aagatctgct gccttggcca
     1741 aagcagtatt cctgatattc tgttcagaaa tatcttgtat ttcgtttgag tttgtcacat
     1801 aggattggta tgttaaaaat gaaaatatta tcgcagctaa tatggtaaca gataatatta
     1861 tgactacaac tagcacgata gatgatttct cttttgacaa gctttaaatt gttatcgttt
     1921 ggcagccaat agacagtaga taattacctt acttgccatt aaagaaggta gaccattaca
     1981 gtatcaatca tattgatttc tgattatgat tgattattga aatgccactg attcttcgtc
     2041 gatctcaatc atgacttgga cagttaatat tctctttaat aatctcgagt aagtgtattt
     2101 taagtaaatc tcatttttgt taattacagg tttgggaatg tgagaattta gtgattacat
     2161 ttacctgaac ctaaaacgtt atcattgaat ctactgcatt atttttttgg aatcagaatt
     2221 ttaaagtcct taattttaat gacagtgaca ttgtctggaa gaacttcaat ttttggtgcc
     2281 ttgtcatcac catctaacag aacgttaaga tctttgattt ttatcttttc atttttaaca
     2341 tcatcaacac catccgcacc attggtttga acattttcga gctttgtctt atcgttgccc
     2401 agaatcttgt ttatgtcctc tgtattcaat attttattct catcaatttt tccaatattt
     2461 atgccatcaa tgttcacaag actatcacaa ctattgtcct cacaaccacg tgctgacacc
     2521 ccttgcgtag aaagaaccat tgttagcaaa attgcagata ctaaagccgg aaacacaaac
     2581 acttcgactt gggcttgttt caatggcatg aatattcttg tatggttatt attttatata
     2641 tatacttctg tctgttcata aacaaagtat ctttctaata tgctgggcgc attcaagtta
     2701 tctccaaata tcatttgctg gctcgtacta ctcccatttg ccctgaatga gcgtatgaag
     2761 tttcgatatt actccaccca gaccttttta acaaatcagc atattcttcg gctgttcgtt
     2821 ctctcccaga agcaacacac atcatatgta tatcaaaaag tttggcaaaa tgtgattttt
     2881 caggtcctgg aaccatatgt tcagcaatga aaattgttcc ctcttcaata catcgatgat
     2941 aaatctttga tagtatcgta acacattcat catcggacca atcatgaaga atcatcttca
     3001 taatataggc atctgctttt ggaacatcat taaacatgtt tcctgcaatg tatgtgcatc
     3061 tatcttgcac taccattttg ggcgcccaca aaagatcttt attgttaatt acattttcta
     3121 gctctagtac agtacctttg agctgaggat acttgacaag tatgctgcaa agcaagtgac
     3181 cttggcctcc tcccacgtcg cata
//
LOCUS       DASPFX010000190         2508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_757860, whole genome shotgun sequence.
ACCESSION   DASPFX010000190 DASPFX010000000
VERSION     DASPFX010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757860"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(479..634)
                     /locus_tag="VD694_03990"
     CDS             complement(479..634)
                     /locus_tag="VD694_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11898.1"
                     /translation="MILSNDELRATCVIFFNSYALSSTSAPSTVPALQAGLSYVVSPS
                     VVSLVDI"
     gene            654..1013
                     /locus_tag="VD694_03995"
     CDS             654..1013
                     /locus_tag="VD694_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11899.1"
                     /translation="MDPIRLAAVGDRYPYHTSTQGVVLYKKRGSAHSFLKLHWTVLSS
                     PSSSCKASNEGELQTKKSLKESLSYDSENTLVSCTEEEAFDFLYSLYGSNRNSDVTDE
                     EIDQILKIYLPNKSISR"
     gene            complement(1506..1892)
                     /locus_tag="VD694_04000"
     CDS             complement(1506..1892)
                     /locus_tag="VD694_04000"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HXW11900.1"
                     /translation="MYTKTRNYHWNVIGSHFNDRHKFFQEQYEKLDELIDEIAERTRT
                     LGGMSIATLTEFVKESRLKESPGEYPGDLKMISKLLSDHEQIIRSLRSDLEICDTKYH
                     DIGTNDFLTGLMEIHEKMAWMLRAHL"
     gene            complement(1900..2022)
                     /locus_tag="VD694_04005"
     CDS             complement(1900..2022)
                     /locus_tag="VD694_04005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11901.1"
                     /translation="MTLRTLEKTKGDLNIGISQQNREGVVKILNTLLHTDTVYR"
     gene            2264..>2508
                     /locus_tag="VD694_04010"
     CDS             2264..>2508
                     /locus_tag="VD694_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW11902.1"
                     /translation="MKQPRQQHRSRSEIIASILATANGNRIRQTEILYKTYLSHTLLK
                     DYLLFLIENDLIEYTTGDRTFKTTEKGMRFLRMYSQM"
BASE COUNT          805 a          457 c          443 g          803 t
ORIGIN      
        1 cctaccagac gctttctgta agttatgtta atggtatttc cttatttggt gccttttgga
       61 taccgattct ttttgcttcc ataatcaatc aatttggata cgcgagcgct tggattgtgg
      121 gaggaattat attccttgca ttggtcattc ctatcttaac attagaagaa taattttccg
      181 tctagttaag gtgaagttgc tgatatgaaa agcggctcag atcatcttgt gtcacagtaa
      241 tttgttcaaa tcatggtcat gaaaaaccca ttatcaaggt atcgaaatgt aatttaatcc
      301 accatggagt ggcatacaag tatcgttaaa tgagaactag atatctaaac aaatagggca
      361 caattattag ttataacata attaacatgg cttgactcaa tgactaccga taattagatc
      421 aataaatatg ctcattcata actattaaca agaattagac caatatgtat ttggtgagct
      481 agatatcaac taacgataca acagaagggc ttacaacata tgacaatcca gcttgcagtg
      541 caggaactgt tgacggtgct gacgtacttg aaagcgcata cgaattaaag aaaatcacac
      601 acgttgcgcg taattcgtca tttgaaagta tcaaatatga tatcatagac ctggtggatc
      661 caatacggct ggctgcggtg ggtgaccggt atccatatca tacttctact caaggtgtcg
      721 tgctttacaa aaaacgaggt agtgcacata gcttcttaaa gctgcactgg accgtattat
      781 cgtcgccgtc gtcgtcttgc aaagcaagta atgaaggaga gctccaaacc aaaaagtctc
      841 ttaaggaaag tctgtcatat gattcagaaa atacgttagt gtcctgtaca gaagaagaag
      901 cgtttgactt tctatacagc ttatatggct ccaataggaa ttcggacgtt actgatgaag
      961 aaatagatca gattctgaaa atttatcttc caaacaagtc tatttcaaga taagtcctgt
     1021 aatattccac gaacaggttc aaagaagatt ctattttagc gttagtaaaa ccagttaact
     1081 aatttgcagc gtattattcg gccacttcat ttaagccgtt tcgattatgt tataaaaatc
     1141 tgtcatgaat tcatatttca atcctgtatt cgctttaaat ccaatacgaa aaatgattgt
     1201 caataaaaca tgaaatcatg tttagcttcc aataaattta ttaaaattat tcgtagataa
     1261 cttatgtcgt tgtctattga tgagctgcaa gagataagaa ttgtatttca aggtttacaa
     1321 actttgtatg aaacgtacct tcctaaggca cccctagtga aactgacaga agttcagaac
     1381 gaggtggata tcagttgatc atgcatagtt tgaacaatat aagtacagta agcatgtttg
     1441 ttcactcaat tcatcatagg aggtaacatg tgccttctta tgccataaag ccgtctataa
     1501 atatcctaaa gatgagccct caacatccag gccatttttt catggatttc catcaatccg
     1561 gttaagaaat cgttcgtacc gatatcatga tactttgtat cacatatttc gaggtctgaa
     1621 cgtagactgc gaataatttg ttcgtggtca cttaataatt tagaaatcat cttgaggtcc
     1681 cctggatact ctccaggact ttctttgagc ctggattcct tgacgaattc agtcaacgta
     1741 gctattgaca tacctccgag tgtcctagta cgctctgcta tctcatcgat caattcatca
     1801 agtttttcat actgctcttg aaaaaatttg tgtctgtcat taaagtgaga acctatcaca
     1861 ttccaatgat aatttctcgt tttagtatac aagatatgct catctgtata cagtatctgt
     1921 atgcagtaat gtgttcagga tcttgacaac tccttctcta ttctgctgag aaattcctat
     1981 attcaagtca ccctttgtct tttcaagtgt tcttaatgtc attttattac accattctta
     2041 tggttttaat gtataaaaaa gatcccagac ctagttcgag ctgagaggaa tcaaatctca
     2101 tttgggatgc ctaatctgaa tatcttaaca tactaaatga tatgccttgt tgttgatttc
     2161 atcaaccaca gatgagataa aattcttagc gtaaggttat agaaaacttt tatagaattc
     2221 ataatacatt tattaatatt tttctaatat tatattaatt acgatgaaac aaccaagaca
     2281 acaacataga agccgatcgg agattatagc gtctattctt gcaacagcaa acggtaaccg
     2341 gataaggcag accgaaatac tctacaaaac atatctttcg catacgctcc taaaggatta
     2401 tttgttgttc ttgattgaaa acgatttgat agaatatact actggggaca gaacgtttaa
     2461 aactactgag aagggcatgc gttttcttag gatgtattca cagatgaa
//
LOCUS       DASPFX010000191         3417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1001171, whole genome shotgun sequence.
ACCESSION   DASPFX010000191 DASPFX010000000
VERSION     DASPFX010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001171"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VD694_04015"
     CDS             <1..236
                     /locus_tag="VD694_04015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11903.1"
                     /translation="KELTKTCSTSQDELGLYIPKISGRSNADMLYACCPVMRFICWSY
                     YCIVRFIRNFSLPFLLLGDVLRGHLQHGQTYPS"
     gene            complement(546..1058)
                     /locus_tag="VD694_04020"
     CDS             complement(546..1058)
                     /locus_tag="VD694_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11904.1"
                     /translation="MSPSHSNADMPMGGLQQRIGDYDVSVKTNPPQPEVGTPVKILIA
                     IAAINGDDISGIPVDITIKGDRSVLSGLNRPIAVPYGHYTYQYKFEKPDIYSLVIDIY
                     DIYFTGRLVSFTFPIEVKSTFFGLWGSSDTMGYVLIPSIVIIVSIILVFIIWQKHKTK
                     LKSIPHDGKG"
     gene            1709..2053
                     /locus_tag="VD694_04025"
     CDS             1709..2053
                     /locus_tag="VD694_04025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11905.1"
                     /translation="MVVIFSGKMMALFFACVLTVQVGIMMMPLANSNEVRAEDKSTSI
                     SCDGIGTCEKTECVDGVCNTSQTNSSSIVDSPSSPLSKENDEESQSANNTTSSSLTPF
                     EQRLSLREELKR"
     gene            complement(2269..3273)
                     /locus_tag="VD694_04030"
     CDS             complement(2269..3273)
                     /locus_tag="VD694_04030"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11906.1"
                     /translation="MNEHTVGSADAILERYDNNPILTANEENWWESKSVFNCASLYDG
                     KKVHLLYRAVGEYKDYVSRIGYAFSNDGYTFMRNSDMATEPVEEYERYGIEDPRLFQL
                     ESRTYFTYVVPSNYVRNRPTVSTALATTEDYHEFKRLGLITPRLHDDKDVVYFSTKMA
                     PTSGDLKSSNGSDGKCYFSLHRPSSWIGASYGVDKPSIWLAESFNLTDFQRYSILLRP
                     EQDWEASKVGAGPPPIRTKRGWLVIYHGVSNSKVYRAGAAVLDLNEPNRILGRCKHPI
                     LEPDKVYETTGDVNNVVFPSGACVIDGTLFLYYGGADRVCCLATANLDSLVKYVLEGN
                     "
BASE COUNT         1068 a          704 c          625 g         1020 t
ORIGIN      
        1 acaaggaact aaccaagacc tgttcaactt cacaagatga gctaggctta tacataccaa
       61 agatatcagg acgaagcaat gcagatatgc tatatgcttg ttgtccagta atgcgattca
      121 tatgctggag ttattattgt attgtacgtt tcatacgtaa tttttccttg ccctttctat
      181 tgttgggtga tgttctcaga gggcacttgc agcatggaca aacatatcca tcatgaaata
      241 aatatacttc gcatctacgg caatatttta tcccaagact atagcttcct atactcgaac
      301 ccattcttgt acatatgttg cgacaaggca aaatgaaaca taataaagaa caatttgaat
      361 atcctaaaag tattgtaata cctagctgtg agggggagta tcttcctcct attaccgttg
      421 aacatccatt aatatttgcg catgcactgt acaccatcat tttatttgaa gtgaagttaa
      481 ctacaaatta acatctcaaa ttaactaata ctgctgaaat caagatcatg ttatggttgt
      541 aagcctcatc ccttaccgtc gtgagggata cttttcaact tggtcttgtg cttctgccat
      601 attatgaaaa caagaataat tgagactata ataacgattg aaggtattag aacataaccc
      661 atcgtatcgg aggaacccca taagccaaaa aaagtggact tcacttcaat tgggaaagta
      721 aaggagacta gacggccggt aaaatagata tcatagatgt cgataaccaa actgtaaatg
      781 tctggttttt cgaatttgta ctgataagta taatgcccgt atggaacagc tattggtcgg
      841 ttcaagcccg acaacacact tctatcacct ttaattgtta tatccaccgg aattccactt
      901 atgtcatcgc cgttgatggc ggctatggcg ataagaatct taacaggtgt accaacttct
      961 ggctgagggg gattggtttt cacactaacg tcataatctc ctatcctttg ttgcaaacct
     1021 cccatcggca tatctgcatt ggaatgagat ggtgacaata taagaatcaa taatccaaat
     1081 acaaatccta acgtacaagt cctcgcaagc ttctcatagt cagaatgaat atggcaatta
     1141 ctatggacag aattaagcca agcccggaca cgtaaagaaa tgcaaatggt caaaaaattc
     1201 tcaacaacag atttacaatt cctcaaagga cttgcagtaa tttcacccta caccgtatat
     1261 ttttcttgtc cttcagcaca cccttcccag taaaaaatat tcgacaaaag aatatgccta
     1321 cattaatcta tctctgcaac gacatccact ttattaaact cagtactaag gtcgctagtt
     1381 ggcaatgtgg tgtccttacc gattatttta gttcatctag gtgagcaatt ccctagttga
     1441 tgccaaaaag ggtaggacta atccatagac catcaaaatc agcttacagc tgaatgaagc
     1501 tcaaatacag aaattttctg acaattttgg tagttgtgca ttgatttact ttaagatctc
     1561 gagtttggtt caaatctgga cccttaatat attcagcaag tccgatcaaa aagtattcat
     1621 gtaattaggg actatgaaaa tacacttcat atcctctata tcaaattagg ctaacccaat
     1681 taaactaaat cattgctcca aaagaatcat ggtcgtgata ttttctggaa aaatgatggc
     1741 actattcttc gcttgtgtct tgactgttca agttggaatc atgatgatgc ctttggcaaa
     1801 ttcaaatgaa gtcagagctg aagacaagag taccagtatt tcatgtgacg gtattggaac
     1861 ctgtgagaaa accgaatgtg ttgatggggt ctgtaatacc agtcagacaa attcttcaag
     1921 tattgtagat agcccatcgt ctccgctgtc taaggaaaac gacgaagaat ctcagagtgc
     1981 gaataacaca accagctcat cattgacacc ttttgaacaa cggctgagtc tacgagaaga
     2041 gttgaagaga taaagtattt acatccctat tttttccatg cagattacaa taccacaaag
     2101 taaatcaaaa gggtagctaa caaaatgcac tatttatttc gtaactcatt tcgtgtgaga
     2161 attgcgatgg aataaaaaga cgtacccgtt attcaaatac aagagatgtt aagagcttaa
     2221 ttaatcaaca acagatgact agtcaattaa ttcagatgac tactacaact aattgccctc
     2281 taaaacatac ttaacaaggg aatcaagatt agcagtggca agacagcaca ccctgtcagc
     2341 tcctccatag tagaggaaga gagttccgtc tatgacgcaa gcgccagacg ggaatactac
     2401 gttattaaca tcaccagttg tctcatatac cttatctggt tctaggatgg gatgtttaca
     2461 tcgtcctagt attctattgg gttcattcag atcgaggact gctgctcccg ccctgtagac
     2521 cttagagtta cttacgccat gatatattac taaccaacct cgtttagttc taataggagg
     2581 cggaccagct ccgacttttg aagcttccca atcttgttca ggtcgtaaga gaattgaata
     2641 tctctggaaa tctgttaggt taaagctctc tgctagccat atacttggtt tgtccacacc
     2701 atatgacgcc cctatccaag aactgggtct atgcaaggaa aaatagcact tcccatctga
     2761 tccgtttgat gattttaaat cccccgatgt cggggccatc tttgttgaaa aataaacgac
     2821 atccttatcg tcatgcaatc ttggtgttat gagtcccagt cgcttaaatt catgatagtc
     2881 ttccgttgtt gccagtgctg tagaaacagt tgggcgattc ctaacgtagt ttgaaggaac
     2941 aacgtaagta aagtacgttc tagattccag ctggaacaaa cgaggatctt cgatgccata
     3001 tctttcatat tcctcaaccg gttcggtagc catatcacta tttctcataa atgtataccc
     3061 atcattgcta aaagcatatc ctatccttga aacatagtct ttgtattctc caactgcgcg
     3121 atagagcaaa tggacctttt taccgtcgta taacgatgca cagttaaata cagattttga
     3181 ttcccaccaa ttctcttcat tcgcagttag aataggattg ttatcatatc tttcaaggat
     3241 tgcgtctgct gatcccaccg tatgctcgtt cataaggtct acgccagtaa tttataatgt
     3301 tataccacta aagattggtt agtttgattt tgaagtttgt catagttgga tgttagtgag
     3361 taaacatgtc taatctttct tagagtgcca gctgtaaagc cgctgcactc tgcttaa
//
LOCUS       DASPFX010000192         2744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_156127, whole genome shotgun sequence.
ACCESSION   DASPFX010000192 DASPFX010000000
VERSION     DASPFX010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156127"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VD694_04035"
     CDS             complement(<1..323)
                     /locus_tag="VD694_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11907.1"
                     /translation="MKVANVILFEIGLCALEDSNLIYKRKFDNPEVEYSSIIQGQKNY
                     IVDLIPKLRNYGLVRVNNKNLIQVLQDESFNVKLMSDSRQNEINQNKLDLMIKFGLAE
                     NREELG"
     gene            complement(411..536)
                     /locus_tag="VD694_04040"
     CDS             complement(411..536)
                     /locus_tag="VD694_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11908.1"
                     /translation="MSEYEGGTFRCKVCAKEFLTKNECDVHYEDTHGEEVANIGE"
     gene            complement(570..1388)
                     /gene="lsrF"
                     /locus_tag="VD694_04045"
     CDS             complement(570..1388)
                     /gene="lsrF"
                     /locus_tag="VD694_04045"
                     /EC_number="2.3.1.245"
                     /inference="COORDINATES: protein motif:HMM:NF006081.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxy-5-phosphonooxypentane-2,4-dione
                     thiolase"
                     /protein_id="HXW11909.1"
                     /translation="MDWGLKNRLSGIINQQNGKGVMLAVDHGYFLGPTERLENPEKTI
                     KPLLRYADSLMLTRGVLRRCVAPESNVPIVLRVSGGTSILGEDLSKETITTSIEEAIR
                     LNASCLALSIFVGSKYEHQTLSNLSKLVDEGEKYGIPVLAVTAVGKEMARDSRYLGLA
                     CRIAAELGAHLVKTYYCENFQEVVEGCPVPVIIAGGKKLPEKEALNLTFNAISDGASG
                     VDMGRNIWQSDQPVEMIQAVRSIVHDGLSVEDAFNSFLIKKGIPSSELETLNTR"
     gene            complement(1436..2461)
                     /locus_tag="VD694_04050"
     CDS             complement(1436..2461)
                     /locus_tag="VD694_04050"
                     /inference="COORDINATES: protein motif:HMM:NF028222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HXW11910.1"
                     /translation="MLTVKVIDSKVTLVESDLPDVNDDEILVRMQSCGICGSDLEKVY
                     GKYGMKSLRVGHEPAGVVIKVGKNQKKFKEGDRVFVHHHVSCYACRYCLQGNYTMCNN
                     YQTSNIEPCGLSEQFIVPKWNIEHGGVLKLPDSISYDEAALIEPFACCIRGLNKISIK
                     HGDNVAILGAGPTGVMHTLLAKFWGANNIVVSDVNDFRLKFVEKYGVTTVNLNSQNLE
                     EAVNSHTEGLGVDVTILATGSMTAFESSLKITRRGGKILLFGVPSVDSKFDMNLNSIY
                     SNEQIIIPSYGASEIETNQALSLMADKLIDLLPLVTHRFQIRESHIAFKCAHEGLDAM
                     KVLIVTS"
     gene            2606..>2744
                     /locus_tag="VD694_04055"
     CDS             2606..>2744
                     /locus_tag="VD694_04055"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW11911.1"
                     /translation="MILLVSDMDRSMKFYRDVLELPVKNTSAEWVEFFSSGTVVALHP
                     SK"
BASE COUNT          799 a          593 c          424 g          928 t
ORIGIN      
        1 cctaattctt ccctgttctc ggctaaccca aatttaatca ttagatccaa tttattctgg
       61 tttatctcat tctgcctaga atctgacatg agtttaacat taaaactttc gtcctgcagg
      121 acctgtatta gattcttatt attgactctc accaggccat aatttcttaa tttagggatt
      181 aaatccacta tgtaattttt ttgtccttgg atgatggaag aatattccac ttctggattg
      241 tcaaatttcc tcttatagat taaatttgaa tcttcaagag cacagagacc gatttcaaac
      301 aaaatcacat ttgcaacttt caactagatc tgattttaag ttaatttggt cactaaaaaa
      361 tctaccatta ttctcctgac ctttactttg gtgatttatc ttggcgccaa ttattcgcca
      421 atgttggcaa cttcttcacc atgagtgtcc tcataatgca cgtcgcattc attcttcgtt
      481 aaaaattctt ttgcgcatac cttgcatctg aatgtacctc cctcatactc tgacatgtta
      541 aaacatgaaa ttaaatccac taaaaaaatt tatcgcgtat tcagagtttc caattcactt
      601 gaggggatcc ccttttttat tagaaatgaa ttgaatgcat cttcgacaga taatccgtca
      661 tggactatgg atctaactgc ctgaatcatt tctactggct ggtctgattg ccaaatattt
      721 ctacccatat caacgcctga tgcaccatca cttattgcgt taaaagtcag atttaacgct
      781 tctttttctg gtaatttttt acctccagca ataattacgg gaacaggaca gccttctact
      841 acctcttgga aattttcgca gtaatatgtc ttgaccagat gagctcccag ttctgcggcg
      901 attctacagg ccagtccaag atacctagaa tccctggcca tttcttttcc aacagcagta
      961 accgctaaca ctggaattcc gtatttttca ccttcatcta ccagtttaga aaggttactg
     1021 agggtttgat gttcgtattt actccctaca aagatagaca aagccagaca tgacgcattg
     1081 agccttattg cttcttcaat tgatgtggtt atagtttcct tcgaaagatc ttcacctaaa
     1141 atactagtac ctcctgaaac gcgtaaaact atgggaacgt tggattcagg agctacgcat
     1201 ctccttaaaa cacctctggt gagcatcaaa gagtccgcgt atcttaaaag tggtttgata
     1261 gtcttttctg gattttccaa cctttctgta ggccccaaaa aatatccatg atcgactgct
     1321 agcatgactc cttttccatt ttgttggtta attattccag ataagcgatt ttttaatccc
     1381 caatccatgc tagaatacct cattatacaa gttatttatg ttttgatcaa ttgacctagg
     1441 acgttactat cagaactttc atggcatcta aaccttcgtg agcacacttg aaagcaatat
     1501 gtgattctct aatttgaaaa cgatgtgtta caagtggcaa caaatctatt aatttgtctg
     1561 ccattaatga tagagcctga ttcgtttcta tttctgaagc gccatagctt gggatgatta
     1621 tttgttcatt tgaataaatc gagtttaaat tcatgtcaaa ttttgagtcg actgaaggaa
     1681 caccaaaaag aagtattttt ccacccctac gagttatttt aagcgaactt tcaaatgccg
     1741 tcatacttcc tgttgccaat attgtaacat caacacctaa cccttcagtg tgactattga
     1801 cagcctcctc taggttttgg ctattcaggt tcaccgtagt gacgccatat ttttcgacaa
     1861 actttagtct gaaatcattt acatcagaaa ccacaatgtt attagctccc cagaactttg
     1921 ccaacaatgt atgcatcaca ccagtaggtc ctgctcccaa aattgctacg ttatctccat
     1981 gttttattga aatcttattt agtcctctta tgcaacacgc aaatggttca attagagccg
     2041 cctcatcata tgaaattgaa tcaggaagct tcaaaacgcc tccatgctca atattccatt
     2101 ttggaactat aaattgctcc gataatccgc atggttcaat attgctggtt tgataattgt
     2161 tgcacattgt gtaattgcct tgcaaacaat acctacaagc atagcaactt acatgatgat
     2221 gaacaaaaac tctgtctcct tccttgaatt ttttttgatt tttaccaact ttaataacaa
     2281 cgcccgcagg ttcatgtccc actctcaaag acttcattcc gtattttccg tagacctttt
     2341 ctaaatcaga tccgcaaatt ccacatgatt gcatcctcac caatatttcg tcatcattta
     2401 cgtcaggtag atctgactca accaatgtta ctttactatc aataactttt acagtgagca
     2461 tttgatatcc actttcatga catatctaaa ttaaaaatat tatataattt acgccaacat
     2521 ggcttaattc caatccaaaa tcgataagtt attaattcgg agtcaattat tttggagtaa
     2581 tttgacattt agaagacttg gagcagtgat tttgctggtc agtgacatgg atagatcaat
     2641 gaagttttat cgcgatgtac ttgaattacc agtaaaaaat acttcagctg aatgggtaga
     2701 attcttttcg agtggaaccg tagttgcatt gcatccatcc aaaa
//
LOCUS       DASPFX010000193         2432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1869762, whole genome shotgun sequence.
ACCESSION   DASPFX010000193 DASPFX010000000
VERSION     DASPFX010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1869762"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1251..1523)
                     /locus_tag="VD694_04060"
     CDS             complement(1251..1523)
                     /locus_tag="VD694_04060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11912.1"
                     /translation="MTLAIKSPRHDGYKSLDEELYHKINTRLTILVIIVSCLVVFTAI
                     MISGTAALVTSFSSEEKAMNMPPTDLGLSSDGLPVDGHQWLSIQPP"
     gene            complement(1793..1951)
                     /locus_tag="VD694_04065"
     CDS             complement(1793..1951)
                     /locus_tag="VD694_04065"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HXW11913.1"
                     /translation="MIRWTLTGTAKKELFGIPASDKPITFVGFDLFRLANGKIVEMWQ
                     QFSVGRWS"
     gene            2232..>2432
                     /locus_tag="VD694_04070"
     CDS             2232..>2432
                     /locus_tag="VD694_04070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW11914.1"
                     /translation="MQEKAEGPESTRNQQFRSAGQSPKTTSIDITSPNFKRILVAYDG
                     MQLSKRALGYAAYISQISNSEIV"
BASE COUNT          791 a          455 c          428 g          758 t
ORIGIN      
        1 tgtttgacaa ataaaaggga gggagccatg agtaaaacat agatcaacaa aagaaggatg
       61 ctattctgca attcatgttc caaaaataaa ttccgtaatg tcaaatataa tctaaactct
      121 ttctaaattt tgttaatcca gcaacatgct acccgcatga tgaaacatta gaaatatcaa
      181 gatttcccaa aaatacacca agatgtgaag cataataaca tcatttaata acatcattca
      241 tggctgcaac aacatatttt atacgtttaa tccgaaaact gatttttcgt aagataatgc
      301 ctcaaagttg agattcaatt cctttgcatg ctggtaagaa cttactattt cttattcggt
      361 aggcaatctt gcaatttcat tgcattggga tgaccaaaat ggtacagatt ccgcgcacaa
      421 atacttggat atgtcctatc tgcagctctc tagattggca ctatccgaac caacaagaat
      481 cacaaacaga atcagaagag tatgaaatat cataattgtc tctaacattc aaccgcttcc
      541 aacggcttat cctaaacgag tgacggagga gttctaatta atggatctta aacatattat
      601 gaaacaaaac agaattttga ttttctatcg tgttctgcaa atcaaagcca tcatcaacat
      661 agtggctgtg gttgtggaca ctaattaatc cattttttat tttcttcatt acaatttaat
      721 tttcaaatta tataatctga gctaatcgta actgcggcga acagtcagga gagatttttg
      781 atattggatc cggtatccca gtacgtcttt ttataattcc aataacatta ttctactggc
      841 tagcgtggta catagagttt cgatggatcg ctttgtttgt caatccaatt ggtggccgat
      901 aagtactgaa cagggcgtac cattgtctgc tcgtggaaca aaaaatcatc gacaataaaa
      961 actatagatc gaaacattcg agtcacttaa ttattctctt ttatattcga tattgtaatc
     1021 aataaaatcg tgatgggatc gatgaatcaa tcatattaag agaattggtc tggggaagaa
     1081 ttctagtcat aacccccgat cactttatgc tattctttaa agatatacga agtacttgag
     1141 cttggtctaa ttatctaatg tataaactgc gttatctgga tatgtcactg tgaatttgta
     1201 tacatctgat ggtagactag ctaatgcgta atgaccctct gaatcagcta ttacggaggt
     1261 tgaatagaca accactgatg tccatctact ggcaaaccat ctgaactaag cccaagatct
     1321 gttggtggca tattcattgc tttctcttca gaggagaatg atgttacgag agcagctgtt
     1381 ccagaaatca taattgctgt aaataccacc aaacaactta cgataatcac gagaatagtt
     1441 aggcgagtgt ttatcttgtg ataaagctct tcgtctagtg atttgtatcc atcatgacgt
     1501 ggagatttta ttgctaatgt catctaatca cgatcacctc ccagtttagc cataatatgt
     1561 ctcgatgatt gaatgacgat atgtctattg gaagttgtag ctcggacatc aaaattatta
     1621 tgaagagatc ttgcttaatt cttcttgtat agtagtttga ttaaaaatca ggtcgaagca
     1681 ttactactat taacttctaa tcttcgagtt tcttatccag actgctatgt aattttatgg
     1741 acttgaataa tagagcttgg aatcaaccga agtcaattag gtactattag gactatgacc
     1801 acctaccaac actaaattgc tgccacattt caacaatttt cccattagca agtcgaaaga
     1861 gatcaaaacc tacaaaagtt attggtttat cgcttgcggg tattccaaaa agctcttttt
     1921 tggctgtacc ggtcagtgtc caccgaatca aaacttttat catcttttga tatttatagt
     1981 attcaggtta agtgcacgct ggtaagtaca ggacacctat agtatcatca tgtgtaagat
     2041 ccggtacact ctcgattaca gcagaagcaa ctttctttgc actctccgga ccatgtgaca
     2101 gctctgaggg cctgaatttc tccaaataaa atcaggcgct cgaatactac tgaattcgtc
     2161 agtccaactt aatctgattg ctctagaata caggaaagta tatacttgct ctttggattg
     2221 cctaaaatag tttgcaagaa aaggcagaag gacctgaaag tacaagaaat caacaattta
     2281 gatcagcagg ccaatctcct aagactacta gtattgatat aacttctcca aattttaaga
     2341 gaatactagt tgcgtatgat ggaatgcaat tatccaagag agcattgggc tacgcagcgt
     2401 acatatcaca gatttcaaat tcagagatag tt
//
LOCUS       DASPFX010000194         5507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_507209, whole genome shotgun sequence.
ACCESSION   DASPFX010000194 DASPFX010000000
VERSION     DASPFX010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_507209"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VD694_04075"
     CDS             <1..437
                     /locus_tag="VD694_04075"
                     /inference="COORDINATES: protein motif:HMM:NF013341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RIO1 family regulatory kinase/ATPase"
                     /protein_id="HXW11915.1"
                     /translation="WLLLNIDTAKKEYDILTYLKDSSNSFPTPLYRSFHCIVMDAIYG
                     NRLSDIENLNDPELVLEKIIDSIAIAYRKGYINGDLNEYNILIDDDNVFILDWPQAVK
                     VDAINADTVLTRDVKNILKYFSKKFDVEEDSDKITNYIKRNA"
     gene            complement(466..1611)
                     /gene="metK"
                     /locus_tag="VD694_04080"
     CDS             complement(466..1611)
                     /gene="metK"
                     /locus_tag="VD694_04080"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HXW11916.1"
                     /translation="MARRYLFTSESVTEGHPDKICDQVSDSILDELISQDPDSRVAVE
                     AMTTTGIVFVAGEVTSNARIDAQDVVRKTLKDIGYNGLKHGFDGNSCSVLTSIHEQSP
                     DISMGVSKNENGVQGAGDQGLMFGYATNETPEYMPLPITLAHKLTMKLAFVRKERILD
                     WMGPDGKSQVSVIYEDSVPKKIDTVVVSTQHTEDISISQVREEVISKVIKPVCEDLID
                     NSTKFLVNPTGRFVIGGPVGDTGLTGRKIIADTYGGMGRHGGGAFSGKDPSKVDRSAC
                     YMARYVAKNIVAAGLASKCEVQLAYAIGVADPVSIMVDTFNTGKVDEEKIESQVREIF
                     DTTPQGIIETLRLKRPIYKKTAAYGHFGRNEPDFTWEKSDKSGLFRT"
     gene            complement(1648..1896)
                     /locus_tag="VD694_04085"
     CDS             complement(1648..1896)
                     /locus_tag="VD694_04085"
                     /inference="COORDINATES: protein motif:HMM:NF013582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0000398 - mRNA splicing, via spliceosome
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="U6 snRNA-associated Sm-like protein LSm6"
                     /protein_id="HXW11917.1"
                     /translation="MSSSPQQPKRPLTILQRSLNMKVSVRLKNELEYRGRMNNVDSYM
                     NLILLDAEEFNGANPVANYGKVVIRGNNVLFIKIEKDL"
     gene            1997..2695
                     /locus_tag="VD694_04090"
     CDS             1997..2695
                     /locus_tag="VD694_04090"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11918.1"
                     /translation="MTTITTGSEAIDGLLGGGIRTGLVTNIVSDSRDARSGLCYSLCV
                     NAAEHHKDSSIIFGDTQGFFRPEKILSFIKKKQESDSILHQIRSIRLMSTNVQMVLVN
                     YALHLHPVLIIIDNFSYLFLNEKKKSLSIQFRLRKHLHDLAIYALENDIAVVITNSIS
                     SKRENKRSEDIFEKRILSFNELLNNIISNLTHVSLELKAVKTDEPRYSAGLLKPATST
                     KSYFMVRPDGLHDC"
     gene            3046..3375
                     /locus_tag="VD694_04095"
     CDS             3046..3375
                     /locus_tag="VD694_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HXW11919.1"
                     /translation="MDKLEKLIEMQRNLAGVLASPRYPSKMEERISYLCTAITHESIE
                     LQRLTNWKWWKTPTEFDLEEAKEELIDIWHFILQATIELDMTADDVVKYYSKKNKINK
                     KRKKLNY"
     gene            complement(3369..3857)
                     /locus_tag="VD694_04100"
     CDS             complement(3369..3857)
                     /locus_tag="VD694_04100"
                     /inference="COORDINATES: protein motif:HMM:NF016124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11920.1"
                     /translation="MIYEKMENCIGEICKRLLPIKHERYVGNGSKIAVCTLSSISLLK
                     EISNDTKLMNELAIVGRLLSENKGIDEIINYCIVNKQVEHLVICGRDSTGHRAGDSLI
                     ALSKNGMTKEGIIINSQSPRPQLHSSNQDVEIFRNRITIHNLIEESDLNRIRSYLNDL
                     FQ"
     gene            complement(3888..4289)
                     /locus_tag="VD694_04105"
     CDS             complement(3888..4289)
                     /locus_tag="VD694_04105"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HXW11921.1"
                     /translation="MNQVIFTEGEIKFLCSNEICRIATCNNDLPHVTPVSYVFDEGKF
                     YFATDYNTLKYNNLKKNNRISLVVDTTENNRNTAIVTRGTTTFIHKGRKFEILYNMFH
                     EKFDWVKKDPWKQGEAPFVEVIPKNKVSWGF"
     gene            4436..4984
                     /gene="cobO"
                     /locus_tag="VD694_04110"
     CDS             4436..4984
                     /gene="cobO"
                     /locus_tag="VD694_04110"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HXW11922.1"
                     /translation="MDKEASSQDGMVIVYTGNGKGKTTAALGVALRALGHGFKVCMVQ
                     FIKGEWHYGELNSLKKLEPDFELIVAGKGFIGIIDDDHAFGEHVRAAKTALSIVEQKI
                     SQGSFDVVILDEINYAVNLGVLKLEDVLKIVQSRPKKVSLILTGNHAREEIISLADLV
                     TEMREIKHPYKKGIKAKKGIDF"
     gene            5041..>5507
                     /locus_tag="VD694_04115"
     CDS             5041..>5507
                     /locus_tag="VD694_04115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HXW11923.1"
                     /translation="MVTDIKQLPEAGDLVIATVKEVTGHGAYVALDEYQDLTAFLHVS
                     EIATGWIRNIERYVRPKQKTVLKVIRVDKSRVEVDLSLKQVSREERKSKLIEVKKSEK
                     ASAFMHMIKTKTSMNDDKIKELQDIVLQKFDYLYDMFEAVAFKGIDSIKSLDIS"
BASE COUNT         1800 a          975 c          964 g         1768 t
ORIGIN      
        1 gttggttact cttgaatatc gatactgcaa aaaaagaata tgatatattg acatatctta
       61 aagattctag taattctttt cctacccctc tatatagatc attccactgc attgttatgg
      121 atgcaattta tggaaataga ctatctgata ttgaaaatct taatgaccca gaactagtgt
      181 tagagaagat aatcgacagt atagcgatcg catatcgcaa gggatacata aacggtgatc
      241 tgaatgaata caacatactc attgatgatg ataatgtctt tatcctagat tggcctcaag
      301 ccgttaaagt tgatgcaatt aatgccgata ctgtcctgac aagagatgta aaaaatattc
      361 taaaatactt ttcgaagaaa tttgatgtcg aagaagattc ggataaaata actaactaca
      421 ttaaacgaaa cgcatgaaaa gattgagagt atacgcaaac aaagcttacg ttctaaacaa
      481 tcctgatttg tcgcttttct cccaggtaaa gtctggctca tttcttccaa aatgtccata
      541 tgcagcggtc ttcttataaa ttggtctttt aagacgtaac gtttctatta tcccttgagg
      601 tgtagtatca aaaatctctc ttacttgtga ttcaattttt tcttcatcaa cttttccagt
      661 attgaaagtg tcaaccatga tcgaaacagg atcggctact cctattgcat atgctagttg
      721 aacttcgcat tttgaagcca agcctgctgc aactatattc tttgcaacat atcttgccat
      781 gtaacatgca gacctatcta ccttagaagg atccttgcct gaaaaagcac ctcctccatg
      841 tctgcccata cctccatacg tatcggcaat tatcttcctc ccagttaatc cggtatcacc
      901 tacaggacct ccaatgacaa atctgccagt cggatttacc agaaattttg ttgaattatc
      961 tattagatct tcacaaactg gttttatgac ttttgaaata acctcttctc taacttgaga
     1021 tattgaaatg tcttcagtat gctgggtaga aacaaccaca gtatcaattt tctttggaac
     1081 tgaatcttca tagataacag aaacctgaga tttcccatca gggcccatcc aatccagaat
     1141 tctttctttt ctcacaaatg ccaacttcat ggttagttta tgcgccaaag tgatgggcaa
     1201 tggcatatat tcaggggttt catttgttgc gtatccgaac attaatcctt gatcacccgc
     1261 tccttgtaca ccattctcat ttttggaaac acccatagat atatcaggac tctgctcgtg
     1321 gatggaagtt agaacagaac aactgtttcc atcaaatccg tgtttcaatc cattatatcc
     1381 tatatccttc aaggtctttc taacaacatc ttgagcgtca attcttgcat ttgaagtgac
     1441 ttctccggca acaaatacaa tgccagtagt agtcatagcc tcaactgcaa ctctagaatc
     1501 tggatcctgg gatattaatt catctagtat tgaatcagat acttgatcac aaatcttatc
     1561 tgggtgacct tcagtcacgc tttcagaagt aaaaagatag cgtcttgcca tttttggtta
     1621 cgataaatcc caagaatgtc tcttttttta gagatccttt tctattttaa tgaatagtac
     1681 attgtttccg cgaataacta ctttcccata atttgcaaca ggatttgcac cattaaattc
     1741 ttctgcatct aacaaaatca aattcatgta tgaatcaaca ttattcattc ggcctctgta
     1801 ctccagctca tttttaagtc tgacagatac tttcatattt aatgaacgct gcaaaattgt
     1861 taaaggtctt tttggttgct gtggagatga tgacatttta ggttttcact tttgttttca
     1921 aaaaataaga tcgacaataa aaagtttctc ccaagttctc ccactttgta tataagtaat
     1981 tgtagagttt aattttatga ccactatcac aacagggtca gaagcaattg atggtctact
     2041 tggaggcgga attagaacag gtctggttac gaacattgtc tctgattcca gagatgcacg
     2101 atcaggttta tgctactctc tctgtgtgaa cgctgcagaa catcacaaag attcatcgat
     2161 aatatttgga gacacacaag gattttttag accggagaaa attctctcat ttatcaagaa
     2221 aaaacaggaa tcagactcta ttcttcatca aataaggagc attaggttaa tgtcaacaaa
     2281 tgttcaaatg gtacttgtaa attatgcctt acatctacat cctgtcctca taatcattga
     2341 taattttagt tatttatttt tgaacgaaaa gaagaaatca ctatcaatac agttccgact
     2401 cagaaagcat ttgcatgatc tggccatcta tgcattggaa aacgacattg cagttgtaat
     2461 tactaattca atttcttcaa aaagagaaaa taagagatct gaagatattt ttgaaaaaag
     2521 aatactttca tttaatgaat tattgaataa tattatttcc aatctcacac atgtgtcttt
     2581 ggaactaaag gcagtaaaga ctgacgaacc aagatactca gccggactac tgaaaccagc
     2641 gacgtccaca aaatcctatt tcatggtaag gcctgatggt ttgcatgatt gctgataatt
     2701 atattcgtgt tcatatgaat atcatttgga acaatagcga ctctttgaat ttccggataa
     2761 ataatggaat ttgactgaat actctaagga ttagataata agatttacat ttctattttc
     2821 aataaatata ttattttgaa acaaattgta taaataatca ttaaaacttt ataatttcag
     2881 ctttataatt atgatgggag aaacatttat taagattttt tctacgttat tacataaaaa
     2941 gatgctaatg gagaacttcc atatccattt acgataggaa gcacgactcc attccatctt
     3001 cacggaaggt taaaatctat attcaagaat ttttatgaat ggtaagtgga taaactagaa
     3061 aaattaattg aaatgcaaag aaatctagca ggtgtcttgg catcaccaag atatccttca
     3121 aagatggaag agagaatttc atatctttgc acggcaatta cacatgaatc tattgaactt
     3181 caaagattga cgaattggaa atggtggaag acccccacag agtttgacct tgaagaggca
     3241 aaggaagaat tgatagatat ttggcatttt atacttcagg caaccatcga attagatatg
     3301 acggccgatg atgtggtaaa gtattattca aaaaagaaca agataaacaa gaaaagaaaa
     3361 aaattgaact attgaaataa atcattgaga taagatctta ttctattcaa atcagactcc
     3421 tcaattaggt tatgtatagt aatgcgattt ctaaatatct ccacatcttg attggacgaa
     3481 tgcaactgag gccttgggct ttgtgagttg attattattc cttcctttgt cattccattc
     3541 ttggagagtg caattaatga atctccagct ctatggccag tgctatctct gccacatatg
     3601 actaaatgtt caacctgctt atttacaatg cagtaattga ttatttcatc aattcctttg
     3661 ttctctgaaa gcaatctgcc cactatcgcc aattcattca ttaatttagt atcattcgaa
     3721 atttccttca atagactgat actggaaagg gtacatactg caattttact tccattccct
     3781 acatatcgct catgcttgat aggaagtaag cgtttacata tttcaccaat acaattttcc
     3841 atcttttcgt aaatcaagat cgaatcaata ccaaactatg acttatgtca gaatccccaa
     3901 ctaaccttgt ttttaggtat tacttctacg aacggagctt cgccctgttt ccatggatct
     3961 tttttaaccc agtcaaattt ttcatgaaac atattgtaca agatttcaaa ttttctgcct
     4021 ttatgaataa atgtggttgt tcctcgtgtg actattgcag tatttctgtt attctcggtt
     4081 gtgtctacaa ctagggatat tctattgttc ttttttagat tattatactt cagagtattg
     4141 tagtccgtag caaagtagaa tttgccctca tcaaaaacat atgagactgg agttacgtgt
     4201 ggtaagtcat tgttgcatgt cgcgatcctg caaatttcat ttgagcagag aaatttgatt
     4261 tcaccttccg taaaaatcac ctgattcatg actggttatt atagtgatac caatttatca
     4321 tttcttaggc tcgataatat gtaatcttat agaatcaaat tccgcctatt agctagacaa
     4381 gttgaataat atctaagtag cccaatgata ttaattttca ttgcggtgat tatgaatgga
     4441 caaggaagcc tcttcacaag atggaatggt tattgtatat accggaaatg ggaaaggtaa
     4501 gacaacagct gcacttggcg ttgcactaag agctttaggt catggattca aagtttgtat
     4561 ggtccaattc atcaagggtg aatggcatta tggtgagctc aatagcttaa agaagctaga
     4621 accagatttt gaattaatag ttgcaggcaa gggctttatc ggcataattg atgatgatca
     4681 cgcttttgga gagcatgtaa gggctgcaaa gactgcattg agtatcgttg agcaaaaaat
     4741 ttcacagggt tcttttgatg ttgttatctt ggatgaaatt aactatgctg tcaatcttgg
     4801 agtgctaaag ttagaagatg tcctgaaaat agttcagagt cgtccaaaaa aagtatcgtt
     4861 aattctgact ggaaatcatg cccgtgaaga aataatttca ttggcagatc tggtcactga
     4921 aatgagagaa ataaaacatc cgtacaaaaa aggaataaaa gcaaaaaagg gcattgattt
     4981 ttgaaaaaaa tcatattata agcaaactta aagtatagta acaaggtgcg tattttctag
     5041 atggtcacag atatcaaaca acttcctgag gcaggagatt tagttatagc aacggtaaag
     5101 gaagtgactg gtcatggtgc ttatgtggcc ttagatgaat atcaagattt gacggcgttt
     5161 ctgcatgttt ctgaaattgc aactggatgg attaggaata tcgagagata tgtaagacca
     5221 aagcaaaaga ctgttcttaa agttattagg gtagacaagt caagggtaga ggtagacctt
     5281 tctctaaaac aggtatcaag ggaagaacgt aaatcaaaac ttattgaagt aaagaagagt
     5341 gaaaaggcgt cagcctttat gcacatgatc aaaactaaaa cgagcatgaa cgacgacaaa
     5401 attaaggaac tgcaagatat tgttttgcaa aaatttgatt atctatacga catgtttgag
     5461 gcggtagcat tcaagggcat tgactctata aagtcgcttg atatttc
//
LOCUS       DASPFX010000195         3512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_190722, whole genome shotgun sequence.
ACCESSION   DASPFX010000195 DASPFX010000000
VERSION     DASPFX010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190722"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..769
                     /locus_tag="VD694_04120"
     CDS             <1..769
                     /locus_tag="VD694_04120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11924.1"
                     /translation="WMDTILREGKVVYSQACWLMALTSFSNLLFVLEKENEAQKLRQM
                     ASRLVDSIEKMMWSEKNRCYVDVNSEISVEDDPPGILYQDMVFYVFAMTELLPHIVPN
                     ISKISKFDMYPKDEKNESLINSARAMEIKKRLLLALRSLRDRTWLGDIPLVTEKPLLK
                     TGPWILQSNEYHNYTHWPWITAVELLTRFRFGQTEECNILLSNLFNQNEQNSKSDHDN
                     IFYEWLNPTTKTGGGAYPFRTGISAYRLTSFEIMSKV"
     gene            959..1126
                     /locus_tag="VD694_04125"
     CDS             959..1126
                     /locus_tag="VD694_04125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11925.1"
                     /translation="MSDRNEGNENIESAQKNQKKVGAAEENPETTGPTENLREEAAEM
                     VDKDEDSKEHT"
     gene            1430..1555
                     /locus_tag="VD694_04130"
     CDS             1430..1555
                     /locus_tag="VD694_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11926.1"
                     /translation="MSNSIDLYTQLGQVEPEPEEPGDVEPEPAPEPGQAEDIKED"
     gene            complement(1738..1959)
                     /locus_tag="VD694_04135"
     CDS             complement(1738..1959)
                     /locus_tag="VD694_04135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11927.1"
                     /translation="MHADNQEILSLISRCRDIRDVSKKTKLLDYINQLLPAESKIRLP
                     SLITGDGIDNMLSWIEVKISPPVYGLATP"
     gene            complement(2217..2471)
                     /locus_tag="VD694_04140"
     CDS             complement(2217..2471)
                     /locus_tag="VD694_04140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11928.1"
                     /translation="MDVRIFIVGIAIGLVLSGGTAVFAQSNTTGNSTGIGSAEELSKL
                     TSNNSLSNLSSMTTFNDTGATTFNDTGTNATSNQTNNMSG"
     gene            complement(2593..2913)
                     /locus_tag="VD694_04145"
     CDS             complement(2593..2913)
                     /locus_tag="VD694_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11929.1"
                     /translation="MVIPSVIERTLPVRSYDIVINSGDGKEIWKKTDQVPQGGRGPQS
                     IVLDNYDIGNVTISISNIVPDPTIVDLLNQQSNNTNQFAVLNQTESMLPTDSAKFQTT
                     ILVI"
     gene            complement(3318..>3512)
                     /locus_tag="VD694_04150"
     CDS             complement(3318..>3512)
                     /locus_tag="VD694_04150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11930.1"
                     /translation="FCRMHTSMASRAGSIIVTIIAAIVIIAILIFLVNVLAPIIVGII
                     IILIIIGVVYWIYKQVRTSA"
BASE COUNT         1187 a          578 c          638 g         1109 t
ORIGIN      
        1 ttggatggat acaatattgc gtgaaggtaa agttgtatat agtcaagcgt gttggttgat
       61 ggctttgaca agtttttcta atctattgtt tgttcttgag aaagaaaacg aggcccagaa
      121 acttcgacaa atggcttcac gacttgtaga ctcgattgaa aaaatgatgt ggtctgaaaa
      181 aaatagatgt tatgtggatg tcaactcaga aatatcagta gaagatgacc cacctggtat
      241 tctatatcag gatatggtat tttacgtctt tgcaatgact gaattattac ctcatatagt
      301 acctaatatc tcaaaaatta gcaaatttga catgtatcca aaggatgaaa aaaatgaatc
      361 cttaattaat agtgccagag ccatggaaat aaagaagaga ttgttacttg cattgcgatc
      421 tcttagggat aggacttggc ttggtgatat tcctctggta acagagaaac cacttctaaa
      481 gaccggacca tggatactgc aatcaaacga atatcataat tacactcatt ggccatggat
      541 aacagcagta gagcttttaa cgaggtttcg ttttggccag actgaggaat gtaatatact
      601 gctatccaat ctttttaatc agaatgagca aaatagtaag tctgatcatg ataatatttt
      661 ctatgaatgg ttaaatccca caactaaaac agggggaggt gcgtatcctt tcagaaccgg
      721 gatttctgcg tataggttaa catcatttga aatcatgtca aaagtgtagt attgaccagt
      781 ctcaaaaata tttattttgc aaatcgacat atccgaaaaa gacacttggt gtcttgacga
      841 aataaggctt tcattctgac taattgtatg caactagaca attaactaca ggaaaaaaaa
      901 ttattctttt tcagttaatc atgatagata cttaactcaa gttgcactaa agtctataat
      961 gagcgataga aacgaaggga atgaaaatat tgaaagcgca cagaaaaatc agaaaaaggt
     1021 aggagctgca gaagaaaatc cagaaactac aggtcccaca gaaaacttga gggaagaagc
     1081 agctgagatg gtagacaagg atgaagactc gaaggagcat acataacctt ccaatttttt
     1141 atacaagttc aagtcggtag ccatttgatt aaataccttt ttggagatac taacagttag
     1201 aaacgatcaa aaatgagaat gattgattgt cttgtcgttg aatctagttc agactagatt
     1261 attcttaata tcataacata gcaaaacgca attaatttag agtatattaa tggttgctag
     1321 tgcgattagt cttgaattat cgtcggagta cacaaaattc aatgttttag taggatgatg
     1381 caacaaaaat ttgtaaatcc ataaatactt ttgagacgtc aataagataa tgtcaaattc
     1441 aatagatttg tatactcaac taggacaagt agaacctgaa cctgaggaac ccggagacgt
     1501 tgagcctgaa ccagcacctg aaccaggaca agccgaagac ataaaagagg attagtcaca
     1561 tcaatttttt ttattttgag tgggctaaaa gtgcctcaat tctaaatatg tagagttaaa
     1621 ttagtaacat ttagctatta aacacagcaa gttctggctc tgaaataacc taatttttat
     1681 gataggctat ctaataaaaa aaaataaaat aaaattgctg gattattcta tcaaaagtca
     1741 cggagttgct aggccgtaga ccggtggtga aatcttgact tcaatccagc ttaacatatt
     1801 gtcaatgccg tcgcctgtga taagcgaagg cagtcttatc tttgattctg ctggcaacaa
     1861 ctgattgata tagtctaaaa gtttcgtctt tttcgaaaca tctctaatat ctctgcacct
     1921 actaatgagg ctgagtattt cttgattatc tgcgtgcatt ctattagtat tatgaacatt
     1981 aaagtttaag aatcttaacg ttattcatca gtttgtcaaa gtatcaaaag attttatcat
     2041 ctaccctgat atcaaaataa caaaggtaaa gatttattct tacctttatt gaggtggact
     2101 tccgaaccta gtcgaaaatc cacgtacata cttgcagtac tctgaatgat taagaagaat
     2161 aaactttgtt acttttagaa agaatccatc taatacttac caaaaaaata tggatatcag
     2221 ccagacatat tgtttgtctg gtttgatgtt gcatttgtgc ctgtgtcatt aaaggttgta
     2281 gcccctgtgt cgttaaaagt tgtcatgctg ctcaaattgc tgagtgagtt attgcttgtt
     2341 agttttgaaa gttcttctgc ggagccgatt cctgtactgt ttcctgtggt attactctga
     2401 gcgaacactg ctgttccacc cgagagaaca agacctatag ctattccaac aatgaatatt
     2461 cttacgtcca tacagcttat cacttctaca tagtattaaa ggattataga ttttttagta
     2521 agaggaaagt gaacgcaaag aaaaaaaata aggaatcatt atatttattg caattaatct
     2581 agggtcaaaa tatcatatga ccaagattgt cgtctgaaat ttcgctgaat cagttggaag
     2641 catggactct gtctgattta aaactgcaaa ttgatttgtg ttatttgatt gttgattcaa
     2701 taggtcgaca atcgtgggat caggtactat attactgatg ctaatagtta cgttaccaat
     2761 atcataatta tccaaaacta ttgattgagg tcctcgtccg ccttgaggaa cctgatcagt
     2821 cttcttccag atctcctttc catcacctga atttattaca atatcatagc ttctgacagg
     2881 taaagttctt tctataacag acggaattac cattccacta cttttattag attcagtact
     2941 ggagaggttc gattcggaat ttggtggtgg cgcacttaga tatggagaag tttatttaaa
     3001 aatgctgtct ctatatttag gccagacgaa atagaagatt gtccagactt catcgccacc
     3061 aaatatgttc ctttatcaga tatccactgt tgaatagggg taattaattt tacctcttgg
     3121 tcgcctttga ctgtcgaatt atttgtagat tgagaataac caatacttgg taacataaaa
     3181 gtaatcaata aaataagaat tatgaagtaa tatttcatga caactataac ccatcattgt
     3241 ttataatagt atcatagtcc actttatttc tcattaacaa gtgatgcgat aaaaaattaa
     3301 tatctaatat tatcttgtta cgccgaagtt ctcacttgtt tgtatatcca atagactacg
     3361 cctatgataa taagaataat gattattcca actatgattg gcgcaaggac atttaccaag
     3421 aatattagta ttgctataat gactattgcc gcaataattg taactataat tgaacctgct
     3481 ctacttgcca tactagtatg cattctgcaa aa
//
LOCUS       DASPFX010000196         2913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1287197, whole genome shotgun sequence.
ACCESSION   DASPFX010000196 DASPFX010000000
VERSION     DASPFX010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1287197"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VD694_04155"
     CDS             complement(<1..199)
                     /locus_tag="VD694_04155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11931.1"
                     /translation="MNINEFISTLPTSVVKGDNVSMPDDVIRRMFKLARLSKKDTFYD
                     LGCGSSNAVYIASTENKVKKAI"
     gene            656..1042
                     /locus_tag="VD694_04160"
     CDS             656..1042
                     /locus_tag="VD694_04160"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HXW11932.1"
                     /translation="MLIGVYISSLNRGVACPDWPLCPNGFAFPSEKFFYEHFHRLVAI
                     VAAIFTGVTLIFIRKSVWKLNKLILIIVTSLIIIQIIMGIFVITSKLNPIIVAVHLST
                     AVTIFSLIFILLRESYLEIKKGRVWN"
     gene            1106..1807
                     /locus_tag="VD694_04165"
     CDS             1106..1807
                     /locus_tag="VD694_04165"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HXW11933.1"
                     /translation="MIKFIFLVGRTLIDEQNYFSFIDSRLLYLLNQFGAKIDNKNYFA
                     IKNDVIKSRKLSKNRVEELVIQICRVLMPNGYEKVILRYILPSIEFAEKHLLYPYDDS
                     VDVLKTLAKNFRIGIIGSNERELSRILKIYGMDRYIKFCVLSCKESNEPNIEIFKLIL
                     NMLGITPSETLLVGDRLDSHVYLANSLGMASIWISNTRFKLQEVTNQYEVPKLTISNL
                     RELSKTVYIQENLNA"
     gene            complement(1815..2264)
                     /locus_tag="VD694_04170"
     CDS             complement(1815..2264)
                     /locus_tag="VD694_04170"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF023395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HXW11934.1"
                     /translation="MNTKIDSNCIFCKIGQKKIDANIIGENENAIAFLDAFPLTPGHT
                     LVTTKNHYAKLQDVTFDEFSNLFELAYKILPFVEEGTSVQGTLLAIHNGKDAGQEIPH
                     VHLHIVPRKPGDGGDAIHSMFDSSHRLENSEMTRVFNSIKEQSQKGH"
     gene            complement(2332..>2913)
                     /locus_tag="VD694_04175"
     CDS             complement(2332..>2913)
                     /locus_tag="VD694_04175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11935.1"
                     /translation="VLILTDQFGSLTPLSIYTISQIGEMNSILSKHEPIDSSIKNEIM
                     KSLTQPRFSLGKIISKYCADFGKEVDAKENIISVYPVGSEGILALVNLSRMSKAHFKV
                     NEVPIKHEEMARFATDEFLVSNSTAAMNGCHLIVTSEDLAPLVLEDLKKHNFNPQIIG
                     FVNDKERPMVTINKNINKFVAAKHITSLFNISA"
BASE COUNT          911 a          487 c          507 g         1008 t
ORIGIN      
        1 ctattgcttt cttgacttta ttctcagttg atgcaatgta aactgcatta ctactcccac
       61 atccgagatc atagaaagtg tccttcttag aaagtctggc aagtttgaac attctcctta
      121 tcacatcgtc tggcatacta acattgtcac ctttaacgac cgaagtcggc agggtagaaa
      181 tgaattcatt gatgttcatt ttacatcgta tatcgggtac aagtatacct acttataaaa
      241 atggaactgt attgttaatt gagtttctag agaataagca aaatgtttga taaagttaat
      301 aatggacatt tgaatattat tcctctgtga actgtgatta ttgtggtcat gtatacatgg
      361 cccatcaatt tgaggagaac aagaatagcc aatactctct gtttgaggta gggagatgtc
      421 taataatggg ctgcagttgc accagttatg ttgataaaat tgaaaagata gacgaagaat
      481 tactatgaac ggaactttct caaaattata tttagtggaa ataatttcta tgattcactg
      541 taccatgagt tggtaaatag aaaatgattc gccaataggt gcattaaaaa taaaaaatac
      601 taaatttttg aatatcttat tacctttcat atctttgagt ctaatttatt cgacaatgct
      661 cattggggtc tatatttctt ctctgaacag gggtgtggca tgccctgact ggccactctg
      721 tccaaatgga tttgcgtttc cttcagagaa atttttctac gaacactttc ataggcttgt
      781 ggcaatagtt gctgccattt ttactggagt aacattgatt ttcatcagaa aaagcgtctg
      841 gaaattgaac aaactgattc tcataatagt tacctctcta attattatac aaattattat
      901 gggaattttt gtaattacaa gtaaattgaa tcctattatt gttgcagtac atctctctac
      961 cgcagtaaca attttttcac ttatttttat actgctcagg gagtcatatt tagaaatcaa
     1021 gaaaggaaga gtatggaatt aatgaataac catgatttca ggaatttgca atattaattg
     1081 tacacttcgg tagtaatggt attcgatgat aaaatttatt tttcttgttg gaagaacatt
     1141 aatagacgaa caaaattatt tttcatttat tgattctaga ctactttacc tactaaatca
     1201 atttggtgcc aagattgata ataagaatta ttttgcaatc aagaatgacg tcataaagag
     1261 tagaaagtta tcaaaaaata gagttgaaga gttggtgatt cagatatgca gggtcctaat
     1321 gcccaatggt tatgaaaaag tgatcttgag atatatccta ccatcgattg aatttgcaga
     1381 aaaacatctg ttatatcctt atgacgattc agtggatgtc ctaaaaactc ttgccaaaaa
     1441 ttttagaata gggataattg gtagtaatga aagagaactt tcaagaattt tgaaaatata
     1501 tggaatggat agatacatta aattctgcgt tttatcttgc aaggagagta atgagcctaa
     1561 catagaaatc tttaaattga ttctaaatat gttgggcatt accccaagcg aaactttact
     1621 tgtaggtgac agacttgact ctcatgttta tcttgcaaat tccttgggaa tggcttcaat
     1681 ttggatttct aataccagat tcaaattaca agaagttacg aaccaatacg aggttccaaa
     1741 attaacaatc agtaatctac gggaactttc caagaccgta tatattcagg aaaatttaaa
     1801 cgcctagttt gaatttaatg acctttttgg gattgttctt ttatgctatt gaataccctc
     1861 gtcatttcac tattttctag tctatgactt gagtcgaaca tcgaatgaat tgcatctcct
     1921 ccatcaccgg gcttccttgg aactatgtgt agatgtacgt gtggtatctc ctgtccagca
     1981 tctttaccgt tatgtattgc tagtaacgtg ccctgaacac tggttccttc ttctacaaac
     2041 ggcaatatct tatatgccaa ttcaaacaga ttgctaaatt catcaaacgt aacatcttgt
     2101 agctttgcat aatgattttt cgtagtaacc agggtgtgtc ctggagtaag tggaaatgca
     2161 tcaagaaaag caattgcgtt ttcattttcg ccaataatat tggcatcaat tttcttttgt
     2221 ccaattttgc aaaatataca attactgtca attttggtat tcatattggt taactgtgcc
     2281 cttgattatt aagattttac ttcaaccaga taaaattctt tatgagaata ttcaagctga
     2341 aatattgaaa agcgatgtga tgtgtttggc tgccacaaat ttatttatat tcttattgat
     2401 agtaaccatg ggtcgttcct tgtcatttac aaaaccgata atctgcggat tgaagttatg
     2461 ttttttcaag tcttccaaaa ccagtggtgc caaatcttca cttgttacta tcaagtggca
     2521 tccattcatg gctgctgttg aatttgaaac aagaaattca tctgtcgcaa atctggccat
     2581 ctcctcatgt tttattggta cttcgtttac tttaaagtgg gcctttgaca ttctggataa
     2641 attgactaat gccaaaatcc cctcagaacc aactggatag acactaataa tgttctcttt
     2701 tgcgtcaact tcctttccga aatccgcgca atattttgaa attatcttgc ccaaggaaaa
     2761 tctgggttga gttaaagact tcataatttc attcttgatt gaactgtcga ttggttcgtg
     2821 cttacttaaa atggaattca tttcgccaat ctgacttatt gtgtagatgc tcaatggagt
     2881 taatgatccg aattggtccg tcaatatcaa cac
//
LOCUS       DASPFX010000197         4213 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_413321, whole genome shotgun sequence.
ACCESSION   DASPFX010000197 DASPFX010000000
VERSION     DASPFX010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4213
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413321"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VD694_04180"
     CDS             <1..202
                     /locus_tag="VD694_04180"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HXW11936.1"
                     /translation="QFTVIGTHVNLASRMEGIAEADQIVISEFTKEKVAQKFNMETIQ
                     IKEEKIKAFEDITEYYVVTAQN"
     gene            273..1427
                     /locus_tag="VD694_04185"
     CDS             273..1427
                     /locus_tag="VD694_04185"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HXW11937.1"
                     /translation="MKPNEIATLSIMLARVVYTINWFNIASIFYLVASDFKENIAMLG
                     IISASFLVSVGLFQIPAGIIAAKYGPRKIAIYGIVIASSAALVTGLASNTSQITLLRF
                     IIGLGMACFFGPSVILISKYLGKESEGLGIGLLNSAHALGGIIGLFGWVILAEHFGWR
                     ASLILSGGLGISTAILLKSTLLAGVDEISNEFKIKVSHVFATLFNKSLIILGITLLGF
                     QAGSSMILTFSVFYFVDHLRINPVYAGLIGSLCLIVALASSPFFGRLYDKIGNARKLL
                     LISGLISGLGLVGFATDSLYVITALILITGFFLSAGFVIVYAKAKEINKAHPQYQTLA
                     VSFVNGVSLFGVFWVPVFFSSVVSSLGYEIAWLLAGLVIIILILPVVRLK"
     gene            1568..2023
                     /locus_tag="VD694_04190"
     CDS             1568..2023
                     /locus_tag="VD694_04190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11938.1"
                     /translation="MSWENKTGNCRYIVLFIMVGIFILPILQQSAFSNHGMEINLKLN
                     DAQFYLPLGKNAQIVKLTTTYSVTDPATVDKQISGTMKIYTANGTLMKTTSIPNGFKA
                     DKNGFQQFVTSLPNSTIQSITTVVVFTDLNKTAALSNSITNNLVLNKTQ"
     gene            2140..2448
                     /locus_tag="VD694_04195"
     CDS             2140..2448
                     /locus_tag="VD694_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH1187 family thiamine-binding protein"
                     /protein_id="HXW11939.1"
                     /translation="MITAEISLVPVGSRSGTSMSKEIALAFDAISGIKDLKATLTPLG
                     TQIQSNSMVDILNAINIAHEAVKSSGIQRIISIVHIDERLDKEQNLDQKVDSVINKLK
                     "
     gene            3026..3439
                     /locus_tag="VD694_04200"
     CDS             3026..3439
                     /locus_tag="VD694_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW11940.1"
                     /translation="MFKRLGAAILLVEDLQKSISFYRDTLELKIKNQSADWVEFQNEA
                     QGAVLALHPTRIKQKGFSNMLVGFNVSNLEPVCKKLEEKGVKFHKRMTQESFGKHAII
                     EDPEGHLISIVEIPPKDELGQIPYYHGFAPVEGLM"
     gene            3693..3986
                     /locus_tag="VD694_04205"
     CDS             3693..3986
                     /locus_tag="VD694_04205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11941.1"
                     /translation="MSEFAFFRFKSANMLTDDEEKNREEIINLTEQVLESKGIECDAK
                     IAKISEDRIREILEEVRKLRRKRKKTYGDSTVINLNDQDKDIENGEGESPYVR"
     gene            4006..>4213
                     /locus_tag="VD694_04210"
     CDS             4006..>4213
                     /locus_tag="VD694_04210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11942.1"
                     /translation="MDKLTNRWLATLGIGVLIFGLALFVLKVPVRTMLIFFAIGIPVV
                     FLWLYADERSRREKREMEQLGKIQQ"
BASE COUNT         1433 a          659 c          809 g         1312 t
ORIGIN      
        1 tcagtttacc gtgataggaa ctcacgtgaa tttagcaagc aggatggaag gaatagccga
       61 ggccgatcaa attgttatat ccgaatttac gaaggaaaaa gtcgcacaaa agttcaatat
      121 ggaaactatt caaataaaag aagaaaaaat aaaagctttt gaagatatta ccgaatatta
      181 cgtagtaaca gctcaaaact agagtttctt tatgaaagta cgaaaagtca ttatatacaa
      241 acaattcaat ttcagagaaa tgtaatcatc ttatgaagcc aaatgaaatt gcgactcttt
      301 caataatgct tgccagagta gtatatacaa tcaattggtt taacattgcg tctattttct
      361 accttgttgc ttccgatttt aaggaaaaca tagccatgct tggaataata agtgctagct
      421 ttcttgtcag tgtaggcctg tttcaaatac ctgcaggaat cattgctgca aaatatggtc
      481 ccagaaagat tgccatatat ggaatcgtaa ttgcctcatc agcagcatta gtaactggat
      541 tagcaagtaa tacttcacaa ataactctgt tgagattcat aattggttta ggaatggcgt
      601 gtttctttgg accaagtgtt attctaattt cgaaatattt aggaaaagaa tcggaaggcc
      661 tgggtattgg gctactaaat tcagcccatg ccttgggcgg aataatagga ttgtttggtt
      721 gggtgatatt ggctgaacat tttggttgga gagcatcact cattttgagt ggcgggttgg
      781 gaatatcaac tgccattctg ttaaagagca cattactagc tggcgttgat gaaataagta
      841 atgagtttaa gattaaggtc tctcacgttt ttgccacgct gtttaacaag tcattgataa
      901 tccttggaat tacactatta ggatttcaag caggttcgag tatgatattg acttttagtg
      961 tgttctactt tgtagatcat ttaagaatca atccagttta cgccgggtta ataggaagcc
     1021 tctgtctaat agttgcactt gcctcatcac ccttttttgg gagactctat gataagattg
     1081 gaaatgctag gaaattattg ttaatttcag gcctaattag tggcttgggt ctagtgggct
     1141 ttgcaactga ttcactatat gttattacgg cattgatcct tataacagga tttttcttat
     1201 ctgctggttt tgtaatagta tatgcaaaag caaaagaaat caacaaagca catccccaat
     1261 atcagactct tgctgtaagc ttcgtaaatg gtgtttcatt atttggggtc ttctgggtcc
     1321 ccgtcttttt ttccagtgta gtaagcagtt tgggatatga gatagcatgg ttgttagcag
     1381 gtttggttat tatcatattg atacttccgg tagttagatt aaaatgaata aattatttgg
     1441 tatcaagatc aaatattcta aactatcagt taattaaaat ccattctgca tattctactg
     1501 ttaatatatg tcgagtttga attaaatgtt caaatgacat tctatgagta aaatggtgaa
     1561 tatcttgatg agctgggaaa ataaaactgg aaattgtcgt tatattgtcc tatttatcat
     1621 ggtcggcata tttatccttc cgattctaca gcaatcggca ttttcgaatc atgggatgga
     1681 aataaatcta aaattaaatg atgcccaatt ttatttacca ctaggcaaga acgcccagat
     1741 agtcaagtta actaccacat attcggttac tgatcctgcc acggtggata aacaaataag
     1801 tggaacaatg aaaatatata ctgctaatgg aactttaatg aaaaccacgt caattccaaa
     1861 tggattcaaa gcggataaga atggttttca gcaatttgtt accagtttac caaatagtac
     1921 tattcaatcc attactaccg ttgtagtatt tactgatttg aataagactg ctgcactatc
     1981 taattcaata acaaacaatt tagttctaaa taaaacacaa taatactact cgtaaatttc
     2041 tattattcaa acttttgtaa aaatagaaaa ataattcttc ctatcaagat tcttgaaaaa
     2101 ggagtactta aataattttt cagagaataa gttaatagaa tgattactgc ggagataagt
     2161 ctcgttcctg taggttctcg ttcaggaaca agcatgagta aggagatagc actcgctttt
     2221 gatgcaataa gtggaatcaa agatctaaaa gcaaccctta ctccactcgg aactcaaatt
     2281 caatcaaata gtatggtgga cattctgaat gcaataaata ttgcacatga ggcggttaaa
     2341 tcttctggaa tacagagaat aatctctatt gtgcatattg atgaaagatt ggataaagaa
     2401 caaaatcttg atcagaaagt tgattctgtc ataaacaagt taaagtgatt gccctcatat
     2461 tcgttttgca aaatggaccg attgactgat tggtttttta ttggatttag tgattaattg
     2521 tgcattaaat aggcatggaa aattttattc caatcgcctt attacctgga tgagagcatc
     2581 tacagatacg acttgacggg ccatgttctg aaagtctgtg gcgacatgta cgataatcac
     2641 atattggctc ttcagcatct ccgactacat ttacataacg atcagaataa ccaagcatac
     2701 ttcaggtact acaacatgac ataataccat ttccagaatt cttgatttgg acgataaatc
     2761 atcttaatta ccattaatgg ataatatttt tcaccatcct agtgtttctc ttcttaaaca
     2821 ctatcgtaga ttgaaagatg tcatattcaa atgatatata gtattgataa acaaagcttt
     2881 ctactagatt ctaacaacat tgtaatatta ggtaaatttt ggtctattaa caagggctga
     2941 taataaatta aagacatcaa gatatgatga aatgaagaat tttgaaccga ataaaattta
     3001 agtcaaaaga aataagaaga tttgaatgtt caaacgactt ggtgcagcta ttcttttagt
     3061 tgaggattta caaaaaagta tatccttcta cagagatact cttgaactaa aaatcaaaaa
     3121 ccagtcagca gattgggttg agtttcaaaa tgaggcacaa ggtgccgtat tggcattaca
     3181 tccaactcgc atcaaacaga aaggattttc aaatatgtta gtaggattca atgtgagtaa
     3241 cttggaacct gtttgcaaaa agctagaaga aaaaggggta aaattccaca agaggatgac
     3301 tcaggaatct ttcggaaaac atgcaattat cgaagaccca gagggtcatt taatttcaat
     3361 tgtagaaatt ccaccgaagg atgaattggg tcaaattccg tattatcatg gatttgctcc
     3421 ggtagagggc ttgatgtaat gttttaactc tcggcaacaa ttaccattcc aagcttttta
     3481 aagaatttag tctgccggat gaaccctata agaggaactg ggatctgaaa caccagaggg
     3541 aagaagtaaa ctaatatcat ctaacgtagg cttgtctttt atttggaata tgttttgcac
     3601 gatacaaaat aatacaagtt taagtcctgg tcttagaaaa tacaatcaaa cattacataa
     3661 taataataag ggtattgcaa tattataatt agatgagtga atttgccttt tttcgattca
     3721 aaagcgctaa catgctaact gacgatgaag aaaaaaatag agaagagatt attaacctaa
     3781 cagaacaggt tctggaatca aaaggcatag aatgtgacgc taaaatcgcc aagatatctg
     3841 aggatcggat tagagagata cttgaagaag tgagaaagtt gcgaaggaaa aggaaaaaga
     3901 cttacggcga ttcaactgtt attaatttga atgatcaaga caaagatatt gaaaatggcg
     3961 agggtgaaag tccctacgtt aggtaggagt tgacttcaaa tggatatgga taaactcaca
     4021 aatcgttggc ttgcgacctt gggtatagga gtattgattt tcggtcttgc attatttgtc
     4081 ttaaaagtac ctgtgcgtac tatgctcatt ttctttgcaa tcggaatacc tgtcgtattt
     4141 ctgtggctat atgctgatga aagatcccgc agagagaagc gcgaaatgga acagttgggt
     4201 aaaatacaac aac
//
LOCUS       DASPFX010000198         4093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_427578, whole genome shotgun sequence.
ACCESSION   DASPFX010000198 DASPFX010000000
VERSION     DASPFX010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4093
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427578"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            766..2088
                     /locus_tag="VD694_04215"
     CDS             766..2088
                     /locus_tag="VD694_04215"
                     /inference="COORDINATES: protein motif:HMM:TIGR00702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HXW11943.1"
                     /translation="MELEPILLRSQKKLKGKVSSRTKTVQETLDTILPVSSNIGVTRL
                     ADITDMDILRIPNFSAVLPGTEDYIWVYSGKGATKLDAKASALMESIERYCSLPSGNQ
                     KRLIQTSYNKVSKVSKTLHPSNVVEPMLFEYDEDMIMDFLTGYDLITNEQIMVPAPLA
                     LFRYSPKPPAVNPFAYHHTNGLASGNVLEEAVCHSLCEVIERDATSLAELNASALPYN
                     TLRSLTKYLSDKGVNIQAIPSTEFVDDNMKYPDVDISNIDFKPVSNLARKFDDSNIPL
                     IIKDITSPIGIPTFNASSIEWITENYGYLAEGHGTHPDARIALLRAITEVSQTRAANI
                     QGARDDLRKISYGNNNSDEKKTWQFMKSKNSIKFSEIKSYVNEDILDDINLILSRLNL
                     NGLNQVIVVDLTNPQIKIPVVRTIVPGLETFKITKAVVGKRGRESFKS"
     gene            2085..2744
                     /locus_tag="VD694_04220"
     CDS             2085..2744
                     /locus_tag="VD694_04220"
                     /inference="COORDINATES: protein motif:HMM:NF019429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HXW11944.1"
                     /translation="MNKPIIYLGPTLPRDEAVKILDADYRDPAKKGDFLMLSQDSDEK
                     KYVGFIDGVFLHDYPPPPIEVYHLATRKNIELVGASSLGALRAVELEKFGMKGIGKIF
                     QMYKNGIINADDEVAVTFVRGSNTLQSEAMIDIRFNLFLAYRKGVITNDTKKRFAKVA
                     KRIYFPFRNYEDLINLTQKQYPAIHDELEKFRAYILQYRDSLKARDAVKLLKYLKTVC
                     E"
     gene            complement(2773..3627)
                     /locus_tag="VD694_04225"
     CDS             complement(2773..3627)
                     /locus_tag="VD694_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HXW11945.1"
                     /translation="MKHATREKKPKNILSKNHSTTNFQDVVTSADILRTLIRRNSVRV
                     VDVRKEDEYKKEHIKTAISIPLAKVLENDTPERIVQLLEQSGISDKTPVVIYDDTFGA
                     LAARVAWTFQYVGHANTSLLETTFTKWKSYGFETEKKINVYPEAKHSIRINNDIFANY
                     DEVEKAKSDQNKILVDSRERLNFLSEHIPGATNLPYTMLGTDESILREPQEIKRFMEN
                     RGISIDDEIITYCGSVGTLSGLAYYALRMGGVKKIRLYSRSFKEWKKLGKPIEEFKDA
                     NFWDLSAE"
     gene            complement(3624..>4093)
                     /locus_tag="VD694_04230"
     CDS             complement(3624..>4093)
                     /locus_tag="VD694_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HXW11946.1"
                     /translation="AEDDLRDSTIKISGCPNSCGQHEIATIGFYGGASRIDGTMTPTY
                     TMLFGGRDGEDGILGKSVMRVPAKRVIPTIIKIIDIYRQERTANESLAMWISKLIEGT
                     TKGNGTAKKLDEVKTALMETISLPSAKDDPDSYMDYGNDVKFSAKTARGECAA"
BASE COUNT         1320 a          752 c          718 g         1303 t
ORIGIN      
        1 atgcaaacga tgtagcacct aatgctaata caaatggacc atacattaag gactgtaaac
       61 aacatgattc tgcaaaggat tgtgcaacag gtcctggcaa taacggagat tttacatctg
      121 gagccgccca cgaaataaac aaaccataac ttttttattt tagaccaata ataaaaatcg
      181 agttcaaata atcaaaaact tcagtttatt aaataattca ttcaactact tcaataaagt
      241 ttaaataaaa ttctgatgct ttttatttta cttagttaat tactcatatg aggaattatc
      301 taatttatta ggtatatacg cctcaaatga ctaaattgac gaagtagccc cggtagagag
      361 tgcactagga ggtgtacatt taatgtatgg ctatcaatga ctagttgtgg gtcagaaacg
      421 gggtacattt accttatcaa ttaattgtat tctctggttt gtgtcaggaa ataagttgta
      481 tgtgaacaat gaccggaaaa taattcatga gttaaatctc aatcttatta aaataatcca
      541 aaattaatga tttagcgtta tcagagatat tgaattgatt caaaattgta tttgtatttt
      601 tgaatagcat caatctaaac tctggatcgg tatgagccct ttgaattata tcatttattg
      661 ctgctagatc actgtcgcta tattgcattc taccctgtaa tacttttcac acatatttca
      721 aattttagta atattgatat tgataccaaa ttattcaaat ctcctatgga acttgagcca
      781 atactgctca gaagccagaa gaaattgaag ggaaaagtat catcaagaac gaaaactgta
      841 caggaaactc ttgatacaat tcttccagtt tcaagcaata ttggagtaac aagacttgca
      901 gacattacag acatggacat tcttcgcata cccaattttt ctgctgttct gcctggaacc
      961 gaggattaca tttgggtcta tagtggaaaa ggagctacaa aattggatgc aaaagcaagt
     1021 gcattgatgg agagcattga aagatattgc tctctaccat caggaaacca aaaaaggttg
     1081 attcaaacgt cttataataa agtctcaaag gtttcaaaaa cactacatcc ttctaacgta
     1141 gtagaaccaa tgttatttga gtatgatgag gatatgatta tggattttct gactggatat
     1201 gatttgataa ctaatgaaca gataatggtc cccgctccgt tggctctgtt tagatactct
     1261 cccaagccac cagctgtaaa tccatttgcc tatcatcata ctaatggtct tgcttctggt
     1321 aacgttttgg aagaagcagt atgccattcg ctctgtgaag taattgaaag agacgcaaca
     1381 agtcttgcgg aattaaatgc aagtgcacta ccatacaata cgctcagatc actgacaaaa
     1441 tacctatccg ataaaggagt aaatatacaa gctattccta gcaccgaatt tgtggatgac
     1501 aatatgaaat atcctgatgt tgacatttca aatattgatt tcaaaccagt ttcaaatttg
     1561 gcaagaaaat ttgatgactc taatatccca ctcatcataa aggacatcac ctctcctata
     1621 ggaataccaa cttttaatgc aagtagcatt gagtggatta cagaaaatta tggatatctt
     1681 gccgaaggac atggaactca tccggatgca agaattgcct tattgagagc aattacagaa
     1741 gtttcccaaa caagagcggc aaatattcag ggtgccaggg atgatctcag aaaaatttca
     1801 tatggaaata acaatagtga cgaaaaaaag acatggcaat ttatgaaatc aaaaaactct
     1861 atcaagtttt cggagataaa atcttatgta aatgaagaca ttttagatga catcaacctt
     1921 atactttcaa ggctaaattt aaacggattg aatcaggtaa ttgtagttga tctcacaaat
     1981 ccacaaataa agatacctgt agtaagaaca atagtacctg gcttagaaac tttcaaaatt
     2041 acaaaagccg tagtcggaaa aagaggaagg gaatctttta aatcatgaac aaaccaataa
     2101 tatatcttgg acctacatta ccaagagatg aagcagtaaa gattttggac gcagattata
     2161 gagatcccgc aaagaaagga gatttcttga tgttatctca ggattcggat gaaaaaaaat
     2221 atgttgggtt tatagacgga gttttcctac atgactatcc gccgccacca attgaagtat
     2281 atcatcttgc tacaagaaaa aatattgaac ttgtgggcgc atccagtttg ggggcactga
     2341 gagccgttga gttagaaaaa tttggaatga aaggaatcgg caagatcttt caaatgtaca
     2401 agaatggtat aattaatgca gatgatgagg tcgcagtaac gttcgttaga ggaagcaaca
     2461 ccttgcagtc tgaggccatg attgacattc gtttcaacct gttcttggcg tacaggaaag
     2521 gggtaataac taatgatacc aaaaaaagat tcgcaaaggt cgcaaaaaga atttactttc
     2581 catttagaaa ctatgaagat ctcataaatt taactcaaaa acagtaccct gcaattcatg
     2641 atgagcttga aaaatttagg gcatatatat tgcaatatag agatagtctt aaggctcgcg
     2701 atgccgtgaa gcttttgaaa tatctaaaaa ctgtatgcga ataaatttct taaattattt
     2761 aggtagcatt gtctattcag ccgatagatc ccagaaattt gcgtccttga attcttctat
     2821 tggcttgccc aattttttcc attctttaaa ggatcttgaa tacaatctaa ttttttttac
     2881 gcctcccatt ctcaatgcat agtatgcaag tcctgacaga gtacctacac ttccacaata
     2941 tgtaataatc tcatcatcta tggaaatacc tctgttttcc ataaatcttt taatttcttg
     3001 gggttctcta aggattgatt catctgttcc taacatggta tagggcaagt tagtagcacc
     3061 tggaatatgt tcactcaaga aatttagccg ttctctggaa tcaactagaa tcttattttg
     3121 gtcgcttttt gccttttcta cttcatcata attggcaaat atgtcattat ttatcctaat
     3181 agaatgcttg gcttcagggt aaacattaat tttcttttca gtttcaaatc cataactttt
     3241 ccacttagta aaagttgttt caagtaagga tgtgttagca tgacctacat actgaaatgt
     3301 ccatgctacc ctagcagcaa gtgcgccaaa ggtatcatca tatataacta ccggagtctt
     3361 gtcagaaatt ccggattgtt ccagaagttg aactatcctc tcaggggtat cgttctcaag
     3421 gactttggca aggggtattg atatagctgt cttgatatgt tcctttttat attcatcctc
     3481 ctttctgacg tccactactc tcactgagtt tcttctaatc aaggttctaa gaatatctgc
     3541 acttgttact acatcctgaa agttagttgt tgaatgattc tttgataaaa tgtttttagg
     3601 ttttttctct cttgtggcgt gtttcaagct gcgcattcac ctctagctgt ctttgcactg
     3661 aattttacat cgttaccata gtccatatac gagtccggat catccttggc acttggcaat
     3721 gagatagttt ccattaaggc tgtttttact tcatcaagtt tctttgctgt tccattgcct
     3781 ttagttgtcc cttcaatcag tttgctaatc cacattgcaa gtgactcatt agcagttcgc
     3841 tcctgtctat aaatatcaat tatttttatt atggtaggaa tgactctttt tgctggcacc
     3901 cgcattacag atttacccag tatcccatct tctccatctc ttcctccaaa caacatcgta
     3961 tatgttgggg tcatggttcc gtctatccta gatgcccctc cgtagaatcc tattgttgca
     4021 atttcatgtt gcccacaaga atttggacat ccacttatct ttatagttga atctctaagg
     4081 tcatcttcag cat
//
LOCUS       DASPFX010000199         5182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_555385, whole genome shotgun sequence.
ACCESSION   DASPFX010000199 DASPFX010000000
VERSION     DASPFX010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5182
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_555385"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VD694_04235"
     CDS             complement(<1..232)
                     /locus_tag="VD694_04235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11947.1"
                     /translation="MSNKSFFQKSVSLFTALLIVTGVIALATYSVSSGESYPYKGKDR
                     KDMTFGAISSIQNNEQSEPSWILSGHWITNIIN"
     gene            complement(329..1348)
                     /gene="kae1"
                     /locus_tag="VD694_04240"
     CDS             complement(329..1348)
                     /gene="kae1"
                     /locus_tag="VD694_04240"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061711 - N(6)-L-threonylcarbamoyladenine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex N(6)-L-threonylcarbamoyladenine
                     synthase Kae1"
                     /protein_id="HXW11948.1"
                     /translation="MLCLGIESTAHTFACSVIEQTDSKFYPNILSDVRDTFKAPEGSG
                     IHPREAARHHASVAIDVLKKSLAISKVDFKDLNLIAYSAGPGLGPCLRIGAVIARSIS
                     SFYDVKLIPINHALGHIELGMSLTNSKDSLVLLVSGGHTMILVFNNSSWRVIGETLDI
                     TLGQLLDQFGRHLGLASPCGAEIERLAHKSSKNYVVLPYTIKGNDVTFSGILSAAKRL
                     ISTNKYAVEDICYSIQQTAFAIITEAVERALSATEKKELLLVGGVSANKELSHMLNLA
                     CQRHKVKFNSCPVTFAGDNGAQIAWTGILSYLKSKNSINILDSFVNQSWRVDSVNVTW
                     RKNLM"
     gene            complement(1354..2553)
                     /locus_tag="VD694_04245"
     CDS             complement(1354..2553)
                     /locus_tag="VD694_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HXW11949.1"
                     /translation="MLIGLIGKANVGKSTFFSASTDNIVNIANYPFTTVNPNLGVCHV
                     RVNCVCTEFGVKDNPVHSICIDGIRFIPVQIIDVAGLVPGAHEGKGLGNKFLDDARQA
                     DALIHVIDISGSTDFEGRPLTPGTGNPIEDLRFVEEEFDLWLVSIIKRDMDNTKEPDS
                     SGQNTVQVMKKRLSGLGITEAALDKVVNKLNLQNKKFKSWTEQEIFDFCQNIRQDVKP
                     VVIAANKADIPTSQINLAKLTEKYTNVLPCASELEMLLRKAVKNGFIHYLPGDSSFEI
                     KENTQLSDKQKQALEIVSNYIKKHGSTGVQEIINLACFSLLEKIVVYPVEDDSKLSDK
                     KGNILPEAYLLNKESTAKDLAHAVHDELGKGFLFAIDVRTKRRLGADHILKNNDVIKI
                     VSATSRK"
     gene            2663..4045
                     /locus_tag="VD694_04250"
     CDS             2663..4045
                     /locus_tag="VD694_04250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11950.1"
                     /translation="MAGIFAIANCSTDKGDLMSYFINSLQMLQHRGKAYWKVIIDNIV
                     SSGVGPFPADGSILKIVENNSNLDFKLGLGYLSKRTPRFKSMNKISVVLDGFFVDIEK
                     LHLHPLVGDAASADSLFKIYTIFKKLLIDKGNPEKACEFLDRHLRGNLTMISNEKIYA
                     YRDSTGFKPLVSGNDRNNSISIMASENSLRIPFPNMNFQDVKAGQLIKMDAESGQEKL
                     LSLPATRTMIDPFEFIRESHVTATIDGKGIYEVRKKIGKVQAEFLSSHTGIDIEAAYA
                     EPDYPRPMTLGFSAEYRHHIPKFDLGEAIINDRYDDSDRMIDFSENISKNKMITSGKS
                     LKYILRHKINQKHIGLIQGTIQTGITAKETIYYLRKAGVKSVSVVVSYVPTVDGRQVG
                     LYTHNRELIAHKYIGQVPSLEELNTKISRELGADKVFYNSPSILSKGIGISEYNLWFP
                     EWVRFLEYEK"
     gene            4066..4389
                     /locus_tag="VD694_04255"
     CDS             4066..4389
                     /locus_tag="VD694_04255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11951.1"
                     /translation="MTFKRDSDLIHWNNDPVRRITILKKYVIDGRDVNNFEVRQYTHQ
                     CSYQRHHTVYTIYLETNDNKIETKYNQGTQMSEDNIETIAQCITKFNGVYSIINRLLI
                     ELDNS"
     gene            4740..5012
                     /locus_tag="VD694_04260"
     CDS             4740..5012
                     /locus_tag="VD694_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HXW11952.1"
                     /translation="MQNQPIYLKAITLKDISDVDSIKDDAKKHMILIVRITPMAQKDI
                     ETLRKAIDDLYSFVKSVGGDIARLGEERVVITPPAVKIWKGVHELK"
     gene            complement(5026..5181)
                     /locus_tag="VD694_04265"
     CDS             complement(5026..5181)
                     /locus_tag="VD694_04265"
                     /inference="COORDINATES: protein motif:HMM:NF019159.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HXW11953.1"
                     /translation="MAYVNRLKPKLKKVITNHGEGKKCQNLSNSINRIFKIQSFHPLV
                     QESIKVL"
BASE COUNT         1711 a          933 c          889 g         1649 t
ORIGIN      
        1 tattaatgat atttgtgatc caatgtccag aaagaatcca tgatggttca ctttgttcat
       61 tattttgaat actcgatatt gcaccgaatg tcatatcttt gcgatccttc cccttgtagg
      121 gatatgattc accggaactt acagagtatg tggccaatgc tattacccct gttacgatca
      181 aaagtgccgt aaatagagat actgattttt gaaagaaact cttatttgac atatgcaata
      241 gataactgaa aaaatattaa aagctaccgg ccaaatctat ataatttcat atggtctagg
      301 cgaataatca ataatttgat aaggctattt acattaagtt tttccgccac gttacattca
      361 cactatctac tctccatgat tgattaacaa aagaatctaa aatatttata gaattttttg
      421 atttcaagta cgataatatt ccagtccacg caatttgggc tccattatct cctgcgaatg
      481 taactggaca tgaattgaat ttcactttat gtctttgaca tgccagattg agcatatgag
      541 acagttcctt gttcgcagat actcctccaa ccaataatag ttcttttttt tcagtggcag
      601 atagagctct ttcaactgct tctgttataa tagcaaatgc tgtttgctga atcgaataac
      661 atatgtcttc aactgcatat ttattagttg aaatcaatct cttggcagcg gataagatac
      721 cagagaaagt aacatcatta cctttaattg tgtacggtaa aacgacatag ttttttgaag
      781 atttatgggc caatctttct atctctgctc cacatggcga agctaatcct agatgtctac
      841 caaattggtc tagaagttgt cctaatgtaa tatctaatgt ttctccaatg acacgccagc
      901 tactattatt aaatactaat atcatagtat ggcctccaga caccaataag accaatgaat
      961 ccttactatt agtaagactc attccaagtt caatatggcc caatgcatga tttataggaa
     1021 tcaattttac atcataaaat gaagatattg aacgagcaat gactgcgcca atcctcaaac
     1081 aaggaccaag acctggacca gcagaatatg ctatgaggtt tagatctttg aaatcaacct
     1141 tagagattgc taatgatttt ttcaaaacat ctattgcaac tgatgcatga tgacgagctg
     1201 cctccctagg atggattcct gatccctcag gggccttgaa agtatcccta acatctgaaa
     1261 gaatattagg ataaaatttg gaatcagttt gctcaattac agaacatgca aaagtgtgag
     1321 cagtactctc tataccaaga cataacattc atatcacttc ctacttgttg ctgacacgat
     1381 cttgatcaca tcattatttt ttaatatatg atcagctccc aatctccttt tagttctaac
     1441 gtcaatcgca aaaaggaaac cttttcccaa ctcatcatgt acggcatggg ccaaatcttt
     1501 tgcagttgat tctttattta gtaaataggc ttcgggaaga atattgccct ttttatcaga
     1561 taactttgaa tcatcttcaa caggataaac tacgattttc tctaataaac taaaacaggc
     1621 aagatttatt atttcttgaa cgccagtgga gccatgtttc ttgatataat ttgaaacaat
     1681 ttcaagagct tgtttctgct tatcactcaa ttgagtattc tctttaattt cgaatgaact
     1741 atctcccgga agatagtgga tgaatccgtt ttttacagct tttcgtaata gcatctccaa
     1801 ttcggaagcg cagggtaaaa cattagtgta cttttctgtg agttttgcta gattaatttg
     1861 agatgtgggg atatctgcct tatttgctgc aattactact ggttttacat cttgccttat
     1921 attttgacaa aagtcaaata tttcctgttc tgtccaagat ttgaatttct tgttttggag
     1981 attcaatttg ttcacaactt tgtccaaagc tgcctcagtt ataccaagcc cagacaatct
     2041 ctttttcatt acttgtactg tgttttgtcc tgacgaatca ggttctttgg tattgtccat
     2101 atctcgctta ataattgaaa ccaaccacaa gtcaaattct tcttcaacaa atcgtaagtc
     2161 ttctattgga ttgccagttc ctggtgtcaa tggtctccct tcaaaatcgg tggaacccga
     2221 aatgtctatt acgtggataa gtgcgtctgc ttgtcttgcg tcatccaaga acttgtttcc
     2281 caggcctttt ccttcatgag caccaggaac cagaccagcg acatctatga tttgcacagg
     2341 aataaatctg attccgtcta tacaaattga atggaccgga ttatctttga ccccaaattc
     2401 tgtgcataca caatttactc ttacgtggca aactccaagg ttaggattca ccgttgtaaa
     2461 cggataattt gcaatattta caatattatc tgtagaggct gaaaaaaaag tagacttgcc
     2521 aacatttgcc ttaccaatta accctatgag cactcatatt gattattaag attcataaat
     2581 taatgttttg agatttggaa tcatcataaa cttgttcgtc taaacacaaa atttaatttg
     2641 tttcatgata ataaatctgt cattggccgg catttttgca attgctaatt gttccacaga
     2701 caaaggcgat ctaatgtcgt atttcattaa ttccttgcag atgctacaac ataggggaaa
     2761 agcgtattgg aaagtgatta ttgacaatat cgtctcaagc ggtgtcggcc cattccccgc
     2821 tgacggatcg attttaaaga tcgttgaaaa taatagtaac ctcgatttta aactaggatt
     2881 aggttattta tccaaaagaa cccctagatt caagagtatg aataaaatta gtgtagtcct
     2941 tgatggtttc tttgtagaca ttgaaaaatt gcatctacac ccactcgtag gtgatgcagc
     3001 aagtgcagat tcattattca agatttatac cattttcaaa aaactcctaa tagataaggg
     3061 aaatccagaa aaagcgtgcg aatttttgga cagacatttg aggggaaatc tcaccatgat
     3121 tagcaatgaa aagatatatg cttatagaga ctctaccggt ttcaaaccac tagtgagtgg
     3181 gaatgacagg aacaactcaa tttcaattat ggcttcggaa aactctctgc gtattccatt
     3241 tcctaatatg aattttcaag atgtaaaagc tggacaatta attaaaatgg atgctgaatc
     3301 cggtcaagaa aaattactat cacttcctgc tacaaggact atgatagatc catttgaatt
     3361 tattcgagag tctcatgtta ctgcaactat cgacggaaag gggatatatg aagttagaaa
     3421 aaaaataggg aaagtgcaag ctgaatttct ttcatcgcat actggcattg atattgaggc
     3481 agcctacgcg gaacctgatt atccaagacc tatgacgttg ggttttagtg cagaatatcg
     3541 acatcacatt ccaaaatttg atttgggtga ggccataatt aatgacaggt acgatgattc
     3601 tgatcgtatg atagactttt ccgaaaacat aagtaagaat aagatgataa cctctggaaa
     3661 atctttgaaa tacattctta gacataaaat taaccagaaa cacattggtc tgattcaagg
     3721 aacaattcaa actggaataa ctgccaaaga aaccatttat tatttgagaa aagcaggtgt
     3781 taaatcagtt tctgttgtcg taagctacgt tcctacagta gatggacgac aagttggact
     3841 atatactcac aatagagaat tgattgctca taaatatatt ggacaagtgc cctcgcttga
     3901 ggaactaaac accaaaatat ccagagaatt aggtgctgat aaagtattct ataattctcc
     3961 ttctattctt tctaagggta tcgggatttc agaatataat ttatggtttc ccgaatgggt
     4021 acgattccta gagtatgaaa agtaatgata aaagaatgat aagaaatgac attcaaacgt
     4081 gattcagatc taattcattg gaacaatgat ccagtaagga ggattacaat attgaaaaaa
     4141 tatgtaatcg acgggaggga tgtgaacaac tttgaggtaa gacaatacac ccaccaatgt
     4201 tcctatcaaa gacatcatac agtttatact atttatctcg aaactaatga taacaagatt
     4261 gagacaaagt acaaccaagg aactcaaatg agtgaggata atattgaaac catagctcaa
     4321 tgcatcacaa aattcaacgg ggtttattca ataattaacc gattgctcat agaacttgat
     4381 aactcttaac agacaataac aggcaataat ttgcaataat taatctcact gcctgaccgt
     4441 cattttctca cctagaaatg aaatactcaa tggaaatgaa tcaatagagc tcatcgtaaa
     4501 attattattt tatacaaacc agatttgttg aaaatagaat tatttttatt attttcaaaa
     4561 ataatgaaat atttaatatt caatcataga aaaattaatg gttaaatgca tatttttgaa
     4621 ataaagtata tgctcatttt gacgtttaat gacacaaatt gagctaacgg gtaaaaaata
     4681 tttgaccaga ataactattt gactttttac gtctcaagct aataagagga tgtgctactt
     4741 tgcaaaatca acctatatac cttaaggcca ttaccctaaa ggacattagc gatgttgatt
     4801 ccatcaagga cgatgctaaa aagcacatga tattaatcgt tcgaataaca cctatggctc
     4861 agaaggacat tgaaacttta cgaaaggcaa tagacgattt gtatagtttt gttaaatcgg
     4921 ttggggggga tattgcaaga ttgggtgaag aacgagttgt gattactcca cctgcagtga
     4981 agatatggaa aggagtacac gaactaaagt aagctttcca atagttcaca ataccttgat
     5041 cgattcttga accagtgggt gaaaactttg aatcttaaaa atcctgttta tcgaattaga
     5101 caagttttga catttctttc cttctccatg attagttata acttttttaa gctttggttt
     5161 cagtcggttt acataagcca at
//
LOCUS       DASPFX010000200         5699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_598461, whole genome shotgun sequence.
ACCESSION   DASPFX010000200 DASPFX010000000
VERSION     DASPFX010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5699
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598461"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            241..1470
                     /locus_tag="VD694_04270"
     CDS             241..1470
                     /locus_tag="VD694_04270"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW11954.1"
                     /translation="MDETHGQTKLKERYLNKGTDHPQVVDSNLKVEEVTEGLRVPTTM
                     AFLGPDDFLILEKDTGTVMRVNGGILTDMPLLDVDVANSIERGMCGIAVSKNGPNTIV
                     YLYYTEINGNDGSDRTGKAPIGNRLYKYDLVDNRLVNPVLLLDLPADPGPRHNGGAIQ
                     IGPDNNIYVPVGDIDGSFKPDFEATQTQNFEDGIVADGRSGILRLTQDGKPVGEGILG
                     DSMPLRLYYSYGIRNSFGLDFDPVTGFLWDTENGPADGDEINLVNPGFNSGWNQMYGF
                     SASQKKFNIDDLITFDGNGKYDDPKLVWTKSAGLTSIVFLDSDKLGPQYENDMFVGDV
                     HNGRIYHFELNEARNDLVLPPALADRYVRYPITVGAEEIIFGTGFGGITDLTVGPDGY
                     LYVVSIGQGKVFRILPE"
     gene            complement(1508..3667)
                     /locus_tag="VD694_04275"
     CDS             complement(1508..3667)
                     /locus_tag="VD694_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HXW11955.1"
                     /translation="MAKDPICGMFVEEKLDSIRYTMKGKEYLFCSTQCLHEFTEPEKE
                     FKKLKIHVAISIGLTIPILFLSLPHMLPTQFSQFFPMDLMHNSSYVMFVLATPLQFWV
                     GWRFYKGFWDGVRAKASNMDTLIAIGTSAAYLYSAAVTIAPNLFPFKAVYFETAAVII
                     TLILIGRLLETRTKEKTSFAIRKLFDLQPRMANVLRPTTSPSGQILKAETEIPIEEIE
                     VGDILIVRPGESIPTDGVIIEGISSLDESPITGESVPVDKSSGDDVIGATMNKTGLLK
                     IKAAKVGQDTVLSQIINLVEEARTGKAQMQRIVDQVAKYFVPAIVITAVGVGLGWYFV
                     GNIGFTYSLLAFVSVIIIACPCALGIATPAALMMGSGKAAEHGILFKGGEYLEIASKV
                     QTIVFDKTGTLTEGKPSVTDIYDVSEPKIGEKELLRLAAIAESGSEHPLGQAIVKKAK
                     ENNVVPNPELSESIAGHGIIARYQDHVLLVGTRKLLSDNDISIPESVESKLSKLENMG
                     KTAVLISIDSKLSGIIALADTLKNSAKDAVRALKSNGNEIIMLTGDNERTANYIASEL
                     GIKKVISQVLPHQKEKAISKLMTDKKIVAMVGDGINDAPALARADLGIAIGSGTDVAK
                     ETGGIILIKGDVRDVGIALELGRKTVSKIKQNLFWAFAYNTGLIPIAGGVLVPFLGVG
                     IFGWLPMLAALAMAMSSVTVVGNSILLGRYKSKLVNT"
     gene            3729..4031
                     /locus_tag="VD694_04280"
     CDS             3729..4031
                     /locus_tag="VD694_04280"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HXW11956.1"
                     /translation="MTYNVQSSLPIEHDEYDMSILKSLFEDGRKSFRQISRETGITTP
                     TVKARFENLVNVGFIRRVVPVIDFEKVARINPNLEKQADNYYNHNSIQQFKKIKKG"
     gene            4346..4990
                     /locus_tag="VD694_04285"
     CDS             4346..4990
                     /locus_tag="VD694_04285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11957.1"
                     /translation="MNCFDYGRITANVIVLPKITAAMERPTFPNTFNPNNANCLLSKR
                     LIDSFPFDQKNNIVTVGSRDEYFACAYDIDPVTNVMISYSCVEGNIKNSDGKNTINLG
                     SGSENTLSTGSFKPVKGSDIDKPTIRVVIPLSDRKDVKEIKVVTMIKGEFESRTIDAH
                     KLLKQSNHNTIIVPLNYDKSPEIGPIQEGDLFFACVSADELNPPEGTECEHRHT"
     gene            5258..5623
                     /locus_tag="VD694_04290"
     CDS             5258..5623
                     /locus_tag="VD694_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11958.1"
                     /translation="MSDQVNGVREVVKEFTEADNAIKKVFSKVDPILVVRLIFDEKAN
                     KENIYTLEIILKPDQDTDQIRERVISVTGMAPGFYLKGTKMVVSHGLDLNLLKLINDL
                     DFVISIKGSPYSAGGSSDF"
BASE COUNT         1829 a         1041 c         1037 g         1792 t
ORIGIN      
        1 aaaatgtaat tatgaagact aatagtgatt tcaactaacg agaattacta gtcttaatta
       61 ataatcgtta tgagaattaa atgctaacgg cagaattgta tgatagaact gagaaggtaa
      121 attaatattt gtcgttactt gttgtgaaac gcgaatctaa tcttgctttt tcggcctagg
      181 gtgaatagct atcttattct tctgtttctc attattctta tcttcaatct taacttttac
      241 ttggatgaga cccacggtca aaccaagtta aaagaaaggt atcttaacaa agggacggac
      301 catccacaag tcgtagattc caacctcaaa gttgaggagg taactgaggg cttgcgtgtg
      361 cctacaacca tggcttttct aggtcctgat gactttctta ttcttgaaaa agatacagga
      421 accgtaatga gagttaatgg aggaatactt acagacatgc cacttcttga tgtcgatgta
      481 gcaaattcta ttgaaagggg aatgtgtgga attgcagttt ccaaaaatgg accaaacaca
      541 attgtttatc tctactatac tgagataaat ggtaatgatg gaagtgatag gacaggtaaa
      601 gcaccgatag gaaaccgact ttacaaatat gatttagttg acaatagact tgtaaatccc
      661 gtacttcttt tggatttgcc agcagaccct ggaccaagac ataatggagg agccatacaa
      721 ataggtccag ataacaacat atatgttcca gtaggagaca ttgacggttc atttaaaccc
      781 gattttgagg ctacacaaac tcagaacttt gaagatggaa tagttgctga tggacgcagt
      841 ggtattttaa gactaacaca agatggtaaa cctgtaggag aaggaatact aggggattcc
      901 atgcctttgc gattgtatta ttcttatggt attagaaaca gttttggact ggactttgat
      961 cccgtaaccg gttttttatg ggacacagag aacggaccag cagatgggga tgaaataaac
     1021 ctagtaaatc cgggattcaa tagtggttgg aatcaaatgt acggtttttc agcctcacag
     1081 aaaaaattta atattgatga tttgattaca tttgatggta acggaaagta tgatgacccg
     1141 aaattagttt ggacaaaaag tgcagggtta acgtcaatag tatttttgga ttctgacaaa
     1201 ttaggacctc aatatgaaaa cgacatgttt gttggagatg ttcataatgg tcgtatttat
     1261 cactttgaat taaacgaggc aagaaatgat ctcgtacttc ccccagctct tgcagatagg
     1321 tatgttcggt atccgattac cgttggagca gaagagatta ttttcggaac cggatttggc
     1381 ggaataactg acctcacagt tggcccagat ggttacctat atgtagtatc tattggacaa
     1441 ggtaaggtat tcagaatact gcccgaataa ttttgcgtat tgtttattcg tgttagagaa
     1501 atcgatatta cgtattaacc aactttgact tgtatctccc aagcaaaata gagttaccaa
     1561 ctacagttac agaactcatg gccattgcaa gtgctgccaa cattggtaac caaccaaata
     1621 ttccgactcc gagaaaaggt actaatacac caccagcaat tggtatcaaa cccgtgttat
     1681 atgcaaaagc ccagaaaaga ttctgtttaa ttttggaaac tgttttcctt cctagctcga
     1741 gtgctatacc tacatctcta acgtcacctt ttattagtat aataccgcct gtttcttttg
     1801 cgacatctgt tcctgatcca atagctattc ccaagtctgc tctagctagc gctggtgcat
     1861 cattaattcc atctcctacc atggctacaa ttttcttatc agtcatgagt tttgaaattg
     1921 ctttttcctt ctgatgtggt agaacttggg aaataacctt tttaattcct aattcactgg
     1981 cgatataatt tgctgttctc tcattgtcac ctgtaagcat tatgatttca ttcccgttag
     2041 attttagagc ccttacagca tcctttgcac tattttttag tgtgtcagca agagctataa
     2101 ttccagaaag tttagaatct attgatatca agacagcagt cttacccata ttttcaagtt
     2161 tgcttaactt tgactcaaca ctttcaggaa ttgaaatatc attatcagac agcagttttc
     2221 ttgttcccac aagaagtaca tggtcttgat accttgcgat tattccatgt cctgcaattg
     2281 actcggataa ttctggattt ggaaccacat tattttcttt agctttctta acaattgcct
     2341 gtcctaatgg atgctcagag cccgattctg caatagccgc caatcttaat aattcctttt
     2401 ctccaatttt gggttcagat acatcataaa tatcagtaac agatggtttt ccttctgtta
     2461 atgttccagt cttgtcaaac actattgttt gtactttact tgcaatctcg aggtattctc
     2521 cacccttgaa taatatgcca tgttcagctg cttttccgga acccatcatc aatgcagcag
     2581 gcgtcgcaat tcccaaggca caaggacagg caataatgat tactgaaacg aaagctaaaa
     2641 ggctatatgt gaatcctatg tttcctacaa aataccaacc taaaccaacg ccaaccgcag
     2701 tgataactat tgcaggaaca aaatattttg ctacctgatc tactattctt tgcatttggg
     2761 ctttgccagt ccgcgcttct tcaacaagat ttattatctg ggacagtacg gtatcctgtc
     2821 cgactttcgc agccttaatc tttagtaatc ctgtcttgtt catagttgct ccaataacat
     2881 catcaccgct cgatttgtca actggaacac tctccccggt aattggcgat tcgtccaatg
     2941 aggatatacc ctctattatt actccgtcgg tgggaatact ctcaccaggc cttactatca
     3001 atatatcccc tacctctatt tcctcaatag gaatttcagt ttccgctttg aggatttgtc
     3061 cagaaggact agttgttggt cgcaacacgt tagccatgcg tggctgcaaa tcaaataatt
     3121 ttcttatcgc aaaagaagtt ttttcttttg ttcttgtttc tagtaatctc cctattagta
     3181 tcaaagtaat aattacggca gcagtttcaa agtaaactgc tttaaatgga aagagatttg
     3241 gagcgattgt tactgcagcg ctatatagat atgctgccga agttcctatt gcaataagtg
     3301 tatccatgtt tgaagctttt gctctaacgc catcccaaaa acccttatag aatctccacc
     3361 caacccaaaa ttgtaaagga gtagctaata caaacatgac ataactggag ttatgcatca
     3421 aatccatagg aaaaaattgg ctgaattgtg ttggaagcat gtgaggtaga cttaagaata
     3481 atatgggtat agtcagtcca atacttattg ccacgtggat ttttaatttc ttgaactctt
     3541 tttctggttc tgtgaattca tgtagacatt gagtactgca aaacaaatac tctttacctt
     3601 tcatcgtgta tctgatagaa tcaagctttt cctcaacaaa cataccacat attggatctt
     3661 ttgccaatac cttatagtaa actagaccaa atataacata agaacttttc aaatgtaaaa
     3721 tgtaaaattt gacctacaat gttcaatctt cattgccgat tgaacatgat gaatatgaca
     3781 tgtcaatact aaagtcgcta tttgaagatg gtcgtaagtc ttttcgccag atttcacgcg
     3841 aaactggtat tacaactcct actgtcaaag caagatttga aaatctggta aatgtaggct
     3901 ttatccgacg agtcgtacca gtaattgact ttgaaaaagt tgctagaatc aaccctaatc
     3961 ttgaaaaaca agctgacaat tattacaatc ataatagtat tcaacaattc aagaaaataa
     4021 aaaagggttg aagatagttt tggattgtga tttatgtcat ggagttattg ccggagttcc
     4081 acaagttttg aaatttgcaa attatgaaac gattcttttg ctgcaattca tgtaaatctg
     4141 agtataaaag aaaatatggt ggaagaatac agtcaatcat agaaaagcat gtagagtaga
     4201 atatacatta tgatttatgg gaaataatat cttccatccc gatacgagta catttatttg
     4261 ttgaccgtga ttaattcctt attgacttgc aatacatcgg atcttatagt aacgaagaat
     4321 tttactttta gtttggaaca cccatttgaa ttgcttcgat tatggtcgta ttactgctaa
     4381 tgtaatcgtt cttcctaaaa taacagcagc tatggaaaga cccacatttc caaacacatt
     4441 caatccaaat aatgcaaatt gtttattatc caaaagatta attgattcat ttccatttga
     4501 tcaaaagaac aatattgtta ctgttgggag tcgcgatgaa tattttgcat gtgcctatga
     4561 tatcgatccg gtaacaaacg taatgatatc ttattcttgt gttgaaggta atattaaaaa
     4621 ttcagatggc aaaaacacaa taaatctagg ttcaggaagt gaaaatacat tgtctactgg
     4681 atcattcaaa cctgtgaaag gcagtgacat tgataaacca actattaggg tagtaatacc
     4741 gctttctgac agaaaagatg ttaaagagat caaagttgta acaatgatca aaggagaatt
     4801 tgaatcccgg acaattgatg ctcacaaatt gctcaaacaa tcaaatcata atacaataat
     4861 agtacccctt aattatgaca agagtcccga aattggtccc attcaggaag gagatttgtt
     4921 ttttgcttgt gtttccgcag atgagttaaa tccacctgaa ggaacagaat gcgagcatag
     4981 acatacataa cacacaggac acatacataa tctggtggca agatgattca cttgatattg
     5041 taccagtgta tttaatgaga acaaattctc cagcaagtat aacttgaata gagttggatc
     5101 ttaatttgaa ttttttatca atcttgtaat aattcttaca attcgattga tttattttcg
     5161 atcccacaca aaaaaggttt acaaatttca gtcttaaacg gagtcaaaat agattgtaaa
     5221 aagtttttaa gccaatattt caagctatta agagtaaatg agtgatcaag taaacggagt
     5281 cagggaagtt gtaaaagaat ttacagaagc tgataatgct atcaaaaaag tattttcaaa
     5341 agtagatcca atattagttg tccgattaat ttttgatgaa aaggcaaata aggagaatat
     5401 ctatacctta gaaatcatac tcaaacccga tcaagatact gatcaaataa gagaaagagt
     5461 aattagcgta acgggtatgg caccaggttt ttatctaaag ggaacgaaaa tggtagtcag
     5521 tcatggcctt gatcttaatt tattgaagct tataaatgac ttggactttg taataagcat
     5581 caagggaagt ccatacagcg ctggtggttc ttcggacttt tagctgcata gttactttga
     5641 cttaatcaag tgaacaatta actagtaatc gtcaccgaac cacgcgccca tgtgccaat
//
LOCUS       DASPFX010000201        17405 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_151496, whole genome shotgun sequence.
ACCESSION   DASPFX010000201 DASPFX010000000
VERSION     DASPFX010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 17405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17405
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151496"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..837)
                     /locus_tag="VD694_04295"
     CDS             complement(4..837)
                     /locus_tag="VD694_04295"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HXW11959.1"
                     /translation="MVIIILNNDDLPPSLFAQSQVPLNQTHDFFIAKWDSRGNGSGQF
                     SMPHSIDIDLAGNVYVADSGNSRIQKFTSDGQFVTKWGTEGTDDGQFKILHDVAVSPS
                     GEFVYTIELGNQHRIQKFTSDGKFITKWTYENSGGPESYSDPHQIAIDSLGNVYLPDA
                     AGNKVIEFDGNGKFIKNWGVKGTAEGQFHKPHGVAIDSKDNIYITDMRNSRIQKFDSN
                     GNFITTWGTEGTNQGQFTEVMPGIDTDYSNNNVYVIDKEGANVQKFSNNGKFIAKWGI
                     K"
     gene            complement(1102..2169)
                     /locus_tag="VD694_04300"
     CDS             complement(1102..2169)
                     /locus_tag="VD694_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HXW11960.1"
                     /translation="MSHLDLAEDRHEKWIDKNVLVTGGTSFIGSHLTEKLVSLGANVS
                     VVDDLSSGNLENLSAIKSKIKFIKKDLEYIEKDEIREIFRDQNIVFHLAAVHGGRGYI
                     QTHPADVCSNLSIDHHVFEAVVGSSNSMENLVFASTACVYPTDMQNKGSNYQLKENDS
                     DPKLLGGYMSADIEYGWGKLMSEMQLNAFINQYGIKGCPVRFVTAYGPRENESHAIIA
                     LIYKALQKMDPFSIWGNGQQERDFTYVDDIVDGTILASERVFNGIPINLGTGQKHKLI
                     DVAQMIFNLVNWKPTKINFETSMPVGPWSRALDNKRARELLGWRPRFSLEQGLKKTIE
                     WYKQSSKYRNRVAKELLLERV"
     gene            2745..3764
                     /locus_tag="VD694_04305"
     CDS             2745..3764
                     /locus_tag="VD694_04305"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HXW11961.1"
                     /translation="MNRVIITGGNGFIGKHLVKKILSCNLNSLTLISNSANFGDKYFS
                     NRKFSKNTPLRSYTADIRDRKAISEILLRESADTCIHLAAKTSVPDSIKNPDETMEIN
                     ANGTLNVLDACHRSKVNNFVFASSAAVYGDAKELPISENCFLRPLSPYGKSKMLAEQH
                     VFRYRKLKKIQNTIVLRIFNVYGDGQVSESDVVTKFARRLSKGLPPVIYGDGKHTRDF
                     ISVDDVAEAIILSVGAMEDGSNKNYKSSLNPVFNIGTGTSTSIKELAQKMISISGLKL
                     DPIYEEENQESRIILHSCANITNAKKALHFVPKKDFDTGLREVIEPLHLSKRVSHDGS
                     NTLKT"
     gene            complement(4050..4514)
                     /locus_tag="VD694_04310"
     CDS             complement(4050..4514)
                     /locus_tag="VD694_04310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11962.1"
                     /translation="MDQQLITIPFAYSSSNPPEPLKLDGPVSSIQFSSDGDPLWVVSG
                     RWRMELDIDNTGNVPTEIKNFTTDLVVVPADGSVTERYELLDFKQDGISYDNNTKTSS
                     TKGKLTMTVKDQRVENIETELKLINKNILTITLDPTKTRDQLGETPIYGIER"
     gene            4758..6641
                     /locus_tag="VD694_04315"
     CDS             4758..6641
                     /locus_tag="VD694_04315"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW11963.1"
                     /translation="MVTPAMLLIIGVVLATFYHEYDTTRTIFPSFNLTVHDLENIGGN
                     IISVQKDPTGNAVSLVSGKWQFNKSAASTGEIDNASIKFESDLKTYNLDGISTEEISL
                     SNFTLSKFNSTGNDAVLDGSVKLNSKDKDADGIANATEIPLRIVVSNKLIFNISSPSD
                     LFQKHFQESPIYGKVTYSVRADGDDNKSSSSRRSPAISTQLTGGPVVVDPNLRVELVT
                     DQISFPSKMAIIGDNDILILEKNEGLVKRVLNGIVQNDSLLDVAVANGVERGLLGIAV
                     KKTNTSITHVFLYFTESVKDGDDVSEKKTPIGNRLYRYDLVNDKLVNPKLILDLPSTP
                     GSAHNGGEILLDGKGNIYLTIGDLNRSNAKRSNSTITTVQNNHDGLYPDGRAGILRIT
                     EDGKAVGSGIIGNDHPLDKYFAYGVRNSFGMAFDPLTGKLWNTENGPEFGDEINLVEP
                     GFNSGWNKVQGIWIPDENSPGNIASNFSGLVSFNGTGKYSEPELSWYQPSPGLTSLIF
                     LNSTKLGSKYANEMLVSDFHNGNIYNFKLNNNRTSFILPPPIADKVVNTKNETQSSIF
                     ANGFGAIMDMEIGPDGYLYVLSLYQGGPDCDPIRHPNQPCVAYDKSIGGSLFKILPKS
                     VVN"
     gene            7175..8800
                     /locus_tag="VD694_04320"
     CDS             7175..8800
                     /locus_tag="VD694_04320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11964.1"
                     /translation="MSPRHERVRNIVILLLPLILSAYTHLWNPLGFPSIHIDEAHYMR
                     RAMLVIEGMGPQESASSGYPRTYDHPYFGQLFLGGILSLIGYPDILNPSSDLQSIESL
                     HLVPRLLIGLLAIVDTLLVFKISERRYGMTVAFIASVLFAVMPMTWVLRRIYLDTILM
                     PLMLSSILFAVYLRRNDNFVKTDGTTKGEKCKIGQGTLILLSGIFLGLAIYTKAPAFT
                     MMPLVASLVFFNSKKRFKSLGIWLIPVILIPLLWPLYSVVIGQTDLWLEWVLWQTDRN
                     RPLSLSLTDFFLIDPLITIIGIAGFIWTGLKKDFFPLMWVVPFLIFSYFIGWVQYFHL
                     IVIFPAFCIASAVLIDRLQKFLVQRFKKSKRVKPLSHVTFLMIVIFGLIISSILINSD
                     VNNSYYEIHAAISANIQKISTFSGEQSGNLTVIGSHWWVWASYWITQYVLNNDYKLID
                     PHFDPRFKLPVTTDNVVFIDDEKFIDSISRNVESDNLLDIKQLHDESSIITTFFDNVT
                     SNDNGVYPNNIFSIMINNENHPTGEVVIRRNFQ"
     gene            9559..14058
                     /locus_tag="VD694_04325"
     CDS             9559..14058
                     /locus_tag="VD694_04325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11965.1"
                     /translation="MGLIRYYSKSSIDTDYIQDRDSTQVGNQHNDIQTRVEGQKNRSQ
                     SIIFFVTIFIVFLVISAFTYNENLQIFTSWDNIEPIELGQLFSGVMLCFFMPGYAVVL
                     IITKNHKLNPVLSVLLACLCSMLITGAISYISALYFDIPISENKTLFIAIYIIILVSL
                     CVYYRTSRIWLPVNQQIDYYSCYHFLLPLGIRLKKFLKTNASELLVFVSLLTLIIGAT
                     YYLYGGITIGDQWFHQGRALLFMEGSIKEATLSNAEISYPPFQSALLAALTTLSGIPL
                     VNAYASIAFLNMTPLFAFYYFFTTWVSPAMRRSGLLACSLFTVSSGFGWIYLLSTLGT
                     EPIISEQSSLNILGNMRSLDIIGTSNFVIPTAPDFSTGLIYIALPAGFLLLGIVRARI
                     NMTFTNLLLVAIVSVLGIISHDEFYIFVIISAIVPILFNLPGRNYQYLGLLVSFSIVY
                     LMDILAPAKFFTSNTIMEIPLFYLILFFVVISWTVYTFRIRLLSFSKAISNSFKLRSF
                     LGNDLRIHFIIGMFITFMVVYIYLLSFIVIGHLSLADIKDQTFDSNLPWYLYPMRMGI
                     VGLFGVAFVLYAFFRKSEKYAYVFGILVVVAFFTGPYYDEHRFSKYVMVGMIGLATIA
                     IFKILNQKHGPSNRNSIIIGSVIVIACLSNLLFIGYGSLILQTNNYYETLPRRNFPSV
                     SELNLFNFFESNSDVDSKKYNVVSFPDEYNRWQDGLISKIQAFSGLPYNKIHQMPLVL
                     NASTIDEFYRLLDATDSRYIVLSKDNISTRDILPEPVSFALQYFEHVYEDQNYVVLDI
                     PDIKGPSSSSAEVALLYDREDHRMSPSMPVTKELKYDKSAFSVNNGSGNASTNTHYKT
                     TILKGSNLDKGVSLWSKKIQSENPVNYIEAKFRIISENKDRNNDVKLKWSQGDTEYYV
                     SLSKAGIELYRQSENQSDKTSLFKNMEIEKKDHFWYTIRIENLPNTINIYVNSLPKIH
                     VSGDIIGNNTESISKVGFTSYFNDIEIAPINIGSITENVQKNDNQIKYYNFDFPISLF
                     ALSEIGYDTFSKNDLSALSKNIVVTSDTEFDEFIFDKYLSYIRTGGKVLVINPHDNYN
                     GTFSKLFSIQSNGSILEKFTNIAYNRNKSIFLDVQGLVNSSQAVLSPDINIIASYKNS
                     KNQTIAPFAIEKNFPNGGKIILINAKPYFNSISEYPKRYYLTLSNISKLLNLELDKIE
                     RQQDLSGYPNSFVGRMNLSGSVILNSSSLSLLSSNELKNHPVINTSRITLYDYEIGSN
                     TTLKDARIKDLKLGGNYSASIQANGSIELPGSESNYGYLNFLTQNKDSVNMRVHLPSN
                     RFSFMEISFQNGTLSDTIRISNGSVVDLYEVESASPLEPISILLKNPKIMVKGNTSIE
                     NSNFDGYLNVRGKLNADNPFNMEGQLKAKFDFIDHYHLPDSNNTRINYISYLQDIVTD
                     GKIDKYQTLVKLPGDIPYKGDEIPWKNIFTSASNVILLMLLTAVSVIISWRFWPKIKY
                     DGNKV"
     gene            complement(14239..14388)
                     /locus_tag="VD694_04330"
     CDS             complement(14239..14388)
                     /locus_tag="VD694_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11966.1"
                     /translation="MKNQRRMGELITICGGIGLAIVGFFVNVPPVAYGGLCIMGLGVI
                     SVFWR"
     gene            14551..14805
                     /locus_tag="VD694_04335"
     CDS             14551..14805
                     /locus_tag="VD694_04335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11967.1"
                     /translation="MVKILYQNPHANEDSDNFYISIPKDWSGGADDEVTVIVDDVCVV
                     VPQTIAGATGELIVLRLLEAMIEGDVIDAGDVQKAIEHIL"
     gene            complement(14880..15434)
                     /locus_tag="VD694_04340"
     CDS             complement(14880..15434)
                     /locus_tag="VD694_04340"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HXW11968.1"
                     /translation="MIQTSRLSYSKNLYAGHKDKVAKSFAISLPVFAVSLISVLGYPA
                     HAFGSEFELSNWYDKALSINQNNVPALVQKGTELVNQGDGRQAVTWLDKALSIDPTNL
                     MALVSKGAALRDMGKYQEAIVTYDKVLTIDPNDVYAMGGKAGSLYGSGQYGQAIILID
                     RALELNPSDGNILQVKETLTQATN"
     gene            complement(15918..16901)
                     /locus_tag="VD694_04345"
     CDS             complement(15918..16901)
                     /locus_tag="VD694_04345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11969.1"
                     /translation="MASKLCLLLVSIFVIPLVQHTVSAQTIADPLLKEFSVPAGSHPH
                     DVAPAKNGSVWYTAQRSGELGLLDPVSGSTHHIELGQGSAPHGVIVGPDEAPWITDGG
                     LNAIVRVDPDTQNVTLFPLPENIGYANLNTATFDHKGILWFTGQSGIYGRLDPSTGDM
                     EVFDAPRGQGPYGISTTPEGQVYFVSLAGSYIAQIDLETGNATVLDPPTSDQGARRVW
                     SDSAGRLWLTEWNAGNLGMYDPVTNIWKEWKLPGQNPQPYAVFVDDKDIVWISDFGSN
                     AMIRFDPSSEKFQSFPLPTADAKVRQLLGRPGEVLGAESGTDKIVIIRTGT"
     gene            complement(17047..>17405)
                     /locus_tag="VD694_04350"
     CDS             complement(17047..>17405)
                     /locus_tag="VD694_04350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11970.1"
                     /translation="GADFDFFRIGPDGLQVGTEEFKIPPKEVLVVTDVDWLISGGPPG
                     EFHTLELFIKNIAGGGRSGVFHSCITLNDSGQGGINEEMISGFVVSSEGKIEVQMDAH
                     AGIQDRVILRGYLHKE"
BASE COUNT         5514 a         3210 c         3077 g         5604 t
ORIGIN      
        1 gcctcattta ataccccatt ttgctataaa cttcccatta ttagaaaatt tttggacatt
       61 ggcaccttcc ttatcaatga catatacatt attgttggag taatcagtat caataccagg
      121 catgacctct gtaaattggc cttgatttgt cccctccgtt ccccacgttg ttatgaagtt
      181 gccattgctg tcgaattttt gaatacgtga attacgcata tcagttatgt agatattatc
      241 tttagaatca atggctactc catgaggttt atggaattgc ccctctgcgg tacctttaac
      301 cccccaattt ttgatgaatt tgccgttacc atcaaattcg atcactttat tgccagctgc
      361 atcgggtaaa tagacatttc cgagtgaatc aatagcaatt tgatgtggat cagagtaaga
      421 ttcaggtcct ccactatttt cgtatgtcca ttttgtaata aatttaccat ctgatgtaaa
      481 tttctgtatt ctatgttgat tgcccaattc aatcgtatag acgaattctc ctgaaggcga
      541 aactgcaacg tcgtgtaaga ttttgaactg tccatcatca gtaccttcgg tcccccattt
      601 ggtaacaaat tgaccatctg atgtaaattt ctggatacga ctatttcccg aatcagccac
      661 atacacattg cctgccaaat caatatcgat actatgtggc atactaaact gtccagaacc
      721 atttccccga gagtcccatt tggcaataaa aaagtcgtgg gtttgattaa gtggaacctg
      781 actctgcgca aaaagacttg gaggtaagtc gtcattgttt aaaataatga taaccattaa
      841 gaataagaat ggtagaaata ggatcaagac aaagtaggac aaaatgctaa agttaatttc
      901 tggtattttg tattttaagt ttcactgtcg cccagttcac atttctaaaa caacatggaa
      961 tagttttcaa gcatagcaaa aactgctctg acaagtgcaa atcaaaattg cgaactaata
     1021 tctcttctcg atctttggcg tgctaccata gtgaaatatt atatcaaaat caaaatcaaa
     1081 atcaaaattt taaattcatt ctcaaactct ctcaagtaac agctctttag ctactctgtt
     1141 tctatatttt gacgattgtt tataccattc tattgttttt ttgagacctt gctctagtga
     1201 gaaccttggc ctccatccca gcagttctct tgctctctta ttgtccagtg ctctgctcca
     1261 aggtcctacg ggcatggatg tttcaaaatt aatcttggtt ggtttccagt tgactaaatt
     1321 aaatatcatt tgtgcaacgt ctattaattt atgcttttga cctgtaccta gatttatggg
     1381 aattccgtta aacactcgtt cagaagccag tatcgttcca tccacaatat catccacata
     1441 tgtaaaatct cgttcctgct ggccattgcc ccagattgaa aaaggatcca tcttttgcaa
     1501 agctttgtat attaatgcga taatagcgtg agattcgttt tctcttggac cgtaagctgt
     1561 gacaaacctg accgggcatc ctttaatccc atattgatta ataaaggcat ttagttgcat
     1621 ttcactcatt aattttcccc acccatactc tatgtccgca ctcatatacc cacctaatag
     1681 ttttgggtcc gaatcgtttt cttttagctg gtagtttgat cccttgtttt gcatgtccgt
     1741 tggatataca catgcggtgc tggcaaagac tagattttcc atactattgc tgctacctac
     1801 gacagcctca aacacatggt ggtctataga aaggttacta cagacgtcgg ccggatgagt
     1861 ctgaatgtat ccacggccgc cgtgtactgc agctagatga aatacgatgt tttgatctcg
     1921 gaaaatttct cttatctcat ctttttctat atattctaga tcttttttga taaacttgat
     1981 tttactcttt atggccgata aattttctag atttccactg cttagatcat ccacaaccga
     2041 tacattggct cccaacgaaa ccagtttttc agtaaggtgg ctaccaataa agctcgtccc
     2101 accagtgaca aggacgtttt tgtcaatcca cttttcgtgg cgatcttcag cgagatccag
     2161 atgagacata gtcgatagaa taaaagtaaa aacatttaag gttaacttta cctttttaac
     2221 aaaatggaaa actgatacag atggatggag atgggaacca aagcagaatt tctaatgcct
     2281 tttgaaattt aaagaaggtg aaattatatg gtctaaggga gagtttaatt caagaatgac
     2341 aagcgatctg aatttaatta aataaccatg acaattatta acctgaagag aataaaaatc
     2401 aacggtgtta ttaatatctt ggggagacca tcgaacggct tgtctatact acataccaat
     2461 gagcatagtg caagcaagag taaacaatta ctttaagcct gagtttacta attgggttgc
     2521 cctgctatga tgttatgttc tttaaatgga attaactagg atattgatgg atatgttagt
     2581 taaattatac caatccattc atactttatt tagagttttt attctgtaca tgtttcacaa
     2641 aagatagtac gatatagata atattgaaat gaaaaaaata tcccacaatc aatgcaaggt
     2701 atatagatta tatacgaaca cttgtgtgtt aatttagaaa tattgtgaat cgtgttataa
     2761 tcactggcgg taatggattt atcggtaaac atctagtaaa aaaaattttg tcctgtaatc
     2821 tgaattcctt gactcttata tccaattcag ctaattttgg tgataaatat ttttcaaata
     2881 ggaaattcag taagaataca cctttacgat cttatactgc cgatataaga gatagaaaag
     2941 cgatctcaga aatactccta cgcgaaagtg ccgatacttg tattcatctt gcagcaaaga
     3001 caagtgttcc cgattcaatc aaaaatccag atgaaaccat ggaaataaat gcaaatggca
     3061 cactcaatgt cttagacgcc tgccacagga gtaaagtcaa caatttcgtt tttgcttctt
     3121 ccgctgcagt ttacggagat gctaaagaat taccgatctc agaaaattgt ttcctgagac
     3181 cattatcacc ctacggtaaa agcaagatgc tggcagaaca gcatgtattt agataccgca
     3241 aattaaagaa gattcaaaat actattgtac ttagaatttt caatgtttat ggcgatggac
     3301 aggtcagcga aagcgatgtt gtaactaaat ttgctaggag actttcaaaa ggattgccac
     3361 ctgtaattta tggggatggc aaacatacaa gagatttcat ctctgtagat gatgttgccg
     3421 aggcaataat attatctgtc ggggcaatgg aagatggtag taacaaaaat tataaatcaa
     3481 gtttgaatcc cgtcttcaat ataggaactg gtacttctac aagtatcaaa gaacttgcac
     3541 aaaaaatgat ctcaatatct ggccttaaac tagatccaat ttatgaagaa gaaaaccaag
     3601 agagcaggat tatcttacac agttgtgcaa atatcactaa tgctaaaaaa gccttacatt
     3661 ttgttccgaa aaaggacttt gacactggac tgcgagaggt aatcgagccg ttgcatttgt
     3721 caaaaagagt ttctcatgat ggttcaaata ccctgaaaac gtaaatgacc aaatctacta
     3781 aaattttagt taaaataact tagtttgagt atcattgtag tataatacat tcattgggaa
     3841 catttaggag agttgataat ttccacaaaa ttaaattcaa caacgacccc gcctaccata
     3901 ttttagtcac aatcttctcg cagatgtttt gattctctga tcttatatct gaaaactatt
     3961 ttcaagatgc tgagtaaaca ttcacatatc aaaacgaata aacactttct taataaataa
     4021 aagtactttt agttcattgg taatgcttgt tatctttcaa tgccatatat cggagtttct
     4081 cctaactgat ctcttgtttt tgtcgggtcg agagtaattg taaggatatt tttattgatt
     4141 aattttaatt ctgtttcaat attctctact ctttgatcct taactgtcat cgtaagctta
     4201 ccttttgttg atgaggtctt tgtattattg tcgtatgata ttccatcctg cttaaaatct
     4261 aacaattcgt atctttcagt gacggaaccg tctgcaggga ccactactag atccgtagta
     4321 aaatttttta tttccgttgg aacatttcct gtgttatcaa tatctagttc catccgccat
     4381 cttccagata ctacccacaa aggatccccg tcactagaaa attgaatact gcttacagga
     4441 ccatccaact ttaaaggttc aggggggttt gaagaagaat aagcaaatgg aattgttata
     4501 agctgttgat ccataactat aatgactaat gcacattgaa atattattaa tatcaagaga
     4561 ttaaaattat tcgtctttag catcaggtcc attaataaca aaaatattca aatataaaaa
     4621 gtataagata ctggtattta atccgtaatg aggctttata cataggagcg ctgacgtttt
     4681 taagtatgaa aataatttga gtttacctta aataggtttt aatcttgtaa tatctggtga
     4741 acaaattatc cttaattatg gttactcccg ctatgctact gataattggg gtagttcttg
     4801 caacctttta tcacgagtat gacactacca gaactatatt cccatctttt aatttgaccg
     4861 ttcatgacct tgaaaacata ggagggaaca taataagtgt tcaaaaagat cccaccggaa
     4921 atgcagtatc attagtatcg ggaaaatggc aatttaacaa gtcagctgct tctactggtg
     4981 aaatcgataa tgcatctata aaatttgaat ctgatttaaa aacgtacaat ctcgatggaa
     5041 tatcaactga agagatatcg ttatcaaatt ttacattatc taaatttaat tccaccggta
     5101 atgacgcagt tctcgatgga agcgtgaagt taaattcaaa ggacaaagat gctgacggta
     5161 ttgcaaatgc aaccgagatt cctttacgta tagttgtttc taacaaactt atctttaaca
     5221 tctcaagtcc atcagattta tttcaaaagc atttccaaga gtcgccgatt tatgggaaag
     5281 tcacttattc cgtaagggca gatggtgacg acaataaatc ttcctcatcc aggcgctctc
     5341 cagcaataag tactcaactt actggtggac ctgttgtagt tgatccaaac cttagggtcg
     5401 aactagtgac tgatcaaatt agttttcctt ccaaaatggc tatcatcggt gacaatgata
     5461 tactgatatt agaaaaaaac gaagggttag taaagcgtgt tttgaatgga atcgttcaaa
     5521 atgattccct actagatgtg gccgttgcca atggagtaga aagaggattg ctgggaatag
     5581 ccgtaaagaa aacaaatacc agcattacgc acgtcttttt gtactttaca gaatctgtca
     5641 aagacggtga tgatgttagt gagaaaaaaa cacctattgg taacagattg tataggtatg
     5701 atcttgtaaa tgacaaattg gtaaatccta aattgatctt agatcttcct tcaactccag
     5761 gttcggcgca caacggtggt gagatccttt tagatggtaa aggcaatatc tatcttacca
     5821 taggagatct caatcgtagc aatgccaagc ggtcaaactc aactataact acagttcaga
     5881 ataatcatga tggtttatat ccggatggaa gagcaggaat attgagaata actgaggacg
     5941 gaaaggccgt cggatcagga ataattggaa atgatcatcc actagacaag tactttgcat
     6001 acggagttcg gaatagtttt gggatggctt tcgatccatt gacaggaaaa ttatggaata
     6061 ctgaaaatgg tcctgaattt ggggatgaga ttaatttggt cgagccaggt ttcaatagtg
     6121 gttggaataa ggtacaaggt atctggattc ccgatgaaaa ttcacctgga aatattgcct
     6181 ctaatttttc cggtctagtt tcctttaatg gcacaggcaa gtatagtgag cccgagcttt
     6241 catggtatca accctcaccg gggctcactt cccttatttt cctgaattca acgaaattgg
     6301 gctcaaagta tgcaaatgaa atgctagttt cggattttca taatggcaat atttacaatt
     6361 tcaaattaaa caataataga acaagtttta ttttgccacc gccaattgct gacaaagtcg
     6421 ttaatacaaa gaacgaaaca cagagttcaa tctttgcaaa tggctttggt gctattatgg
     6481 atatggaaat tggacctgat ggatatctct acgtgctttc gctgtatcaa ggtggacctg
     6541 attgcgaccc gattagacat ccgaatcagc cctgtgttgc atatgacaaa tccataggcg
     6601 gatcattatt caagatatta cccaaatccg ttgttaatta gcatgtacgg ctgattcaac
     6661 aagattttgc ttggtagaac tagcatgaat gcgttgtttg tacttgatac acgttcttac
     6721 ttatcttggc gaaatgctca gataagtttt tgataactag cgatgatccc tctgaaagta
     6781 tcaatacttt gatttaggac aggttcagga tatctttatc gtgattaaga ctaattatca
     6841 aatcatattt attactccat caaggatccc aatgggtttt atgattgaaa gtcatattct
     6901 actctaatct gctatctcag caaatatttc tgcattataa tgtcgaagga tgtaaataaa
     6961 gggagattgg caaatatcat gatatcaatc gtcattatta gctcaactgt atttatgaca
     7021 tctttatgac gggccgtatg ctaactaatt tactgggaaa cgttgacgta acccattgaa
     7081 catgcattcg ggcaacaatg ttggacattt taactggctg ctggaagttt aacaacccaa
     7141 ctttaaaata gtgtaaaaaa ttactggact tttgatgtct ccaaggcacg agcgtgtgcg
     7201 aaacatcgtc attttattat tgccattgat actttcagct tacacgcatt tatggaatcc
     7261 acttggtttt ccttcaattc atatagacga ggctcattac atgcgcaggg ctatgcttgt
     7321 tattgaaggc atgggtccac aagaatcagc atcaagtgga tatcctcgca catatgacca
     7381 tccttacttt ggacaattat ttttaggagg catactgtca ctaataggat acccagacat
     7441 attgaatcca tcttcagatc tacagtcaat agaatcgcta cacttggtgc caagattgct
     7501 catcggtttg ttggccattg ttgatacctt attggttttc aagatctccg agagaagata
     7561 cggcatgact gtagcattta ttgcctcagt cctcttcgcc gtaatgccca tgacatgggt
     7621 tttaagacgc atctatttgg atactatctt aatgccgtta atgttgtcgt ctatcttgtt
     7681 cgctgtgtac ttaaggcgaa acgataattt tgtaaaaacg gatggaacga ctaaaggtga
     7741 gaaatgtaag ataggtcaag ggactttgat actactttca gggattttcc taggattggc
     7801 aatttataca aaggctcctg cattcacaat gatgcccctt gttgcttcac ttgtattttt
     7861 taattcaaag aaaaggttca agagtcttgg catatggttg atacccgtaa tcttgattcc
     7921 actgttatgg cctttatata gtgttgttat tggtcaaact gatctttggc ttgaatgggt
     7981 attatggcaa acggacagaa acagaccgtt atcattatcg cttactgatt tttttctgat
     8041 tgatccgtta attaccataa tagggattgc tggttttatc tggacaggac tcaagaagga
     8101 tttctttcca ttaatgtggg tagttccctt cctaattttc tcttacttca ttggatgggt
     8161 ccagtacttt cacctaatag tgatttttcc ggctttttgt attgcgtctg cagttcttat
     8221 cgatagactg caaaaattcc tggttcaaag atttaaaaag tcaaagaggg ttaagccact
     8281 ctctcatgta acattcctta tgatagtaat atttggacta ataatttcct cgattcttat
     8341 caactcagat gtaaataatt catattatga aattcatgct gccatatctg cgaatataca
     8401 gaaaatttca acttttagtg gagaacaaag tggaaatcta acagtaatag gaagtcattg
     8461 gtgggtatgg gcttcttatt ggattaccca atatgttctg aataatgatt acaaattgat
     8521 agatccacat ttcgatccaa gattcaaact acccgtaacc acagataacg tagttttcat
     8581 tgatgatgaa aaattcattg actctatttc cagaaacgtg gagagtgata accttctcga
     8641 tataaaacag ctgcatgatg agtctagcat tataacaaca ttttttgata atgttactag
     8701 taatgataac ggcgtatatc cgaataatat attttcaatt atgataaata atgaaaacca
     8761 tccaacagga gaggtagtaa taagaaggaa cttccagtga taagaatttt atgaatgagg
     8821 ttacaccatc gtcgatccat tatggggtat agaaatagct ggcttgctct atcatttaat
     8881 caaattctga tccaaccgtt gttaattagc attcattcat attgttcata ttataaaact
     8941 gtattaaatt atcctagctt caaattgcaa aaatgaaata tgaaaagtca taccaacgtt
     9001 cctaacagat tatcgctaaa tagaaaagtc taaataaaaa tcaaggaaat tcatacgatg
     9061 ttgtataaga tgagaattca tgttgatata ttttataatt tttagtacgt acaacgaaca
     9121 tttttttaat tggcaaatat acgatctatt caactgagag gactctgaag aatctgtgaa
     9181 taccattaaa gcaatagatt caggatccca ttgagtacta agcctaatac tgtgccactg
     9241 caaatgtatt aataagtcca aaatgatact gcatgcgttg gaaattgaaa aactagttgc
     9301 ctattgggca catggttcca tttcgtttaa ttggaacctt agttttagag ttatttcttt
     9361 gaacgaatat agtgttcctc aaatgtaaaa gtgatttaga tggtacatca gttgactctt
     9421 ctttttgaaa aacgtcgtta cttaataaca ataatggtgt ccattctttc cggattatct
     9481 gtttattccg ttctctcgca tttatctatt tcacccagga ttaccatccc tctatcgatt
     9541 attatttctc tcattatatt gggattaata aggtattact ctaaatcatc catagatact
     9601 gactacatac aggacagaga ttcaacacaa gtcggcaacc aacataatga tattcaaact
     9661 agagttgaag gtcagaaaaa tcgaagtcaa tcaattatct tttttgttac tatctttata
     9721 gtatttctag tgatttctgc ctttacttat aacgagaatt tgcaaatatt taccagttgg
     9781 gataacattg aaccaataga actaggacaa ttattttcgg gtgttatgct ttgcttcttt
     9841 atgccgggct atgcggtggt acttattata acaaaaaatc ataagctgaa tcctgtccta
     9901 tctgtattac ttgcatgttt atgcagtatg ctaattacag gtgcaatttc atacatttcg
     9961 gcgctatatt ttgatattcc aatatctgaa aataaaactc tatttattgc aatatacata
    10021 atcatacttg tcagcctttg tgtctattat cggaccagta gaatatggct tcctgtaaat
    10081 caacaaattg attattattc ttgttaccat tttctattac cgcttggtat cagattaaag
    10141 aaatttctta aaacaaatgc atctgaattg ctcgtatttg taagccttct gacgctaata
    10201 attggtgcaa cgtactacct ctatggcgga attacaatag gcgatcaatg gtttcatcag
    10261 ggacgcgcac ttctctttat ggaagggtca attaaagagg caacactttc aaatgcagaa
    10321 atttcctatc ctccatttca atctgctttg ctggccgccc ttactactct ttcagggatc
    10381 cctttagtaa atgcttatgc ttccattgca tttcttaata tgacaccgct cttcgcattc
    10441 tactacttct ttacaacatg ggtttcacct gcaatgagaa gatcgggttt acttgcatgc
    10501 tcgttattta cagtaagctc tggatttggg tggatttatc tgttaagtac gttaggtaca
    10561 gaaccgataa tttctgagca gtccagcctg aatattctag gaaacatgag gtcgttagat
    10621 atcattggga cgagtaactt tgtcataccc acagcacctg atttcagtac aggactaatt
    10681 tacatagcac tgccggcggg ttttctactt ctcggcatcg tacgtgccag aattaacatg
    10741 acatttacca atcttctatt agttgccatt gtttcagtcc ttgggatcat atctcacgat
    10801 gaattttata tttttgtcat aatatctgcc attgtaccca ttttattcaa tctaccaggg
    10861 agaaactatc aatatcttgg tctcttagtg tcattttcta tcgtctattt aatggatatc
    10921 cttgctcctg caaaattctt tacttcaaat actattatgg agattccatt gttctaccta
    10981 atactattct ttgttgtcat ttcttggacg gtatatacct tcagaatacg tttactctca
    11041 tttagtaaag caatatcaaa ttccttcaag ctacgttcat ttctaggcaa tgatttacgc
    11101 attcatttca ttataggtat gtttattact ttcatggtag tctacattta tctactgagc
    11161 tttattgtaa taggtcatct ttcccttgct gacataaaag atcagacttt tgacagtaac
    11221 ttgccttggt atttatatcc aatgaggatg ggaatcgttg gtctttttgg ggtagcattt
    11281 gtcctgtatg cattttttag aaaatctgaa aaatatgctt atgtttttgg catattggtt
    11341 gtagtagctt tcttcaccgg gccatactac gatgaacata gattcagtaa atatgttatg
    11401 gtaggaatga ttggattagc aactatcgca atttttaaaa tacttaatca aaagcatggt
    11461 cccagtaacc gtaacagtat aataataggt tcagtaatcg taattgcttg tctttctaat
    11521 ttactattta tcgggtatgg ttcattgata ttgcaaacga ataattatta tgagacttta
    11581 ccccgtagaa actttccatc tgtttcggaa cttaatttat ttaatttttt tgagtctaac
    11641 tctgatgtag attctaaaaa atataacgtt gttagttttc ctgatgaata taatagatgg
    11701 caggatggct tgatatcaaa aattcaggct ttctctggat tgccatataa taagatccat
    11761 caaatgccat tagtgctaaa cgcatcaacc atagatgaat tttaccgcct tttagacgcg
    11821 actgattcca gatatatagt attgtcaaaa gataatatta gtaccagaga tattttgcca
    11881 gagcccgtta gttttgcctt gcaatatttt gaacatgtct acgaggatca aaattatgta
    11941 gttcttgata taccagacat aaaaggtccc tcttcatcat cagccgaagt agcactactt
    12001 tacgaccggg aagatcatcg aatgtcacca agtatgccag ttacaaaaga attgaaatat
    12061 gataaaagtg cattctccgt gaataatgga tctggaaatg caagcacaaa cacgcactat
    12121 aaaacaacaa tcctaaaagg atcaaactta gataagggag ttagcctatg gtcaaaaaaa
    12181 atccaatctg aaaaccctgt gaattacatc gaagcaaaat ttcgaataat atccgagaac
    12241 aaggacagga acaatgatgt aaaactgaaa tggtcacaag gagatacaga gtattatgta
    12301 tcattgtcaa aagccggaat tgagttatat cgacaatcag aaaatcaaag tgacaaaacc
    12361 agtttattta agaatatgga aatagaaaaa aaggatcatt tttggtacac aattagaata
    12421 gaaaacctgc ctaatacaat aaatatatac gtaaatagtc tgccaaaaat tcacgtttca
    12481 ggagatataa ttggcaacaa tactgagagt atctccaaag taggatttac ttcttatttt
    12541 aacgacatag aaattgcacc gataaatata ggaagcatta ctgaaaatgt tcaaaaaaat
    12601 gataatcaga ttaaatatta caatttcgat ttcccaataa gcttatttgc gttatctgaa
    12661 attggatacg atactttctc gaaaaatgat ttgtcagcgc tctcaaaaaa catagtagta
    12721 acgtctgata cagaatttga tgaattcata ttcgataaat atttgagtta tatacgcaca
    12781 ggtggaaaag tacttgtaat caatccccat gataattata atggtacgtt tagcaaacta
    12841 ttttcaattc aaagtaacgg tagtatccta gaaaaattca caaacatagc ttacaataga
    12901 aacaaaagta tttttctaga tgttcaagga ttggtaaata gtagtcaagc ggtactgtct
    12961 ccggatataa atataattgc atcttataag aatagtaaaa atcaaacgat tgcccctttt
    13021 gcaattgaaa aaaattttcc taatggaggc aaaatcatat tgataaatgc aaagccatat
    13081 tttaattcaa tatctgagta tcctaaaagg tattatctta ccctatcaaa tatatcaaag
    13141 ctcttaaatc tagaattgga taaaatcgag agacagcaag atttatctgg atatcccaac
    13201 tcatttgtgg gaagaatgaa tttgtctgga agtgttatac taaatagctc atcgttatca
    13261 ctattatcat caaacgaatt aaaaaatcac cctgtaatta acactagccg aatcacatta
    13321 tatgattatg agataggatc taatactact ttaaaagacg cgcgtataaa agatctgaag
    13381 ttgggtggca attatagcgc atctatacaa gcaaatggtt caatagaatt gccaggaagt
    13441 gaatctaact atggttacct aaatttcttg acacaaaata aagatagtgt caatatgaga
    13501 gttcatcttc ctagtaacag attcagcttt atggaaattt cgttccaaaa tggtactttg
    13561 tcggatacga tcaggattag caatggttct gtagttgacc tttatgaagt cgaatccgca
    13621 tctccattag aaccgatttc catcttactc aagaatccaa agatcatggt caaaggaaac
    13681 acaagtattg aaaattctaa cttcgatggt tatcttaacg taaggggtaa gttgaatgca
    13741 gacaacccat tcaatatgga aggtcaacta aaagccaagt ttgactttat cgatcattac
    13801 catttgccag atagtaataa tacaagaatc aattatatat cgtatcttca ggatatagtg
    13861 actgacggca aaatagacaa ataccaaaca ctagtaaagc tacctggcga tataccatac
    13921 aagggtgacg agattccatg gaaaaacata ttcacctctg caagcaacgt catattactg
    13981 atgctactaa ctgcagtatc tgtaataata agttggcggt tctggcccaa aataaagtat
    14041 gatggaaata aagtctagta ctacctcctt tgtcgttttc actttaacgt acgccttgag
    14101 tctattataa ttaaatgccg ggcaatataa tgcatcaggt tctgggcaat atacagatgg
    14161 tacgatacta aataaagtaa ctatattctc taatttagat agataccgtc cttgtaaata
    14221 tcataagtaa tgtcaatctt atctccagaa tactgaaatt acaccaagac ccataatgca
    14281 taggcctccg tatgcaacgg gtggcacatt gacaaaaaag ccaacgattg ccaaaccaat
    14341 tccaccgcag atagtgatta attcacccat tcttcgttga tttttcatcg tcaaaaaaaa
    14401 gttgcggata gctattataa aagcttatgt aaactcgtaa tattcttaaa tcatgttgaa
    14461 atattactgc ctaatttaga atatggctcg tttgcaataa aataaaatat ccagggtaag
    14521 catttaagtg agctgagcaa tacttttgtg ttggttaaaa tcttatacca gaacccgcat
    14581 gcaaatgaag attctgataa tttttacata agcattccaa aggattggag tggcggagcc
    14641 gatgacgagg ttactgtgat tgtggatgat gtatgtgtcg ttgttccaca aacgattgcc
    14701 ggtgccacgg gtgaattaat agtgttaaga ctgttagaag ctatgataga aggtgacgtt
    14761 attgatgctg gagatgttca gaaagctata gaacatatat tataggaata aaaatgcctg
    14821 taattcttta ctatgcaagt ccatttaaga gattgaagtt gtcaacttgg aacgtacgac
    14881 tagttcgtag cttgcgttaa agtctcctta acctgcagta tatttccatc gcttggattc
    14941 agttccagtg ctctatctat tagtattatg gcttgcccgt attgaccaga gccgtataga
    15001 gagcctgcct ttccacccat cgcataaacg tcgtttggat caattgttaa tactttgtcg
    15061 taagttacaa ttgcttcctg atatttaccc atgtctctaa gagcagctcc cttgctcacc
    15121 aatgccatta aattggttgg gtctatactc aatgctttat caagccaagt taccgcctgc
    15181 cttccatcac cctgatttac aagttcagta cctttttgaa ctagcgctgg aacattgttc
    15241 tgatttatag agagagcctt atcataccag ttagaaagtt caaattccga gccaaaagca
    15301 tgtgctggat aacctaggac tgatattaac gatacagcaa aaaccggtaa cgatattgca
    15361 aaggatttag caactttgtc tttgtgacca gcatataaat tcttactata gcttaatctt
    15421 gatgtttgta tcaatgcgaa gcttctccaa tgagaatgtt gccgtataca gcctttagtt
    15481 tgttaaagat tctgatacaa tcatggctat caaaaatata gttttcacct tgaatttcca
    15541 ttggtattat tttatttatt ggaatttctt tcctacatag atcacaatat ttaccacttt
    15601 tcataatgtt caatagatat gatattataa gaaaggttcc gttacaaagt actgaaaagt
    15661 gttataatgt gttagatagc aatatatgag cagtattata tcacaaatta aaattaatct
    15721 tatagaagat agtatctaca gtatttttat agtttatttg taaaaggttc tcaacgcaac
    15781 cggaaacaac tgatgggaac ttgattgttt cttgttcatc attcaatcat tccaacttcc
    15841 tcccatcagt tgtttattaa ttttttaaaa acttgacaaa tttcgtcgaa aataattttc
    15901 tgttacaaga taaattttca agtgccggtg cgaattatca ctatcttgtc agttccagat
    15961 tctgccccca atacctctcc tggcctccct agcaattgac gtactttagc atcagcagta
    16021 ggtaatggaa atgattgaaa tttttctgag gatgggtcga aacgtatcat agcattggag
    16081 ccaaaatcac taatccacac aatatcttta tcatcaacaa atacggcgta tggctgaggg
    16141 ttttgacctg gcaatttcca ttctttccat atgttagtaa cagggtcata catacccaaa
    16201 ttgccagcgt tccactctgt taaccaaagg cgacctgcag aatcagacca tacacgtctc
    16261 gccccttggt cagatgtagg tggatctagg acagttgcat ttccagtttc taagtctatt
    16321 tgagcaatgt agctgccagc caatgataca aaatatactt gcccttctgg ggtagtagag
    16381 atgccatatg gtccctgtcc tctcggtgcg tcaaacactt ccatatcgcc agtacttgga
    16441 tccaatctac catagatccc actttggcca gtgaaccata aaatgccctt gtggtcaaag
    16501 gtggccgtgt tgaggtttgc atatcctatg ttttcgggca gtggaaacaa tgtaacgttc
    16561 tgagtatcag gatcaactct tacaatggca ttcagacccc cgtcagtaat ccagggtgct
    16621 tcatccggac ctacaataac tccatgtgga gcggatcctt gccctaattc aatatgatgt
    16681 gtgctccccg agactggatc tagtaaccct agctcccctg atcgctgggc agtataccaa
    16741 actgatccat tcttagcagg tgctacatca tgaggatgag atcctgctgg gactgagaat
    16801 tcttttagca gaggatccgc aatggtctgt gccgatactg tatgttgaac tagtggaata
    16861 acaaagattg atactagaag taagcacaac ttgcttgcca ttgttataac aatactagca
    16921 tcctatttta ttttaatggg cccaagggga tttgattgaa tattgtagcg gaactaattt
    16981 agagtaccta gtcttgcaag aacaaaatcc aaaatgtcaa atgaagataa aattcggact
    17041 atattattat tccttatgga gatagcctcg taaaataacc cgatcctgta tgccagcatg
    17101 agcgtccatt tgcacttcaa ttttgccctc tgatgaaact acaaaaccac ttatcatctc
    17161 ctcgtttatt ccaccttgac ccgaatcatt taatgtaatg caggaatgaa aaactccgct
    17221 ccttccaccg cctgctatgt ttttaataaa taattcaagt gtatggaatt cccccggagg
    17281 tccaccacta atcagccaat ccacatctgt tacaaccaag acctcctttg gtggaatttt
    17341 gaattcttca gtcccaactt gaagcccgtc agggccaatt ctaaaaaaat caaaatctgc
    17401 acccg
//
LOCUS       DASPFX010000202         3995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1527496, whole genome shotgun sequence.
ACCESSION   DASPFX010000202 DASPFX010000000
VERSION     DASPFX010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1527496"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VD694_04355"
     CDS             complement(<1..313)
                     /locus_tag="VD694_04355"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HXW11971.1"
                     /translation="MKAAFIASFVTIIINFLVAIAISLPVFDERSANAQSTLQNAGNS
                     SNSTLFVAGNAQAMIKPDKVTLSLSVETTNTTANAALNANSEAMNKTLDVLREAGVME
                     NE"
     gene            1018..2034
                     /locus_tag="VD694_04360"
     CDS             1018..2034
                     /locus_tag="VD694_04360"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HXW11972.1"
                     /translation="MTKQLAFGVHLPVMGFDNSSTRNGGKEKSHSREQVLSYAIKAES
                     LGYDSLSVNDHIIFRTSWLDSISVLAAVAAVTNRIKLGTSLLNIVVRNPVICAKSLSA
                     IDILSSGRLFAAGVGPGSHKGDYDVCGIPFEERWSRFNEALEILKMLWNNNYREDISS
                     NMKPPTSKPIDYNGKYCRLEKISIEPKPFQKPHPPIFIGTWGSSEAGLKRAAKYGDGW
                     MASAYNITPDKFKEKWKVLLSYREVLHKDTHSFENSIVSMFGYIDDDRNKVHRMAKDV
                     LSPALGRPTEELENSLLFGSTDHCIEKIRAFYEAGAKRILFWPVSDYLEQIETFRDEI
                     VPYY"
     gene            2276..2590
                     /locus_tag="VD694_04365"
     CDS             2276..2590
                     /locus_tag="VD694_04365"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HXW11973.1"
                     /translation="MHNPVILARRFATLDILSEGRSIAGFGIGWSKDEYQASNIPFQN
                     RGKRADEFIQVLKRIWTDDVVEFKGKYYNIPASKIGPKPIQKPHPPVYLGGLAQIHFL
                     EL"
     gene            3015..3920
                     /locus_tag="VD694_04370"
     CDS             3015..3920
                     /locus_tag="VD694_04370"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HXW11974.1"
                     /translation="MVQTDTFRSRPGRIEDADKVGKIIFEAFSAVANKHSFPPDFPSV
                     DVARGLASSLLSNPRFYSIVAEDNTSNGGEDKNSIVGSNFLDERSNIVAGVGPLTIDP
                     KYQNKGTGRQLMINVLERAKNKNFPAIRLLQASYHSRSLALYTTLGFEVREPISNMQG
                     KPIQEAIPGRSVRAATESDTKSCNTICKTIHGHDRNGELQDSIKQGSAKVVLHENKIT
                     GYTCGLTFFNHSVGLTNDDLKALISSATNDDSYGGPGILIPSRNTQLFRWCLNNGLRL
                     VQQLTLMTIGLYNEPAGSYMPSILY"
BASE COUNT         1313 a          687 c          828 g         1167 t
ORIGIN      
        1 tctcgttttc cataacaccg gcttctctta gcacatcgag tgttttgttc atagcctctg
       61 aatttgcatt caaagctgca tttgcagttg tatttgttgt ctcgacagat aatgagagtg
      121 taactttgtc tggttttatc attgcttgtg cgtttcccgc gacaaaaagt gtgctgttgc
      181 tgctgttacc tgcattctga agagtacttt gagcgtttgc actacgttca tcgaaaaccg
      241 gcaatgatat ggcgatagct accaaaaagt taatgataat agtgacgaaa gaagcaataa
      301 aagcagcttt cacggagctt ttcttattac tggtgattaa tcaacgtttt tatcgtgtga
      361 cctgattgcc ttcatggtta atcaatccat aacctcccgg ctcaaagaga agcttctagt
      421 taataatggt cataagataa taataacaac aactaagcgg cagacctgag aaatcgttat
      481 acctttggaa gctgaatgcc aatcatcagg tggagaaata acttagggaa tcttgttttc
      541 gaagtcttta gtattttaaa gtttttttat ttgtaaggca aaggtctcac aaagccgcag
      601 ggtgccttag aataaattca actgccgcta ccaggtgtgt tgtttgttct tcctgcggcc
      661 ctaaaataaa aaagagccgt aggattggac tcaaactcat ggggagacat tgagtgtttc
      721 tacggccttg gaacttttgt catctattcc cttcaacctt gggcaaactt gctatagttc
      781 cacgcataat aagtaatagc tatcaatatc gagggggagg ggatatggct taagctttgc
      841 ctgaccgtga gacaataata tagttagact gcaaagatag gaacctacac gattggcgtc
      901 ggtggtgggt ggtagttacg attccggtta tccggtagcc aaaacatact gtctttgttt
      961 atatcagttt aaaaatactt aaactctttt ttatgataca ttgattaaat tgtctgattg
     1021 acaaaacagc tagcgtttgg agttcattta cctgttatgg ggtttgataa cagtagtact
     1081 agaaatggtg gaaaggaaaa atctcattca agagaacaag tactttcata cgcaataaag
     1141 gcagaatctc ttggatatga ttcactgagt gtaaatgatc acattatttt cagaaccagt
     1201 tggttggatt cgataagcgt tttagcagca gttgctgctg tgactaatag aataaaactt
     1261 ggtacatctc ttttgaatat agtcgtaaga aatcctgtaa tttgtgccaa atctttatca
     1321 gccatagata ttttatcctc tggaaggcta tttgcagcag gagttgggcc tggctcacat
     1381 aaaggagatt atgatgtctg cggaattcca tttgaagaga gatggagcag gtttaatgag
     1441 gcattagaga ttttgaagat gctttggaat aacaactata gagaggatat tagcagtaat
     1501 atgaagccgc ctacttcaaa acccatagac tataatggca aatattgtcg gctagaaaag
     1561 atctcgattg aaccaaaacc atttcaaaaa cctcatcctc ctatcttcat tggaacttgg
     1621 gggtcatcgg aagctgggct aaaaagagca gcaaagtacg gtgatggttg gatggcctct
     1681 gcttacaaca ttacgcctga caagttcaaa gagaaatgga aggtactttt atcctatagg
     1741 gaagtactgc acaaggacac ccattcattt gaaaattcta ttgtatcaat gtttggatac
     1801 attgacgacg ataggaacaa agtccacaga atggccaaag atgtactatc ccctgctcta
     1861 ggaagaccaa cagaagagtt agagaattcg cttctctttg gttccaccga tcattgtatt
     1921 gaaaaaataa gggcttttta tgaggctggt gcaaagcgta ttcttttttg gccggttagt
     1981 gattatctag aacaaattga gacttttaga gatgagatag ttccctacta ttagaccaaa
     2041 tttagagatt aacaaaaact aggagcataa agagaggaaa atatcatgat aaatcagtag
     2101 ctcttaaccg ctcttaagtt aattaatgtg atattcaagg gtaatcggaa aattttgagg
     2161 aagatggaag tcttcccatt gaataccaga ttatgctaga cccattagag acgcttacct
     2221 atgtggctgc aaatacaaac aaaattgcat taggaacatc cgttatagat atgctattca
     2281 taatcctgta atattggcaa gaaggtttgc tacacttgat attttatcag aaggaagaag
     2341 tatagcagga tttggtatag gatggtccaa ggatgaatat caagcatcta acatcccatt
     2401 tcaaaataga ggtaagagag ctgatgagtt tattcaagta ttaaaacgaa tatggacaga
     2461 tgatgttgtt gagtttaaag gtaagtatta taatatacct gcatcaaaaa taggtcctaa
     2521 gcccatccaa aaaccacacc ctccggttta tctggggggt ttagcccaaa tacattttct
     2581 agaattgtaa attatgacac aaatggctgg ctagctgtag ttggaggacc acttgaatat
     2641 cttgataata ctataaagac cataaaagat ataacaaata aagcaaataa ggatccaaac
     2701 aagtttaagg taattctttt agcacatctg aacgtagctt tagattcaaa aagtcagtca
     2761 acaacaacaa caaatgaaga ccaaagattt ccattcactg gaacaataga tcagataggc
     2821 aatgatataa agagaataaa acagatggat atagatcata taatatttgg atatgtcttt
     2881 attccaatag gtagagatgt taacaagatg ttagatctaa caaaacagtt tgccaaattt
     2941 gctaggtaat aattctaaaa taaaaagatg aactaaaaga atataacggc tactccataa
     3001 gattgtatat tcatttggtc cagacggata cctttagatc gaggcctgga aggatagagg
     3061 atgcagataa ggtaggcaaa ataatttttg aggctttttc agcggtcgca aataaacata
     3121 gttttccgcc tgactttcca tctgttgatg ttgctagagg tctagcgtct tcattactat
     3181 ccaatcctag attttactcc atagttgctg aggataatac tagtaacggt ggtgaggata
     3241 aaaatagtat tgttggaagc aactttttag atgaacgctc aaatatagta gcaggagtag
     3301 gaccactaac aatcgatcca aaatatcaga ataaaggtac gggcaggcaa ttgatgataa
     3361 atgtactgga gagagctaaa aacaagaact tcccagcaat acgtttactc caagcttctt
     3421 atcacagtcg gtcattagct ctctatacta ctctagggtt tgaagtaagg gagccaatct
     3481 caaacatgca gggaaaacca attcaagaag ctattcctgg aagatcggtg cgtgcagcaa
     3541 ctgagtctga tactaagtca tgcaatacta tctgtaaaac gattcatggt catgacagaa
     3601 atggcgaact acaagatagt ataaagcaag gaagtgctaa agtggttttg cacgaaaata
     3661 aaattacagg ttatacttgc ggattgacat tctttaacca ttcagtagga ttgaccaatg
     3721 atgacctcaa ggctctgatc tcctcagcaa ctaacgatga tagttatgga gggccaggta
     3781 ttctaattcc tagtagaaat acccagcttt ttcgctggtg tcttaacaat ggactgaggt
     3841 tagttcagca gcttacccta atgacaattg gattgtataa tgaacctgct ggttcctata
     3901 tgccttcgat tctgtattga gaatcatgga acgttgcacc tacagaatca gcggctgaca
     3961 ttataaagac ataatattcg caggaatatc acatt
//
LOCUS       DASPFX010000203         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_872683, whole genome shotgun sequence.
ACCESSION   DASPFX010000203 DASPFX010000000
VERSION     DASPFX010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872683"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1087
                     /gene="dnaJ"
                     /locus_tag="VD694_04375"
     CDS             <1..1087
                     /gene="dnaJ"
                     /locus_tag="VD694_04375"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HXW11975.1"
                     /translation="LNVDRKATKEEIKNKYRKLALQFHPDRNKNAGAEEKFKEISEAY
                     AVLSDDEKRKKYDKYGHVGSEEVFRGSESNFDEIFRDIGFGGIKDIFEQLFGGGFSGR
                     NRSDPFGFGFNFGRDNRGEDTVIDLSLTLEEIISGKNETVEIPALEKCSVCNGSGCSP
                     GTKRKKCSSCNGLGQTKRVFNENRFSTFVTVETCRTCKGVGEIIEKPCKNCGASGKVA
                     TRTKIQVEIPPGIDDGMTLQLSGKGISGRNEVPGDLYIRIHIKPHQIFERLENGNILY
                     LLNLKYTELVLGTELVLPTLYGSEKLKIPAGTQVDSIFRLRGKGIPVHGQRSKGDQII
                     KIKLEVPTKLSDRQKWLIKELDSTKNI"
     gene            1134..1718
                     /gene="hsp20"
                     /locus_tag="VD694_04380"
     CDS             1134..1718
                     /gene="hsp20"
                     /locus_tag="VD694_04380"
                     /inference="COORDINATES: protein motif:HMM:NF041800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HXW11976.1"
                     /translation="MSTPFDEWFGRRRTNSWFPDVDSMMKEMEKLMQEAVKNMDQNVP
                     KNLIRERKLDDGSTVREMGPIVYGYSFKIGEDGKPIVRKFGNLNTFPSSLTGRFSVSD
                     QREPVVDIIRDVDKLKIIAEMPGVSKNDLRITANENSLTIESISGERKYSKKIELPDQ
                     IEPSTGKSTYKNGILEVAFKLKDSKEDGVSINVE"
     gene            1822..>2189
                     /locus_tag="VD694_04385"
     CDS             1822..>2189
                     /locus_tag="VD694_04385"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HXW11977.1"
                     /translation="MKAIEAVDVTKKYKGSSFFAINNISLNIEPGRIFTLLGRNGAGK
                     TTFVRICATQLLPSSGTVKIFENDLIKDTEKIRNDISIVPQEGRPLRALTPWDHVYYW
                     LRIRGVSKDDSYTRTQKILK"
BASE COUNT          827 a          303 c          460 g          599 t
ORIGIN      
        1 tttgaatgtt gatagaaaag ctactaaaga ggagatcaaa aataagtata ggaaattagc
       61 ccttcaattt catccagata gaaacaaaaa tgcaggagca gaagaaaaat tcaaagagat
      121 ttcagaagcg tacgcagtgc tatctgatga tgaaaaaaga aaaaaatacg acaaatatgg
      181 ccatgtagga tctgaggagg tctttagagg atcagaatca aactttgatg aaatcttcag
      241 agatattgga tttgggggaa taaaagatat atttgaacaa ttgttcgggg gaggattttc
      301 tggcagaaat agaagtgatc cattcggatt cggatttaat tttggaaggg ataatagagg
      361 agaggatact gtgattgact tgtcgcttac attagaagag ataattagtg gaaagaatga
      421 aaccgttgaa atcccagcat tggaaaagtg ttcggtttgc aatggaagtg gctgttctcc
      481 tggaacgaag cgtaagaagt gttcttcttg caatggactt ggacaaacaa aaagagtttt
      541 taacgaaaat agattttcaa ctttcgttac tgtagagact tgcagaacat gtaaaggtgt
      601 gggagagatt atagaaaaac cttgcaaaaa ttgtggtgca agcggcaagg ttgcgaccag
      661 aacgaaaata caagtcgaaa tacctccagg aattgatgat ggaatgacac ttcagttaag
      721 tggcaaagga atttctggga gaaatgaagt tccaggtgat ttgtatattc gaattcacat
      781 aaagcctcat caaatttttg aaagacttga aaatggtaat atactttatc ttctgaatct
      841 aaaatataca gagcttgtat taggtaccga attagtattg cctacgttat acggaagtga
      901 gaagttgaaa attccggcag gaacgcaagt tgattcaatt ttcagattaa gaggaaaagg
      961 gatacccgtg catggccaac gatctaaggg agatcaaatc ataaaaataa aactagaggt
     1021 gcctacaaag cttagtgata ggcaaaagtg gctaattaaa gaattggata gtacaaaaaa
     1081 tatttaatca caagattgta atatttatat ttaaacaacg taacttaata catatgtcga
     1141 ctccgtttga tgagtggttt ggacgaagga gaactaattc ttggtttccc gatgtagatt
     1201 caatgatgaa ggaaatggaa aagttgatgc aagaagcagt caagaatatg gaccaaaatg
     1261 ttccaaaaaa tctcataaga gagcgcaaac ttgatgacgg ttcaactgtc cgcgaaatgg
     1321 gccctattgt ttatggctat tcattcaaaa taggagagga cggaaaaccg atcgtcagaa
     1381 aatttggaaa tttgaataca tttcctagct cattgactgg gagattttcg gttagtgatc
     1441 aaagggagcc agtagttgat attattagag atgttgacaa attgaaaata attgcagaaa
     1501 tgcccggtgt aagtaaaaat gatttaagaa taactgccaa tgaaaattct ctgactatag
     1561 aatcaatttc aggagaaaga aaatatagta aaaaaattga actacctgat caaattgagc
     1621 cgtctacagg aaaatcaaca tacaaaaatg gaattctaga agtggccttc aaattaaaag
     1681 attcaaagga agatggagtt tctatcaatg tggagtagat cagattattt gttattgccc
     1741 actttcaaaa tcaacattat ctgttctcaa taacatcctt aagataccca taatacgaaa
     1801 ttaatactgg aatgttttat tatgaaagca atagaagctg ttgatgttac taaaaaatac
     1861 aagggatcat cattttttgc aatcaataat atctcactaa atattgaacc tggcagaata
     1921 tttacacttc taggaagaaa tggtgctgga aaaactacct tcgtaagaat ttgtgcaacc
     1981 caattgttac caagttctgg aactgtaaaa atatttgaaa atgatttgat taaggataca
     2041 gaaaaaataa gaaatgatat atccatagta cctcaagaag gaagaccact tcgagctctt
     2101 actccatggg atcatgttta ctactggcta agaattaggg gtgttagtaa agacgactca
     2161 tacacaagaa ctcaaaaaat tcttaaaga
//
LOCUS       DASPFX010000204         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1901714, whole genome shotgun sequence.
ACCESSION   DASPFX010000204 DASPFX010000000
VERSION     DASPFX010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1901714"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..572)
                     /locus_tag="VD694_04390"
     CDS             complement(<1..572)
                     /locus_tag="VD694_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HXW11978.1"
                     /translation="MHATDTSPGLKRSVTLFQAIMYGIGLILGAGIYVLIGDVAAIAG
                     NAMWISFLLAAAIASLTGLTYAELSSIFPKSAAEYVYVKEGLGSNFMSLFVGCLTIFV
                     AITSAATVAIGFSDYLAALLPQYPPILYALALVLVLSFLNYHGIRESVWVNSIFTIVE
                     VSGLLLIIVAGLSIGSVTDTNYFEMPSSLY"
     gene            694..1380
                     /locus_tag="VD694_04395"
     CDS             694..1380
                     /locus_tag="VD694_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HXW11979.1"
                     /translation="MEYSVGNFVYGAIDGAVTTFAIVTGVVGASLSPSIIIILGFANL
                     LADGFSMAVGNYLAVKTQNEFIQKERKREEWEIDNRIEEEKQEIREIYSNKGFKDELL
                     DEIVRIITSRRKVWVDTMMREELGLIEGKHSPIVGAGNTFVGFNAIGIIPLIPFIAVY
                     LSGSSISISNALIYSVLATASSFFLIGSIRGKVVHKPMLISGLNTLLIGGIAAVVSYF
                     VGYTLSVVIG"
     gene            1499..1918
                     /locus_tag="VD694_04400"
     CDS             1499..1918
                     /locus_tag="VD694_04400"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW11980.1"
                     /translation="MKHKRTSSVLVAIDGSKYAEKAFVYACELSSMKNSPLIIINVVE
                     EYTTTGYSVLKELKMSSNKMLREYKSRAQSIGIQKPITIHSVGNAVEEILKIANRKYV
                     DTLVIGSRGKYGTSEDMLGGTSYKLIHYSKCTVTIVR"
BASE COUNT          753 a          364 c          461 g          661 t
ORIGIN      
        1 aaataaaggg aacttggcat ttcaaagtaa ttggtatctg tgactgagcc tatggacagg
       61 cctgcaacta taattagtaa gagtcctgaa acttctacaa ttgtaaatat gctgtttacc
      121 cataccgatt ccctaatccc atggtaattt agaaatgata atactagaac taaggctaat
      181 gcgtacagaa taggcggata ttgcggcaaa agggcagcta agtaatctga gaatccaatt
      241 gctacagtcg cagcagaggt tatcgctacg aaaattgtta aacagcctac aaatagggac
      301 ataaaattgc tacctagacc ttcttttacg taaacgtatt cagcagcgct ctttggaaat
      361 attgatgata gttcagcata ggttaatcct gttaatgatg ctattgctgc tgctagtaga
      421 aaagagatcc acattgcatt ccccgcgatt gcggccacat ctcctattag cacataaatt
      481 cctgctccta aaataagccc tatcccatac atgatggctt gaaaaagagt aacacttcgt
      541 tttagtcctg gactggtatc agttgcatgc ataaacgacc ttgcattact tgctatctaa
      601 actattagtt caattaaata gaagagtgct ggtatttttt actgattttt tacaacacag
      661 aattgtttaa aacaagtccg ataatcttgt attatggaat attcagttgg aaattttgta
      721 tacggtgcta tagacggtgc agtaacaaca ttcgctatcg taactggagt agtgggagcg
      781 tctctttctc catcaattat aataatactg ggatttgcta atttgttagc agatggtttt
      841 tcgatggccg ttggaaatta tttggcagta aaaacacaga atgaatttat tcagaaagaa
      901 agaaagagag aagaatggga aattgataac cgcatagaag aagaaaaaca agaaattcga
      961 gagatttata gcaataaggg gttcaaagat gaacttttgg atgaaattgt cagaataatt
     1021 acttcgaggc gaaaggtgtg ggttgacaca atgatgagag aagaacttgg attaattgaa
     1081 ggaaaacaca gtccgattgt aggagctggt aatacttttg taggtttcaa cgcaataggt
     1141 ataatccctt taatcccatt cattgctgtt tacttatcag gctcaagcat atccattagt
     1201 aacgctttaa tttattcagt tttggctacc gcaagctctt tcttcttgat aggaagtata
     1261 agaggtaagg ttgtgcacaa gccaatgttg atttcaggac tcaatactct cctgataggt
     1321 ggaattgctg ccgtggtatc ctattttgtt ggatacaccc taagtgtggt aattggctaa
     1381 tggaactttg taaatcactc ccttacaagg gtatcgggtt tgatttcact caattaagag
     1441 aatatccacc aaactatcat aagaaataat tataatggat agttaaaata agtactttat
     1501 gaagcacaaa agaacatcct ccgtacttgt tgccattgat gggtctaaat atgcagagaa
     1561 agcatttgta tatgcatgcg aattatctag catgaaaaac agtcctctaa taatcataaa
     1621 tgttgttgag gaatatacca ctacgggata ttcagtcttg aaagaattga aaatgtcgag
     1681 caataagatg ttgcgcgaat ataagtcaag agctcaatcc ataggcattc aaaaaccaat
     1741 tacaattcat tctgtgggta acgcagttga ggaaatattg aaaattgcca acaggaaata
     1801 tgtggataca ctggttattg gaagtagagg aaaatatggg acgtcagagg acatgttagg
     1861 cggtacatcg tataagctta ttcattattc gaagtgtaca gtaacgattg taaggtagtc
     1921 aataggatct gagaatgttg actaacatct aattagagcc atggtaatgt attaatattt
     1981 aaaactcacc taatttgccc gatacagtcc agatcatttg atcaaataaa tatacttaag
     2041 gtagcgtctt gtattctagt atatggttgt aagtgtaaga gacataatga ggaaagacct
     2101 acacacaata ggagaatcag cttccattca agacaccgca aagttaatga atgatttcaa
     2161 agtgagttcg ttactagtag tagatataca tggtaaccca attggtcttg taaccgaacg
     2221 agacttggtg aggagggca
//
LOCUS       DASPFX010000205         6029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_7006, whole genome shotgun sequence.
ACCESSION   DASPFX010000205 DASPFX010000000
VERSION     DASPFX010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6029
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7006"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            818..1390
                     /locus_tag="VD694_04405"
     CDS             818..1390
                     /locus_tag="VD694_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11981.1"
                     /translation="MLPADLIEGDKKQKKTTTITFRVESNVMNKIYSKAEQEDNALNT
                     LVNQILKRYVEWDMYEGKAGMIPVNKLVLKKLFQGLSEEEVVNMSQDLAKNAVYDIAL
                     FMKGKSKLDTDSFVSWFLSRMKNCSEIMENKENGTNTYIIKHDIGMNWSLYHKTVLES
                     IFMENLQKPVQTSMTDSTLTFTFENNETFG"
     gene            1551..2273
                     /locus_tag="VD694_04410"
     CDS             1551..2273
                     /locus_tag="VD694_04410"
                     /inference="COORDINATES: protein motif:HMM:NF017959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HXW11982.1"
                     /translation="MTFEGKGKPTEQPAHKIKQSKNIQRIKYLAIGGIISPILLVIVT
                     MVPTLLDPSYSPISMTISESQAIGAPHKPLVDAIMVVYDVSFIPVAIALHKGIRATGK
                     LWEKIAPAALILVGVISVPLTLLFPLDIEALSGNISTPGSILHFNLAAVVASLMMLTP
                     IAFWFRMRKDKRWYNYRTYSLASFAAVLILGILTFALAGHEGSASDGDYRGLLQRLTI
                     GSVLQWQLVMAIGLIRLPKCTA"
     gene            complement(3223..3603)
                     /locus_tag="VD694_04415"
     CDS             complement(3223..3603)
                     /locus_tag="VD694_04415"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW11983.1"
                     /translation="MSDAKIRGVMIVENNDDINLTFKLVLSKSDSRLRIYSFNDCFEA
                     LQEFRPNFYDLIIIDIMMPKISGFRFYDIVRRLDGRLKICILTTTHKDVIKKAYPEAE
                     RFSLLKIPVTNEELVKTTKEILEL"
     gene            3730..4344
                     /locus_tag="VD694_04420"
     CDS             3730..4344
                     /locus_tag="VD694_04420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11984.1"
                     /translation="MAQDVKRTVYLILLLIPILSAVTKHQTGEFIYLGSYITTFKNRR
                     KLNGENFHFKKKFRTLTFRLDEDVVNRLEDEASIRQISLNALTNQVLLRFIEWGRYEQ
                     KTKMVPVSMSILNELLGRITREEIENIAKTVGKNTAEEITLFVKKSMNVESFVSWYLE
                     RMKSCSVIAEDSDNETQMYIISHELGYNLSFLHKTILDLYFLND"
     gene            complement(5226..5552)
                     /locus_tag="VD694_04425"
     CDS             complement(5226..5552)
                     /locus_tag="VD694_04425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11985.1"
                     /translation="MIKEEDAPSGHLHPPDLRAVLVEQILQSCISQSSFSELTSIIQE
                     MHPAISSNSLREYLFYLIESYFINYHGNSGAFVLTGAGLGLLYMIKKEKRISKESINK
                     IIINIE"
BASE COUNT         1946 a         1101 c         1103 g         1879 t
ORIGIN      
        1 gaagcaagta tttgcagcgt aatgcaatta atcaaccgtt aagcatacct caaggattca
       61 ggagtggata gattcctata atggcattag tatcctcttt aactatgaac cagaaaaacc
      121 tataattgac acttttacgg agcttaattt cagcattcaa aatacaacta caggaaatca
      181 tatttctgat gctaataatg ctaaagcagg agtagttaca aatggtcaga ggttattcaa
      241 gtttgaataa ctgttgggga taacgggtca cttttctgta aaatatttat ttccagacga
      301 tggaacccaa gaatagatac taacgattcc agtaccgcat cgtcatttaa tgtattttta
      361 ccacaccagg taccacttag tatattaaat ccatttcctt ccaagcggta ttactgcttt
      421 gttaatcgga gtgataagtg caatagcagc agcaaccatc attctattga aaagaaagta
      481 gaatcagctt tcaacacaaa atctgttgag gtacatgaag gcagaatacc ttagtatatg
      541 gagatggtgg aggtttgtgc cccttctctt agtgtatggt ctgatagcaa tttttcttat
      601 ttcaactcaa aatctcaaaa ttatagaatt tgttcatcga gtgaatttgt aagaatacat
      661 agcaaaccaa gaggaatatt ctatcgccac agaaaatatt gcgaaagaac aagcaaacag
      721 cagataacta atgtttttct cttagtttca cacacatgag tgcagtatca tgcagtgtat
      781 tcctacagcg taaataacgt gtttataaga atgaaccatg ttacctgctg atttaataga
      841 aggggataaa aagcaaaaaa agactacaac aataactttc cgcgtagaaa gtaatgtcat
      901 gaacaaaatt tactccaaag ctgaacaaga agataatgcc ttgaatactc ttgtcaatca
      961 aattctaaaa agatatgtag aatgggatat gtatgaaggc aaagctggaa tgatcccagt
     1021 caataaattg gtgttgaaga aattatttca aggattaagt gaagaagaag tcgttaatat
     1081 gtctcaggat ttggccaaaa atgcagttta tgatattgca ttatttatga aaggtaaaag
     1141 taaactagat acagattcgt ttgtttcctg gtttttgtca aggatgaaga actgcagtga
     1201 gataatggag aataaagaaa acggtactaa cacctacatt ataaagcacg acattggaat
     1261 gaattggtca ttatatcata agacagtatt ggagtcaatt tttatggaga atttacaaaa
     1321 acctgtgcaa accagtatga ctgattcaac gctcactttc acatttgaaa ataatgaaac
     1381 atttggataa ttctctctct ataatttaga ggtttacgta ttgttgttgc tttattgtga
     1441 tctccttcat gtacctctta tttagtagca cgcaaaacac taggccaaat ggatgaagtg
     1501 cattgcacta aaatcacagt gctaaaatat cacaagcacg aaatatggcc atgacgttcg
     1561 aaggaaaggg taaacctacc gagcaaccag cacataaaat caaacaatca aagaatattc
     1621 agaggataaa gtatctcgct attggaggta tcatttcacc aattctttta gttattgtta
     1681 cgatggtgcc aacattgtta gacccatcat actctcccat atccatgact atcagtgagt
     1741 cgcaggcaat aggagctccg cacaaaccat tagtggatgc tattatggtt gtttatgatg
     1801 ttagtttcat tccagttgcc atagctttac ataaaggaat aagggcgaca ggtaagctat
     1861 gggaaaagat tgcgccagct gcgttgatat tagtgggagt catctctgtg ccgctaacct
     1921 tgttgttccc attggatatt gaggctttgt caggcaacat ctcaacaccc gggtcaatcc
     1981 ttcactttaa ccttgctgca gtagtcgcat ccttgatgat gcttactcct attgctttct
     2041 ggttcaggat gaggaaagac aaacgatggt ataattaccg tacgtactca cttgcatctt
     2101 ttgcagcggt cttaatcttg ggaatcctca catttgccct agccggccat gaaggttcgg
     2161 ccagcgacgg tgactacagg gggctactcc agcggctgac aataggaagt gtattgcaat
     2221 ggcagctcgt tatggcaatc gggctgatac gtttgccaaa atgtactgct taacaagaac
     2281 caaaatgctt tctttctata ggttatagta gcagcaatca taatatttgg cctttcaaag
     2341 caagttttcc atcttttgaa aaacaagtta tctgtcatga cacacagccc atattttgaa
     2401 ttcacgctcc atccctaagt ccaaccactc ggaatttgta ttgttcaccg tatatatcat
     2461 gaaaaaagcg agcataacct cttgcgaaat cataagtggc aaatgttata ataacattca
     2521 atttgaattt cgtattccgt atataggggg agtgattaaa cttcgtaatt atgtctttca
     2581 tttgacttat ctaattcatt gataggccta attgtgtagc ttcatgccgc aggaagatcc
     2641 tagattcaac gacaacactg gttcttgtgg ttttcattag ttgaatctcc tgcagtttct
     2701 agatctagac aacagtgata ttaggtcaat aggaatgaat tccttattat gttggattag
     2761 ttttatgcgt ccgtcctcta ttatttgacc atatttcttc attttgtttt atcgccgcct
     2821 gccacttcag tataaggtgg tgctcaaaat tatttatcgg atcaagaaat agttatgaat
     2881 agttaagccc tctttttcct aatacagaat tagctgcgaa aagttcaagg tttgagtttc
     2941 ttgcatgcag cattattttg tttctgtatt ttctttcacg agggtatatc cttaattttg
     3001 tgctacagca gggacaccac attccatccc atcttatata aatctgacat atctgacaac
     3061 gcttctgtcc atccagataa cgacttaacc tgttcactgg ctttcgagct aaatgacgag
     3121 tgcaggtacc tttacatgtc atatttttaa aagggtaagt tgcaggaatg caattagcat
     3181 gttatgtaaa ttttacagct atatttcttg tccgaacgag tcctacaatt ctaatatctc
     3241 ttttgttgtc tttaccaatt cttcgtttgt aacaggtatt ttgagtaaac taaacctctc
     3301 agcttcaggg tatgcctttt ttataacatc tttatgtgtg gttgtcagaa tacaaatttt
     3361 gagtctgcca tctaatcttc ttactatatc ataaaaccta aaaccactta tctttggcat
     3421 cataatatca atgataatta gatcataaaa attaggtcga aattcttgca gtgcttcaaa
     3481 gcagtcattg aaggaatata tccttagtct actgtcagac ttacttaaaa ctaacttgaa
     3541 ggttaagtta atatcatcgt tattttcaac tatcataact cctctaattt tagcatcgga
     3601 catttttcga tctctcatac ctgaaaccaa gatgtcaaaa actcagaagt atataaatgg
     3661 agagcaatta gttacagccg cttacaagta aaatttttag gacaccatac cagaataatc
     3721 ggtaatacga tggcgcaaga cgttaaacgt accgtatatc ttattctatt actaattcct
     3781 attctttccg ctgttactaa acatcagact ggtgaattca tataccttgg ctcgtatatc
     3841 actacattta agaatagaag aaaactaaat ggagagaatt ttcacttcaa gaagaagttt
     3901 agaacattga catttaggtt ggatgaagat gtggtcaatc gattagaaga cgaggcaagt
     3961 attagacaga tttcgcttaa tgctctaacc aaccaggtat tgctcaggtt tatcgaatgg
     4021 ggtagatatg aacaaaagac aaaaatggtt ccggtttcta tgtccatact taatgaatta
     4081 ctaggtagaa ttactagaga agaaatagaa aatatcgcta aaacagttgg taaaaatacc
     4141 gcagaggaaa taactctgtt tgtcaaaaaa agtatgaatg tagaatcgtt tgtatcctgg
     4201 tatttggagc gcatgaaaag ttgttctgta attgcagaag atagtgataa cgaaactcaa
     4261 atgtatatta taagccacga acttggctat aatttgtctt ttcttcataa gacgatctta
     4321 gatctgtatt ttctcaacga ctaaacgttc ctttagagac gcatatttca aatggcacaa
     4381 tagctttcaa attcagaaga actgattata gggcctaatg aaaaacagat gagcttcatt
     4441 cagaatgagc ataagctagg atagctaatg gtaagtggaa gaatatctcc agaaccacac
     4501 tacatctcac catatatcct ctcggaatgc gtctcgattc aaaagctata ttcttgtgta
     4561 catgaaaagc tctgaatgaa aacaactgaa tcatgctctg cctttagtgt tttcaattgt
     4621 ttaaccatct tgttgtgtcc atgcccttgt acatatgctc aagctccctc attaagatat
     4681 caaaaactgt atttcttgtg gacatagaac agagtttaca tctgtaaaat gtggttattg
     4741 ttatagttgt cattagaaga gagaacaagc tgaggccgtt gagttaagag ataaacttaa
     4801 gggtttctat gtttcattat caaaagctag caacaaggat agcgaaaagc agaatattca
     4861 gccggacaca acaaaggact tagaccaacg gttggaaaga tggggaacat taaatgtatt
     4921 aggtcaaccg gccgaaccaa tatgcaccta ctatagatgc catcacaagt tttcacttca
     4981 tggttcaagg agatgtagtg taaacatcca ataaacaaga cattaggaat acaaataagg
     5041 tgtctctgaa aggacatgcc acgtttttgt agaatctgtg aataggtcga gatagtgctc
     5101 aaggatctgt tttgatatcg aagaggggtt aaatgctctc accggttaat atagtacgag
     5161 ttgtatgtat tttacatttt ttagccatga aagattccct tgtataagtc tgtcttcaca
     5221 accaattatt ctatattgat tatgattttg ttgatacttt cctttgagat ccttttctct
     5281 ttctttatca tgtataataa ccctaaccct gcgcctgtta gaacaaaggc tccactattt
     5341 ccatgatagt ttataaagta agattcgatt aggtagaaca gatactccct taagctatta
     5401 gacgatatag cagggtgcat ctcttgtata atagacgtaa gttcactaaa tgaagattga
     5461 gagatacatg attgtaaaat ctgctcaact agtactgccc gcaaatcggg cggatgaagg
     5521 tgaccgcttg gagcatcttc ttctttgatc atttccgctc ttatccacct atagggatta
     5581 atttaccaag tagcatggag gacaacttgc ctggttacat aataacacta ggaatacaca
     5641 gcgctgcagt gcacttgaag gatggtgtta tctatattta tcccgactta gtctgtgtat
     5701 cctagaatgc gacataaagg actagacaac catcaaaata ttctacaagt caatgcgtta
     5761 gtttagtgac aattattagt cgcttatatc caatcactct atcatatcta tgagcacgct
     5821 gtacatcaaa ttcttcaagt aatagtgagc atttcaaaat aaaacaagtt actcaacagg
     5881 gttagttcca ctcataataa tacacagtcg cattaccatt cgtgtctatt tgagatttat
     5941 acactgctac catattactc aaggacgcaa gttcaccttt ggcatcttca ttgaagatac
     6001 cgattccacc cccagaataa gtcaagtca
//
LOCUS       DASPFX010000206         4852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1369236, whole genome shotgun sequence.
ACCESSION   DASPFX010000206 DASPFX010000000
VERSION     DASPFX010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1369236"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..2298
                     /locus_tag="VD694_04430"
     CDS             280..2298
                     /locus_tag="VD694_04430"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HXW11986.1"
                     /translation="MNKAQSISTFQVSKNFPFPQKRQRQDHILKEICDAFNSGYKQII
                     LEAPTGFGKSPLAVSFALTLGTSYICTSTKDLQSQYANDFSYLKVAKGKNNFPCSVKE
                     DFIREGKYRCMICLSPAGLRQSDSLKEVEDLVTSECKHTSVEYGPCMTDEAFRDNGCK
                     YRTFPKDYTVIKKGTKNESVFIPLVNIKNYRNNYSKWLHLKNFNTGDSPITDWRACPY
                     FDQLNIALSASHSIFNYSSFLALLPSKKNLLSRELLVLDEGHLLETELVKFRGLTISK
                     RRWKRYVSDLKIVDFGFDDIKRWIDFLIELETKMLNLLGNSSVAESLAIERKVKYGWS
                     TNKKKNSNKNTRIVSSSDLFESDEQISKQYEDLSVHVNNTLTDEVAADAIRDTERLTR
                     TINNIISDPENWIVSDVIKENYEVVKVEFKPLDISKYCKAVFDKCSKTIIMSATILNY
                     NTFCRNIGISLENDEVKFIQVPSDFPVENRPIYPMNVAYLNYNNLQLQETKSAITNAI
                     DNLMTIHNKHKGIIHTTSYEQLNFIKDNISKDNARRLIVTDPEIQREEVVQEHFYAKK
                     PTVLISPSLHTGLDLKEDLSRFQIITKVPYPNKSDRWINAKRNKVPEWYYWQTGLKLV
                     QAYGRSVRSKDDWARTYILDSAFQYFLRKNRDILPGWFLNAIKNYNLS"
     gene            2515..3183
                     /locus_tag="VD694_04435"
     CDS             2515..3183
                     /locus_tag="VD694_04435"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HXW11987.1"
                     /translation="MAATTATTAAASTIGKIPKWKVIGDWFDVCKCSMPCPCEFAQTP
                     TYRDCEGILAYNIKKGNYGETSLDDLNVILMTSFEGNIWAGDGKTKVDLALFIDQKAD
                     EKQREALNMIFSGKAGEFMAEFSKLVGEVRGIEYAPIKFELADDLSYWSVEIPGRVFA
                     KAEALTGPTTPPGKRVQTINPPGSEVGPGGVATWGVSLADEADTRGFKWKRKSRSSKH
                     IPFE"
     gene            3254..4357
                     /locus_tag="VD694_04440"
     CDS             3254..4357
                     /locus_tag="VD694_04440"
                     /inference="COORDINATES: protein motif:HMM:NF021465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HXW11988.1"
                     /translation="MKTTSLIIITVVVSIAVFAWFVSIWQYDTMMSAMMTVYYNPVAL
                     SLFVVIWTAGMAAMMFPAIIPMVLFYNRLIDSSSKGSKGNLHSHDSSQMLYHRQGNTN
                     SDTGNNSNSKNHNSIPGSANQDQNKRRKIYNLSYVFRLKTYYMVIFILSYLAIWAIIG
                     IALLIGWSYALDILLTQLGINDILNSQQQQQKEQLSINTIYGILLIISGIYQFSPLKA
                     RCLGYCESPLSFFMRRWRKGAAGAVTMGTYHGLYCLGCCWPYFLLMVALGWMNILWMG
                     LFAAIIFAEKIWVKGGLWIARITGIFFISIGILSLAGMISLASDPMSNTSNGGGMRSM
                     DNSMNMYMSSSLPNNVMPHNDTDETSSIMNMKM"
     gene            complement(4481..>4852)
                     /locus_tag="VD694_04445"
     CDS             complement(4481..>4852)
                     /locus_tag="VD694_04445"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HXW11989.1"
                     /translation="ISMRCANGYQHPAGSDYQIGHETGINENYYSNERNKNGRCTISS
                     DAVTIVMIIDTGGGIDLEIMPRLFTRFATNFKTGTRLGLFISKSIIEAHKGKIWAYNN
                     KEGRGATFQFSIPLKTQKKYR"
BASE COUNT         1654 a          829 c          926 g         1443 t
ORIGIN      
        1 ataatcagtt ttgcagtgca gtatcagcag acatttagtt actttcattc agaactgata
       61 ctatccaatt catagtttcc atcagagtaa atagaataac aataaaaatc aataaattta
      121 cttacaattc ctatacaata gtcattgtca actattaatt aggcagaatt ataagaatgt
      181 agttagacct gttagttaca gtgaaggctg tgaaacatga atataaagat aaattaacct
      241 aacgtaatga tatgatgata caatcatcgg ggttctaata tgaataaagc acaatcaata
      301 agcacattcc aagtgtctaa gaatttcccc ttcccacaaa aaagacaaag acaagatcac
      361 attctcaagg aaatctgtga tgcttttaat tcaggttata aacaaataat tcttgaagca
      421 ccaactggat ttggaaaaag ccctctagct gtttctttcg cactcacttt gggaacaagc
      481 tatatatgta cttcaacaaa ggatttgcaa agccagtatg ctaatgattt ttcataccta
      541 aaggtagcca agggcaaaaa taacttccct tgttcggtaa aggaagactt cataagggag
      601 ggtaaatata gatgtatgat ctgcctttca cccgcaggac tacgtcaaag tgactcgctc
      661 aaagaagtag aagatctggt tactagcgaa tgcaaacaca ctagtgtcga gtacggacct
      721 tgtatgactg atgaagcttt tagagataat ggttgcaaat acagaacttt tccgaaggat
      781 tatactgtga tcaagaaagg cacaaaaaac gaatcagtat tcattcccct agtaaacatt
      841 aagaattata gaaataatta ttcgaaatgg cttcacctaa aaaactttaa cacaggagat
      901 tctccaatta cagactggcg agcatgtcca tattttgatc aattaaacat tgctttaagt
      961 gctagccatt ccatattcaa ctattctagc tttttggcac tgcttccaag caagaaaaat
     1021 ctactttcga gagaattact cgtactagat gaaggacacc tattagaaac agaacttgta
     1081 aagtttagag gactgacaat ttcaaagagg agatggaaga gatatgtttc cgatctaaaa
     1141 atcgttgact tcggttttga tgatatcaaa agatggattg attttttgat agagcttgaa
     1201 acaaagatgc tcaatctact cggtaatagc tcagtggccg aatccttggc cattgaacgc
     1261 aaagtcaagt atgggtggtc tacaaacaag aaaaagaatt caaacaagaa tactagaata
     1321 gtatcttcat cggatttatt tgaaagtgat gaacaaattt ctaaacaata tgaagatctt
     1381 tctgttcatg taaataatac attaacggat gaggttgctg ctgatgccat tagagatacc
     1441 gagagactaa cacgtacaat aaacaatatc atatcagatc cagaaaattg gatagtatca
     1501 gacgtaataa aggagaacta tgaagtggta aaagttgaat tcaaaccatt agatatttca
     1561 aaatactgta aagctgtatt tgacaagtgc tcaaagacaa tcattatgag tgctacaata
     1621 ctaaattaca ataccttttg cagaaatatt ggaatctccc ttgaaaatga tgaagtaaaa
     1681 ttcatacagg ttccatcaga ctttccagta gaaaatagac ctatatatcc tatgaatgtg
     1741 gcgtatctca actacaacaa tctgcagtta caagaaacca aatcagctat tacaaatgca
     1801 attgataatt tgatgacaat acacaataaa cataagggaa taattcacac tacctcctat
     1861 gagcaactta attttatcaa agataatatt tccaaggata atgctagaag actcattgta
     1921 actgatccag aaatacagag agaagaagtc gttcaagaac acttttatgc caaaaaacct
     1981 acggtcctta tttccccgtc attacacact ggactggacc taaaagagga tctatcgaga
     2041 tttcaaataa taaccaaagt tccctatcct aataaaagtg atagatggat aaacgcgaaa
     2101 aggaataaag ttcctgaatg gtattattgg cagacaggtt taaaacttgt ccaggcctat
     2161 ggtagatctg ttaggtctaa agacgattgg gcaaggacat acattttaga ttcagcattt
     2221 cagtattttt taagaaagaa tagagatatc ttgcccggtt ggtttctcaa tgcaatcaaa
     2281 aattataatc tgtcataatt tcacttcaaa gctggaaatt cttatgaaac atgttcttct
     2341 aaaatcatca cctaattgct agttatttag gaaggagaag gattgaacat ttggacgatt
     2401 caatacgcaa gagacaagat tggatgattt aatgagaagc tcatccaatt aattaattcg
     2461 gcataccaaa tatttaacgc taaaatagca cttgaactat tgagtaaata ggatatggca
     2521 gcgacaacag ctactactgc agcagcctct actataggca aaattccaaa gtggaaagtt
     2581 ataggtgatt ggtttgatgt ttgtaagtgc agcatgccat gtccttgtga gtttgcccaa
     2641 acaccaacat atcgcgactg cgagggcatt ttagcgtata atatcaaaaa aggcaattat
     2701 ggtgaaacat cccttgatga cttgaatgta atacttatga caagcttcga aggtaatatc
     2761 tgggcaggcg atggcaaaac aaaagtggat cttgcacttt ttattgacca gaaggcagat
     2821 gaaaagcaaa gagaggcact gaacatgatt tttagtggaa aggctggtga gttcatggct
     2881 gagttttcaa agcttgttgg agaggttcgg gggattgaat atgctcctat taagtttgag
     2941 ttggcagatg atttatccta ttggagtgta gagataccag gaagagtttt tgcaaaagct
     3001 gaagcattga ctggccctac gacccctcct ggtaaacgcg ttcaaactat taatcccccc
     3061 ggcagtgagg taggacctgg aggggttgca acttggggag tatctcttgc tgacgaagcc
     3121 gatacaagag gcttcaaatg gaaaagaaaa agtagatcaa gtaagcatat tccatttgaa
     3181 tagagcggac catgaaatct acaactaaca ataaaagaat tgaatactca acttactacc
     3241 caatattagc attatgaaaa ctacttctct aataataatc actgttgtag tgtcaatagc
     3301 tgtatttgct tggtttgtat caatttggca gtatgatact atgatgtctg ctatgatgac
     3361 agtttactat aatcccgtag cactatcttt atttgtagta atttggactg caggtatggc
     3421 agctatgatg ttcccagcta taataccaat ggttcttttc tacaatagac tcattgatag
     3481 tagtagtaag ggcagcaaag gtaatcttca ttctcatgat agtagtcaga tgttatatca
     3541 tagacagggt aataccaaca gcgatacggg taacaatagt aatagtaaga atcacaatag
     3601 cataccaggt tcggcaaatc aagatcaaaa taaacgtaga aagatctata atctaagcta
     3661 tgtgttcagg ctcaagactt actatatggt aattttcata ctttcatatc ttgcaatctg
     3721 ggccataatt gggatagccc tgcttattgg atggtcttat gccctagaca tattattaac
     3781 gcaactggga ataaatgata ttctaaattc acagcagcaa cagcaaaagg agcagttatc
     3841 gataaatact atatacggaa tcctattgat catatctggg atctatcaat ttagcccgct
     3901 gaaggccaga tgtcttgggt attgtgaatc tcctcttagt ttctttatga gaagatggcg
     3961 aaaaggggcg gctggagcag tgacgatggg aacatatcat ggcctatatt gtctgggatg
     4021 ttgctggccc tactttttac ttatggtggc attagggtgg atgaatattt tgtggatggg
     4081 cctgtttgcc gccatcatct ttgctgaaaa gatttgggtt aaaggtgggc tctggatagc
     4141 tagaatcact ggtatcttct tcatatcgat tggaattctt tctttggcag ggatgatatc
     4201 gcttgcttct gatcctatga gtaatactag taatggtggt ggcatgaggt cgatggacaa
     4261 ttcaatgaat atgtatatgt cttcctcact accaaataat gtgatgcctc ataacgatac
     4321 tgatgaaact agttcaatta tgaatatgaa aatgtgaata cgaataatgg ttgttacgag
     4381 caccctcttg gttcaaaatg ccagagaagc cgaaaattct atactgtatt aaagttcatg
     4441 aaattctcaa aaacattatt agaagtcaga ttcacggatt ttagcgatat tttttttgag
     4501 tttttaaagg aattgaaaat tgaaaggttg cacctcgtcc ttctttatta ttataagccc
     4561 atatcttgcc tttatgtgct tctatgatac tctttgagat aaacaatcct aatcttgtac
     4621 ctgtcttgaa attagtagca aatcttgtaa ataatcttgg cattatttcc aaatctattc
     4681 ctcctccagt atctataatc ataacaatag tcactgcatc agatgatata gtacagcgac
     4741 catttttgtt gcgctcatta ctatagtaat tttcattaat gccagtttca tggccaatct
     4801 gataatcaga acctgcagga tgttggtagc catttgcaca tctcatagat at
//
LOCUS       DASPFX010000207         2681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1471430, whole genome shotgun sequence.
ACCESSION   DASPFX010000207 DASPFX010000000
VERSION     DASPFX010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1471430"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VD694_04450"
     CDS             <1..201
                     /locus_tag="VD694_04450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11990.1"
                     /translation="SDNITQLHTTDLNRGPISPAVSAGAATAEDATGPSTVTPTTSDG
                     AEEDADGDEGEDEEEPDEDEDE"
     gene            complement(571..711)
                     /locus_tag="VD694_04455"
     CDS             complement(571..711)
                     /locus_tag="VD694_04455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11991.1"
                     /translation="MLISDSSLTQEPNQEESETDTAESGEDENEGESEGEQTIPSVPL
                     FG"
     gene            complement(1001..1705)
                     /locus_tag="VD694_04460"
     CDS             complement(1001..1705)
                     /locus_tag="VD694_04460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11992.1"
                     /translation="MAVFGVSVSIAIIAAGGGFLRSGPSLFDPPDASDLFTVGNNIRD
                     GTTLNYSVTRVGGHGSLWNGLGGHGSLVNSSVSIEFTQDSNNENNWQATIGIVNGTER
                     SSGKSGQDMILLSKEQLTNADPVNSSFKPYYELLESSILEIRDIAEGPKYMIEGAQWN
                     SISGEVTTVPVRIAAQEIIRIDDLTFDAYVLSYTLGSKTSKIWISKDIPLPIKAEVYD
                     ADNQLQYEYELDSYEK"
     gene            complement(1856..>2681)
                     /locus_tag="VD694_04465"
     CDS             complement(1856..>2681)
                     /locus_tag="VD694_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HXW11993.1"
                     /translation="GNTYKSALSTAKDCNSIGISAILNFLGEDATNTTVIEKTVQEYL
                     LLLSQLESNKIIGCISVKPTQVGLRIGYDKCLYNFKQIARRTKSLDRFMWIDIESIQF
                     VEDTISIYLELLREYKLSTGVAIQSYLKRSSSDLLHLVEQGASVRLVKGAYREDESIA
                     FQSMGKINSNFSKLMKILFEYGNSNDGIFAIATHDPKLIDEAILLSRTSGIDNRKFEF
                     QFLMGINSELKENLVKRGFRVSEYIPYGSHWFPYSMRRIRERRRNILLLARSLFQS"
BASE COUNT          772 a          569 c          481 g          859 t
ORIGIN      
        1 agtgataaca ttactcaact tcatacgact gatttgaata gaggcccgat aagccctgcc
       61 gtatcagcag gggctgctac ggcggaagac gcaactggtc cctcgacagt tactccgacc
      121 acttctgatg gagctgaaga ggacgctgac ggagatgaag gcgaggatga agaagaacct
      181 gatgaggatg aagatgaatg aataagagaa ttgtggaaat gctctgtgga gtcacaatat
      241 acattattga tagaggattg ctgcaagttt catctttcta gctcactccg gtacaacata
      301 ccgacaataa tagagtagaa gaggttctac atccaaaaaa accctgtact tgcgacctca
      361 attcgtaacc atgttttgac aataatcaaa ctggtagcgt caatttgcag gtagcgcaat
      421 ggtgtggcct tctgcataga caggcaagaa tttagaaatt tttgtttaag gcagggcaat
      481 tcctaacctt gtcttcttgg gaatctgacg ccagttttgt cacattcgac atctacagtt
      541 attataccga gtagtatttg gttacgcgga ttaaccgaat aacggaacac tgggtattgt
      601 ttgttctcct tcactttccc cttcattttc atcttcgcct gattctgcag tatcagtttc
      661 gctttcttct tgatttggtt cctgagtgag gcttgaatcc gatattaaca atacttttga
      721 tatcatatga taacgggtta aatgaaatag ttattaaata aaccttgtca gtccgttatc
      781 tgttgctatc taaaaaaaga taatttttct gttttagcat ttgatggaat tggcagatat
      841 cgttagaact cttatcatct atgcattgca aatcatcgtt aagaggagaa tgtatttgcc
      901 aaaatattca tgtatctttc cgaaaattag aaacagttat tctttaatga agtatcatcc
      961 aacccatcgc tgcctcggtt ctgattcaca gcccaaatta ttatttctca taagagtcta
     1021 actcatattc atattgaagc tgattgtcgg catcatatac ttcagctttg ataggtaagg
     1081 ggatgtcctt ggatatccaa atcttactag ttttggagcc caaggtataa cttagtacat
     1141 aagcatcaaa ggtcagatca tcgatgcgta ttatttcttg agcagctatt cttaccggaa
     1201 ctgttgttac ctcgcctgaa attgaattcc attgtgctcc ttcgatcata tatttaggcc
     1261 cttctgcaat atctcttatc tcaagtatcg atgactccaa gagctcataa taaggcttaa
     1321 agctcgaatt gactggatct gcattagtca attgttcttt tgataacaaa atcatatctt
     1381 gcccgctttt accgcttgat cgctccgttc cgttgactat tccaatggtt gcttgccaat
     1441 tgttctcatt gttactgtct tgcgtaaatt cgatggatac cgaagaattt acaagcgaac
     1501 catgtccacc taatccattc caaagtgaac catgtcctcc aaccctagtt acagaataat
     1561 ttaatgtcgt cccgtcccta atattattac ccaccgtaaa caaatctgag gcatctggtg
     1621 gatcaaataa tgaaggacct gatcttaaaa aaccgccacc agcagctatt atggcaatgc
     1681 ttacgcttac tccaaatact gccataattc cagacagcag tagaactttg accctcggag
     1741 acgtatatta gatcaccatt agatgaccac gagtaaatct cgaaccatat ttattattac
     1801 ccgcaagacg gaggctatat tctataagat gacatgaata tatgttctat tttttctagg
     1861 actgaaaaag agatcttgcc aaaagcagaa tgtttcttct tctctctcta attctgcgca
     1921 tagagtacgg aaaccaatgg ctcccatatg ggatatattc agatactcta aatcctcttt
     1981 ttactaggtt ttccttcaat tcactattaa tgcccatcag gaattggaat tcgaattttc
     2041 tattatcgat gccggatgtt cttgacaaca aaattgcctc atcgataagt ttaggatcat
     2101 gggttgcaat tgcaaagatt ccgtcattac tatttccata ctcaaataga attttcatca
     2161 gtttcgagaa attggaatta atcttcccca tggactgaaa cgcgatgctt tcatcttccc
     2221 tgtacgctcc cttaacaagc ctaacactgg ctccttgctc cactagatgc aagaggtcgc
     2281 ttgagctcct cttaagatag gattgtattg caacccctgt actcagtttg tattctctta
     2341 gaagttcaag ataaattgat attgtgtcct cgacgaattg tattgactca atatcaatcc
     2401 acatgaatct atctaaactc ttagtccttc tagcgatctg tttaaaattg tacaaacatt
     2461 tgtcataacc aattcttaga cctacttgtg tgggcttcac agaaatgcat ccaatgatct
     2521 tgttactctc caattggctg agcagcaaga gatattcctg cactgtcttc tctattaccg
     2581 tagtattggt agcatcttca cctaaaaaat taagtatagc cgatattcct atactattac
     2641 aatctttggc tgtcgacaat gcacttttgt acgtgttgcc t
//
LOCUS       DASPFX010000208         2763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_7228, whole genome shotgun sequence.
ACCESSION   DASPFX010000208 DASPFX010000000
VERSION     DASPFX010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7228"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..319
                     /locus_tag="VD694_04470"
     CDS             <1..319
                     /locus_tag="VD694_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HXW11994.1"
                     /translation="SGKDPFTKPLISSEREPLTEVTTLDKDVRVVVEMPGVNKENIQI
                     KSYDNSVEVSATGPRKYHEVINLPKEADIETAKSVFNNGILEITFNKKKETKPKGKEI
                     KVE"
     gene            1049..1639
                     /locus_tag="VD694_04475"
     CDS             1049..1639
                     /locus_tag="VD694_04475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW11995.1"
                     /translation="MNTKERTIMNQECSSIVRMDKRIKFVGITDRNAKLLVGKSRDIL
                     SSNIIGEGVETNTNTIKSSSNMISSRVDNLFGVNFKNSNLRLFFSDYLLWTIRKCGVS
                     SDYGKNNTDLYIFKGVGENKELAYFQVSGFTRDSVKLAVTPLDLRMRKFICIYFEPAY
                     KIRNSVNGIDEMFEELLSKIKSNSNSSRLRIDRLRT"
     gene            complement(2309..>2763)
                     /locus_tag="VD694_04480"
     CDS             complement(2309..>2763)
                     /locus_tag="VD694_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="poly-beta-hydroxybutyrate polymerase"
                     /protein_id="HXW11996.1"
                     /translation="IEYSHKYFHFFEQPRSLESIAEFFATETWLYDSPPIIGEIYREF
                     IEGCYKQNLLIKNRMRIEDSNDNDNSDMLVNLKNINMSFLNIVAKKDDLVAPDSSKAL
                     NTALTESYDKKLIEHNSGHVGLMIGKNAHKELWPEVGDWLKKRSVGHS"
BASE COUNT          917 a          484 c          501 g          861 t
ORIGIN      
        1 tagtggcaag gaccctttta ccaagccatt gatctcatct gaaagagagc ctctgacaga
       61 agtgacaact ttagataaag atgtaagggt ggttgtggag atgccaggtg taaacaaaga
      121 gaacatacag ataaaatcct atgataattc ggtggaagta agtgctactg gccctaggaa
      181 atatcacgaa gttattaatt tacctaaaga agcggatatt gaaacagcta aatcagtgtt
      241 caataatgga atacttgaaa taacatttaa caagaaaaaa gaaaccaagc ccaaaggaaa
      301 ggaaataaaa gtagaataaa aatagagcag caaataaaca tattattttc gtcttcttgt
      361 atcatctata ggtactggag tattatccgc tattacggct attttcggca tatagctcat
      421 ctatgggggt tactaatagt cagtgttgga cgtatttttt tgcatttgag tatgatctgt
      481 cgatatgtac gttattatct gaaatgattt taattctatt ttagtgaatc aattcttatc
      541 agattagttt tccccatatc atatgaggaa cagtatttga ggagtgacgt agatgattgt
      601 gtctttcatg gaatatcagt agataatgcg tggcgtttat ctacagtaaa tctgcagtaa
      661 agcaaagcac actcctagac atgtcttaga gaaaagaaag attaactttc ggctcttctt
      721 gacaaaccta ggctattgat gcatccgagc attctgaaga acatgaaaag tagtggacga
      781 agatcaaata ttcacattaa cgagtatgaa aatgaggatt aagaatccaa ttagtcttgg
      841 taaaccacga tcgggttttt tacacacata attaatttta taaacatttt tttcaaaagt
      901 atggaacaat cgtaatacag gatttgctat gaataaatac tgagcgtgaa tttctgcatc
      961 actcgcttcc tctacatact tcaatgcaat gcattgcaaa gtaaacgtac ttcaaatata
     1021 gcctctctaa ttctaaaaac acgaagtaat gaatacaaaa gaacgtacaa tcatgaatca
     1081 agaatgctca tcgatagtta ggatggacaa gcgcatcaag tttgtaggta ttacagaccg
     1141 aaacgcgaaa ttactagtag gaaagagtag agacatccta tcaagcaata taattggtga
     1201 aggtgtagag accaatacta acaccattaa gagctccagt aatatgatca gttcaagagt
     1261 cgacaatttg tttggggtca acttcaagaa tagtaacttg cgtctcttct tttcggatta
     1321 tctcttgtgg acgatcagaa agtgtggtgt cagttcagat tatggcaaga acaatactga
     1381 cttgtatatc tttaaaggag tcggcgaaaa taaagaacta gcctactttc aggtatcagg
     1441 atttaccaga gacagcgtca aattggcagt cactcctcta gaccttcgca tgcgcaaatt
     1501 catttgtatt tattttgagc cggcatataa aatcagaaat tctgttaacg gtatagacga
     1561 aatgtttgag gaattgctta gcaaaatcaa atccaatagc aattccagcc gcttacgaat
     1621 agatcgttta cgtacttgaa ttagtttatc tgaatgagct cttggatcct caaccccaaa
     1681 gatatttgaa taagtatcgg cagggatagt tacaatttcc tataaagatg taaaatacta
     1741 ccgcaatcac atagtatgcc ttaaggaagc cataaaagag accacctgca tttgaacaat
     1801 tcatctgact aagtacaaat atctgtctat ctaatctggc gtggagaaaa acgacagaat
     1861 cctttggcaa tagaatggga tgtaataata attgagatgt ctttcctagc ggggataatc
     1921 tacttttgtg aattgcaatg cattatactg caatgcagga aactataatg ttcttaaccc
     1981 cctgatgttc tccgaataag acttgtcctg aacaccatta tctactatgt agtttccgta
     2041 gtttaaaaga tcaagcaagg aatcatcaaa ttcgaatccg caggtagagc gtaatattat
     2101 ctattacaaa tatttctcac tcttcaaggt ggtgagtttt tcatagattg atatttctcc
     2161 cgtctgacta cacaagcctt taatcttaaa ccctatttgc tgtaattgtt gaatacactt
     2221 gtatctattc agatagtact ggttagtaat tattgttttt tgttcatttt aggccgcatt
     2281 aattaaagat tcaaggtagt aaactagtct aggaatgacc caccgatctc tttttcaacc
     2341 agtctcctac ttcaggccag agttctttgt gggcattctt acctatcata aggccaacat
     2401 gtcctgaatt atgttcaatg agtttcttgt catagctttc tgtcaatgct gtgtttagag
     2461 ccttactaga gtcgggggct actaaatcat ccttcttagc aacaatatta aggaatgaca
     2521 tattgatatt cttcaaatta accaacatat cagagttatc gttatcatta ctatcttcta
     2581 ttctcattct attcttgata agcaaatttt gtttataaca tccttctatg aattctctat
     2641 atatctcacc tattatcgga gggctatcat ataaccatgt ctccgtcgca aagaattctg
     2701 ctatcgactc taggctacga ggttgttcaa aaaaatgaaa atacttatga ctgtattcaa
     2761 tag
//
LOCUS       DASPFX010000209         8472 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1761880, whole genome shotgun sequence.
ACCESSION   DASPFX010000209 DASPFX010000000
VERSION     DASPFX010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8472
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1761880"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /locus_tag="VD694_04485"
     CDS             complement(<1..742)
                     /locus_tag="VD694_04485"
                     /inference="COORDINATES: protein motif:HMM:NF015089.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HXW11997.1"
                     /translation="MISGWLFDAYPLNGNMIFWIKKANSATTIRVEDKRWNHKIYIAS
                     DMFLLKSLIENNEILSMIKEYNFVSRYELITDIKKSQVLELELKDSTYSLKLAKKIER
                     MGRFGQFRLYNVDILPEQSYFYEHDIFPLMACKVHVSNSELNWICKEDNVWSIEYELP
                     LFNNVNLKIFPKVNEGKIPRFTDSIASVIVQNCDTKDTIHIKGSEIDILYQLVKEIEK
                     INPDFILTEDGDSFTFPYLTHRSEINQVD"
     gene            complement(1025..1963)
                     /locus_tag="VD694_04490"
     CDS             complement(1025..1963)
                     /locus_tag="VD694_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HXW11998.1"
                     /translation="MKKERIGKSSNLSDNSDETYFNYRSIRLVTKSNETPEGDGFVVH
                     RCFPSEALRNLDPFLLLDEMGPLDLLPYESKGFPEHPHRGFVTVTYMLDGRFEHKDSQ
                     GNSGKLGPGDVQWMTAGSGLVHSEMPEKEFAKNGGRLHGFQLWINLQKTDKWTKPDYQ
                     DVPSTRIPQVSTPDGKVSAKVIAGNYLDAKAVINTLTPILYLHFTLQPGGQVVQSVPK
                     DYNTFAYTISGKGFFGKDKTIVGEKNLIVFENDGEIISIRESDNAKSPLEVLLIAGMP
                     LNEPIVQYGPFVMNTREEIDKTLEDYRNGRIGKIDF"
     gene            complement(2158..2535)
                     /locus_tag="VD694_04495"
     CDS             complement(2158..2535)
                     /locus_tag="VD694_04495"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HXW11999.1"
                     /translation="MSEDKLSQLSNFKYINIETFKKNGSVVKTPIWFIIYQGIIFFRT
                     DSKSGKVKRIRNNPHVRIAPCDIRGNLKGTWFDGKAKFADSKESSIVFSMIDKKYGFL
                     TAIIRSFNKIRGTSPVVMAIVLD"
     gene            complement(2721..3953)
                     /locus_tag="VD694_04500"
     CDS             complement(2721..3953)
                     /locus_tag="VD694_04500"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HXW12000.1"
                     /translation="MNFSLDWLSRDGKLLLSARILRTFGYGFLSVVIAIYLRFLGFGD
                     IQIGLLLGSTLVNSVIFTIFASFYADRIGRRNVLVIYASLMSISGLMFTLTDNYFLLI
                     LAAFIGTINVTGSETGAFLTIEQAILPQTIRDKKKMNTIFAFYNMVGTLAMSAGILLS
                     GLPSLLQEQYFGINHIESFKILFMLYSILGLVVMIVYFMISKDIEIKPNVNKSVRQTL
                     SSGSKKIVGKLSALFAVDSFAGGFVIQSVVSLWFFTRFGADLIILSHIFSAAGILTAL
                     SYIAAAKIADRIGLVNTMVFTHIPSNVLLILVAFAPTLQLAIIIYLIRMGLSQMDVPT
                     RQSYIVSIVNEDERTAASGLTNVSRNIAQTVSPSVIGYIFQSFLALSGPFVLGGVIKI
                     IYDLALYFNFRNIKSRDE"
     gene            complement(4067..4357)
                     /locus_tag="VD694_04505"
     CDS             complement(4067..4357)
                     /locus_tag="VD694_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12001.1"
                     /translation="MKFLVRAQIPTEAGNKMVKNPKFLQNLEDYMKKVNTEAAYFFEA
                     GGDRTFAFIVNMDSADMIPSIAEPLFQDIGAKVEFHPVMVLEDLKKSLGSPS"
     gene            4656..5642
                     /locus_tag="VD694_04510"
     CDS             4656..5642
                     /locus_tag="VD694_04510"
                     /EC_number="4.4.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HXW12002.1"
                     /translation="MLDDLFKERVDGKKPRQEGLTLTVDKLESFDRENFEILAAFIDQ
                     IKIYNTYPLLISNDLLQKRISYFHDFDIKVSTGSTLTEYAISENSLEKYIKECAKMGF
                     DIIEIGENNIDMDIDKKKKISESILSAELTFNWKIGKKDPRHQIGIDNTLLRIEDVIK
                     VGAKKVILEANEGISVGIYDQNGSVIWNYVAALTAKYPPNTFIFEAPLQTQQSALIAE
                     FGQRVNLAEINIDNVASVESQRRGFLSKSSFGMSFSQKEMGGGPASKFIYYLIKTRNP
                     IEQSDLIGITHLPRRTVQSAIEDLKNQGFIIERNSLDDSRRKVYYPVKSEWL"
     gene            6577..7743
                     /locus_tag="VD694_04515"
     CDS             6577..7743
                     /locus_tag="VD694_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HXW12003.1"
                     /translation="MNKKLKVMAVLTTLLVAGFIVTPSLSTHANAQLAQKKVFRLGYF
                     PNITHAQAVIGVGNGDYQKALGDNVELKSLTFNAGPSATEALLANQIDATYMGPNPTV
                     NGYVVSEGNSVRVISGVASGGAVFIVRNDSGIQSSKDLGGKKFASPQIGNTQDVALRK
                     YLLDNGFKTKDKGGNVEILPVKNPDILTLFLKKEIDGAWVPEPWGEKLIKEGNGKLFL
                     DERTLWPEGKFVTANIIVNPEYLRNNPDVIKKFLGAHVNETQWINSHKEEALKTFNVE
                     LKKLTGQTIPEDELKAAVSRLELTYDPLQETLIKSANDAFEVGFLGKTKPDLGGIFDV
                     NILNEVLKEKGLQGVGGDQNQTLATSNGTSTAVTTKLRDDQTYFQAVYSGAGVK"
     gene            7740..7874
                     /locus_tag="VD694_04520"
     CDS             7740..7874
                     /locus_tag="VD694_04520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12004.1"
                     /translation="MSHKTISDSSYIHPEVLVDTKWLEDHLQDKKLRIAEVDYDASAN
                     "
     gene            7887..8354
                     /locus_tag="VD694_04525"
     CDS             7887..8354
                     /locus_tag="VD694_04525"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HXW12005.1"
                     /translation="MPGAVLIDWKKDINNPIQRNIISRTQYKSLLQRIGVRNDTTIVL
                     YGDFNNWFEAFAFWVLKYYGYGQVVLLNGGRKKWLEEDRPITKDIPTYPYGNFIAAEP
                     DPTIRVYLNYVKESLGEKILVDVRSNKEFTGEILAPPEYPTEHAQRGGYIQEP"
BASE COUNT         2857 a         1483 c         1493 g         2639 t
ORIGIN      
        1 aatctacttg attgatttcc gatctatgcg ttagataagg aaatgtaaat gaatcaccat
       61 cctctgtaag aatgaaatct ggattaattt tttctatttc tttaacaagt tgatataaaa
      121 tatctatttc ggaaccctta atatgaatag tatcttttgt atcacaattt tggacaatta
      181 ctgatgcaat tgaatcggta aatctaggta tctttccttc atttactttt gggaatatct
      241 ttagatttac gttattaaat agtggtaact catattctat agaccataca ttatcttctt
      301 tacatatcca attgagttct gaattagata catgaacttt acatgccata agaggaaaaa
      361 tatcgtgttc ataaaaatag gattgttctg gtagaatgtc tacattatat agccggaatt
      421 gtccaaatct acccattctc tctatttttt ttgctaattt tagtgagtaa gtagaatcct
      481 ttaattctag ttcaaggact tgagattttt taatatcagt tatcaattca tatcttgaaa
      541 caaaattata ttcctttatc atggagagta tttcattgtt ctctatgagg gattttaaca
      601 aaaacatgtc agaggcaatg tagattttat gattccatct cttatcttca actctaatgg
      661 ttgtagcaga attagctttt tttatccaga aaatcatatt gccatttaaa ggatatgcat
      721 caaatagcca accagatatc attttactct aatggtttta gatatcattt atcaactggg
      781 atgctgtgat acaaaatagc ttgttgaaat tttttatcat ggatttttta atacactgat
      841 attcaattag atgaaacaat aactcaatct tttcaatttt gaattatata ataggaaagg
      901 attctatcag gcggggaggg gttaaaaata gtagcaagta atatcatgaa catgcaaggc
      961 caaataaaat aatattaatg ataataaaaa taaaacagta aaaataggaa tggcctaatt
     1021 ctttttagaa atcaatcttt ccaattctac catttcgata atcctccaac gttttatcta
     1081 tttcttcccg agtattcata acaaaggggc cgtactgaac tattggttca ttgagaggca
     1141 ttcctgcgat aagcagtacc tcaagaggag attttgcatt atctgattct ctaattgaaa
     1201 taatttcacc atcattttca aacacgatca agtttttttc tccaactata gtcttatctt
     1261 tgccaaaaaa acccttacca ctaatagtat atgcaaatgt attataatct ttgggaacgg
     1321 actgcacaac ctgccctcct ggttgcagag taaagtgcag gtagagaatt ggagttaagg
     1381 tgttgataac tgctttggcg tcaagataat ttcctgcaat tactttggcc gatactttac
     1441 catccggcgt gctgacttga ggaattcttg tagagggaac atcttggtaa tcaggtttgg
     1501 tccacttgtc tgttttctga agatttatcc atagctgaaa tccatgcaat cttccaccat
     1561 ttttggcgaa ttccttttct ggcatttccg aatgaaccag acccgaacct gctgtcatcc
     1621 attgaacatc acctggtcca agctttccag aattaccttg agagtcctta tgttcaaatc
     1681 tcccatcaag catatatgta acagtcacaa aacctctgtg aggatgttcg ggaaagcctt
     1741 tactctcata tggtaataaa tccaaaggac ccatctcatc caaaagtaag aaaggatcta
     1801 gatttcgaag ggcctctgaa ggaaagcacc tatgtaccac aaagccatcg ccctctggag
     1861 tttcattact ttttgtcaca agtcttattg aacgataatt gaaataagtt tcatcagaat
     1921 tatccgagag attactactc ttcccaattc tttccttttt catatactat attaagtaat
     1981 atcatattta agtaaggttg tgttcaattt tattctgagt tgctggttaa taatcattca
     2041 tagccgtgat ttgatacagt ttcaagtaac ttcatacagg cagtcttgcc acagatagaa
     2101 aacaaatagc tctgaacaac aacactaatt tcaaattatt ctaagattca tcagaatcta
     2161 atccagcact atcgccatta ctacaggact tgtgcccctg atcttattaa atgatctaat
     2221 aatagcagta agaaacccat attttttatc aatcatagaa aatacgattg aagattcttt
     2281 tgaatcagca aattttgcct ttccatcaaa ccaggttcct ttaaggtttc cacgaatatc
     2341 gcatggtgca atccttacat gaggattgtt tctgattctc tttaccttgc ctgatttaga
     2401 atcagttcta aaaaagataa ttccttgata aatgatgaac caaataggag ttttaactac
     2461 agatccattt ttcttgaaag tttcaatatt gatgtatttg aagtttgata gttgagaaag
     2521 cttgtcttca gacatgtatg attattaaaa tagattggac ttattagtga atctctgata
     2581 tttggtttca catccaaatc atttgaagga aagtgaaaaa agaactgtgg aaagttgcgc
     2641 caatgtcttg attagatttc tttcccgttc attgcatatg tacaatatca aagaaacagt
     2701 aacgtaaatc tgatcaaata ctattcatct cttgatttta tgtttctgaa attaaaatag
     2761 agtgccaaat catagataat ctttatgaca cctcccagca caaatggtcc tgaaagagcc
     2821 aaaaatgatt ggaaaatata tccaatgacg gatggagata ccgtctgtgc aatatttcgt
     2881 gaaacattag taagtcctga agctgcggtt ctctcgtctt cattaacaat ggatacaata
     2941 tacgattgcc ttgtcggaac atccatctgc gaaagaccca ttctaattaa ataaattatt
     3001 atggccaatt gcaatgttgg agcaaaagca acgaggataa gcaagacatt tgaggggata
     3061 tgtgtaaaaa ccattgtatt tacaagacca attctatccg caatctttgc tgctgctatg
     3121 tatgacaagg cagtcaagat accggctgct gaaaaaatat gtgacaagat aatcaggtca
     3181 gctccaaatc tagtaaagaa ccacagagaa acaacacttt ggataacaaa acctcctgca
     3241 aacgaatcaa ctgcaaaaag agcagatagc ttaccaacaa ttttttttga tcctgaggat
     3301 agagtttgcc taaccgactt gtttacattt ggttttattt caatatcctt agagatcatg
     3361 aaatatacta tcattacaac caaaccaaga atactataca gcataaagag aatcttgaat
     3421 gattctatgt gatttattcc aaaatactgt tcctgtaaga gagatggtag gcccgaaagt
     3481 aatattccag cagacatagc taatgttccc accatattat agaatgcaaa aatcgtattc
     3541 atcttttttt tatccctgat tgtttgtggc aaaattgctt gctctattgt tagaaatgca
     3601 ccagtctctg atccagtaac atttatagtt cctatgaatg cggctaatat taacagaaaa
     3661 taattatcag taagtgtaaa catgagtcca gaaatagaca ttagggaagc ataaatgaca
     3721 agaacattcc tcctgccaat tctatcggca taaaagcttg caaatattgt gaagattaca
     3781 ctgtttacaa gtgtcgaacc taaaagaagt cctatctgaa tatcaccaaa tcccaaaaac
     3841 ctcagatata tcgctatgac gacgctaaga aatccataac caaatgtcct gagaattctt
     3901 gctgaaagta acagcttgcc atctcttgaa agccaatcga gagaaaaatt catacgcttt
     3961 actcataatt taatatagat tgaaataaaa tatgggatac aagtttcaat taaggttgat
     4021 gaaacctatc taacgttatt tctaaatcct cttatttata ggacgcttaa cttggacttc
     4081 caagtgattt ttttagatct tctaatacca ttactggatg gaactcaacc tttgcgccaa
     4141 tgtcctgaaa taatggttcg gcaatgctag ggatcatatc ggcactatcc atgttaacta
     4201 taaatgcaaa agttctatcg ccccctgcct caaaaaaata cgcagcctca gtgttaactt
     4261 tcttcatata gtcttcaagg ttttgcagaa actttggatt ctttaccatc ttattgcctg
     4321 cctctgtagg aatttgagcc cttactaaaa atttcataat taagttaata ttgcatgata
     4381 taaaaatttt tgataaattt aaaagtgttt attaaacgcg ttttcgaatt tcaactatta
     4441 aagaccttta atcgtcgatt atgtcattct agcatgtatg cgctacatgt attcataaga
     4501 tggatcttac cttgcagttc aaagttggct ccgatatcaa acaaacacta gaaatgcagt
     4561 aatcttgaat atgtgcacaa ttgtcataat ccttggtaaa tcgtatctgc attcagtaac
     4621 ttcaatatat gcaacttttg tagcagatat gtattatgct cgatgatctt ttcaaggaga
     4681 gagtcgatgg taagaaacct cgtcaggaag ggctcacact tactgtagat aagcttgaat
     4741 catttgatag agaaaacttt gagatcttgg ctgcatttat tgaccaaatc aaaatctaca
     4801 acacatatcc attattaatc tccaatgatc ttcttcagaa aagaatatca tattttcatg
     4861 attttgacat taaagtttca actggcagta cactcacaga atatgctata tcagaaaatt
     4921 ctcttgaaaa gtacattaaa gagtgcgcca agatgggatt tgacatcatc gaaattggtg
     4981 aaaacaacat tgatatggat atcgacaaaa aaaagaaaat atctgaatcg atactttccg
     5041 cagaattgac atttaactgg aagatcggaa aaaaagatcc taggcatcag atcggaattg
     5101 acaataccct cttgaggatt gaagatgtca taaaagttgg tgctaaaaaa gtaatcctgg
     5161 aagcaaatga aggtattagc gttggaatct atgatcaaaa tggttcggta atttggaatt
     5221 atgtagctgc tcttacagca aaatatccac caaatacctt tatttttgag gctccccttc
     5281 aaactcaaca atctgcattg atagcagaat ttggtcagcg ggtgaacctt gccgaaataa
     5341 atattgataa tgtcgcttct gtagagtctc aaagacgcgg atttctatcc aaatcctcat
     5401 ttggcatgtc attctctcaa aaggaaatgg gtggaggtcc tgcctcaaag tttatttatt
     5461 atttgataaa aacaagaaat ccaattgaac aaagcgatct gataggtatt acccatttgc
     5521 caagaaggac tgtccaaagc gccattgaag acttgaagaa tcaaggtttc attatagaac
     5581 gaaatagttt ggatgatagc agaagaaagg tgtattatcc agtcaaatct gaatggttat
     5641 gaccatatcc gcactatttg aaatgctcaa tacactagac tgttaatatc taaatacact
     5701 atactaagat tggcattctc tttgatttag taatgtttag acctgattac tctgtcatat
     5761 tattcgttac taagtgaagc cctcaaatat gttgctttca taagagataa tgaactcttt
     5821 tagtatagat atgaggaatg taccgtccta aattcaaata tcaccagaag gaaaattgaa
     5881 agtaaaagct caaaagatgg aaatattgaa agtaaaatgt cattgtcatt tatgggaaaa
     5941 aagtatttct gctttgagta catctagttt tatttctagt tttacttcaa caccaaagtc
     6001 aagttgtatt tttccaattt acttgccaaa ttatgactat gcaggcttga ggattatctt
     6061 taagtgagca atttcctcta atagcgctat tcgatcctgc atgctttggg cataatccag
     6121 agatccttca catgccacta tttgtcctaa taaaatgctt cttttaccaa cacaaagacc
     6181 atggaagctc tctgcaatag agtaagctac agttcgattg ttattgcatc cacatgtctt
     6241 gcttctaatt caaaggaatt ttctaacttc ccgatgttca agttttcatt tgatctacct
     6301 tgtgatgaac taacctcttc ttgcattgct tgttttcaac atatgaattt tcatcatcag
     6361 ttatgcagtt aatgattgca aatatataga atctcaaatg cgcaatatgc aatatttaga
     6421 tgcctactat gcgtattaat cgggctcatt acttaataaa tcctggcgta caagtcaagc
     6481 acagcattgg cacgataaac cggcataatt tgcgcctaat gctataatta tacgtatttg
     6541 caagtattca aatatgcttt tggttaggta ggaggcatga acaaaaaatt aaaagtcatg
     6601 gcagtactga ctacgttact tgttgcagga tttatcgtaa cgccgtcact ctcaactcat
     6661 gcgaatgcac agttagcaca aaaaaaggta tttagactag gatactttcc taacataact
     6721 catgcacagg cagtgattgg agtaggaaat ggagattatc aaaaggcttt gggagataat
     6781 gtagagctta aaagtttgac ctttaatgct gggccatcag caacagaagc cttgctagcg
     6841 aatcaaatcg atgcaactta catgggtcca aatccaaccg ttaatggtta tgttgtttcc
     6901 gaaggaaatt cagttagagt aatatctgga gtggctagcg gtggtgcagt attcatagta
     6961 agaaatgatt ctggcattca atcctcaaaa gaccttggtg gtaaaaaatt tgcaagtcca
     7021 caaataggta acacacaaga tgtggcactg agaaaatatc tactggataa tggattcaaa
     7081 acaaaagata aaggtggaaa cgttgagatc cttcctgtaa agaatcctga catcttgaca
     7141 ttgttcctaa agaaagaaat cgatggagct tgggttccgg aaccatgggg tgaaaaactt
     7201 atcaaggaag gcaatggcaa attatttttg gatgaaagaa ctttgtggcc ggaaggaaaa
     7261 tttgttaccg cgaatataat cgttaatcct gagtatcttc gtaacaatcc tgacgtaata
     7321 aagaagttct tgggagctca tgtaaacgag acacaatgga ttaacagtca caaagaagag
     7381 gctctaaaaa ccttcaatgt tgagctaaag aagctaacag gccaaactat cccagaggat
     7441 gagctcaaag cagctgtctc aagactggag ctaacatatg atcctttaca agaaactctt
     7501 atcaaatcag caaacgacgc atttgaagta ggtttccttg gaaaaacaaa acctgacttg
     7561 ggaggtattt ttgatgtgaa catacttaat gaagtactca aagaaaaagg acttcagggt
     7621 gtgggaggag atcaaaacca aactttagca actagtaacg gaacttcaac tgcggtgaca
     7681 acaaaattga gagatgatca gacatatttt caggctgtat atagtggtgc tggtgtaaag
     7741 tgagtcacaa aactatttct gattcatctt atatccaccc agaggttcta gttgatacta
     7801 aatggctaga ggatcacttg caggacaaaa aacttagaat tgcagaagta gattacgacg
     7861 cctctgctaa ttaagaacta ggtcatatcc cgggcgctgt attgatagat tggaaaaagg
     7921 atatcaataa tcctattcaa aggaacataa taagtagaac acaatataag agtcttttac
     7981 aaagaatagg tgttagaaac gatacaacga ttgttttata cggggatttt aacaattggt
     8041 ttgaagcatt tgcattctgg gtgttaaagt attatggtta cggacaagtt gtgttactaa
     8101 atggcggacg aaagaagtgg ctggaggagg atagaccaat taccaaagac attcctactt
     8161 atccttacgg caattttatt gctgcagaac ctgatccaac aataagagtc tatctaaact
     8221 atgtcaaaga atcattaggt gaaaaaatat tggttgatgt aaggagtaac aaagagttta
     8281 caggggaaat actagcgccg ccggaatatc ctacagaaca tgctcaaaga ggtggatata
     8341 tccaggagcc gtaattattc cttgggctca agcagtaaat gaggatggaa cattcaaatc
     8401 catggaagag ttaaagcatt tatatgaatc cgagggagta aagccagata aggaaattat
     8461 ttcatattgt ag
//
LOCUS       DASPFX010000210         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1481550, whole genome shotgun sequence.
ACCESSION   DASPFX010000210 DASPFX010000000
VERSION     DASPFX010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1481550"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..819
                     /locus_tag="VD694_04530"
     CDS             <1..819
                     /locus_tag="VD694_04530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12006.1"
                     /translation="EPIPSEIRYIQRRGRTGRRASGSVIILAAKDTIDERYLNASKRR
                     MERMNQTLRTVNSILKPMERTSSFIPDPMIAKEISFIEASRTKLGARMEKKILQTQAG
                     ETDTPTAPSTVAERLVPHRVPLLDSDQFYTTQFVRDVNNAARKIHSLLTKKGKSGEDV
                     DIIRESLGLDNTTLIEVLNKLEKLKRIQWLDDATIILSENLEIMHGEIHDIYIEKILS
                     GTTLVMIDGKWHARLNHYDYEGPRHLLKKGTEFKAVSELYRNGKTFCVRIKQIV"
     gene            1093..1758
                     /locus_tag="VD694_04535"
     CDS             1093..1758
                     /locus_tag="VD694_04535"
                     /inference="COORDINATES: protein motif:HMM:NF024898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HXW12007.1"
                     /translation="MIIKEIRNLTHKEFEDLCSIYLSTFPLENAKQLDIYLNHIYDML
                     RNDNRYHLYAAVEDSSMIGISLLYIFEHLKMALLDYMAIIPNFQRRGIGRMLFEFTNN
                     ELNRLIPDNIGLLLEVPKENVSDPDEKLRRKRRIQFYSRLGVRVLKSVNYLLPIQIDG
                     DAEEMYLMIKLSKNITWISKKSIANFIDSVYTKVYDYRNSDLLSKTTANLPDVIDIEE
                     LKV"
     gene            complement(1908..>2581)
                     /locus_tag="VD694_04540"
     CDS             complement(1908..>2581)
                     /locus_tag="VD694_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12008.1"
                     /translation="LDWPMDSTDEGKDCWVKGYDSGFAGKYDKDRADRCAQENDEYNR
                     SWGYACRDGGFTENECNDFKNNPVDLDHETLQEENRRACYDDGYEDGRNSNSFDKDRD
                     SGCSEYSSSYETGFSAGCQSVEGNTNDSCELIIEGQERYCPNNPDDPACTEFLHDASN
                     KQPPEGGICALPQQERTFTGCFKDQDPEKYCLNHNDPAFCKTIGDICDADGFVKPEDA
                     YCTID"
BASE COUNT          882 a          455 c          447 g          797 t
ORIGIN      
        1 gaacctatac ctagtgaaat aaggtatatt cagagaagag gtagaactgg aagaagagcc
       61 tcaggttctg taattatact tgcagccaag gatactatag atgaacgtta tctcaacgct
      121 agcaaaaggc gtatggaaag gatgaaccag acgttacgta ctgttaattc tattcttaaa
      181 cccatggaaa gaacaagttc atttattcca gatcctatga tagctaaaga aatatccttt
      241 attgaagcca gtagaacaaa actaggagca agaatggaaa aaaagatatt acaaacacaa
      301 gcaggggaga cagatactcc tactgccccg tcaacagttg ctgaaagatt agtaccacat
      361 cgtgtaccat tgctagatag cgaccaattt tataccaccc agttcgtcag agatgtaaat
      421 aatgctgcaa gaaaaataca ttcattatta acaaagaagg gaaaatctgg agaagacgtt
      481 gatatcatta gagaatcatt aggtcttgat aataccaccc tgattgaagt gctgaataaa
      541 cttgagaaat taaaaaggat acaatggtta gatgacgcaa ctataatact ctctgagaat
      601 cttgaaatta tgcacggcga aattcatgat atatatattg aaaaaattct ttctgggact
      661 actttggtaa tgatagatgg aaaatggcat gctagattaa atcattatga ttatgaagga
      721 ccaagacacc tcctcaagaa gggaaccgag tttaaagcag tatctgagct ttaccgtaat
      781 gggaagacgt tttgtgtaag gataaaacaa atagtataac gctttgattg ttttcttgca
      841 tttaatcaat tatctcgcct atcatgcgtc aattagttaa tcaagagatc caaaactttt
      901 atcattatcc aaatgacttt agtttataga tttaatccga aaactgactt ttcagtatat
      961 aaagtttgag atgcagagat gatatttgaa cttatgaata taatgctgca acatacaaat
     1021 aatatatctt ctgatctttt atggataacg tatcattatc ttaatatcat ctatagttaa
     1081 atttcttcct ttatgatcat aaaggaaatt agaaatttaa ctcataagga atttgaagac
     1141 ctttgtagca tatatctttc aacctttcca ttggaaaacg ccaaacagct ggacatatat
     1201 ctcaatcata tctacgatat gcttagaaat gataatagat atcacctata tgctgctgta
     1261 gaagatagct caatgatagg catctcgcta ttatatattt ttgaacattt aaaaatggcg
     1321 ttactcgatt atatggcaat tatcccaaat tttcaacggc gaggtatagg tagaatgtta
     1381 tttgaattca caaataatga gcttaatcgc cttattcctg ataacatagg attattatta
     1441 gaagtaccaa aagaaaatgt gtctgatcca gatgaaaagc tgaggaggaa gagaaggatc
     1501 cagttctact ctagacttgg agtgagagta ttgaaaagtg ttaattattt acttccaata
     1561 caaatagatg gagacgcaga agaaatgtac ctgatgatca aactttcaaa gaatataact
     1621 tggatatcaa aaaagagtat cgctaatttc attgactctg tatatacaaa ggtttatgac
     1681 tatagaaatt ctgatttgct tagcaaaact actgctaact tgcctgatgt cattgacatt
     1741 gaggaactga aagtataggt agttgcgaat cttatcaaac atagaaagaa ctattgatga
     1801 gaatgaagta agctatccat atgatgaagt tattacatgt agaataacta gagggttaat
     1861 ggagctgcta actataataa cagccataaa ataccttttt aggattttta atcaattgtg
     1921 caatatgcat cttcaggctt tacaaaacca tctgcatcac agatatctcc aatggtctta
     1981 caaaatgctg gatcattgtg gttgaggcag tatttttcag gatcttgatc tttaaagcat
     2041 ccagtaaagg tacgctcctg ctgtggcaga gcacaaatgc caccttcagg tggttgttta
     2101 ttgctagcat cgtgtaagaa ttcagtacaa gctggatcat ctgggttatt agggcagtac
     2161 ctttcttgcc cttcaattat taattcacag ctatcatttg tattaccctc aactgattga
     2221 cagcctgcac tgaatccagt ttcgtatgaa ctactgtact cagaacatcc actatctcta
     2281 tctttatcga aagaattact attcctgccg tcctcgtatc cgtcatcata acaagctcgt
     2341 ctattctctt cctgcaatgt ttcatgatct agatcaacag ggttgttttt gaaatcatta
     2401 cattcgtttt ccgtaaaacc cccgtctcga cacgcataac cccaagatct gttatattca
     2461 tcattttctt gagcacatcg atcggctcta tctttatcat attttcctgc aaatcctgaa
     2521 tcataacctt ttacccaaca atctttacct tcatctgtag aatccatagg ccagtctaat
     2581 c
//
LOCUS       DASPFX010000211         3975 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1651329, whole genome shotgun sequence.
ACCESSION   DASPFX010000211 DASPFX010000000
VERSION     DASPFX010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1651329"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(881..1246)
                     /locus_tag="VD694_04545"
     CDS             complement(881..1246)
                     /locus_tag="VD694_04545"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12009.1"
                     /translation="MMICDDEPDMRLLYGLVFGSRYDVIIVNSGEECIERYAEETKRG
                     NKISLILLDYKLGGMLGDSVARKIKECNETKIILNSAYDVNDVLIRELESGNYISKYI
                     QKPFDTDRLTDLVAEIVKN"
     gene            complement(1579..2211)
                     /locus_tag="VD694_04550"
     CDS             complement(1579..2211)
                     /locus_tag="VD694_04550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12010.1"
                     /translation="MSKREETRATEDTQRVAEEAKNIRDKHSAVKTLQIGQQQAVTQE
                     FQSTVNRSLDETKENVRKSIDESRDQIPRYTNVVKNYQEQELESTGKIAEEYIEAQKS
                     VMDSAVSWSAAYYENANRMFNYWYSPRVPAEIWARAVSNIAENVSASVRIGNDILFGN
                     IEAFGNAFERAQRHTKELSRINVDNAKTIANTAKETAAELSDNRQSEVYA"
     gene            complement(2928..3134)
                     /locus_tag="VD694_04555"
     CDS             complement(2928..3134)
                     /locus_tag="VD694_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12011.1"
                     /translation="MGQDKESTKNIGHKIKKGAEFIGHEIKENTELAEHETGMHKIKK
                     DVQNAGHDAKNGSKSALNKMKKAI"
     gene            3272..>3975
                     /locus_tag="VD694_04560"
     CDS             3272..>3975
                     /locus_tag="VD694_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12012.1"
                     /translation="MHRTKAATIFSKVDPDKRLFMLMLVVVITITADSQIGYIADFIP
                     EQLSSSGGVFVFILIAVIFVVTQYFILDYVKQLNKETRQRVPHLSRLHTGISVAHYLL
                     AVVVAVVILQILFIQQYNIIPLYIVYAIGYGLWIVILALLARAFFSWYRLSKNGMVLI
                     FTLSMIAYVINGITGLVEYSDMLGQQKKVITSADVAYFPEFSIESLKGQLGVINSLVS
                     SVAYILTWIGTVKMLFP"
BASE COUNT         1076 a          753 c          704 g         1442 t
ORIGIN      
        1 tcattgtgat tgttgcagcc tagatgaatg ttggttagat tggtacagta aatagcagct
       61 atgaaatttg gcgatcggtg aaacatcaat tgcgatagct caagaaagtc aatgttaaca
      121 ctactactca aaacaatact acatcgatac cacttaattc aacagaaatt gaattaggct
      181 cagagatgaa cctatagtat gacatggctg gaaacgaata gctctaagat aaataatact
      241 ccggtaatcg atgttgacaa tcaattggtt acacaacaag cagaataggt tattgagatc
      301 tcagactttt tttactgctg tttaacttga tatgccatat actatgaagg tctatgagga
      361 accattttat tttgtcattt ctaaaataga tctgataatt agtaagcaaa tttaatccga
      421 gtacactttg aattgtaatg ttctgagaat cacaaaagat gttgacctga cttaattctt
      481 ctatcaatat gttatattat cccataaatg attgcctata ttacaatgct tatattattt
      541 atctcatata tgaattcgac ttttgcatcc gagcggattg acaggcttgt tcatacctgt
      601 caatcgccgg tcacagtgat tctagccgat agatttcgtg acctgtttgt aatttcttct
      661 gatgaataaa aattttaact ctccgttgaa caccataatg cttatccgct tctttgacct
      721 tcaataagct aaagatacag ctacaaggct agatatatca gtacagattc ggctcgaaag
      781 gtaaccgtct gcgaaggcag tcatgtttac gctgggaata acgatatcgt tattccacga
      841 atcagtagtt ttatgccgtc gcgtccaatg cctatcgcaa ttaattcttt acgatctcag
      901 ccactaaatc agttaagcga tctgtgtcaa atggtttttg tatgtatttt gatatgtaat
      961 taccgctttc caattctctt atgagtacat cgtttacatc atatgctgaa ttgagaatta
     1021 tcttggtttc attgcattct tttattttgc gagcaacaga atcgcccagc atgccaccca
     1081 atttataatc caatagtatg agagatatct tgttgccccg ttttgtttct tctgcgtacc
     1141 tctcaataca ttcttcgcca gaatttacta ttattacatc atatcttgac ccgaagacta
     1201 acccatataa taaacgcata tctggttcat catcacatat catcattatt ttcttctttc
     1261 tttcaaaatt actatgatta tattctaatt tctgggtctt atctatttca cttattctct
     1321 ctgctcttca cagcttttct gtgttctaga ctatatatat gtcgacacac agttatatat
     1381 acgattccat atatgatcgc atatagttcc aatattgtag tcgttgtgta gtaagtatta
     1441 catggtggag gttgctgtat tgttttgctt atgtagaaga tcagcgaaag cctctgctga
     1501 tccgtatgct tccgtcggtg aaaattgcca tctaatcgtt agttgattag tatgacagac
     1561 ttttcttaac aggcagttct atgcgtaaac ttcactttgt ctattatctg ataactctgc
     1621 tgctgtttct tttgctgtgt ttgcgatcgt ttttgcatta tccacattta ttcttgaaag
     1681 ctcttttgta tgtcgttgtg ctcgttcgaa tgcgtttcca aaagcttcaa tatttccaaa
     1741 taagatgtca ttgcctattc ttacagatgc tgagacgttt tctgcaatat tactaactgc
     1801 tctagcccat atctctgcgg ggactcttgg agaataccag taattgaaca ttctattagc
     1861 attttcatag tatgcagctg accagctgac agctgaatcc attacagact tttgagcttc
     1921 aatatattct tccgcgattt ttccagtcga ttctaattct tgttcttgat aattcttgac
     1981 gacattagtg tatcgcggaa tttgatctct tgattcgtct attgattttc ttacattttc
     2041 tttggtttca tctagtgatc tattaactgt ggattggaac tcttgtgtta ctgcttgttg
     2101 ttgtccaatt tgtagagttt taactgcact gtgtttatct cttatgtttt tggcttcttc
     2161 agcgactctt tgagtgtctt cggtagctct tgtttcttct cttttcgaca tctaaaatct
     2221 tctcacgata gctatataaa cactggcatt aatagaattt gtccccgtat aaggtaacat
     2281 caggcgtatt gcgggattaa tacagcgtac gttctgatgt tatcagttaa tagatgcgat
     2341 atctgtagcc aagtcgtata ctaaatttgt gcacactgta tactcaggct gtatcataat
     2401 aatgaataat taaccatttt cattcaaaat ccgcttttgt ttctctttcc catgacatat
     2461 cttgcagttt aaacagatta cagagcgata ttctgatgga tataatggta gatgcgctat
     2521 cacgtcgtac tatggatagg atggtaaaga tgattcgcaa gccgccggca tcgataaaaa
     2581 cttgctaatt gaaatgaatg attcaggtct gtcattcgat gaaatagctg attacctgga
     2641 caaaattggc agttattgcc gtttgataga tctcagagca tgttctgaac ctatttcagc
     2701 atttcagaag tggagttggt cagtataaaa tatgggtacg gcaaacaccg accaacccca
     2761 ggtttgtgcc ggtactgggt caagtccgac caactatcat atactcaact ttactcttaa
     2821 cagtttaatc atggagtttg gtcggtaatg ggtcacacgg ccacgaagtt agatgccatt
     2881 tacgcactta tcactcattt gcagacttct gtataatttg gttttggtta tatcgctttt
     2941 ttcattttat tgagtgcaga ctttgatcca ttctttgcat catgtccggc gttctggaca
     3001 tctttcttaa tcttatgcat acctgtctca tgctcggcca attctgtatt ctctttaatt
     3061 tcatgtccaa taaactctgc gcctttctta atcttgtgcc cgatattttt agtactttct
     3121 ttatcttgac ccatttttct gatcagtctt actcaactta ctataactac gttggtgctc
     3181 ttattgggat taagaccaac cactaacatt gaaatgctgc cacatgttag cttaaagctt
     3241 ttctatgtgg acttaatatg gattgtctat attgcatcga acaaaggccg cgacaatatt
     3301 ttcaaaagtc gatccagata agcgactttt tatgcttatg ctagttgtgg taattactat
     3361 tacagcagat tcacagattg ggtatatcgc tgattttatt cccgagcaac tatcttctag
     3421 tggcggagtc tttgtattca tattaatcgc ggtaatattt gtggtaactc aatattttat
     3481 tctagattat gttaagcaac tcaacaaaga aactagacag cgagtacctc atttaagcag
     3541 attgcataca ggtatatctg ttgcacacta tttgcttgct gtggttgtag cagttgttat
     3601 cttgcaaata ctcttcatac agcagtacaa tattataccg ctctatatcg tgtatgccat
     3661 cggctatgga ttatggattg tgattttggc gcttttagct agagcctttt tttcatggta
     3721 cagactttct aaaaatggca tggtattgat ttttacacta tctatgattg catatgtaat
     3781 aaatggaata acgggactcg tcgaatattc tgatatgttg ggacaacaga agaaagttat
     3841 aacatctgct gatgtcgcat attttccaga gtttagtatt gagtcactga aaggtcagct
     3901 tggtgtgatc aattcattag tttctagtgt tgcctatatt cttacctgga ttggtacagt
     3961 caagatgcta tttcc
//
LOCUS       DASPFX010000212         2719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1576685, whole genome shotgun sequence.
ACCESSION   DASPFX010000212 DASPFX010000000
VERSION     DASPFX010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1576685"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VD694_04565"
     CDS             <1..236
                     /locus_tag="VD694_04565"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12013.1"
                     /translation="YNQNSRGKTIASAYSLRPNLSATVSMPVRWSNLDSILPTDFTIE
                     NVPRLMAKKTDVWEGVITEKQNIGQIIARAREI"
     gene            complement(287..589)
                     /locus_tag="VD694_04570"
     CDS             complement(287..589)
                     /locus_tag="VD694_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12014.1"
                     /translation="MALAKVSENNRKIIIWNFMEEFWENYVNATENNLPTKFNLLDFF
                     HFGILKDGFAENDKISVIKEYAKKKGFVIIKGTEVQITMKGLMEFQKDVHDWDTMR"
     gene            complement(751..1824)
                     /locus_tag="VD694_04575"
     CDS             complement(751..1824)
                     /locus_tag="VD694_04575"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HXW12015.1"
                     /translation="MGHIGYWASQEQYSMQELIDFVQEAEKGGFETTLTSDHFHPWSH
                     TGGHGNFTWVWLSAVAERTKKMKLMTGVTAGVYRYNPGIIAQAFASLDVLYPGRIGLG
                     VGSGEAMNEVPLGFDWPSAEIRVERTIEAIQVINTLWNKTKGLDNSEKFSINGSKINN
                     SYHTSIDNDGFVTFNGKYFKIKNAKLYTPPSTTIPLYMAGSGLQAIKAAAKYTDGLIT
                     TTKPEVAKEVFDTFDNAALEVNKDPVSLQKIAKPKVSYSEDYEKAFKACDFWRTTQID
                     NAFDIDISDPRILEQKAKQEVSDDEQKKSTIIVTSIEDLISPIEKYFQAGFTKLFIHS
                     TSPDEIEFIRLFTKKVLPYFDGR"
     gene            complement(2000..2134)
                     /locus_tag="VD694_04580"
     CDS             complement(2000..2134)
                     /locus_tag="VD694_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12016.1"
                     /translation="MAQEVSGNDNLKCHLCGIMFATQQEKQQHMKLEHQNKEEPTGVG
                     "
     gene            complement(2450..2650)
                     /locus_tag="VD694_04585"
     CDS             complement(2450..2650)
                     /locus_tag="VD694_04585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12017.1"
                     /translation="MAILVILAALGLGWDTFFGGVKKGAEKIGSLPEVKNLTDKAKSE
                     FDNIIGNSSFDAIAIFQKNIKF"
BASE COUNT          864 a          519 c          404 g          932 t
ORIGIN      
        1 attacaatca aaattctaga ggaaaaacga tagcatcggc atactcttta aggccaaatc
       61 tttcagcaac tgtttcaatg cctgtaaggt ggagtaattt ggattcgatt ctacctaccg
      121 actttactat tgaaaatgta cccagactaa tggcgaaaaa aactgatgta tgggaaggag
      181 ttattactga aaagcaaaac attggtcaaa taatagcgag agcaagagaa atttgattcg
      241 gattcactta agtaacaatc tataacaaat tatttttaca agttacttat ctcattgtat
      301 cccaatcatg gacatctttt tgaaattcca ttagcccttt catagttatt tgtacttcgg
      361 tgcccttaat tatgacaaaa ccttttttct ttgcatattc tttgataaca gaaatcttgt
      421 cattctctgc aaaaccatcc ttcaaaattc caaagtgaaa aaaatccaat agattgaact
      481 tggtgggcag attgttttcg gtcgcattca cataattttc ccaaaactct tccatgaaat
      541 tccaaataat gatttttcta ttgttttctg aaactttagc taatgccaat accttacatt
      601 tatctgcaca atattacatt tagaagttca actccaatgg tgaattctac tcaaacgtat
      661 cgatagtaaa attgctaggg atattacagt cacagtggta gtttatgatt tggatatcca
      721 aacctatgca gaatgcttaa ccatatcatc tcatctacca tcaaaatagg gcaacacctt
      781 tttagtaaat aatctaataa attcaatctc atctgggctg gtgctgtgaa taaataactt
      841 tgtaaatcct gcttgaaaat atttttcgat tggagaaatt agatcctcga tagaagtaac
      901 tatgattgtg gattttttct gttcgtcatc agatacttct tgctttgcct tttgttctaa
      961 aatcctagga tcacttatat caatatcaaa tgcattatca atttgtgtag tacgccagaa
     1021 atcacatgct ttgaaagctt tctcataatc ctcagaatag gagacttttg gttttgctat
     1081 tttttggagt gaaactggat ccttgtttac ctccagcgct gcattatcaa acgtatcgaa
     1141 aacttcttta gctacctcag gttttgtggt tgtaatcaaa ccatcagtat atttagcagc
     1201 agctttaatc gcctgcaaac ctgagcctgc catatacaat ggaatagtag ttgaaggagg
     1261 agtatacagt tttgcatttt ttattttaaa atattttcca ttaaacgtta caaacccatc
     1321 attatctata ctagtgtgat aactgttatt tattttagaa ccattaatcg agaatttttc
     1381 tgaattatcc aaacctttgg tcttattcca cagcgtgttt atgacttgaa tagcctcaat
     1441 tgtcctttca actctaatct ctgcagacgg ccaatcaaat cccaaaggta cttcattcat
     1501 tgcttcacct gaaccaacac caagtccaat tcgtccaggg tataatacat ccaatgatgc
     1561 aaatgcttgt gcaattattc caggattata tcgatataca cctgctgtaa ctccggtcat
     1621 caatttcatt ttttttgttc tttcagcaac agctgaaagc catacccacg taaagtttcc
     1681 atgtccgcca gtgtgagacc atgggtggaa atgatcacta gtaagcgttg tttcaaatcc
     1741 tcctttttcg gcttcttgaa caaaatcaat caattcctgc attgaatatt gttcttgtga
     1801 tgcccaatat cctatatgtc ccatatttta gtaagtcatt taatatttat ataccagtta
     1861 caatttacaa tttgaacgat ttctaatgaa agaattttta gaacattacc gtacagggta
     1921 attataacta gaactagaaa gaactaatca aagtctttca tattatcaaa ctcgaaaaaa
     1981 attcagtttt gtagtattat tagccaactc cagtgggctc ttctttattt tgatgttcca
     2041 atttcatatg ttgctgcttt tcctgttgag tggcaaacat aataccacat agatgacatt
     2101 tgagattatc attaccagag acttcttgtg ccattcaaat accgcctcca tttttcaagg
     2161 tggtttggaa catgcataat atttgactct atcatttaaa tctgttactt aaactaattc
     2221 cattatcatt aagccattct attattagca gattgagaca gagttattta agtagataat
     2281 tagccaacca tctattaatc gttttaaatt ttgttgtgca ctaatagtta ggaaatactt
     2341 tcggtttttg gctccgttca ccgaaagtac caattgcatc aaaaacgatg gaagggatgc
     2401 caaacacgga gctggcaaat ccctttcata acacagataa ttatagaaat tagaatttta
     2461 tatttttctg aaagattgca atagcatcaa aggaagagtt accaatgata ttatcaaatt
     2521 cgctttttgc cttgtccgtt aggtttttta cttctggaag actaccgatt ttctctgcac
     2581 ctttcttcac accaccaaaa aatgtatccc agccaagtcc taacgctgcc aaaataacta
     2641 gaatagccaa tataagaaca atccaaccta tcaattaaaa ataattcaga gagagtatgt
     2701 tttaaacttt aactttctc
//
LOCUS       DASPFX010000213         2946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1019639, whole genome shotgun sequence.
ACCESSION   DASPFX010000213 DASPFX010000000
VERSION     DASPFX010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1019639"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..376
                     /locus_tag="VD694_04590"
     CDS             56..376
                     /locus_tag="VD694_04590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12018.1"
                     /translation="MFSDRPARIVTSVNTSDFIGNWHWSVGPKSFNADPPNAALIGEE
                     GNQDIMIVELTNPVHDPTAKTLKYDVVPENTTSTDIPNEFGQSTLVIDVQGNKPCLTV
                     INTG"
     gene            724..882
                     /locus_tag="VD694_04595"
     CDS             724..882
                     /locus_tag="VD694_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12019.1"
                     /translation="MKNNGTNNDIAKKKCSWLYCDSPATEECVYCGRKYCIEHGVRHE
                     LERHGNKT"
     gene            complement(965..1348)
                     /locus_tag="VD694_04600"
     CDS             complement(965..1348)
                     /locus_tag="VD694_04600"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HXW12020.1"
                     /translation="MEQGVFGLVWKCRFEKSFYHFNPAVTLGFLITKHITRLQLLYCF
                     TAEILGALLGSLFVMTEFEREADLGANSSNYVFPLPTIFGIEVLATALLMAGIVVVVY
                     ANGLRGYSGIDIGGIVGLDIFFFAL"
     gene            complement(1427..1804)
                     /locus_tag="VD694_04605"
     CDS             complement(1427..1804)
                     /locus_tag="VD694_04605"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HXW12021.1"
                     /translation="MSKFLTPKDLLDSQVKEFNGGNIDFLMTLYEMDACFASKPGQAV
                     NDLDSIRRTLQDFIHMGAKLEAIVRRVVQASDLALLITEWSNNGNEPDGKPINLVGRG
                     TVVLRRQPNGTWLMVIENPWGTE"
     gene            1968..>2946
                     /locus_tag="VD694_04610"
     CDS             1968..>2946
                     /locus_tag="VD694_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12022.1"
                     /translation="MNPKSLLKNLRKDQQEYYTFLVRECFSGFRNAEHNLKVYNYFSC
                     YAWLFHSSEFFWKSLTILSNRYFDPKHEASEEDMAKISTDLLSNDERLKAYNILSTFP
                     KIKRDLVRYGYYENGTNITVSPEAAFNIDQKNTELDLSKVSWLINKLREIHYYQIFDP
                     PIKIGILSGYVQARNEKPCSYYPHSNYRKSVQWMLDLKEVRNNDGSNLFQASLTSISN
                     LSNGTFSIVINPFGEAYPELGSAEGVGFKTILSYMQDGGILVNSGGQPFVYNWNVNTG
                     SHNLVINFIPISSRVEGDYDDEVIPVLSRNESLPIPPEALVLKRYFDAET"
BASE COUNT          985 a          543 c          529 g          889 t
ORIGIN      
        1 atgaaaatgc aacatcaaca cctgaaccac agttaacgta tcagataaga ccatattgtt
       61 ttctgacaga ccggccagaa tagttacgtc tgttaatact tccgatttca tcggtaactg
      121 gcactggtcg gtaggaccta agagtttcaa tgcggatcct cctaatgcgg ccttgattgg
      181 agaagaaggt aatcaggata taatgattgt tgaactgacc aatccagtgc atgatcccac
      241 tgcaaaaacg ctgaagtatg atgttgttcc agagaataca acatctactg acataccaaa
      301 tgagtttgga cagtcgactt tagtgataga tgtccaggga aataagccct gcctcactgt
      361 gataaatact ggttgatata gtcttaccat gacattcata gttatcagtt tctttagctt
      421 attttgtgta ataggctaac gtgggaagaa ctatgccctt atttagcata gctagcaatc
      481 tggaagatgc ataatgcaaa taattccgaa aagctcttcc taaagcagat agaaagcaat
      541 tcgattatat gttttccaca tctgctttgt acaattctgc atgcgtacgc tgtgctaatc
      601 ctatacgaat acaacttatc attatgtcta tattacttca caaagcataa tttgtgtata
      661 attggtataa ggcgtatatg taatgctcgc ttacaatatg atatcaagaa gtgataaaaa
      721 gcattgaaga ataacggtac caataatgat atcgcaaaga agaaatgtag ttggctctac
      781 tgtgattctc cggctacaga agaatgtgtt tattgcggca gaaaatattg tatagaacac
      841 ggtgttagac acgaactcga acggcatggc aataaaacat agttaaattt tgtaccgcct
      901 attattagac agtggtaaaa gagttaagaa ggataagaat agccagctct accgtgagaa
      961 cttatcacaa tgcaaaaaag aatatgtcaa gaccgactat tcctccaatg tctattccac
     1021 tgtaccctct taatccattg gcatacacta ccactacaat tccagccatc aataaggcag
     1081 tcgctaacac ttcgattcca aatatcgtag gaagtggaaa aacatagttg gatgaatttg
     1141 cacccaaatc agcttctctt tcgaattcag tcatcacaaa taaactacct agtagtgcac
     1201 ccaagatttc agctgtgaaa caatatagaa gttgtagcct tgtaatatgt ttggtaatca
     1261 gaaaacctaa tgtcaccgct gggttaaaat gataaaatga cttctcaaat ctgcacttcc
     1321 aaacaagacc gaaaacgcct tgctccaaat tagatcgata taggaaaaat acctagcaac
     1381 agcacactat ttacggtgac caaaccgttt gacagtcaaa caatatttat tctgttcccc
     1441 aaggattttc tataaccata agccatgtcc catttggttg tcgacgtaga accacagtac
     1501 ctctgccaac aagattaatc ggtttaccat caggttcgtt cccattgttc gaccattcag
     1561 ttattaaaag cgcaagatcg ctcgcttgaa ctactcttct tactatggct tccaatttag
     1621 ctcccatgtg aatgaaatct tgtagagtcc ggcgaatact atccagatca ttaacagctt
     1681 gtcctggctt agaagcaaaa catgcatcca tttcatacag cgtcattaaa aagtcaatgt
     1741 ttcctccatt gaattctttc acttgtgaat cgagcaaatc tttcggagtc agaaattttg
     1801 acattttatg atgttgtaat aataatatat ttaataattt tatttttcag tttcatggac
     1861 aattcggatt gtatgaataa cgtagaactg ctaagggcta cctgacttgc gtttaagtaa
     1921 tcattatagg gctgactgct tgtctataat taagcgtctc tcaaattatg aatccgaaga
     1981 gcttgttaaa gaacttaaga aaagatcagc aggaatatta cacttttctt gttagagaat
     2041 gtttttcagg atttagaaac gcagaacata atttgaaagt gtataattat ttttcatgct
     2101 atgcatggct ttttcattcc tcagagttct tttggaaatc gttgactatt ttatcgaata
     2161 gatattttga cccaaagcat gaagcatctg aagaggatat ggcgaagata tccactgatc
     2221 tactatcaaa tgatgaaaga ttaaaagcgt ataacatttt aagcacgttt ccaaagatta
     2281 aacgagatct tgtaagatat ggctattatg aaaatggaac taacataaca gtttctccag
     2341 aagctgcatt caatatagat caaaaaaata ctgaattaga tttaagtaaa gtaagttggt
     2401 tgataaacaa acttagagaa attcattatt atcagatatt tgatcctcca attaaaatag
     2461 gaattctctc agggtatgtt caagcaagaa atgaaaaacc atgttcatat tatcctcatt
     2521 caaattatcg gaaatctgtt cagtggatgc tagacttaaa agaagtcaga aataacgatg
     2581 gatctaatct attccaggca tcattaacat ctatctcgaa cctaagtaat ggtacctttt
     2641 caattgtaat aaatcctttt ggtgaagctt atccagaact aggcagtgca gagggagtgg
     2701 gatttaaaac aatcttatcc tatatgcaag acggtggaat tcttgttaat tcaggaggtc
     2761 agccttttgt ttacaactgg aatgtaaata ctggaagtca caacctagtg attaatttca
     2821 ttccaatttc aagtcgcgtg gaaggcgatt atgatgatga agtaatacct gtattatcta
     2881 ggaatgagag cttacccatt cctccagaag ccttggtcct taaaagatac tttgatgcag
     2941 aaactg
//
LOCUS       DASPFX010000214         2762 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_920015, whole genome shotgun sequence.
ACCESSION   DASPFX010000214 DASPFX010000000
VERSION     DASPFX010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920015"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VD694_04615"
     CDS             complement(<1..402)
                     /locus_tag="VD694_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HXW12023.1"
                     /translation="MVFLEIHDLSASISGKQILDNLCFEMDRGQVHAIMGPNGSGKST
                     LANVVMGHPKYTVSSGKILVDGENILDLTTEERAKRGLFLGFQYPTEIPGVGYSHFLR
                     NAYNILNKSLSEKQKDREVFLTVKEFHEYLKK"
     gene            487..1017
                     /locus_tag="VD694_04620"
     CDS             487..1017
                     /locus_tag="VD694_04620"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HXW12024.1"
                     /translation="MSRGIFIGRFQPFHLGHIAAIKFAFKKVDELAIVVGSAQASYES
                     QDPFTAGERISMIKDSLNADNIIDCKKTLIIPVPDTNIHSTWTHSVDMLVPKYDVVFT
                     NNAFTGYLFIQRNIKVTEPKLLDRSHLSGTEIRRRMVKNLKWTHLVTEQTQSVIREVG
                     GVERLKKISCISHHRN"
     gene            1115..1597
                     /locus_tag="VD694_04625"
     CDS             1115..1597
                     /locus_tag="VD694_04625"
                     /inference="COORDINATES: protein motif:HMM:TIGR00451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PUA domain-containing protein"
                     /protein_id="HXW12025.1"
                     /translation="MKVHSLSKREIHDITNQIDISWPKNSTLPIKNIQAYVIDDNKRL
                     LVGNNLVAIQLAPDLIVPHLTQHEILNHFASVQVDMNAIKYVCNGANIMRPGITDFSV
                     FKESEIVIVKDQTHKKELAVCISVVDDESGRKMEKGIVLNNIHHIGDMYWELKKTIRT
                     "
     gene            complement(1646..2227)
                     /gene="psmB"
                     /locus_tag="VD694_04630"
     CDS             complement(1646..2227)
                     /gene="psmB"
                     /locus_tag="VD694_04630"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit beta"
                     /protein_id="HXW12026.1"
                     /translation="MPGATAVGITYQDGVILAAEKRISYGNFVVNKNTKKIFQITDQV
                     ASACAGMVADMQVLTRQVGALAKIRRLETRRDMATNSVAKLMSVIMFERRYFPLLTQV
                     IVGGVQTTPEIYTLDPLGSLLPDNYAAVGTGAELALGIIDAEYKKNMSEETSKKLAIK
                     AIRSSIQRDSASGDGIDVLTITKKGIEEESLSL"
     gene            complement(2325..>2762)
                     /locus_tag="VD694_04635"
     CDS             complement(2325..>2762)
                     /locus_tag="VD694_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12027.1"
                     /translation="VTGKGKNKQALDDSDSTLPSYLYSGQSPDMENYENVTVTTQVRK
                     PLMKKTFALKKVGYKIIPYEDETDSRYSFINENVVFVNKANPTYKAESSRGDEFLLRH
                     IMNIVAQAVAETRHPEGKEALELQNRLVSEAIRIHDTFLTKVP"
BASE COUNT          840 a          531 c          487 g          904 t
ORIGIN      
        1 cttcttgaga tactcgtgaa attcctttac tgttaaaaat acttctctat ctttctgttt
       61 ctcactcaga cttttattca aaatattgta cgcgttcctc aaaaaatgac tataacccac
      121 tcctggaatc tcagtagggt attgaaaacc taagaaaaga cctctctttg ctctttcctc
      181 cgtggtcaaa tcaagtatgt tttcaccatc gacgaggatt tttccggatg aaacggtata
      241 ttttggatga cccattacca catttgccag agtactcttt ccagagccgt ttgggcccat
      301 tatagcgtga acttgacctc tgtccatttc aaagcaaagg ttatcaagaa tttgcttacc
      361 actaatgctt gccgacaggt catgtatctc tagaaaaacc acaaatcttt tggtcttcaa
      421 acataatata aatattgagt tactttattc aaaatttaaa ttattcatct tgcattttat
      481 accaatttgt caagaggtat attcataggc aggtttcagc cgttccattt aggtcatatt
      541 gcagcaatca aattcgcctt caaaaaagtt gatgaactag ctattgttgt aggtagtgct
      601 caggcaagtt atgaatcgca agatccattt actgctgggg aaaggatatc tatgataaag
      661 gactcgttga atgccgataa catcatcgat tgcaaaaaaa ctctcataat cccagttcct
      721 gatacaaaca ttcattcaac atggactcat tcagtcgata tgttggttcc taagtatgat
      781 gttgtgttta ccaacaatgc atttaccgga tacctcttta tccaaagaaa tatcaaagtt
      841 acagaaccaa aattactaga tagaagtcat ctttcaggaa ctgaaattag aaggagaatg
      901 gtgaaaaatc tcaaatggac tcacctggtt acagaacaaa cccaaagtgt aatccgggaa
      961 gttggaggag tggaacgttt gaaaaaaata tcctgcatat cccatcatag aaactgagtg
     1021 agaagtaaat taattgttat ctgataattt gtttgaatta atagttgcta gagtatggat
     1081 attgataaat atttcaaaaa ccagaccaag atagttgaaa gtccattctc tatcaaagag
     1141 ggaaatacat gatatcacga atcagattga tatctcttgg ccaaaaaatt caactctccc
     1201 aattaagaat atccaggcct atgtcataga tgataacaag aggctccttg tggggaataa
     1261 tctagttgcg atacaattag cccctgacct tatagttcct catttgacac aacatgaaat
     1321 tttgaatcac tttgcatcag ttcaagttga catgaatgca ataaagtatg tttgtaatgg
     1381 tgccaatatc atgaggccgg gcattactga tttttctgtg ttcaaggaat cagaaatagt
     1441 gatagtaaaa gatcaaactc ataaaaaaga acttgcagta tgcatttccg ttgttgatga
     1501 tgaaagtgga agaaaaatgg aaaaagggat tgtattaaac aacatacacc atattggtga
     1561 catgtactgg gaattgaaaa aaactatcag gacatgatta ttttgacaat atagaaaaat
     1621 agtgactcta aaaatatttt tgaaattata gactcaatga ttcttcttct attccctttt
     1681 tggttatcgt caggacatca attccatccc cgcttgcaga atctctttgt attgaagacc
     1741 ttattgcctt aatagccagt ttcttggatg tttcttcaga catatttttc ttgtattccg
     1801 catctattat tcccaaggcc aattctgctc cagtgcctac ggctgcatag ttatcgggga
     1861 gtagtgagcc cagagggtcc aatgtataaa tttcaggtgt cgtttgcact cccccaacaa
     1921 taacctgagt cagtagagga aagtatcttc tttcaaacat gataactgac atcaattttg
     1981 cgacagagtt tgtagccata tctcttctcg tttccagtcg tctaattttt gcgagagctc
     2041 caacttgtct tgtaagaact tgcatatctg ccaccatacc tgcgcacgca ctagcaacct
     2101 gatctgttat ctggaatatt tttttagtat tcttattaac cacaaaattt ccataggaaa
     2161 tacgtttttc agcagcaaga ataacgccgt cttgataagt tatacctacc gcagtagcac
     2221 ctggcatgaa ttgaaacgcc atatgattgg atagtagtga atgtagttag atttagtcgt
     2281 ttcgtctgtt ctcagactaa ttaaggaggg ttagtttcga tcgctcaggg aacttttgtc
     2341 aaaaatgtat catgaatcct tattgcttcg gaaaccaacc tattttgcaa ttccaatgct
     2401 tccttacctt ctgggtgtcg tgtctctgcg acagcttgtg ctacgatatt cattatatgt
     2461 cgcaatagaa attcatctcc tcttgatgat tccgccttgt atgttggatt tgccttattc
     2521 acaaatacta cattttcgtt tatgaagcta tatctggaat cagtttcatc ttcgtaagga
     2581 atgatcttgt agccaacttt tttcagtgca aaggttttct tcattaatgg ctttcttacc
     2641 tgagttgtaa cagtgacatt ttcgtaattt tccatgtctg ggctttgacc actgtataga
     2701 taactaggca gagtactatc tgagtcatcc aatgcctgtt tattctttcc ttttccagtt
     2761 ac
//
LOCUS       DASPFX010000215         4855 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1715232, whole genome shotgun sequence.
ACCESSION   DASPFX010000215 DASPFX010000000
VERSION     DASPFX010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4855
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1715232"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /gene="folE"
                     /locus_tag="VD694_04640"
     CDS             complement(<1..437)
                     /gene="folE"
                     /locus_tag="VD694_04640"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HXW12028.1"
                     /translation="MKKTALNKRKIEKLVRELIVQLGENPDREGLLGTPQRIADMYEE
                     IFAGYCMNSELEISFSEETDSIIAKDIQFYSMCEHHMLPFFGRMHIAYTPSGKVFGIS
                     KLARLVEKYSKRLQIQERLTREVADEIMKMGVKGVTVVAEGEHL"
     gene            complement(453..1190)
                     /locus_tag="VD694_04645"
     CDS             complement(453..1190)
                     /locus_tag="VD694_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HXW12029.1"
                     /translation="MQRTENKARARVSEIFTSIEGEGIFVGKKTLFIRFSGCHLKCKW
                     CDTKYALPLDSGTEYQIDEIKELITSELQPFTYKVNFTGGEPLLQSDAVIELADFIKK
                     QTNLKTYIESSCFDSELFSKVLPFIDICKVEFKTVDSKVVENEEYDNLLLNEIKCLEL
                     AVESNKTTYIKIVVTNSTDLESFKNLVYKISKKIKPSNIMGFIIQPSHGVDQPTVKKL
                     LDTYDIVQPMFPEVRIIPQLHKEIGAR"
     gene            complement(1177..1887)
                     /locus_tag="VD694_04650"
     CDS             complement(1177..1887)
                     /locus_tag="VD694_04650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HXW12030.1"
                     /translation="MENEKIAICIMSGGLDSLCAAAYVKNYKKYTIKIISFSYGQRAK
                     REIIQSRKLAKTLNSDEYRTVDISFMKKLYGNSNVLTNSKFSIPSKFDHSIVVPIRNA
                     IFITIATAWAFSVNADLIVLGAHADDFHYPDCRPKFIQSITNALNIGEEDKIKNGTRQ
                     KVSMWSPSLEGITKYELLKLGHKMLGDTIFESWSCYSNGKRIHKDMVQCGECESCINR
                     KMAFSKAGIEDKTIYAKN"
     gene            complement(1877..2443)
                     /locus_tag="VD694_04655"
     CDS             complement(1877..2443)
                     /locus_tag="VD694_04655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12031.1"
                     /translation="MPGNVGIESRAFGFLFISIAIAVLSGTVINEFLIAHHIPIYYQL
                     LSWILVFVFVLGITFTKMKNLFRSMRNRMKNSISWPLHVKIINGLSWAGPFLAISIFH
                     PIAHYLILLGIGAGNISTYFFIKHYSNYNNKEQFIVGILAIIMIPVLFLVDVLLAPVI
                     VHQHVLTLSRIFVAISYGIGGIYALNGK"
     gene            complement(2542..2877)
                     /locus_tag="VD694_04660"
     CDS             complement(2542..2877)
                     /locus_tag="VD694_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12032.1"
                     /translation="MSTHSLTFSTPEMTLKKFALWLGDQVSIPEKNETVPRLLTYIKD
                     VNNKSGSTDYLPDTDDSFKPSGAVTDMFKDMTQVKSSPKCHNCNYLLKTASKFCPKCG
                     SRQHSSNGV"
     gene            complement(2946..3467)
                     /locus_tag="VD694_04665"
     CDS             complement(2946..3467)
                     /locus_tag="VD694_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HXW12033.1"
                     /translation="MSFGVDTLGGLSEKLKQLVNETQDHYESFIDDAQLYKKGKIGDK
                     EFFGKIAKFMISLSALNFLSIRVVLEMKSAVDKGSSLKNPTGGVAQPSSGSGFGVNSF
                     VDSGGSIGGNQPSDNDQYLLPEPEQLSEPKFRPVDITIKREANQDSKKNCINCKSSIP
                     VTAKFCPKCGNSQ"
     gene            3612..3686
                     /locus_tag="VD694_04670"
     tRNA            3612..3686
                     /locus_tag="VD694_04670"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3647..3649,aa:Val,seq:tac)
     gene            3737..>4855
                     /locus_tag="VD694_04675"
     CDS             3737..>4855
                     /locus_tag="VD694_04675"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HXW12034.1"
                     /translation="MALISSKLMYIGVISVIIIAVASYGLFFYFQRVNEKSIRESIFE
                     QELERQINSTKSVSQHVGSDLRLVTSMLQDLADSLYLQNEMLSGDKVSNLLEEKFKQL
                     NSVTKVDSLLITDNEGVITTHKASPRMKTFVNIDISSNEYMKQTMDNLQPVYSNGFTG
                     IDGKYRIVITYPITSMEDGHYIGTVVANLPTIEFFKNYGNVNDINSQFLVALDRKGNL
                     LAVGASGDLVGKNFFGNETQQFINYNKVLNNLTKYLLAGNVGHAIYDYGRGERLNTHS
                     PILVGTQLAYFVQVVTPTDRIYLKIDSVLFTEGIKMFSLLTGTTAAIIVLVFLLRKWY
                     SILQDEVTKRTSDLNESNYKLMKANESLKIKDEAQNQFI"
BASE COUNT         1519 a          869 c          829 g         1638 t
ORIGIN      
        1 agatgctctc cctctgcaac aacagttacg cctttaactc ccattttcat tatttcatct
       61 gcaacttccc ttgtgagtct ttcttgaatt tgcaatcttt tagagtattt ctctaccagg
      121 cgtgctaatt ttgatatacc aaagactttt cctgagggag tataggcgat atgcatccta
      181 ccaaagaaag gaagcatatg atgctcgcac atactgtaaa attgaatgtc ttttgcaata
      241 atagaatcgg tttcttcgct aaaactaatt tctagctctg aattcatgca ataccccgca
      301 aaaatctctt cgtacatatc tgcaattctt tgtggagttc ccaaaagacc ttcgcggtcg
      361 gggttttctc cgagttgcac tatgagctcc ctgacgagtt tttctatctt tctcttatta
      421 agtgcagttt ttttcatgtt ttttcccttt atttatctag cacctatttc tttatgtagc
      481 tgtggtataa tcctcacttc aggaaacata ggttgaacaa tatcataagt atctagaagt
      541 tttttaacag ttggctggtc tactccatga ctaggttgaa taataaatcc cataatgttt
      601 gaaggtttta ttttctttga aatcttgtaa accaaattct tgaaactttc aagatcagta
      661 gaattggtta ccactatttt aatgtaagta gttttattac tttcgacagc taactctaaa
      721 catttaatct cgtttaatag caaattatca tactcttcat tttcaacaac tttagaatcg
      781 actgttttga attcaacctt gcatatgtcg ataaatggta ataccttact aaaaagttca
      841 gaatcaaagc aagatgattc aatgtaggtt ttgaggttag tctgtttttt tatgaaatct
      901 gctaattcga ttacggcatc ggattgcaac aatggttctc ctccggtaaa attcactttg
      961 tatgtgaatg gttgaagttc actagtgatc agttccttaa tttcatcgat ttggtattca
     1021 gttccactat caagaggtaa cgcatacttt gtgtcacacc atttgcattt tagatgacaa
     1081 cccgagaatc tgataaacag ggttttcttt ccaacgaata tcccttctcc ttctatacta
     1141 gtaaatatct cactaactct tgctcttgcc ttattttcag ttctttgcat aaattgtttt
     1201 atcctctata cctgctttac taaatgccat cttcctattt atacacgatt cgcattctcc
     1261 gcattggacc atatctttat gaattctttt accattagaa taacaactcc atgattcaaa
     1321 tattgtatct ccaagcattt tgtgacctaa ttttaatagc tcatacttag taatgccttc
     1381 tagagacgga gaccacatgg aaactttttg tctggttcca tttttgattt tgtcctcctc
     1441 acctatgttc aatgcatttg taatagattg aataaatttt ggtctgcaat cggggtaatg
     1501 aaaatcatcg gcgtgagcac ctaacacaat caaatctgca ttgacgctaa atgcccaggc
     1561 tgtggcaatt gttatgaaaa tagcatttct aatgggcact acaatactat gatcgaattt
     1621 ggatggaatt gaaaatttgc tgttagttag tacattggaa ttaccataca gtttcttcat
     1681 gaaactaata tctaccgtac ggtattcatc tgaattcaaa gtcttggcaa gctttcttga
     1741 ttgaattatt tcgcgtttgg ccctttgacc gtaagaaaat gaaattattt ttattgtata
     1801 ttttttgtaa ttctttacat atgcagcagc acagagagaa tccagtccgc cactcattat
     1861 acatattgca atcttttcat tttccattta atgcgtatat acctcctata ccatacgaaa
     1921 ttgcaacaaa tattctggaa agtgttaata catgttgatg aactataaca ggagctagta
     1981 acacatcaac tagaaacaaa actgggatca taattattgc aagtattcca acaataaatt
     2041 gttccttgtt attgtaatta ctatagtgtt taataaaaaa ataagtggag atgttaccag
     2101 ctcctattcc taagagtatc aagtaatgtg caatgggatg gaatatggaa atggctaaaa
     2161 atggtcctgc ccaactaagg ccgttaatta tctttacgtg gaggggccaa cttatgctat
     2221 ttttcattct gtttctcatc gatcgaaaca gattcttcat ttttgtaaac gttattccca
     2281 atacaaaaac aaataccaat atccatgaaa gtagttggta ataaattgga atatgatggg
     2341 caattaggaa ttcgttaatt acagtgccag atagaactgc tattgcgata ctgataaaaa
     2401 gaaagccaaa agctctagat tcaattccta cattaccagg caatggtcta tgagctttag
     2461 tttttcttta atttaaagca tctacaaaac acgaaatcaa gtaggaaaaa cttgcctaac
     2521 tcaatgtaaa attttcatag ctcagacccc atttgatgaa tgttgtcttg aaccacattt
     2581 ggggcaaaat tttgatgctg tctttagaag ataattgcaa ttatgacact ttggtgaaga
     2641 tttgacttgt gtcatgtcct tgaacatatc agtgaccgct ccgcttggct taaatgaatc
     2701 atcagtatct ggaaggtagt cggtactgcc tgacttgttg ttgacatctt taatatacgt
     2761 cagtaagcga ggtacagttt cgtttttttc agggatacta acttgatctc ctaaccacaa
     2821 tgcaaatttt tttaatgtca tctcaggagt cgaaaaagtc agggaatgtg ttgacatgta
     2881 ctcttcagta gcagctctcc cattaaagat ctccataata aattaaaaca aaatggagtt
     2941 tttaattatt gcgaattccc acactttgga cagaatttag ctgtaacagg aattgatgac
     3001 ttgcaattga tacaattctt ttttgaatcc tggttcgctt cgcgcttaat tgttatgtcg
     3061 actggccgga attttggttc acttagttgt tcaggttcgg gcaatagata ttgatcattg
     3121 tctgatggtt gatttccacc aatacttccg ccgctgtcta caaacgaatt gactccaaat
     3181 ccagatccag atgaaggttg tgctacacct ccagtcggat tttttaatga tgaacctttg
     3241 tccactgcgg atttcatttc gagtactact ctaatagaga gaaaatttag tgcagaaaga
     3301 gatatcatga attttgcgat tttcccgaaa aattctttat ctccgatttt tccttttttg
     3361 taaagttgag cgtcgtcgat aaaagattca taatggtctt gcgtctcgtt taccaattgc
     3421 tttaatttct cgcttaaacc tccgagtgta tcaacaccaa atgacatgtt tagtgattta
     3481 gctatgcagt ttaataaaag tttgaatcca ataaaaaaat taaaaatact caaattggaa
     3541 acatgtaatt gagtttgatt aattcaaata acccctgaat attatacctt ttgacaagta
     3601 tgaaaaccaa tggaggggtg gtctagactg gttatgatac ctgccttaca cgcaggtggt
     3661 catgggttca aatcccatcc cctccatact gataacgata aatacagaaa tattgtaaat
     3721 tatcactaga taacaaatgg cactaatttc tagtaaactg atgtacattg gtgtcatatc
     3781 tgtcatcata atagctgtcg cttcatatgg attatttttt tactttcaga gagtcaatga
     3841 aaaaagtatc agggaaagca tattcgaaca ggaacttgag aggcaaataa attctaccaa
     3901 atcagtttca caacatgttg gttctgatct tcgattagtt acatctatgc ttcaggactt
     3961 ggctgattca ttatacctac agaatgaaat gttatcagga gacaaggtta gcaacttact
     4021 tgaagaaaaa ttcaaacagc ttaattctgt cacaaaagtt gatagtcttt taattacaga
     4081 taatgagggt gtcataacta ctcataaagc ttcacctaga atgaagactt ttgtgaacat
     4141 agacatttca tctaatgaat atatgaagca aacaatggac aaccttcaac cagtatactc
     4201 aaatggattt acaggaatag atggtaaata tagaatagta ataacgtatc caataacaag
     4261 tatggaagat ggtcattata ttggaactgt tgtagcgaat ttacctacta ttgagttttt
     4321 caaaaattat ggaaatgtta atgatataaa ttcacaattt ttagtcgcgc ttgataggaa
     4381 gggaaatcta ttggctgtag gagcaagtgg tgatctagta gggaagaatt tctttggtaa
     4441 cgagacacag cagtttatca attacaataa ggtgctgaat aatttaacca aatatttatt
     4501 ggctggaaat gttggacacg caatctatga ctatggaaga ggtgagagat taaatacgca
     4561 ctcgccaata ttagttggaa cgcaacttgc atatttcgtt caggtggtaa caccaactga
     4621 tcgtatatac ctgaaaatag attcggttct ttttacagag ggcataaaga tgttctcctt
     4681 gcttactgga actactgccg caattatagt tcttgtcttt ctattaagaa aatggtatag
     4741 catattgcaa gatgaagtca caaaacgaac tagcgacctg aatgaatcca attacaaatt
     4801 gatgaaagca aatgaatcgc tcaagatcaa ggatgaagcc caaaatcaat tcatt
//
LOCUS       DASPFX010000216         3020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1874570, whole genome shotgun sequence.
ACCESSION   DASPFX010000216 DASPFX010000000
VERSION     DASPFX010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1874570"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            687..1403
                     /locus_tag="VD694_04680"
     CDS             687..1403
                     /locus_tag="VD694_04680"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HXW12035.1"
                     /translation="MYKPDKDNNQVNNYTVFENREEAARRLAERIRALLYQNRKKDSI
                     NRSNTTILAIPRGGVITGDVIASILGLNLDIIVSRKVGAPDNPELAIGAVMHDGRFYA
                     NTDIMNILQIPDEYVKENLAIQMKEIQRRLWLFRHSQEYNLAGKTIILVDDGIATGAS
                     IFVAIQWIKEQNPKSLIVAVPVAPRDAIQKLRDIAGVDQVVVLETPQPFGAVGAFYED
                     FNQVSDDEVLRVMDRYQIGQ"
     gene            1641..2078
                     /locus_tag="VD694_04685"
     CDS             1641..2078
                     /locus_tag="VD694_04685"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12036.1"
                     /translation="MTITVNDMMTRELETIEESSSIQDAARKMRDTNVSSLVVVDSEG
                     KPHGIVTERDIVRKACVNDISTNRVTTREIMSPKLITIGPDSSAPTAIDMMLRNNIRH
                     LLVVDKYDTEKPIGMITPLDLRDEEFTDQGLIDAIEELSMYYK"
     gene            complement(2391..>3020)
                     /locus_tag="VD694_04690"
     CDS             complement(2391..>3020)
                     /locus_tag="VD694_04690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12037.1"
                     /translation="LVGLITSSHIMQSGMSTSDRIGRKSVGIEGKTTRLDLKVSGIMD
                     TDNLSVSKVDDTLRSVIDLMLNTNSTYTIVKSFDEIQGIITYRDVIALLGERVEEEIS
                     TFIVGLPDDPFDAELSKSKFSNLVRLLRRASPEIEEARCHIKLRDIQGERKRYEVAVN
                     IITPYRRHTYTNIGWDLAKMFDQMSDSMKKQLAHRKSRRVRDSARHFTE"
BASE COUNT          950 a          555 c          595 g          920 t
ORIGIN      
        1 acataacacc tttttttctt ctatcatcaa gtttgatgaa acaatgagag atcggatttg
       61 cgggcccgct cacgcaatat ctcttgcgat atttgtgcag aggtaactaa ttctgctata
      121 tcgttagttg cataatctaa ccagttttga tacgtcatac aagagcttca agagtgttcg
      181 acttagcgat ctaaactagt gatgctacgc agatctcgcc gttcctttcc gatattttac
      241 cacgcaattg attaatggac tctatcattt tcaactgagt gcttgcaata gattactgta
      301 gctaaaggcc atcatttatg aatgcggtac tctcgattgt ttaaaaatca aataagaaaa
      361 attaagatca agatactcat cttgatcagc gatttctgga ccgagtctag acttcagtag
      421 atacctgtta tgcattgcgt atccctacgg tagttataat gtcagaatgt taataccaat
      481 ttacattctc tcgtactact aaaattgagc tatagaattg taagtgcagt gcactgcaaa
      541 catgatactg atatacgagg aagtatgctg gttaaaatag aaccgaaacc ataattcatg
      601 tcatataaat tgcaatagta atcagtaaca ttgaagtttt ggatataaga tatatttagc
      661 cgaaattgat caaatgatca cctgctttgt ataaaccgga taaagacaac aatcaagtta
      721 ataattacac agtctttgag aacagagagg aggccgctag aagactagct gaaagaattc
      781 gcgctttgct gtatcagaat cggaagaagg atagtatcaa tagatctaat acaactatcc
      841 tggcaatacc taggggaggc gtgatcacag gtgatgtgat agcctctatt ctcggattaa
      901 atttagacat aattgtttcg agaaaggttg gtgctcctga caatcctgag ctggcgatag
      961 gcgccgtgat gcacgacgga aggttctatg caaatacaga tattatgaat atcttgcaaa
     1021 ttccagatga atacgttaag gaaaatttgg caattcagat gaaagaaata caacgacgtc
     1081 tttggttgtt caggcattca caagaatata atcttgctgg aaaaacgata attttggttg
     1141 atgatggcat tgccacaggt gcatccattt tcgtcgcaat tcaatggata aaggaacaaa
     1201 atcccaaatc actgattgtg gcagtcccag ttgcacctag agatgcaatt caaaaattaa
     1261 gggatattgc aggagtcgat caagttgtag tcttagaaac accacaacca tttggagcgg
     1321 tcggggcatt ctacgaggat tttaatcaag taagtgatga tgaagtgcta agagttatgg
     1381 acagatatca aataggacaa tgaagttata ttcctgtata atgtcatacc ggcagtgatc
     1441 gttgtttaca tcagcaacct tgatggcagg ttcaggcgta gaaaaggaga cggctaataa
     1501 atcaactttc tcttattgag tcttcggatt acccacgtaa tttataactc ataacataat
     1561 gtgtaattca tattgaatgg tcaatcgaaa taccgttcta ggccgtcata tttatagcat
     1621 gatgtcagtt ttataattct atgactatca ccgttaatga tatgatgaca agagaactcg
     1681 aaactattga agaatcctct tctatccagg atgccgcaag aaagatgaga gatacgaacg
     1741 tgagttcatt agtagttgtc gacagtgaag ggaaaccaca tggtatagtt actgaacgtg
     1801 acatagttag gaaggcatgc gttaacgaca taagcactaa tagagtaaca actagagaaa
     1861 taatgtctcc taagctgatt actattggcc ctgattcatc agcaccgact gcaattgata
     1921 tgatgcttcg aaataatata agacatttgc tggttgtcga caaatatgac acagaaaaac
     1981 caataggcat gatcacgcca cttgacctaa gggatgaaga atttacagat caagggttaa
     2041 tagacgcaat tgaagaattg tcaatgtact acaagtaaaa tcaatggatt ctgcctgcag
     2101 ctgcagtaaa ggtagttcac tattaaattg atagcaccat gtgttacagg taatgctctt
     2161 cagcagcttt atgctttctt ttctggagaa cactagtcta aaagtacgaa gggacgataa
     2221 agcatatcaa tatcctgaat tacacgtagt ggtacttagt tcaagtattt ccttttccaa
     2281 acaggaaaag aaagtggaga gaatagttgg caaaattgat gatcatccta tttattttct
     2341 aattattcgg tcgatcttaa taaattgaaa tagtgtgctc agtctaccta ctattctgtg
     2401 aaatgcctgg cagaatccct cactcggcga gattttctat gagctaattg tttcttcatg
     2461 ctatcgctca tttggtcgaa catttttgca agatcccatc caatatttgt ataagtatgt
     2521 cgcctatacg gtgtaattat gtttacagct acttcgtacc ttttcctctc gccttggatg
     2581 tctcttaatt ttatgtgaca cctagcttct tcaatttccg gagatgctcg tcttaataat
     2641 ctgacaagat ttgagaactt ggacttcgaa agttcagcat cgaatgggtc atctggcaat
     2701 cctactatga acgtcgagat ttcttcttct acacgttcgc caagtaatgc aatgacgtct
     2761 ctgtatgtta ttataccttg gatttcatca aatgacttta cgattgtgta ggttgaatta
     2821 gtgtttaaca tcagatctat aaccgagcgc aaggtgtcgt caacttttga tactgataaa
     2881 ttatcggtat ccatgattcc actcacctta aggtcaagcc tagtagtttt accctcaatc
     2941 ccaactgatt ttcgtcctat tctgtcagag gtactcatac cgctttgcat tatatggctt
     3001 gatgtgatca gtcctaccaa
//
LOCUS       DASPFX010000217         3971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_295342, whole genome shotgun sequence.
ACCESSION   DASPFX010000217 DASPFX010000000
VERSION     DASPFX010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3971
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295342"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(53..328)
                     /locus_tag="VD694_04695"
     CDS             complement(53..328)
                     /locus_tag="VD694_04695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12038.1"
                     /translation="MGAVFRPKDFGGRDNRKVVENAVKDFSPDTKDSVIKLLNSWEGK
                     KSASELRKILEQNKSEELLRVIAGDATLSKDEQIRLRNMSRESLTFD"
     gene            complement(457..1011)
                     /locus_tag="VD694_04700"
     CDS             complement(457..1011)
                     /locus_tag="VD694_04700"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HXW12039.1"
                     /translation="MPEISFAMVQKRFHAMCESCNLLMSFHSVKGNSWKVRNTERYKC
                     NNCHSVQTFPRYGNIHRIAETRTGRCSEWSMLFGAMLNSMSIKTRIVHDYLDHCWNES
                     LINGKWIHVDSTLDYPISFDHPYYYEQNWGKKYRYVLAFSSNILEDVTTRYTQQWDIV
                     QQRRKNSPKSVEEYAAHYSKIYEI"
     gene            1514..2083
                     /locus_tag="VD694_04705"
     CDS             1514..2083
                     /locus_tag="VD694_04705"
                     /inference="COORDINATES: protein motif:HMM:NF013798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macro domain-containing protein"
                     /protein_id="HXW12040.1"
                     /translation="MVAIVVDQIHLDNNKTLRAVYGDITERDVDVIVNAANTYLKHGG
                     GVAAAIVRKGGKIIQEESDKIGFVPVGSSVITTAGRLSCKAVIHTVGPRMGEGNEVTK
                     LRAAIRNSLELASDRKLKSISLPAISSGIFGFPKDKCVEILVKEAKNFLVKNNITSLE
                     IVEFCSIDNETVDYFKREFANTKELLNCL"
     gene            2705..3004
                     /locus_tag="VD694_04710"
     CDS             2705..3004
                     /locus_tag="VD694_04710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12041.1"
                     /translation="MTLCEADSSFASQPGQIAKSPESVRQSLRSFIDLKGKLDLKVKR
                     VLQASDLALVISEWSFSGSGFVGNPVSMTAKSADVLRYQADGTWQFVIDNPWGIG"
     gene            complement(3085..3891)
                     /locus_tag="VD694_04715"
     CDS             complement(3085..3891)
                     /locus_tag="VD694_04715"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HXW12042.1"
                     /translation="MLRIALVQLHLQNNKAKAIEHMLKILGKIGSSESDIVCLPELWY
                     TKKVTNFETEFDKIIDVAKEYNMTIIPGAFVERRNNNSHNSTSALQISSPVIANDGVI
                     AGRQLKLHPFGPQRKVVKAGTKVELFESANFRFGIGICYDIVFPEVARALLKNGADIL
                     FFPSKIRNEGIKPWHMYVQVRALENRIPIAAPNVCDDRNSNGIYRGKSIFVDFDYDYK
                     TDIALPKLRVGSAVNDQILIVDVDLNSSRKLRKKRFSIQLTTLQRALGGS"
BASE COUNT         1163 a          779 c          713 g         1316 t
ORIGIN      
        1 ttttcctcta aatcctctcc attttgattg gcattcatgt tctgtatttg gattaatcaa
       61 atgttagaga ttctctggac atatttctta atcttatttg ttcatccttt gaaagagtgg
      121 catcccctgc gataactctc aataattctt cggatttatt ctgttccagg atttttctca
      181 gctcgctagc agatttcttc ccttcccagg aatttagtaa tttaatgacg ctatccttgg
      241 tatctgggct aaagtccttt actgcatttt ctacgacctt ccggttatct ctaccaccga
      301 agtctttggg tctaaatacg gcacccatga tatattataa aattcattga taataaggtt
      361 atttgatatt ctttatgaaa ccattcttct cttgttccta agcaatgagg gcctgaatta
      421 caaagtggcc tttattcgaa gagcatagat gttaaatcat atttcgtata ttttagaata
      481 gtgcgctgca tattcttcta cagatttagg gctgttcttt cttctttgct gaactatgtc
      541 ccattgttgg gtataccttg tagtaacgtc ctccaggata ttggacgaaa acgccagcac
      601 atatctgtat tttttgcccc aattctgttc gtaataatat ggatggtcaa aagaaattgg
      661 atagtccaag gtagaatcaa catgaatcca ttttccattt attagtgatt cattccaaca
      721 atgatcaaga taatcatgaa ctattctggt cttaatagac atggagttta gcatagcacc
      781 aaagagcatt gaccattcac tacatcttcc ggtccgagtt tctgctattc tatgaatgtt
      841 accatacctg gggaatgttt gtactgagtg acaattgtta cacttatacc tctctgtatt
      901 tcgcactttc catgaatttc ccttaaccga atgaaagctc atcaataaat tgcaactttc
      961 acacattgca tgaaatcttt tttgaaccat tgcaaaactg atttcaggca tcctttatct
     1021 tcaatttcca ttcttgtttt cctgacaatc acctcaggaa tcaatgttct aatatattct
     1081 aaaatatctt tatttacata ttgttcagat atccttttgt atagcacgaa agaatcgcag
     1141 attgcgctag aaatcaacgc gttatgactg gaaaatatcc tcttaaacat gagatcatgt
     1201 agacccaaac tgttatgata tttgctcatg ctgatccata ttatatattg tagtccagag
     1261 ttcaattcgg aggttatcaa aacaaggcgt cccgatatag gcagatcata agaacatgct
     1321 tagctaacta ggtaaacgag acgccatcct agagggaatt cttaacaatg tgaggcttgg
     1381 ctcaacgact ttttgataca atacagtatt gtacggagtc ccgctggatt atgcaccagg
     1441 attgactcat tcttacccac cgattatggt aattaaagtt aaatctacag aatcttaaac
     1501 ccctcctaca tacatggttg caattgtagt agatcaaatc catctggata acaataaaac
     1561 cttgagagct gtttacggcg acattacaga aagggatgta gatgtcattg ttaacgctgc
     1621 aaatacttac ctcaaacacg gaggaggtgt agcggctgca attgtgagaa aaggtgggaa
     1681 aattatacag gaagaaagcg ataagatagg ttttgtgcct gttggctctt ctgtaattac
     1741 tacagccgga agattatcat gcaaagcagt tattcacaca gttgggccaa gaatgggtga
     1801 aggaaatgaa gttacaaaat taagagcagc aattagaaat agtttagaac ttgcttcaga
     1861 caggaaattg aagagtattt cattgcctgc tattagttct ggtatttttg gatttcctaa
     1921 agataaatgt gtggagatat tggtaaaaga ggctaaaaat tttcttgtta agaataatat
     1981 tacttctctt gaaatagtag agttctgttc aattgacaat gagactgtag actactttaa
     2041 aagggaattt gcaaatacga aggagttgtt aaattgccta taaacttaac cttaacgccg
     2101 aggttaagag ggatcttatc aaatttagtt tggaataata gtagttctag tggaggtcat
     2161 agcaggattc tattgtactt agttactccc actctttggc aatatcattc cactatgaac
     2221 gatatggcat cttttcctct ttcttctttc actctaaact caattggata aaacatattt
     2281 tccgtagcat caactcctcc atctgcctat agctctctac caatttcctc taccctccgc
     2341 ctcttaactt caaagtttga tgcattagga ttttgtatgc aataagtgat gaggtcatag
     2401 agttcttctt ctaagtaggc atccaatctc ttatttcacg ttcctatcac tatcatcccg
     2461 ttcttttaat tatatagcac ccgaatctgt gtcttcctcg aagtaagggg acagatgcta
     2521 tacttggtac ttacgataat tagtataacc agcattttgt aacacctttt cgactacccg
     2581 tactctattt ttcgtgacaa acttaagagc aacaatcaca aaaccaatgt ttgtctaaaa
     2641 agatgacacc tgaagaagtg ctcaattcag tagttgaagg tctcaactca acctagattc
     2701 cctcatgacc ctctgtgagg ctgattcgtc ttttgcatca cagccaggac aaattgcaaa
     2761 gagtccggaa tctgtacgcc aaagtctgcg tagtttcatt gacctgaagg gcaagttgga
     2821 tctaaaagta aagagggtac ttcaagcaag cgatcttgca cttgtaatta gtgaatggtc
     2881 attcagtgga agtggatttg ttggtaatcc tgttagtatg actgccaaat ctgcggacgt
     2941 tctgcgttat caggccgatg gaacttggca gtttgtcata gataacccct gggggatagg
     3001 ctaataagag agatacctgc ctagaaggat aaataactac ctcataaata aaacaaaacc
     3061 ggtagctgat tacgtcttgg acatctagct gcccccaagc gctctttgta atgtcgtcaa
     3121 ttgtattgaa aatcttttct tgcgtaattt tctggaactg ttcaagtcta cgtccactat
     3181 aaggatctga tcatttactg ctgagccgac tctaagtttt ggaagagcaa tatccgtctt
     3241 atagtcataa tcaaaatcaa cgaaaatgct ttttccccta tagattccat tgctatttct
     3301 atcatcacaa acatttggtg cagctattgg tatcctgttt tctagagctc ttacctgtac
     3361 atacatatgc caaggtttta taccctcatt tcttattttt gaagggaaaa agagtatgtc
     3421 tgcaccattc tttaacaacg ctctagctac ctccggaaaa acgatatcgt agcatatccc
     3481 gattccaaac ctgaaatttg cagattcaaa tagctctact ttagtgcctg cttttacaac
     3541 tttgcgctgc gggccaaacg gatgaagttt caattgtcga cctgctataa ctccgtcgtt
     3601 tgcaattaca ggagaagaga tctgtagagc actagtagaa ttgtggctgt tattgtttct
     3661 tctttctaca aaagctcctg gaattatggt catgttgtac tcttttgcaa catcaattat
     3721 tttgtcgaat tcggtttcaa aatttgtgac tttttttgta taccacaatt ctggcaaaca
     3781 tactatatct gattcagatg atccaatctt gcctagtatt ttgagcatat gttctatagc
     3841 cttggcttta ttattttgta ggtgcagctg gacgagcgca attcttagca catcaaatac
     3901 tattagctct tattcataga gggattagta aacgatgcta ttagaacatc aatattaatc
     3961 gaaactcata a
//
LOCUS       DASPFX010000218         3652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1684461, whole genome shotgun sequence.
ACCESSION   DASPFX010000218 DASPFX010000000
VERSION     DASPFX010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3652
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1684461"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..1178
                     /locus_tag="VD694_04720"
     CDS             234..1178
                     /locus_tag="VD694_04720"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12043.1"
                     /translation="MGHFAFIALLFVVFIFLSNSTIEAISSSLSGFNFAEKVSPDNTS
                     QIPIVQPEGVEVDSEGNVYVNDIESNSIIKFSKNGSYILSWGSTGSDDGQFNHPHGNE
                     IDQEGNMYITDQGNARVQKFTSDGKFITKWGAHGTGDGQFTHPHGVAVDSHGNVFVSD
                     RDNANIQKFTSNGTFITKWGSEGSEDGQFIQPWDVAVDSNDLVYVPDYGNNRIQVFTN
                     NGTFVTKWGSEGEGDGQLNQPAVIAFDTNGHLFITDSGNHRVQVFDKNSTFITKWGSE
                     GSEDGQFSKPESIDVDRFGHVYVADTSNNNVQLFIPNN"
     gene            1486..1764
                     /locus_tag="VD694_04725"
     CDS             1486..1764
                     /locus_tag="VD694_04725"
                     /inference="COORDINATES: protein motif:HMM:NF023174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3303 family protein"
                     /protein_id="HXW12044.1"
                     /translation="MAATAFLVFYRFKTMSKEESERAKGEWQNLKNGLPAGIELVGEY
                     IHAWGTEYNGFLLFESDSADSFLDWWSKFKDTIRWYVEQTHTIAARRR"
     gene            1950..2408
                     /locus_tag="VD694_04730"
     CDS             1950..2408
                     /locus_tag="VD694_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12045.1"
                     /translation="MLTYNTRNISFPSIGATLVFTALMISSFQPQGAEAQSVTGDITR
                     SSGGEPFGGEKIGTLNIDSTGRRTNVSADLNASPGEGNVFEGWLVDAGGSEYQLSLGQ
                     FRNGTLDFSQYMVNPYTYKNFEITEEPAEDPDPNAADSVAGFELQNPFGQ"
     gene            2831..>3652
                     /locus_tag="VD694_04735"
     CDS             2831..>3652
                     /locus_tag="VD694_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylglycerol kinase family protein"
                     /protein_id="HXW12046.1"
                     /translation="MRCTDNNNPQEINPGSVNKKRNRTDTLSSAPIQLRHQRKKKKHA
                     STALVVNPTSAGGSTGKVWDTQFTEIKKIFDQDPEIVFTEKSGDGTSLTRDLLKRGYQ
                     RIVAIGGDGTINEVANGFFMSQENNKEKIRKTNIINPHIFRGIRATKSQDREKFPPSP
                     VLAPINQEAVMGLLPSGTRNVLAKSLDFPEDIIQCCSNFIVGKSKKIDVISATVSPPK
                     GTEDSDKTSKPVTRIFLNAAELGVAAEIIDRSKKVRNKVKNRLVSTVTSLAVTLPY"
BASE COUNT         1213 a          641 c          740 g         1058 t
ORIGIN      
        1 tccaatgaaa ctgattattc gcacaactat aaacatgcat agggctttat ttgcgttgta
       61 ttcattttta tgacgtgaaa attaggagga aaaaagaacg ctccattaaa tagtcttata
      121 atcttaccat tgttagaatg tgctaggcta tgactcatac ctcaaattct gggctaccag
      181 aaatgatgta taggttaagt taataaagtt gcatatacaa gtcgttgttc tatatggggc
      241 actttgcatt tattgctctg ctctttgttg tatttatctt cctgtccaat agtacaatag
      301 aagcaatttc ttcatcgtta tctggtttta attttgcaga aaaagtttct cctgataata
      361 catctcaaat cccgattgtt caacctgaag gagttgaagt tgattcagaa gggaatgtat
      421 atgtaaatga tattgagtct aacagtataa tcaaattttc caaaaatggt agttatattt
      481 tgagttgggg ttcaacaggt tcagacgatg gacagtttaa ccatccacat ggtaatgaga
      541 tcgaccaaga gggtaatatg tatattaccg accaaggaaa tgctcgagtt caaaaattta
      601 ctagtgacgg gaaattcatt accaaatggg gtgctcacgg aactggagac gggcaattta
      661 ctcatccgca tggtgtagct gttgactctc acggaaacgt ctttgtaagc gatagagata
      721 atgcaaacat acagaaattc actagtaatg gtacttttat aacaaaatgg ggcagcgagg
      781 gtagtgaaga tgggcaattt attcaaccat gggatgttgc agtagattca aatgaccttg
      841 tatatgtccc agattacgga aacaacagaa ttcaggtctt tacaaataac ggtacttttg
      901 taacaaaatg gggtagtgaa ggagaaggag atggccagtt aaatcagcct gcagtaatag
      961 cattcgacac aaatggtcac ctctttataa cagattcagg taatcatcgc gttcaagtat
     1021 ttgacaaaaa tagtactttt ataacaaaat ggggtagtga aggtagcgag gatggacaat
     1081 tttccaagcc tgagagtatt gatgttgatc gttttggaca tgtgtatgtt gcagatacat
     1141 caaacaataa tgttcaattg tttattccta ataattaaaa gtcagtcaat accatgtccc
     1201 ttgctaaaat ttccttttac tgagtactag agtatctatc cggaaaagtg acagggaatc
     1261 ttctacggct caccactatg aatcaatttc tagcataata atattgacga taatatcata
     1321 ttgtgttatc tacctattaa ggaatatgtc caattttcaa tacttctcaa tcatcagaga
     1381 atggtaaggc attttagtca gccgacggtt gaatgaaaaa aggggccaat aaaaaattgg
     1441 aaataatcta actcttttat actacgttgc tactattcac acataatggc agcaacagca
     1501 tttttggtat tttacagatt caagactatg agtaaggaag agtcagaaag ggctaaaggg
     1561 gagtggcaga acctaaaaaa tggattacct gcgggtattg agcttgtagg cgagtatatt
     1621 catgcatggg ggactgaata caatggcttt ttgctatttg agtctgatag cgccgattcc
     1681 tttttagact ggtggtcaaa gttcaaagat actatcagat ggtacgtaga gcaaacacat
     1741 acaatagcag caagaagaag atagtagcat tgacgaccta gcaacattat tcttacgcgt
     1801 taaaaaacaa gaataggatg tgctagtact actactactg ctgccttttt ttaatcccgt
     1861 aagtcctgac tagcattctc cgtgaaagta acgaggaaca atgtgtatcg aggttcgtta
     1921 tatttttata gtttgttggc actaaggata tgttgacata taatacacgg aatatttctt
     1981 ttccttctat aggagcaact ctggtcttca cggcactaat gatttcttca tttcaacctc
     2041 aaggtgctga ggcgcaaagt gtaaccggtg atattacgag atcctcgggc ggagagccat
     2101 ttggaggaga gaaaatagga acccttaaca ttgattcaac tggtagaaga actaacgtca
     2161 gtgcagactt aaatgcttct cccggcgagg gtaacgtgtt tgaaggctgg cttgtagatg
     2221 ctggagggtc agagtatcaa ctgagtttag gacagttcag aaatggtaca ttagatttta
     2281 gccaatatat ggtaaatccc tatacataca agaacttcga aataacagaa gaaccagcgg
     2341 aagacccaga tcctaatgca gcagattctg tagcaggatt tgaacttcaa aatccatttg
     2401 gtcagtagta atctggcgag gaatcgtgac aacagaagat atcaattatc ttcctcccac
     2461 aaaccaatta ccgttaccaa ctaactcatt cattttagtg atcgcaccac tattacaata
     2521 taattggctt aggtagaatc taggaagtag taaacattag catttatatt ttaaattgtt
     2581 ttactgcaca agacttttgt ttttcttttc aagtcaactc tcatacgcta acaagagcct
     2641 cctggaaagt cacgtcgata aaaatatata ttttctttag actccaaaag agcatgaagc
     2701 tcaactgata aagcagccat gtatattagt atcagcatgt gtgcatatga accatatatc
     2761 ttgtcaatat tcccaatcca acaatggcgt atggttaaga ggaatattag ttcccgatga
     2821 gtgatgattg gtgagatgta cggacaataa taatcctcaa gaaattaatc ctggttcagt
     2881 caataaaaaa agaaatagaa ctgacacatt gagctcagct cctattcaat taagacacca
     2941 aagaaagaaa aaaaaacacg caagcaccgc actggttgtt aaccctactt ctgcgggtgg
     3001 ctcaactggg aaagtttggg atactcagtt caccgaaatc aaaaaaatat tcgatcagga
     3061 tcctgaaatt gttttcactg aaaaatctgg tgatggaaca tctctgacgc gtgatttgct
     3121 aaagaggggc tatcaaagga tagttgcaat tggtggggac ggaaccataa atgaagttgc
     3181 aaatggcttt tttatgtccc aagaaaataa caaagaaaaa ataagaaaaa caaatataat
     3241 aaatcctcac atttttcgtg gcataagagc tactaaaagt caagaccgag aaaaattccc
     3301 cccatcccct gtattagctc ctattaatca agaagccgtt atgggattac ttccatcagg
     3361 tacgagaaat gtgctagcta aatctctaga ttttccagaa gatattattc aatgctgtag
     3421 caattttatt gttggtaaat caaaaaagat agatgtaata agtgctacag tgtctcctcc
     3481 taagggcacc gaagattcgg acaagacctc caagcctgtg acacggatat ttctcaatgc
     3541 tgctgagcta ggagtagcgg cggaaatcat cgatagatca aaaaaggtta gaaataaggt
     3601 caagaaccgt ctcgtttcta cggttacgag cctggctgta actctacctt at
//
LOCUS       DASPFX010000219         3495 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1155267, whole genome shotgun sequence.
ACCESSION   DASPFX010000219 DASPFX010000000
VERSION     DASPFX010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3495
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1155267"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(141..836)
                     /locus_tag="VD694_04740"
     CDS             complement(141..836)
                     /locus_tag="VD694_04740"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HXW12047.1"
                     /translation="MSGLGLGYWKEVIAVLRSIIPVYDKVNKSISLGQDDKYRELGMM
                     HEIHAGNLILDAGSGFGNMSSKALEILNGNARIVLHDPIREMLNHAQEKKSQRLNLSC
                     GVFENMPFRESSIDAVLCGYSLRDSFSLVEAISEVHRVLKNDGKFIIVDIGKPDNILL
                     RSFVTFYLKYVLGIIAYSVSGKSGLRFKTLYGTFLRWPKNSVLNDLLLDKFSRVKFTK
                     KMFGGAIIVVAYK"
     gene            1035..1622
                     /locus_tag="VD694_04745"
     CDS             1035..1622
                     /locus_tag="VD694_04745"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HXW12048.1"
                     /translation="MHSNQVTLDSMKDVHNQLCSVKRQNITTPIPQAPQKSIPSAQPS
                     LSNTPSQSQATNSPSTQQSTTVAPSPGGQTTISLTGNGTSYTKIEGPIDPEFKSKRQV
                     TGTFQGIKVWGPVDAPGQLGIWGTEVTVDFDICVADGACIEACPVNVYEWLDTPGHPA
                     SEKKPFMIREKDCIFCMACENVCPPQCVKIFQKGQ"
     gene            1836..3239
                     /locus_tag="VD694_04750"
     CDS             1836..3239
                     /locus_tag="VD694_04750"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase family protein"
                     /protein_id="HXW12049.1"
                     /translation="MSDETCPLVTIQLPIYNEKYVATRLINAVCSMDFPKERMEIQVL
                     DDSDDETSGIIQALVDKFKKDGFNISSYHRANRTGYKAGALKEGLNFAKGEFIAIFDA
                     DFIPQTDFLKKALCYFEDSKIGLVQGRWGHINEKYSILTKAQAVSLDFHFFIEQKAKS
                     LTHLFMNFNGTAGIWRTLCIKDAGGWHTSTLVEDLDLSFRAQMKGWKCIFDEDLVVNA
                     ELPIQMNAAKRQQFRWAKGSVQVAKKLLIMLLSHRTLPIDTKIQIFIQLTKHIINPLF
                     LIQFLIFPILLLMNYQIYDTAMAPALGIVAYLLLGPVTYLIMIRKIWRENWRTKALQY
                     LFMIFYASGISINNSVAIFDALVGKRNEFLRTPKFGIMEKNQDWRNNKYALPFTKTTL
                     LEIFFSAYGCVTIAISVLSGNPIFVPLIALQTIGFFYVAYLSIVQSRNNKNATNMYLR
                     SSTELNLQDVTANDPVT"
     gene            complement(3282..>3495)
                     /locus_tag="VD694_04755"
     CDS             complement(3282..>3495)
                     /locus_tag="VD694_04755"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12050.1"
                     /translation="VARLAATPEDMNRANDMKKKPWLQDKRWRKELNLFLERKEKCEL
                     DAFFKYGFKYLADTYLPNKLREAGVI"
BASE COUNT         1123 a          671 c          641 g         1060 t
ORIGIN      
        1 tatagttcaa cacaaattaa aaatgaaatg tctctataaa tagaaaggta gagaattatc
       61 tggtttttga atagctaaca tttacttttt ctcaatgaaa ctaactttga attatctaat
      121 gcaaatgtgg caaatgtggg ttatttgtat gccaccacta ttattgctcc tccaaacatt
      181 ttttttgtaa atttgactct ggaaaattta tcgagtagga gatcgttcag gacagaattc
      241 tttggccatc gcaagaacgt tccatacaac gttttgaatc tcaaaccact cttaccagaa
      301 acagagtacg caattattcc caagacgtac ttcagataaa atgttacgaa ggatctaagc
      361 agaatgttgt caggcttgcc aatgtccaca attatgaatt taccatcatt tttgagaact
      421 cgatgtactt cggagatagc ctcgactagc gaaaaggaat cacgcagaga atatccacac
      481 aagacagcat ctattgatga ttccctaaac ggcatattct caaatacccc acatgagagg
      541 ttaagccttt gacttttttt ctcttgagca tggtttagca tctcgcgtat tggatcatgt
      601 aaaactatcc tcgcgtttcc gtttagaatc tccaaagctt ttgatgacat atttccaaat
      661 cctgaacccg catctagaat caagttccct gcatggattt catgcatcat acccaattca
      721 cggtatttat catcctggcc tagcgaaatg ctcttgttaa ctttatcata aactgggatt
      781 atacttctta ataccgctat gacttctttc caatagccaa gacccaatcc agacaattaa
      841 cataggtttg aaaaatgaat ggttattttt tcattttgga taaaattgac caatctaagt
      901 tatgccattt ggcattgcgg tttatcacaa atggcaatta taaaagaggt tcacaaaatt
      961 gataagggac tgctatttat cgaatactgt ctgctaatat ggaatacata tgcgaatctt
     1021 gtggtaccct attaatgcat agtaatcagg taacgctgga tagtatgaag gatgttcata
     1081 atcagctttg ttccgttaag aggcaaaaca taacaacgcc cattccccaa gcgccccaaa
     1141 aatctatacc aagtgcacaa ccttctcttt ctaatacgcc atctcagtct caagcaacta
     1201 attctccatc aactcaacaa tcaactacag ttgcaccatc tccaggtgga caaactacta
     1261 tatctctaac agggaatgga acaagctata ccaagattga aggtccaatc gatcctgaat
     1321 tcaaatcaaa gcgccaggtg acaggaacat tccaaggaat taaggtttgg ggtccagtcg
     1381 acgcgccagg gcaactaggt atatggggaa cagaagttac agtggatttt gatatttgtg
     1441 tcgctgatgg tgcatgtatt gaggcctgtc ccgtaaatgt ctatgaatgg ctagataccc
     1501 caggacatcc tgcatcggag aaaaagccct tcatgataag agaaaaagat tgcattttct
     1561 gtatggcgtg cgaaaatgta tgtcctccac agtgcgtaaa aatattccag aagggccagt
     1621 agtgtcgaca ggctttactg tgaacctata aatatttact tgtacatttt tacaataggt
     1681 agtgatagaa gataatatca gaattcagcg gatttttgta ctatattttg atggcaattg
     1741 cttgggtaat gactgtgtat actttgaatt ttaattattt gagttacaag tctactagga
     1801 atacacttac tcacaagatc agaagtaaaa taaatttgtc tgatgaaacc tgcccgctgg
     1861 taacaattca actaccaatc tataacgaaa aatacgtggc tacgcgccta atcaatgctg
     1921 tatgcagtat ggattttcca aaagagagaa tggaaataca ggtgcttgat gattcagacg
     1981 atgaaacctc tggtattatc caagcccttg ttgacaaatt taaaaaagat ggatttaaca
     2041 tctcatctta ccacagggct aacagaacag ggtataaagc tggagctcta aaagagggcc
     2101 tgaattttgc gaaaggagaa ttcattgcca tatttgatgc tgattttatt cctcaaaccg
     2161 atttcctgaa gaaagctcta tgctatttcg aagattcaaa aatcggccta gttcagggga
     2221 gatggggtca tattaatgaa aaatattcaa tcttgacaaa ggctcaagcc gtatcattgg
     2281 attttcattt ctttatagaa caaaaggcaa agagtcttac acacctcttt atgaatttta
     2341 atggtactgc aggaatatgg agaacattat gcataaagga tgcaggtggc tggcatacaa
     2401 gtactttggt ggaggatttg gatctgagct tccgtgccca gatgaagggt tggaaatgca
     2461 tttttgatga ggatttggtt gtaaatgctg aacttcccat acagatgaat gctgcaaagc
     2521 gtcagcaatt cagatgggcg aagggttcgg tacaggttgc aaagaaactt ttaataatgt
     2581 tactttcgca cagaacactt cctatagata ccaaaatcca aatattcatt caattaacca
     2641 agcacatcat aaatcctctt tttctcatac aattcctaat tttccctatt ctactattga
     2701 tgaattatca gatttatgat actgctatgg ctcccgcgct tggaattgta gcatatctct
     2761 tattaggacc agttacatat ttgataatga ttagaaaaat atggcgcgag aattggagaa
     2821 caaaggcact acagtatcta ttcatgatat tttatgctag cggaatatca attaacaatt
     2881 ctgtagcaat atttgacgca ttggtaggaa aaagaaatga atttctaaga accccaaaat
     2941 ttggaataat ggaaaagaat caagattggc gcaataacaa atacgcttta ccatttacaa
     3001 aaacaacatt attagaaatt ttttttagtg cttatggttg cgttacaata gccatatcag
     3061 tgttatctgg aaatccaata tttgttcccc ttattgcatt gcaaacaata ggattcttct
     3121 atgtggctta cttgagcatc gtccaatcca gaaataacaa gaacgcgacc aacatgtatc
     3181 taagatcatc aactgaactt aacttacaag atgtaacagc caatgatccg gtgacatgac
     3241 atttttactt tctgagtcaa attccaaatc atcagattag gctagatgac tccggcctct
     3301 cttaatttat ttggtaaata tgtatcagcc aaatacttga atccgtattt gaaaaatgca
     3361 tccaactcgc atttctcttt tcgttcaaga aataggttca attcctttct ccatcgttta
     3421 tcctggagcc atggtttttt cttcatgtcg ttagcccggt tcatatcttc aggagtggca
     3481 gcaagccggg ctacc
//
LOCUS       DASPFX010000220         2141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_872303, whole genome shotgun sequence.
ACCESSION   DASPFX010000220 DASPFX010000000
VERSION     DASPFX010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872303"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VD694_04760"
     CDS             complement(<1..466)
                     /locus_tag="VD694_04760"
                     /inference="COORDINATES: protein motif:HMM:NF024922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HXW12051.1"
                     /translation="MERWLYNQDRIISNILPKDGTVNYYGKILTLKEVNQYLDLLLQN
                     ILWQNDEAVIFGKHIITKRKTAWYGNSDYLYTYSNTTKQALAWTRELSDLKQIVEKKV
                     ETKFNSCLLNLYHDGNEGVGWHSDDEKSLGKNAIIASLSFGAERKFSFKHKQT"
     gene            complement(703..1458)
                     /locus_tag="VD694_04765"
     CDS             complement(703..1458)
                     /locus_tag="VD694_04765"
                     /inference="COORDINATES: protein motif:HMM:NF021385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HXW12052.1"
                     /translation="MRKIEIRKPLNTNITNVIVEKISDIDWETVTNEINNKGYALVPR
                     FLSVQDCKDLINEYDNSDLYRKTVTMEKHHFGLGQYKYFKYPLPDLIQIIRREIYPKL
                     APIANIWMKVLNLERQFPDNFDELQRLCHENKQTKPTALILKYGKGGHNTLHQDLYGD
                     IFFPFQLIFFLNEPDDDYTGGEFVLTQQIPRAQSKAIVLRPRRGDMLTITTNFRPIKG
                     SNGYYRAQMRQGVSEIHNGERYTMGIIFHDALS"
     gene            complement(1439..1789)
                     /locus_tag="VD694_04770"
     CDS             complement(1439..1789)
                     /locus_tag="VD694_04770"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HXW12053.1"
                     /translation="MNKSLVIRKTIKNEDVYELLQKIPAGKVTTYGDLAKALGNPSAS
                     RIIGRILGQNPNPIKVPCHRVVMSDGKLGGYAYGTAKKRGLLEKEGLSFTNGIVSDFT
                     KVRISLSSNEKNRD"
     gene            1885..>2141
                     /locus_tag="VD694_04775"
     CDS             1885..>2141
                     /locus_tag="VD694_04775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12054.1"
                     /translation="MAHTLIIRGFNDQVHEKLGEIANQRGVSINSIVKDAVDMWLKKK
                     ESEVPRKHHLVIYSDDDSIMRLLKSMDRLAKEGDLFRCFFGP"
BASE COUNT          617 a          394 c          339 g          791 t
ORIGIN      
        1 tagtttgctt gtgcttaaat gaaaattttc gttcagctcc aaaactcaat gaagcgatga
       61 tagcattctt tcctaatgat ttttcatcat cactatgcca tccgacacct tcatttccat
      121 catgatacaa attcagcaaa caggagttga attttgtttc tacttttttt tctacaattt
      181 gtttaagatc cgatagttct ctagtccatg ctaatgcctg ttttgttgta tttgaatagg
      241 tatacaaata atcagagtta ccataccatg cagtttttct tttggtgatg atatgcttgc
      301 caaaaatgac ggcttcatcg ttttgccata aaatgttttg caacaacaaa tcaagatatt
      361 ggtttacttc tttaagtgtc aatatcttgc cataataatt tacagtacca tctttaggaa
      421 gaatattgct tattatcctg tcttgattgt ataaccatct ttccattttt tgtactcctt
      481 atttatgcag tgcccgcaaa gtcgataacc atgcaataga gcttcttgtt ccgatagaaa
      541 aaatacacga ttttcttttt ttcattcttt tatccgattt acaattcagt ctgtcgtata
      601 ttcaagccgt atgcttcctc caaatcaaat ttcatgttgt attattcgta tctttagttc
      661 tctgtcacta atctcgctat gcaatatcat acatatatgc aattagctta gggcatcatg
      721 aaagataatt cccatagtgt atcgttctcc attgtgtatt tcgcttacac cttgtctcat
      781 ttgtgcacga taatatccgt tgctaccttt tataggcctg aaatttgttg tgatcgtcag
      841 catatctcct ctgcgaggtc ttaagacaat ggcttttgat tgtgctcttg ggatttgctg
      901 cgttaaaaca aattctcccc ccgtataatc atcatcaggt tcattcagaa agaaaatcaa
      961 ttgaaaagga aaaaaaatat ctccgtatag gtcttgatgt aatgtattat gtcctccctt
     1021 gccatatttt aaaataaggg cagtaggctt tgtctgttta ttttcatggc aaagtctttg
     1081 aagttcatca aaattgtccg gaaactgtct ttctaagttt aacactttca tccatatatt
     1141 tgcaattggt gctaactttg ggtaaatctc tctcctgatg atttgaatta gatctggtaa
     1201 tgggtatttg aaatatttat attgacctaa tccgaaatga tgcttttcca tagtaacggt
     1261 ctttcgatag agatcggagt tgtcatattc gttgataaga tctttacaat cttgaactga
     1321 caagaatcga ggcaccaatg catatccctt attatttatt tcgtttgtta ccgtctccca
     1381 atcaatatca gaaattttct ccactataac attagttata tttgtattca atggttttct
     1441 aatctctatt tttctcattt gaagaaagag agatcctaac cttcgtaaaa tcactaacga
     1501 ttccatttgt aaaggacaag ccttcttttt caagtaatcc tctctttttg gcagtcccat
     1561 acgcgtatcc gcctaatttg ccatctgaca ttactactct gtgacaaggc accttaattg
     1621 gatttggatt ctgaccgagt attctaccta ttatccttga tgctgaagga ttaccaagtg
     1681 cttttgcaag atccccataa gtggtaacct ttcctgcagg tattttttgt agcagttcat
     1741 agacgtcttc attttttata gtctttcgaa taacgagact tttattcata ttatatgata
     1801 gcatgattgc attatataaa cttatatttg ttttgctatc ttgatatcag catctataaa
     1861 tatgtgcaca agtatattat agtaatggcg catactctta tcattagagg atttaatgat
     1921 caagttcacg agaaattggg agaaatagct aatcaaagag gagtctcgat aaattcaata
     1981 gtaaaagatg ctgtagatat gtggcttaaa aaaaaagaat cagaagtacc tcggaaacat
     2041 catctagtaa tttattcaga cgatgattct atcatgcgac tgctaaaatc catggataga
     2101 cttgccaaag aaggcgattt atttagatgt ttttttggac c
//
LOCUS       DASPFX010000221         2244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1588631, whole genome shotgun sequence.
ACCESSION   DASPFX010000221 DASPFX010000000
VERSION     DASPFX010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1588631"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VD694_04780"
     CDS             <1..192
                     /locus_tag="VD694_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW12055.1"
                     /translation="KIMYKAFLSYAQLREYLSVLIENNLLEYLEGSQTYKTTEKGLNF
                     LKMHNEIDELLQTSSKQGK"
     gene            345..656
                     /locus_tag="VD694_04785"
     CDS             345..656
                     /locus_tag="VD694_04785"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW12056.1"
                     /translation="MITTQVSRLQTNSNRLKSFFKTFTKKQISDTSKNTEVIVALSVE
                     GREKVDQMINKAIESGGRESREPQDHGWMYGRSFEDIDGHLWEVIYMDESAMKNDGKP
                     S"
     gene            922..1995
                     /locus_tag="VD694_04790"
     CDS             922..1995
                     /locus_tag="VD694_04790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12057.1"
                     /translation="MKKDTDFAADSIQIMNGSTTLNAALGIISEGEKTFDCCIDSKGL
                     SFLVQNEQLWNAIVKLKNRGASLRFIIQITHENIYKCNLLMQRGEVFHNDGAKGNFMI
                     VDGVRYSYYIIEEDTHQETHDVIESFHIKVKPFVDTQQHLFDNLCSRSIPAKEKIREI
                     WRENKEDFVNIVQTAPQIQDITTELIEASKHEILMLFSTTNSFYRAEHFGLLNYLWKA
                     SRRGVTVKLLIQGAVDDNGRLKEIIHKTVMRKNSSVKIQYIPKPLVTTITNLVVDQAV
                     SLAIEVNDDTKKTLEESIGVAIYSNNELKVSSSLTLFETLWIRSEFEKQNQIKQAYFQ
                     IFKGFELKDESYIRRWSFDNKIK"
BASE COUNT          814 a          364 c          402 g          664 t
ORIGIN      
        1 aaaattatgt acaaagcttt tcttagctat gcacaattga gagaatatct ttctgttctc
       61 attgagaaca atctactgga gtatttagaa ggctctcaaa catacaagac cacagagaaa
      121 ggcttgaact tcctaaaaat gcataatgaa atagacgaac ttttacagac ctcttcaaag
      181 cagggaaagt agtccttttc ctatattttt ctagatgtaa tagtaagcaa atattatgac
      241 tgcaattaat gcagtcatac acaatatatc tagcgcagaa taattacatc tatttggcta
      301 tcctcggtct aacgttttat cattactatt aatggggtca cttattgata acgacccagg
      361 tttctagact tcaaactaat agtaatagat tgaaatcttt ttttaaaact ttcactaaaa
      421 agcagatttc tgacacttca aaaaatacag aggtaatagt agcattatct gttgaaggca
      481 gagaaaaggt agatcagatg ataaataagg ctatagaatc tggaggcagg gaatctagag
      541 aaccacaaga tcatggatgg atgtacggac gtagttttga ggacattgac ggacatcttt
      601 gggaagtaat atacatggac gaaagtgcga tgaaaaatga tggaaaacct tcatgataag
      661 tattcttaaa agttaaaata attatcagaa agatgcttta gaataatacc aaagaacacc
      721 ttttcctata aacccttgaa tatacaagtt taaagtagta tagtcaaact gcaaaagtag
      781 gtgctaacat atttgcatat ccttttccat cgtccaagcc cagttttaat agtaaaagtt
      841 ttgagctgca gagtggttgc tactattgcc tcttctactg atttgacttt aaatatttca
      901 gtatcttgta agtagctaat agtgaaaaaa gatactgact ttgctgctga tagtatccaa
      961 ataatgaatg gatcaacgac tttaaatgct gctttgggaa taatttcaga gggagaaaag
     1021 acttttgact gctgtataga ctcaaaggga ctgtcttttc tagtgcagaa cgaacagcta
     1081 tggaatgcaa tagtcaaact aaaaaataga ggagcaagtt taaggtttat catccaaatc
     1141 acccacgaaa atatctacaa gtgcaattta ctcatgcaac ggggtgaggt ctttcataac
     1201 gatggagcaa aaggaaattt tatgatagta gacggagtac gatattcata ttatatcata
     1261 gaagaagata ctcatcagga aactcatgat gtaatagagt catttcatat taaggttaaa
     1321 ccatttgtag atacacaaca acaccttttt gataatctct gcagcagatc tattcctgcg
     1381 aaagagaaga tcagagaaat atggcgagaa aataaagaag attttgtcaa tattgttcaa
     1441 accgcgcctc aaatccaaga tatcactaca gagctcattg aagcctcaaa gcacgaaata
     1501 ctcatgttat tctcaacaac taattcgttc tatcgagcag agcattttgg attgttaaac
     1561 tatttatgga aggcatcgcg gcgaggagtg acagttaaat tgctaatcca aggagcagtt
     1621 gacgataatg gccgactaaa ggaaatcata cacaagacag ttatgcgaaa aaactcttca
     1681 gtaaagatcc aatacattcc gaagccatta gtaaccacaa ttacaaatct tgtagtagac
     1741 caagcagttt ctctagcaat agaagttaat gatgatacaa agaaaacctt agaggaatct
     1801 attggagttg ctatttattc aaataacgaa ttaaaagttt catcatctct tactctgttt
     1861 gaaactttat ggatacgatc agaatttgag aagcaaaatc aaataaaaca agcatacttt
     1921 cagatattca agggttttga actaaaagat gagtcttata ttcgtcgatg gtcatttgac
     1981 aacaagatca aataaagaaa taaggtaaat accataagct atttggacta tacttaaatg
     2041 tgttataaca aaccatatca tatggtatta caaccgggaa tttggctgaa aacttaaatg
     2101 attatttgtg tatttctgca tccctggatg acaggaactg tggtggtaac atagaaagga
     2161 gtcactactc caaacgttca cattttttct cgttttacta taggcctcct tgatagtata
     2221 cagtttctag aattttatct taat
//
LOCUS       DASPFX010000222         4258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_19543, whole genome shotgun sequence.
ACCESSION   DASPFX010000222 DASPFX010000000
VERSION     DASPFX010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4258
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19543"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(531..770)
                     /locus_tag="VD694_04795"
     CDS             complement(531..770)
                     /locus_tag="VD694_04795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12058.1"
                     /translation="MISMVEVINWDDIIKKEARGLDDYDLGEVQHQNEQFVETKRGVV
                     DKDKFFLPKDKVVKFDGNKVWFNVTKDEAKAYKRD"
     gene            904..1248
                     /locus_tag="VD694_04800"
     CDS             904..1248
                     /locus_tag="VD694_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12059.1"
                     /translation="MASLELDNPAVIFVIGLVISTIIIFVVTKLFRGRTNIGKAFITA
                     LIGTLVWVVTYYIFGHGLLATVVGGIAWLFALRSIYGISWTKSAIIAVIVWIVSYFVT
                     VALDLPTATGPL"
     gene            complement(1900..2283)
                     /locus_tag="VD694_04805"
     CDS             complement(1900..2283)
                     /locus_tag="VD694_04805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12060.1"
                     /translation="MTVCEKCSKHEEYHSCSAYNQHLCIDCFNTVHFGINATRTGNSL
                     VYSKCVFCGEIYGSNVKVHVCDKCAIILTWISSMNYLAAVNRVSQLIRTSKFDSKLKN
                     ENYCKANFGTHATQVIMDAVDSVRI"
     gene            complement(2858..3007)
                     /locus_tag="VD694_04810"
     CDS             complement(2858..3007)
                     /locus_tag="VD694_04810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12061.1"
                     /translation="MTSRKRIDNVAKLLELLDKHIKETNCNHNSKDLFLEYKKLTLVK
                     EAINS"
     gene            complement(3270..3452)
                     /locus_tag="VD694_04815"
     CDS             complement(3270..3452)
                     /locus_tag="VD694_04815"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HXW12062.1"
                     /translation="MYTISCRDVGRDCDCIVQGETEEEIMKNAAEHAVKDHGYKKEEI
                     MTSEMKEKIKSYIRKS"
     gene            3596..3958
                     /locus_tag="VD694_04820"
     CDS             3596..3958
                     /locus_tag="VD694_04820"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HXW12063.1"
                     /translation="MKVGIIGSGEVGRKLADGFIELGHQVKLGSRDPKQSKIIDWINK
                     HDKEKASSGTFAETASFGELVVLATLWEGTAEAIQLSNSENLAEKIVIDVTNPLDFSK
                     GMPPSLALGHTDSGGEAV"
     gene            3962..4246
                     /locus_tag="VD694_04825"
     CDS             3962..4246
                     /locus_tag="VD694_04825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12064.1"
                     /translation="MLPNSKVVKAFNIVGNPHMVHPDFPGGKPTMFICGNDEASKKIV
                     TDEILSKFGWETIDIGAIEGSRTLEPLALLWILQYFRSGNGNHAFKLLLK"
BASE COUNT         1355 a          724 c          738 g         1441 t
ORIGIN      
        1 ttttttgaaa ctgaacgtct agaagattac tatttaatgg ttatatccat aatagaaact
       61 taaaattcag tgaccagaaa atcggagaaa ctcagtcagt gtaagcataa aagaacactt
      121 catctttttg acgagatggc agttgttgct taatatgtat gagaaatgaa gggtgacttt
      181 gaaaaatggt tgagattggt ttagaaaagt atttcggttg ttgttgttac tataaattca
      241 atttcaataa aaaagctgga aatatgcttt gtgcgttcaa agttaggcag tcaagatctt
      301 gcattagtta tatgattgct tattatcgga taacatcagc aaatgagtaa attatttatg
      361 taaaatcaat taagtctcca tctcgaaaac aagaatctcg attagtccac aggtggaggg
      421 agtgtatgtt ttcaagttct tccatctcta caatcctaag gttccaattt gttatccaac
      481 ggttaggtta agaaggtaaa aagacgttct agaaaaagat gatcttgcgt ctagtcacgt
      541 ttgtaggcct ttgcttcatc tttagtaaca ttgaaccaaa ctttgtttcc gtcgaacttt
      601 actaccttgt cttttggcag aaaaaacttg tccttatcga caactcctct ttttgtttca
      661 acaaattgtt cattttgatg ttgaacttcg cctaaatcgt aatcatccag tcctcttgct
      721 tcctttttta tgatatcatc ccagtttatt acttctacca tagatatcat atagcaacat
      781 ttcatataag gattgaaagt ctatacaagt tactggacga tgaaaaatga gatttggttc
      841 cgtctctgta aataatgagg aattctatac aactatttat cttttgcatg ataatctaga
      901 tcaatggcat cgttagaatt agataatcca gccgtcattt tcgtaatagg tctagtgatt
      961 tcaacgatta taattttcgt tgtaaccaag ttattcagag gaagaacaaa cataggtaaa
     1021 gcattcataa cagctctaat aggtacgcta gtttgggttg ttacatatta tatctttggt
     1081 catggattat tggcaacagt ggttggaggt atagcttggt tatttgcact aagaagcata
     1141 tatggtatta gctggactaa atcagcaatt attgctgtta ttgtatggat tgtctcatat
     1201 ttcgtaacag ttgcccttga tttacccact gcgactggtc cgctatagat tcttcatcca
     1261 tctatatgca actataaata tctgcggttc attatattgt aaattgtatt gcgtataacg
     1321 aacgtccaac ttaatatttc atcgaatgat tattttagat aaagagttat ttttcagtaa
     1381 gtgatcaact agtaaacaaa ttttaatctc aacattggag agaaaggaag atcccatata
     1441 atagtaccaa tttgtggtgt gatcgtattt tatattttac cattctctct tcggtagtgt
     1501 agttggtctt aattctacag gaataaagat tgataaagat ctatgcggcc tctagaataa
     1561 aatatctaat tccagtaaca taaaatatga ggccattaat ggcgattcga attcaataga
     1621 ctattcgcaa ttcaaactag aaaataccat tattttcatt tctgcattac ctgactctgg
     1681 tgaaatatta tcttacggca taataaatca cttgaaaaat ataaaacgaa attgcgcaac
     1741 gtaggtattg cgttaatggg aagtccagcc ttcagacgag acaaatctaa ttgggggtgg
     1801 gggaaattca tagctgactc tggattgaaa atattaaagt gtagcctagt ctagcaaatc
     1861 cgccaaccta ccacttctcc gtttattaga attttgttac tatattctta cactgtctac
     1921 cgcgtccata ataacttgag tagcgtgtgt gccaaaattt gccttacaat agttctcatt
     1981 ctttagcttt gagtcaaact tgcttgtcct tatcaactgt gaaaccctat ttactgcagc
     2041 tagataattc atagaagata tccaagtcag tatgatagca cacttatcac aaacatgaac
     2101 cttaacatta ctcccatata tttccccaca aaagacacat ttgctatata ctaatgagtt
     2161 acctgttctg gtcgcattaa taccaaaatg cactgtatta aagcaatcaa tacataagtg
     2221 ttgattgtat gcagaacacg agtgatactc ttcatgttta ctacattttt cacacactgt
     2281 catcgcttac aagcaccact gtgtagaagc aaatatgtag atgcaattgt tatcatgaac
     2341 taatttatac attatattat actactattg ttaataaggt aatctctcct atatctagtt
     2401 actccgcaag taaatgctag gaatgacaag tgtctaatca ttattttgat ttcaagtatt
     2461 aaataaaagc ttgcaactca ctaatattta cctattttcg ttagctccta tctttaaatt
     2521 caaacgatgt tgtaaaatat tagtaattag taaactcttc ggacgcggga tatgatcaca
     2581 aattggtctg cagcattatc ttaccagtgt tcttctagtg gtattaagaa caaactactg
     2641 ataactacaa tccctacaag cattcctatt gtacatatgt ttgattttat gtattttaat
     2701 ggtttcacat gactatttcg cctatcaagt attactatcc tattgatcat tcaagctgaa
     2761 aacttacact aaatgatgat ttcttatact caatataatt taagatgaaa aatttcaata
     2821 tccgtggcca ttctcaaaag ttcatttgtt cttacaatta agaatttatc gcctctttta
     2881 caagagttaa tttcttatat tctagaaaaa ggtcctttga attatggtta caatttgtct
     2941 ctttgatgtg tttatccaat aattctaaaa gcttggcaac attatcgatt ctttttctac
     3001 ttgtcattgg agagctaagc tatggacaat aaacttgata aaagcttgag ttattttata
     3061 aaaaggagct agatgtaata ctaatagtac taattgataa ggaactgatt ggctcggtgc
     3121 tcaacctgtc tgctgctgga cccaacagga cgccttattg gctggtaaga aacgcatgct
     3181 tgaccttcgt gtttcgtcag ctggaacata tgataggcca aatgaacaaa agagaaaatt
     3241 attgtttacg ttagtgaccc aattgcacac taggacttgc gtatgtatga tttaattttt
     3301 tccttcattt cagaagtcat tatttcttct tttttatacc cgtgatcttt gactgcatgt
     3361 tctgctgcat ttttcataat ttcttcttct gtttctcctt gaacaataca atcacaatct
     3421 ctaccgacat ctctacacga aattgtatac atgcaaaatt tcatacaaat tacgcaaatt
     3481 aaaggtttca cttattctgt ttattgtatt attgtattga ttcttgtcag cacctaattt
     3541 cttactgtga gcatcaaaat gtaaagcgta taaatcaaca ataacaaaat atgtcatgaa
     3601 agttggaata atagggtcgg gcgaagtagg gcggaaatta gctgatggtt ttattgaact
     3661 tgggcaccaa gttaaactag ggtctcgtga tccgaagcag agtaagatta ttgactggat
     3721 aaacaaacat gataaagaaa aggcatcatc aggaacattt gcagaaacgg caagttttgg
     3781 tgaacttgtt gtgttggcaa ctttgtggga gggaacagct gaggcgattc aactgtcaaa
     3841 ttccgaaaat cttgctgaga aaattgttat cgatgtaact aatccattag acttttcaaa
     3901 gggaatgcct ccaagtctgg cactggggca tactgattct gggggagagg ccgtttaaag
     3961 aatgttacct aattctaaag tggtaaaggc ttttaatatt gttggaaacc cccatatggt
     4021 acatcctgat tttcccggag gaaagcctac aatgtttatc tgtggaaatg atgaggcatc
     4081 taaaaagatt gtaaccgatg agatactctc aaagtttgga tgggaaacaa ttgacattgg
     4141 agcaatagaa ggttccagaa ctctcgaacc acttgcactg ctctggattt tgcagtactt
     4201 tagaagcggt aacggaaatc atgcatttaa attgttacta aaataagata tccgcaaa
//
LOCUS       DASPFX010000223         2474 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1980521, whole genome shotgun sequence.
ACCESSION   DASPFX010000223 DASPFX010000000
VERSION     DASPFX010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1980521"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..167)
                     /locus_tag="VD694_04830"
     CDS             complement(<1..167)
                     /locus_tag="VD694_04830"
                     /inference="COORDINATES: protein motif:HMM:NF012506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HXW12065.1"
                     /translation="MSGMRNIDARNIGLRNIVVADTRICSIDGEHGELIYRGYDILDL
                     VTHSTFEETAYL"
     gene            complement(486..2255)
                     /locus_tag="VD694_04835"
     CDS             complement(486..2255)
                     /locus_tag="VD694_04835"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HXW12066.1"
                     /translation="MSRLFARATMFFFIVSILMISQTIHSTFGQTTNSCADTSIKGVT
                     ASGSTQNFPPSNVMDNNFNTVWSYYGKGTWIQFDLGSSKDICSVNIAWYKGDVRQSNF
                     VISTSTDGTSYKNVLSSKSTGNTLSFDKYTIPSTSARYVKIIINGNTQNDYASIFEAK
                     LQTTSSTQPEQTQCSAATTSNVKASGSQTGFPPSNVKDNNLQTRWSNNGKGSWIQLDL
                     GSNKNICEVNIAWYKGNERQNNFIISTSKDGSTFTKALEKKSSGTTLNLEKYALSNPN
                     ARYIKITVNGNTQNDYASITEANIKTQTVVNTPPTPPTPPSNGGSTGDNTAGGDGVKM
                     IYPTLTGAETWFFNPTNPNDGQFDRNGAQISKNSDGTSWNLKPGTTRMLVFTKSSGLP
                     SDEVRSSLPTYDYSRLAQTGYFYKPSDWKNIEITIYVKVLSTSGGGDEISLVSRSVRH
                     SNNVQEGCGGSSYHNNIDFTNGKFKFKKEMWHVNYDIKSYSGITIGSTMNKWIGFKGV
                     VYNLPDGSVKLESYVDKNNNNNWEKATEFVDKGNWGDAMTHCKAKTSGAAITWGSPMV
                     IFKSNGVTYDFKNFSVRQIVPPT"
BASE COUNT          691 a          498 c          415 g          870 t
ORIGIN      
        1 agatatgcag tttcttcaaa agttgaatga gttacaagat ctaaaatatc atacccccga
       61 taaatcaatt caccatgctc accgtcgatt gaacatatcc tggtatcggc tactacgata
      121 tttctcaagc ctatgtttct agcatctata tttctcatgc cgctcatcaa aatcactcat
      181 tgacatatat cacgtcaaat ttatatatta aattaatccc gatttctcaa cctcaagagt
      241 cagtatagac gtttatcgca ttatacctgt actttgaggc tttttgttgc ccctaaacaa
      301 actaatcaag ttcttccccc cggtttgtga tatcggtttc ctaatttcaa aaagtaactc
      361 ccaaatttcc tataaatgtg tctattgcta tcatctaacg tcagccgtgc taaaaataaa
      421 gtttaccata aaaagatata ctgtcaagtc tactgtttct gacctgttaa gttagacttg
      481 ctgtttcatg ttggaggaac gatttgtctc acagagaagt tcttaaagtc atacgttact
      541 ccgttagact tgaatattac catgggtgag ccccatgtaa ttgccgcccc acttgttttg
      601 gctttgcagt gggtcatagc atctccccag ttacctttgt cgacaaattc agttgctttt
      661 tcccagttat tgttattgtt tttatcaaca tatgattcca atttgacact tccgtcaggc
      721 aagttgtaca caacgccttt aaatccaatc cacttattca tggttgaacc aattgtaatg
      781 ccagagtacg attttatatc atagtttaca tgccacatct cttttttgaa tttgaacttt
      841 ccatttgtaa aatcaatatt gttgtgataa gatgagccac cacatccttc ttgtacgtta
      901 ttactatgtc ttacacttct agacaccagc gaaatttcat cgccacctcc ggatgtagat
      961 agtactttaa catagattgt tatctctatg ttcttccagt cagaaggctt gtaaaagtat
     1021 cctgtttgtg ccaatcttga ataatcataa gttggtagac ttgatctaac ttcatcggac
     1081 ggaagccccg aactctttgt aaagaccaac attctggtgg tgcccggctt gagattccaa
     1141 ctagtgccat ccgaattttt agagatctgc gcaccgtttc tgtcaaattg gccgtcgttt
     1201 gggtttgtag gattgaagaa ccatgtctca gctcctgtca atgtagggta gatcatcttg
     1261 acgccatctc cgcctgcagt attatctcct gtacttcctc catttgatgg tggtgtcggc
     1321 ggtgtcggcg gagtattaac tacggtttgt gtctttatgt ttgcttcggt tatacttgca
     1381 taatcatttt gtgtgttacc atttaccgta atcttaatat accgagcatt tgggttggat
     1441 aaagcatatt tttcaagatt tagtgtagtt ccactactct ttttctcaag tgccttggta
     1501 aatgtagaac catctttcga agtcgagata ataaaattat tctgtctttc attacccttg
     1561 taccatgcaa tatttacctc gcaaatattc ttgttcgatc ctaaatcaag ctggatccaa
     1621 gagccctttc cgttgttaga ccatcttgtc tgaagattat tgtccttaac atttgaaggt
     1681 ggaaaacctg tttgacttcc tgacgctttg acgttactag tagttgcagc agaacattga
     1741 gtttgctcgg gttgagtcga agatgttgtc tgtaactttg cctcaaatat actcgcgtaa
     1801 tcattttgtg tgttaccatt aataataatc tttacatatc gtgcagatgt cgacggtatt
     1861 gtatacttat caaatgatag cgtgttaccg gtactcttag atgataatac gtttttgtat
     1921 gaagtaccat cagtagatgt ggatatgaca aaattacttt gccttacatc gcccttgtac
     1981 catgcaatat ttacactgca aatatcttta ctcgatccta gatcaaattg tatccaagta
     2041 cctttaccat aatacgacca tacagtattg aaattattat ccattacatt gcttggcgga
     2101 aaattctgtg tacttccact tgcagtaaca cctttgatac ttgtgtcagc gcatgaattt
     2161 gtagtctgac caaaagtcga gtggatagtc tgtgagatca ttaagatgga tactataaag
     2221 aagaacatgg ttgcccttgc gaataatcta gacaattttt attgttcgac ctcaatccta
     2281 ttctttgaag ctatactgtc ataatcagaa ttctctaatt ctaattctac agtcgtcaag
     2341 taaatatgat aaattaaatt gtaatgatga atcatcgcaa aattatttta taacatatta
     2401 tttatgcaag actaagattt ttacctatat tacgttatga gtcagttaaa cataatagtt
     2461 tttaaaaaat atct
//
LOCUS       DASPFX010000224         3991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_755928, whole genome shotgun sequence.
ACCESSION   DASPFX010000224 DASPFX010000000
VERSION     DASPFX010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_755928"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            428..1264
                     /locus_tag="VD694_04840"
     CDS             428..1264
                     /locus_tag="VD694_04840"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HXW12067.1"
                     /translation="MTKLTYTALVLAAILSISVSVIFANPVNAQEQNGYITVLNGKNE
                     VPSHPDVTATGISGFIVNSGNSKIWYQIEAEGLKGVTQAHIHSGKAGENGPVVATLFK
                     GSKDTVNGALVQGSITADKLEGPLKGKSISDLVNLIDKSSAYVNVHTQSFPDGEIRGQ
                     ISKGTIQIDVNTKRAHISNSDVNIDIDLKNVNINEITVKNQNQLESTQTTENTLSSDQ
                     TTDNTFGANQTTDNTFGANQSVEDQLGSSQSSDSMSGMNVTGSVMPETNDSMTKPSTD
                     GN"
     gene            1451..1639
                     /locus_tag="VD694_04845"
     CDS             1451..1639
                     /locus_tag="VD694_04845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12068.1"
                     /translation="MSTISNQNLLILAIVLIVIGAVLFYAPIPYPAGTIGNILIVIGI
                     IVLVIWIILMIVRAIRHV"
     gene            complement(1865..2281)
                     /locus_tag="VD694_04850"
     CDS             complement(1865..2281)
                     /locus_tag="VD694_04850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HXW12069.1"
                     /translation="MSTVTHGKNRPIRVLVSKLGLDGHDRGALVICRALRDSGMEVIY
                     SGLFCTPEQVAKIAIDEDVDVVAMSLLNGAHLTLFPKVATILKERGVSDILLIGGGVI
                     PGKDKKQLEEKGVKGNFGPGTPLEAIIEFIHSNIKK"
     gene            2398..3303
                     /gene="meaB"
                     /locus_tag="VD694_04855"
     CDS             2398..3303
                     /gene="meaB"
                     /locus_tag="VD694_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0015819 - lysine transport [Evidence IEA];
                     GO_process: GO:0015822 - ornithine transport [Evidence
                     IEA];
                     GO_process: GO:1903826 - L-arginine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HXW12070.1"
                     /translation="MSELVSGILKGDKRSISRAISIVDNNEAEALKIIQAIFKKTKNA
                     RTIGFTGSAGAGKSTLIGRMAAQFHSLGYKVAIVAVDPSSPITGGALLGDRVRMMSIS
                     DEIYVRSLASRGAEGGISRSLRNVVRILDAAGYNLILIESVGAGQLEIEISKAVNITV
                     VIFNPQTGDSIQAIKAGLTEIGDVYVINKSDLEGASILYNIIADLVGDNKKLVFKCSA
                     KMNKGIKELIKSLVKMLDDEKYQAREKSILENELKDMILNVIKEKSIEKIMKSQEYGK
                     LVNKILKKEVEPYSAALNFANKIIV"
     gene            3316..>3991
                     /locus_tag="VD694_04860"
     CDS             3316..>3991
                     /locus_tag="VD694_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HXW12071.1"
                     /translation="MSKQEVKKIKTDSGIPVKRIFSSKDLTSMTDGDEEAGKFPYTRG
                     LYPEMYRERLWTMRQYSGFGSAEETNKRFRFLLDHGQTGLSLAFDLPTQTGRDSDNDY
                     SQGEVGRTGVAISSIDNMMTCFQNIPLDKVSTSMTINSTASTLLSLYIVVAESQGVSS
                     NNLRGTTQNDILKEYIARNTYIYPPRQSMRIIGDMIQYCSKHVPQWYPISISGYHMRE
                     AGSNAIQ"
BASE COUNT         1386 a          697 c          755 g         1153 t
ORIGIN      
        1 gtgactattg ttcctatccc atgatcaacc aaccatttga attggtcaaa tgataaaggc
       61 aatccgcttc ctgcaagatg attgtttatg acccagctaa aatttgttgg acgtgaactg
      121 aatttgctat atagccatcg gtagacatca ccaattagag tcatttttac gataaatagt
      181 actgaagtag ttgtaaattt aagtcttcat taccatgtga aaacccggta gtttaagatg
      241 aggcaaaatc caaatgaatt gatgaaaact ctcttattag tcaggcagta aattctctac
      301 gtcccaattc tgactgggat ctaatacact tcatgatata ttacggttta ataagtaaag
      361 acagtttatt tattccagac aatcgccttt gtagttatta ataaattatt ttgtcttttt
      421 ttaagtaatg acaaaattaa cttacacagc actggttctc gcggcaatac tgtcaatctc
      481 agtttcagta atattcgcaa atccagtaaa tgcacaagaa cagaatggtt acataaccgt
      541 cctaaatggc aaaaacgaag ttccatcaca tcctgatgta acggcaacag gaattagtgg
      601 atttattgta aacagtggca attcaaagat ttggtaccag attgaagcag aaggtcttaa
      661 aggagtaacg caagctcata ttcattcagg taaggcgggt gaaaatggtc ctgttgttgc
      721 aacattattc aaaggtagta aagatacggt aaacggggca ttagttcaag gcagtataac
      781 agcagacaaa ttagaaggac ctctaaaagg taaatcgata tcagatcttg tgaatctcat
      841 tgacaaatca tctgcatatg tgaatgtaca tacccaatca tttccagatg gagaaatcag
      901 aggacaaata agtaaaggta caattcagat agatgtgaat accaaaagag cacatattag
      961 caatagcgat gttaatatcg acatagacct taaaaatgtg aacataaatg aaataactgt
     1021 caaaaatcaa aatcaactcg aatctacaca aactactgaa aatacactaa gctcagacca
     1081 aacaactgac aatacatttg gtgcaaatca aacaactgac aatacatttg gtgcaaatca
     1141 atcagtagaa gatcaactgg gttcgtctca atcaagtgac agtatgtctg gtatgaatgt
     1201 aactggtagc gtcatgcccg aaaccaatga ttcaatgaca aagccctcaa ctgacggcaa
     1261 ctaggaatca aatccagtag attaactatc tacattattt ttatttccct ttttatttac
     1321 agtcattcat ctcattctag ttagttcggg aaatgttatt gtgcactagt aatttactat
     1381 tcggatattg catgttaata acgccaaatt cattagagta ataaactttg tttgcctatt
     1441 atcttggtat atgtcaacaa tttctaatca gaacttacta attttagcca tagttctcat
     1501 tgtaatagga gcagtcttgt tttatgcacc tattccatat cccgcaggta ctattggaaa
     1561 catcttaatc gttataggaa taattgtatt agtgatttgg atcatcttaa tgattgttag
     1621 agcaataaga catgtttagt tatttttact ccagtttcaa atggaaaccg gcgtaaaaaa
     1681 atcaccagcg ataattgtga atctaaaatc atgaatcaca tagttgttcc acacagaaag
     1741 taaagttaag ttaatatcaa tttcaatccg gttttgtcct tgacagacgc ttaataaatt
     1801 aggtctccgt actaaactgt aagatgttcc tatatgaaga ccatataagg aagttatgac
     1861 cctgctactt tttgatatta ctgtgaataa actctattat tgcttcaagc ggtgtaccgg
     1921 gaccaaagtt gccttttacc cctttttctt cgagttgttt cttatccttg cccggaatga
     1981 ctcctccacc aatcaataag atatcactta caccacgctc cttcaatatg gtcgctacct
     2041 taggaaacaa tgtaaggtgt gctccattta gcaaactcat tgcaacaacg tctacatctt
     2101 catcaattgc tatttttgca acttgttctg gagtacaaaa taaccctgaa taaattactt
     2161 ccataccaga atccctaagt gctctgcata ttaccaaagc tcctcgatca tgaccatcca
     2221 gacctaattt ggacacaaga actcttattg gcctattttt tccatgggta actgttgaca
     2281 tactactaaa aattacagtg gacctttaaa attttttgtc aatttgtgcc ttacatcgaa
     2341 aattgttggc aagggtataa gtaactttta ataattaact ttccagctaa atctctcgtg
     2401 tcagaattag tatcggggat attgaaagga gataagagat caatttccag ggcgatctca
     2461 atagttgaca acaatgaggc cgaggcgctc aaaataattc aagctatttt caaaaaaaca
     2521 aaaaatgcaa gaacgattgg atttaccgga tcggcaggag caggtaaaag tacgcttata
     2581 ggaagaatgg ccgcacaatt tcactctctc ggttataaag tggcgatagt agctgtagat
     2641 ccatctagcc cgataactgg cggcgcatta ttgggtgaca gggtccgtat gatgtcgata
     2701 agcgacgaaa tttacgtgag aagcttggct tcgagaggag ccgaaggagg tatttcaaga
     2761 tcgcttagaa atgtcgtaag aattttggat gctgccgggt acaatctcat attgattgaa
     2821 agtgtcggag ctggacagct tgaaattgaa atctccaaag cagtaaatat tacagtggtc
     2881 attttcaatc cgcaaacggg agatagcata caggcgataa aagctggatt gacggaaata
     2941 ggggatgttt atgttataaa taaatcagat ttggaagggg cctctatatt atataacata
     3001 attgcagatt tagttggaga taataaaaaa ttagtattca aatgttcggc gaagatgaat
     3061 aaaggaatta aagaattgat aaaatcattg gtaaaaatgt tggatgatga aaaatatcaa
     3121 gcaagagaaa aatccatact cgaaaatgaa ctaaaggata tgattttgaa cgtaattaag
     3181 gaaaaatcca ttgagaagat aatgaaaagt caagaatacg gtaaacttgt aaataaaatt
     3241 ctgaaaaagg aagtagagcc atatagcgca gctttaaatt ttgcgaataa gataattgtg
     3301 taggtgagtg aaagaatgtc aaaacaagag gtaaaaaaaa ttaaaacaga ttcaggaatt
     3361 cctgtaaaaa gaattttttc ttcaaaagat cttaccagca tgacagatgg ggatgaagaa
     3421 gcaggtaaat ttccatacac gagagggctg tatcccgaaa tgtatagaga aagactatgg
     3481 actatgcgac agtatagcgg ttttggtagt gcggaagaaa ctaacaaaag atttcgattc
     3541 ttgttagatc atggacagac tggattatca ttggcttttg atctcccaac gcaaactgga
     3601 agggattcgg acaatgatta ttcacaggga gaagtcggaa gaactggtgt agcaattagt
     3661 tctatagaca acatgatgac atgtttccaa aacataccac ttgataaggt tagtacttca
     3721 atgacgatta actctactgc atccacatta ctatccttgt acattgttgt tgcagagtca
     3781 cagggtgtat catctaacaa tctacgggga acaacacaaa atgatatcct gaaagagtac
     3841 atagcgcgca atacctatat ttatccaccc agacagtcga tgagaatcat tggcgacatg
     3901 atccagtatt gctcaaaaca cgttccacag tggtatccaa taagcatctc tgggtatcat
     3961 atgcgagaag caggctcaaa cgccattcaa g
//
LOCUS       DASPFX010000225         4013 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_114447, whole genome shotgun sequence.
ACCESSION   DASPFX010000225 DASPFX010000000
VERSION     DASPFX010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4013
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114447"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VD694_04865"
     CDS             <1..221
                     /locus_tag="VD694_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12072.1"
                     /translation="FNTREKIMEILRSLNQYLDMTILMTTHDLGGIGKRLPWVICMNK
                     TIIAEGVPSMILTKDNLLRTYGLADYND"
     gene            352..1308
                     /locus_tag="VD694_04870"
     CDS             352..1308
                     /locus_tag="VD694_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HXW12073.1"
                     /translation="MIQLLVLSIVPFHTTTLLFLELLLEPFTYEFFTNAIIVSILVGG
                     VCGLMGVYIVLRGMSYIGHGMSHAVFGGAVVSYIAGFNFYLGAAVWGFVSAYLINVIA
                     RRNKIKADAAIGVVTTAGFAIGVLLISTTRSYTRNFEALLFGNILGITDQDLAVIVLV
                     TCVSAFFIFFYQKRLLFTLFDKETAKVYGVRTDLVELFFSLILAAVVIASMSSVGVTL
                     IAAAIVAPAISARMLTNNFMKMVIASTIIGILTAFLGMYSSYFLDSASGATIVLFGTA
                     AFGVSSLYAYIRRLYQTHTHEKFIRHSHPHIHEGEHIHKHRS"
     gene            complement(1384..1905)
                     /gene="trxA"
                     /locus_tag="VD694_04875"
     CDS             complement(1384..1905)
                     /gene="trxA"
                     /locus_tag="VD694_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HXW12074.1"
                     /translation="MNTRIMRYYNNSISDRTNDHDEELERIMQRKMNEFSLQTKRNDL
                     IEGNQSAATSPITLTDQNFNEMVGKHPLLIVDFWAPWCGPCRMVSPVIVELSQELAGK
                     AVFGKLNVDENPMIASAFGIQSIPTIAIFKNGKAVDGIIGAASKSHIMSKLSTHINNN
                     SSTDINSSGSGRY"
     gene            2019..2411
                     /locus_tag="VD694_04880"
     CDS             2019..2411
                     /locus_tag="VD694_04880"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HXW12075.1"
                     /translation="MDNMRSINLFMDTDCTCKNLLECLYNLSHSDLDILVTLLRTKEP
                     LTLEIISKQIGKDKGTIFRSLQKLVSIGFCVKESRNLRNGGQYHTYRATSIDIIERAT
                     EHRLKEIQKSLSRLIKRFRGDIQQMIEQ"
     gene            2607..3905
                     /locus_tag="VD694_04885"
     CDS             2607..3905
                     /locus_tag="VD694_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12076.1"
                     /translation="MANTFRSLFGREDNDSSISLSIRHFRNRIETDPAIPLIVISLGI
                     LLTASSGSWDITNHLLNRPETFFSPPHAGLYSGVVLVLFGSLMTYRYYRRSNKISDNN
                     NRKSLPTYLRLILIGIVMLISAGPLDFAWHTAFGLDGLLSPPHAVLTMGMVLCSIGAF
                     LGLISNNNYSDKMRTKTNIKTLDNGDSYSTLELKNTSSNNTTTPSKRSSLYIIVSITA
                     IWITVSGIIHMASLPFSDTDFFKFNPNPILAGLIATLCFPFLVSFILFTSWEITKKVG
                     VLSAAGMIFIFINLITTILPNENLVPAIPFYLINVIPIIAIDALLSLPSLVMSSSSKP
                     SSSTTISISLSQTRKRIVSILAGAVLGLTFFMLYFPLITHTYNEVSTNPQPVWPSVTA
                     AIYFEMIDEMYPILVISSIAAGILGVVVSSKLIGGLYHRI"
BASE COUNT         1241 a          678 c          753 g         1341 t
ORIGIN      
        1 attttaatac ccgcgaaaag ataatggaga tcttgcgttc cttaaatcaa tacctagaca
       61 tgacaatact aatgactacc catgatctcg gcggaattgg gaaacgactc ccttgggtta
      121 tatgtatgaa taaaacaata atagcagaag gtgttccttc aatgatattg actaaggata
      181 atttattgag aacatatggt ctagcagatt ataatgatta ggatcacttc gaatagctgc
      241 accaatagta ttacatttac aattcttgtt aagagcctgt cttcaccaaa tttagctggt
      301 caaaaaagta atggagaaat acaatgagct tagaggaggg gattcaataa tttgattcaa
      361 ttattagtat tgtcgatagt gccatttcac acgacaacat tactattttt agaattactt
      421 ctggagccat ttacttacga attttttacg aatgcaataa tagtatcaat tctggtgggt
      481 ggagtttgtg gattgatggg cgtgtatata gtattgagag gaatgagtta cataggtcat
      541 gggatgtctc atgctgtatt tggcggagca gttgtaagct atattgctgg ttttaatttc
      601 tatctgggag ctgcagtctg gggttttgtt tctgcatatc ttattaatgt gatagctaga
      661 agaaacaaaa taaaggcaga tgcagcaata ggggtagtca cgactgcagg atttgcaatc
      721 ggtgtactat tgatcagtac gactagaagc tatactagga attttgaggc acttttattt
      781 ggcaatatcc tcggaataac agatcaagat ctagccgtta tcgtgctggt aacatgtgtc
      841 agcgcattct tcatattctt ctatcagaaa agattacttt ttactttatt cgataaagaa
      901 acagccaaag tatatggagt acgaacagac ttggtagagc tgttcttctc attaattctt
      961 gcagccgtag taatcgcatc gatgagtagt gttggagtaa ctttgatagc tgctgctatt
     1021 gtcgctcctg ccatttctgc caggatgctt acaaataact ttatgaaaat ggtaattgct
     1081 tcgactatta ttgggatttt gaccgcattt ctaggtatgt actctagtta tttccttgat
     1141 tctgcatcgg gcgctacaat agtattattc ggaactgcgg cgttcggtgt gagttcgcta
     1201 tatgcatata ttcgcaggtt atatcaaaca catacacacg agaaatttat cagacattcg
     1261 catccccata ttcatgaggg tgaacatata cataaacaca ggtcctgaca ttcatatatc
     1321 gtagttgcag gtcgtgccaa aaaaattaaa ggtagatgga aagtaggtgg cgaaagtaca
     1381 cacctaatat cttccagaac ctgaagagtt gatgtcagtt gaagaattgt tattgatatg
     1441 tgtggagagc ttggacataa tatgtgattt agaagcagct ccaataatcc cgtctactgc
     1501 ttttccattc ttaaatattg caatcgtagg aatactttgt atcccaaatg cgcttgctat
     1561 cattggattc tcgtctacat taagtttgcc aaataccgct tttcctgcca gttcctgaga
     1621 caattccact attacaggag agaccattct acatggtcca caccatgggg cccagaagtc
     1681 aacgattaac aaaggatgct taccaaccat ctcattgaaa ttttgatcag ttaaagtaat
     1741 gggagatgta gcggctgact gattaccttc gatcaaatca tttctttttg tctgaagaga
     1801 aaattcattc atttttcgtt gcattatcct ttctagctct tcatcatggt cattagttct
     1861 gtcacttata ctattattat aatatcgcat aattcgagta ttcacctatg aaacatactg
     1921 cgaatccgtt tattaagtat tacggttttg ccaaatatgt acaaaacctt ttattacact
     1981 tctattaata attatatgga ttataatgac gggatgtaat ggataacatg agatctatca
     2041 atctctttat ggatactgat tgtacatgta agaacttgtt agaatgtctt tataatttat
     2101 cgcattcaga tttggatata ttggttacat tgcttagaac taaagaacct cttacattgg
     2161 aaataatttc taaacagata ggaaaggaca aaggaacgat atttagatca ttacaaaagt
     2221 tggttagtat cggtttttgc gtcaaagaaa gtagaaactt aaggaatggt gggcaatatc
     2281 atacttatcg ggcaacaagt attgatataa tagaacgagc tacagaacac agactaaaag
     2341 aaattcaaaa atcgttatcc aggttaataa agagatttag aggggatatc caacaaatga
     2401 ttgaacaata agtaaaacga agtttagata tttgcaatag acgaatataa aagaatgtca
     2461 tgataatttt ctgatgatgc agagcatgga tcagagtgta tccaacattt gtgatactgg
     2521 tcttgaatct aaaccaaatt attcgaaata gatgaatata agtagtccaa attcctgaat
     2581 attattaggt acagagacga ctaacaatgg ctaatacatt tagatctcta tttggtaggg
     2641 aagacaatga ttcttccatt tcattgtcga tacgtcattt cagaaatagg attgaaacag
     2701 atcctgctat tcctctcatc gttataagtt tgggcatttt actgactgca agttcaggca
     2761 gctgggatat tactaaccat cttttgaata gacctgaaac atttttctct ccacctcatg
     2821 ctgggctata ttctggtgtc gtattggttt tatttggatc attgatgaca tatcgttatt
     2881 accgacgtag taacaagata tcagacaata ataatagaaa atctcttccg acttacttac
     2941 gattaatact cataggaatt gttatgttga tttcggctgg tcccttagat tttgcttggc
     3001 atacagcttt tggtcttgac ggtttattga gtccaccaca tgcagtgctt acaatgggaa
     3061 tggttttatg tagtattggt gccttccttg gattgatttc aaataataac tattctgata
     3121 aaatgagaac gaagaccaac ataaagacat tggataatgg agatagttat tctactcttg
     3181 aactgaaaaa cacaagttct aacaatacta caacacctag caaaagatct tcgttgtaca
     3241 taatagtgtc aattacagca atttggatta cagtttctgg cataattcat atggcttctc
     3301 ttccattttc tgatactgat tttttcaaat ttaatccaaa tccaatttta gctggattaa
     3361 ttgcgactct gtgttttcca tttcttgtgt cttttatatt attcacttca tgggaaataa
     3421 ccaaaaaggt tggtgtctta tctgctgctg gaatgatctt tatttttatc aatctaatta
     3481 cgacgatact tccaaatgaa aatctagtac ctgcgattcc gttttacttg ataaatgtca
     3541 ttcctattat agctattgac gcgttacttt cattaccatc tttagtaatg tcgtcgtcgt
     3601 caaaaccatc atcatcaaca acaatatcaa tatcactttc tcaaacacga aagaggatcg
     3661 ttagcatatt agcaggagct gtattgggac tcacgttctt tatgctatac tttcctttaa
     3721 ttactcatac atataatgaa gtttctacta atccacaacc ggtatggcca agtgtaactg
     3781 ctgcaatata ttttgagatg atcgatgaga tgtatcctat attggttatc tcatcaatag
     3841 cagcaggtat tctaggcgtt gtggtcagtt caaaactaat tggagggctt tatcatagaa
     3901 tctaacgacg ttacggcatt gaactgtatc ggctggacag tgtagcttga ttttgctgca
     3961 attgttgttc tgcatgaatt acaaactgct ttttgaattt cttgcatgta ttg
//
LOCUS       DASPFX010000226         2418 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1114448, whole genome shotgun sequence.
ACCESSION   DASPFX010000226 DASPFX010000000
VERSION     DASPFX010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1114448"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..781
                     /locus_tag="VD694_04890"
     CDS             <1..781
                     /locus_tag="VD694_04890"
                     /inference="COORDINATES: protein motif:HMM:NF013922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12077.1"
                     /translation="RIREWYGLHFPELDYLLQNFITYANIVRDAGSRENITKELLTQL
                     ELPERKIEMIQLAISKSQGGDLTQESSESLKVLASQVIMLSELRTNLSTTIENLMETL
                     APNLKNILTAIIGARLVAKAGSLMKLSQMPSSTIQIIGAEKALFRALKTGTRPPKHGL
                     LFQHPSVNSAPKWQRGKIARALSSKVAIAVRIDVYRNGELDSSLLEKLTKRIETIQKI
                     YQEPPKTKETFEDKGRFMHKRHNKPMGFKRRKMRHEKRRRH"
     gene            759..1433
                     /locus_tag="VD694_04895"
     CDS             759..1433
                     /locus_tag="VD694_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HXW12078.1"
                     /translation="MKNVDVISYVTVNGKEHIATINLLKGVTLYGEKLVTRNGNEYRT
                     WDPFRSKLAAAFIKGLNFEFTDVKNILYLGASTGTTVSHLSDIVSHSGRIFAVESSTR
                     VGRELITNVSSKRTNVIPIIEDARRPRSYFAIYDKMDLVYCDIAQPDQTSIAIDNCKI
                     YLKEQKPMLLVIKTRSIDVTMSPKSVISQEIKKLESNSFEIKQRIDLEPFDKDHAMIT
                     AIFHPK"
     gene            complement(1437..2072)
                     /gene="rnhB"
                     /locus_tag="VD694_04900"
     CDS             complement(1437..2072)
                     /gene="rnhB"
                     /locus_tag="VD694_04900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HXW12079.1"
                     /translation="MICGVDEAGRGSLLGPIIVAGISVPKKSIPELIKCGIRDSKLVS
                     PKKRQSLFGYIINIAESICICRISIEDIDFHVFRNNLNVLEAEAMAITIGNMKSDKTY
                     VDSCDVNPTRYRKTIRGFLGKHDTKLVSMHHADRLNIVVSGASIIAKVIRDSEISKIR
                     VKYGDIGSGYPSDKKTIRFVKDWYTKKNEIPPFARKSWKPAQSIASCSRHL"
     gene            2194..>2418
                     /locus_tag="VD694_04905"
     CDS             2194..>2418
                     /locus_tag="VD694_04905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12080.1"
                     /translation="MQYEISTIKEGKTRLLVPTLSLTDNVPPKNPAFFNPNAKWNRDI
                     SMLVYSIQASTKYNKTFADSICGVGPRGLRT"
BASE COUNT          829 a          454 c          441 g          694 t
ORIGIN      
        1 aaggattcgt gaatggtacg ggctacattt tcctgaatta gactatttac ttcaaaattt
       61 catcacatac gctaatatcg taagagatgc tggctctcgt gaaaatatca ccaaggaact
      121 tttgactcag cttgagcttc cagaaaggaa aatcgaaatg attcaactag cgatctcaaa
      181 gagtcaagga ggagatctta ctcaagagag ctcagagtca ctaaaagttt tggcgtctca
      241 ggtcataatg ttatccgagt tgagaactaa tctatctact acaattgaaa atctaatgga
      301 gacgcttgct ccaaatctga aaaatatcct gactgcaata ataggtgcca ggctggtggc
      361 aaaggcaggc agtttgatga aactatcaca gatgccttca agtacaattc aaattattgg
      421 tgcggaaaaa gctctgtttc gtgcgttaaa aacaggaacg agaccgccaa aacatggact
      481 tttgtttcaa catccttcag ttaactctgc tccaaaatgg cagaggggta aaattgctcg
      541 agcattgtca tcaaaagtag ctattgcagt aagaatcgat gtataccgta acggtgaatt
      601 ggacagttca ttgttagaaa aattaactaa gagaatagaa acgattcaaa agatttatca
      661 agagcctcca aagacgaagg aaacttttga agataaggga agatttatgc ataagagaca
      721 taacaagccg atgggtttca agagaagaaa gatgcgtcat gaaaaacgta gacgtcatta
      781 gttacgttac cgtgaatgga aaggaacaca tagctacaat caaccttttg aaaggagtga
      841 ctctctatgg tgaaaaactt gtaaccagaa acggtaatga atacagaaca tgggacccat
      901 ttagaagcaa actagctgct gcatttatca agggccttaa ttttgagttt actgatgtta
      961 aaaacatatt atatcttgga gcctcaacag gaactaccgt aagccacctg tctgatatag
     1021 ttagccactc aggaaggatt tttgcggttg aatcttctac cagagtcggt agagagctta
     1081 ttacaaatgt ctcatctaaa agaaccaatg tgatacccat aatagaagat gcaaggagac
     1141 cgagaagtta ttttgcaata tatgataaga tggacttggt atattgcgat atcgctcagc
     1201 ctgatcaaac aagcatagcg attgataatt gcaaaatata tctaaaggaa caaaaaccaa
     1261 tgctccttgt tattaagact agaagtattg acgttacaat gtctccaaag agcgtaatat
     1321 cccaggaaat taagaaatta gagagtaatt catttgaaat caaacaaaga atagaccttg
     1381 aaccttttga taaggatcac gcaatgataa ctgcaatttt tcatccaaaa taacaatcat
     1441 aaatgacgcg aacacgaggc tatcgattga gcaggtttcc aagatttcct tgcaaatggt
     1501 ggaatctcat tttttttagt ataccaatct ttcacaaacc ttattgtttt cttatcagat
     1561 ggatacccgc ttccaatatc accgtattta acacgaatct tgctaatttc agaatcacgt
     1621 attaccttag caataatgga agcacctgat actacaatgt ttaacctatc tgcatgatgc
     1681 attgaaacta attttgtgtc gtgcttacca agaaaacccc ggattgtttt ccgataccta
     1741 gttggattaa catcacacga atcaacatat gtcttgtcag atttcatatt ccctatagta
     1801 atagccatag cctcggcctc aagaacattg agattgttcc taaaaacatg gaaatcaatg
     1861 tcttctatac ttatcctaca aatgcaaatt gattctgcaa tgtttatgat ataaccaaaa
     1921 aggctttgtc ttttttttgg ggaaaccaat tttgaatctc tgattccaca tttgatcaat
     1981 tcgggaatgg attttttggg tacactgatt cctgctacga taattgggcc tagtaaagat
     2041 cccctgccag cttcatctac tccacaaatg atacttttat tctcagtgaa ctctgatccc
     2101 ttgaatccaa atcaagagat tgttgctatt ttattcttac cccaaaaatc atgatatatt
     2161 aggagccaaa agttacctta ctatccatca ggattgcaat atgaaatttc aacgattaaa
     2221 gaaggtaaaa cgaggcttct agtccctact ttatcactta ctgacaacgt acctccaaaa
     2281 aatcctgctt tctttaatcc aaatgcaaag tggaataggg atatttcaat gctagtttat
     2341 agtatacaag catctacaaa atacaataaa accttcgctg actcaatatg tggtgtaggc
     2401 ccaagagggt taagaact
//
LOCUS       DASPFX010000227         5429 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1594445, whole genome shotgun sequence.
ACCESSION   DASPFX010000227 DASPFX010000000
VERSION     DASPFX010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5429
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1594445"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..777)
                     /locus_tag="VD694_04910"
     CDS             complement(<1..777)
                     /locus_tag="VD694_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HXW12081.1"
                     /translation="MSIQTTVKKIQVHGNEIRYFDYDNFSTKKKETLVLLHGIGASAE
                     RWLKVIPFFCNHFRVIVPDIIGFGYSDKPTVEYNMPFFVKFLEDFLNNLGIKKTNIGG
                     SSFGGLVAVEFAIKNTAMVDKLILVSPAGTMKTSTRTLEEYILASLYPTHDNVWRAFI
                     NMAFDPRTVTEQTIEEFIDRMKLPNAKYAFMSTMLGIRNTTNLSSRLGKILSPTIIVW
                     GEQDEMIPVKYAEDYRNIPNSNLQIIPKCGHTPFTEKPEAF"
     gene            complement(954..1724)
                     /locus_tag="VD694_04915"
     CDS             complement(954..1724)
                     /locus_tag="VD694_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HXW12082.1"
                     /translation="MEEFFVFPFFVIIGLIAGILGSMIGVGGGIIISPALTFLGLTPP
                     QVASTSLFAVSSTSVSSTIAYARSNKIQYMLGIKMVLLSIPGAIIGSYLSTSIDPGYF
                     KVLLAIILIATGIYLMIRKSIIKGSSFSLESIWVKVLFFSATFVAGIMSSLFGIGGGV
                     IFVPLLIMFVGLTMHLAAPTSQFVLMITSIVGLTTHIILGNPEYLPAILLSVGAFGGA
                     QIGSRLSSKLSEQKLRLLLGITFVGIALRLILDFYHSV"
     gene            2165..3406
                     /locus_tag="VD694_04920"
     CDS             2165..3406
                     /locus_tag="VD694_04920"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HXW12083.1"
                     /translation="MQIIVLVDLEKQKQQGVHADIFRPFPLILLHTPFGLKFFDYVAK
                     TRAARAYARANTYLMPVITAIMLFFIILAIANLISNVSAREGIREIGPRANLLIPVIN
                     PFLPLTYTLVALIISVFIHEAGHGIVARVHGIKVESTGIAFVLFVPVGAFVNLDRDEL
                     TKATLKQKSAVLTAGPLNNMILAGISFAVLFATLSSLTPIASNVTSDGIELITVAKGS
                     LAEKIGLTEGSKIISIGNSEIQSQGDLTQILRSNIGNQIPIVWLDKNGVQRSNTFSIP
                     ANAAPDKPILGVTAASIDPATVLEIYKQHPLLLLQMPTLEKSMPFSDSMASKYESNLF
                     GESFPIVANTFYWLFFINFNLGLFNSLPISILDGGQLYSSLIESRSKMNKNRLNQISS
                     AVSTITILIVAMSLLLPYLPF"
     gene            3574..>5429
                     /locus_tag="VD694_04925"
     CDS             3574..>5429
                     /locus_tag="VD694_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HXW12084.1"
                     /translation="MSKGNLSDNSVDKSISTLENSGKAKQPADPIHSNHIQHAKKVDE
                     DFFKDIILKSIPKESQITNIRFEGPYVALYTLNPKFSLTELTYYLSSLSKNVKKRFVV
                     RTDPSIRLSEDETRTTVIKMLPNDVTISAVFCDDATGEVVLEVNRPESIDANMVIEIA
                     QATGWIAHTLRSPHIQSSSMNMIHSTQKNSAKERSLFLQSLGKRVFRPPLVLESNDSN
                     LNFVNQSSDKRSEITELKSKIRNKEEIALFCLGGVKQVGRSCFIVVTSESKVMLDCGI
                     NPGEPLGISAYPRLDWFNFDLDELDAVIISHAHIDHQGFLPTLFKFGYRGPVYCTEPT
                     LPLMTLLQYDSVKISKSNGTFLPYETRDVNEVIKHCITLPYGKPTDISPDITITFNNA
                     GHIMGSATVHINVFGTHNILYSGDYKYARTQLLDSAVSVYPRVETLITESTYGNSADI
                     MPDQSVVYKTFTDTINKTLSSGGKVLIPVPAVGRAQEIMLVLDKEMREGRLMEAPVFI
                     EGMISEASAIHMAYAHYLGFDVRKSVSNGINPFQSEYFTVVNGHERRQDVFNDDNPSV
                     IMATSGMLEGGPSVEYFKKIAPDKKNNIIFVSYQINGTLGRRVIDGGLMEIS"
BASE COUNT         1799 a          999 c          993 g         1638 t
ORIGIN      
        1 aaatgcttct ggtttttcag taaaaggtgt atgaccgcat tttgggataa tttgcaaatt
       61 agaattcgga atattcctgt agtcttcggc atattttact ggaatcattt catcttgttc
      121 accccaaaca ataattgttg gtgagagtat tttgccaagt ctagaggaaa gattcgtagt
      181 gtttcttatt cctagcatag tggacatgaa tgcatacttt gcatttggaa gtttcatcct
      241 gtctataaac tcctcaattg tttgttctgt aacagtacgg ggatcaaaag ccatgttgat
      301 aaatgccctc cagacattat catgtgttgg atacaacgat gccaagatat attcttctaa
      361 cgttctagtt gaagtcttca tagtcccagc tggagaaact aagattagct tgtctaccat
      421 ggcagtattc ttaattgcaa actctactgc aaccaatcct ccaaacgacg atccacctat
      481 gtttgttttt ttgataccaa gattattgag gaaatcttca agaaatttta caaagaatgg
      541 catgttatac tctacagttg gtttatcact gtagccaaat ccgattatat caggtacgat
      601 taccctgaaa tgattgcaaa aaaaaggaat cacctttaac caccgttctg cagaagctcc
      661 tatgccatgc aagagtacca aggtctcttt tttctttgta ctgaaattat cataatcaaa
      721 ataacgaatc tcattcccat gaacttgtat ttttttcact gtagtttgta tggacaataa
      781 tctgcagtct gatagatatt tctagggcca ctttattact tttatcatga agtaggtttt
      841 tgcgatgctc caagggcttc atctagtttt gttctcattt acttatccaa gctgatctga
      901 ctcaatctcg agttatctct aggacaatat ctaatgcaat taactagtgg ggatcacaca
      961 gaatgataaa agtccaggat taatctgagt gcaattccta caaaagtaat ccccagcaaa
     1021 agtctcaatt tttgttcgct caatttactg gataatctgg agcctatttg agctccacca
     1081 aaggcgccca ctgacaataa gatagcagga aggtattctg gattacctag tattatatga
     1141 gtggttaacc ctactattga tgtaatcatc agaacgaatt gagacgtagg tgcggccaaa
     1201 tgcatagtca atccaacaaa cattattaat aacggaacaa atatgacccc tcctccaatt
     1261 ccaaataaac tcgacatgat tccagcaaca aaggtagcag aaaaaaagag aacctttacc
     1321 caaatggact ccaatgaaaa ggagctccct ttgattattg attttcttat cataagataa
     1381 attcctgttg caatcaggat gattgcaagt agtactttga aataacctgg gtcaatactt
     1441 gtcgaaagat aggaacctat tattgcacct ggaattgata atagcaccat cttaattcca
     1501 agcatatatt gaatcttatt tgatctagca tatgctatgg tagaagagac gctagtggaa
     1561 gaaactgcga agaggcttgt acttgctacc tgaggtggtg tcaaaccaag aaaggttaag
     1621 gctggcgaaa taatgatccc ccctccgact ccaatcatcg accctaagat gcctgcaatc
     1681 aaaccaatta ttacaaaaaa aggaaaaacg aaaaactctt ccaaatcaaa tacctataat
     1741 ttttatacaa ttaaggtaag ttattaaatt atttgtaaat gcctgatgat aatttacggg
     1801 agattttgta tttgctagat catcatgaat taaatctaac tagctttctt taataacaga
     1861 tggaagaata cttttgcaac atctgcgaaa aatctattaa agtgccggcg atagaaaatc
     1921 atattaccga atctgaccat gttgcaaaga aaaaaatgct agaaaaacaa ttacaagaca
     1981 ataccaactt tccgaaatca ttaaaatctt cagtgggctc gtggaaaaaa gattgatact
     2041 ggtaacgatt tatgataata tgatataagt aaaaaattta atatcatatt tcaacacatg
     2101 agttaaattc atgcaatttc tttcgatact ttttgtagtt caattctgat gagttcattt
     2161 aaatatgcaa attattgtac ttgtagatct ggaaaaacaa aaacaacaag gtgttcacgc
     2221 cgatatattt cgcccatttc ctctaatatt actacatact ccttttgggc taaaattctt
     2281 tgattatgtg gcaaagacca gggccgcgag agcgtatgcc agagcaaata catacctaat
     2341 gccagtcata accgctatta tgttgttttt catcattctt gcaattgcaa acttgatatc
     2401 gaatgtttca gcccgagagg gtattaggga aataggaccc agggcaaatc ttctaatacc
     2461 tgttattaac ccgtttttgc ctcttactta taccctggtt gcattgataa taagcgtctt
     2521 catacacgaa gcagggcatg gaatcgtcgc tagagtacac ggaataaagg tagaatcaac
     2581 tggtattgct tttgtacttt ttgttccagt cggcgcattt gtcaatcttg acagggatga
     2641 actaacaaag gcaacactaa agcagaaaag tgctgtgcta actgcaggtc cattgaataa
     2701 tatgattctt gctgggatct cattcgcagt attattcgca actctatcct cgttaacgcc
     2761 gatcgcctct aacgttacct ctgatggcat tgaactaatt accgttgcaa agggatcact
     2821 tgcagagaaa attggtctca cagaaggatc taagatcatt tcaattggga actctgaaat
     2881 acaaagtcaa ggagatttaa cacaaatatt aagatcaaat atcggcaatc aaattccgat
     2941 agtatggctg gataaaaatg gggtacaaag gtccaatact ttttcaattc ctgctaacgc
     3001 cgcccctgat aaaccaattc tcggtgttac tgctgcttcg atagatcctg ctaccgtatt
     3061 ggagatatac aagcagcacc cgcttctttt gttgcagatg ccaacactag aaaaatcaat
     3121 gcctttttca gattcaatgg cgtcaaaata tgaatcgaat ttgtttggcg aatcatttcc
     3181 tatagttgca aataccttct attggctatt ctttatcaat tttaacctag gattattcaa
     3241 ttcccttcct atatcgattt tggatggggg tcaattatac agttcactca tagaaagtag
     3301 atccaaaatg aataagaacc gtctcaatca aatctcatcg gcagtatcca cgataacaat
     3361 tcttattgtg gcaatgtctc tgcttcttcc atatctgcca ttctaattac taggaattcc
     3421 aaaatatata ttaagagaga tgttcaattc ctctgtgggt acaaccggta agaactttaa
     3481 tggccttgct ataacgattt gtgataataa tagattatca ctattaaagt aagggtaatg
     3541 gaaatcagac cgagtatcta gaagaatgct aaagtgagta aagggaattt aagtgataat
     3601 tctgtagaca agagtatttc tacactagag aacagtggta aagctaagca acctgcagat
     3661 cccatacatt caaatcatat tcaacatgca aaaaaagttg atgaagattt ctttaaggat
     3721 attatactga aatcaattcc aaaagaatct caaatcacca acataagatt tgaaggaccg
     3781 tatgttgctc tttatacgtt aaatcctaaa ttctcattaa ctgaattaac atattatctt
     3841 tcctcgcttt caaaaaatgt taaaaaaaga ttcgtggtaa gaaccgatcc ctcgattagg
     3901 ttgtcagaag acgagacaag aactacggta attaagatgt taccaaatga tgttactata
     3961 tctgctgtat tttgtgatga tgctactggg gaagtagttc ttgaagtaaa tcgtcctgaa
     4021 tctattgatg caaatatggt aattgaaatt gcacaggcta caggatggat tgcccatact
     4081 ttacggtccc ctcatattca gtcaagcagt atgaacatga ttcattctac tcagaagaat
     4141 tctgcaaagg aaagaagtct tttcctacaa tcacttggta aaagagtttt cagaccacca
     4201 ttagttttgg aaagtaacga ctctaatttg aatttcgtta atcaatcgag cgacaagaga
     4261 tctgaaatca ctgaactaaa atctaagatt aggaacaagg aggaaatagc tctcttttgt
     4321 ctgggtggcg tcaaacaagt tggaagatcg tgttttatcg tagtaacttc agaaagcaag
     4381 gtaatgcttg attgtgggat aaatcctggt gaaccactag gcatttccgc ctacccacga
     4441 ttagactggt tcaatttcga tttagacgaa ttagatgcag taataataag tcacgcccac
     4501 atagatcatc agggattttt gccaacatta tttaagtttg gctacagggg gccagtatat
     4561 tgcactgaac ccacattacc tttaatgacg ctactgcagt atgattctgt aaaaatttca
     4621 aaaagcaacg gaacattttt gccatatgaa acaagagatg taaatgaggt aatcaaacac
     4681 tgtataacgt taccttatgg gaaacctaca gacatttcgc ctgatatcac gataacgttc
     4741 aacaacgctg gtcacataat gggaagtgct acagtacata ttaatgtatt tggaactcat
     4801 aacattcttt attctggaga ttacaaatat gccaggactc aattgttgga tagcgccgta
     4861 tctgtttatc ctagagtaga gacgttgata actgagagca catacggtaa ttcagctgat
     4921 ataatgccag atcaatctgt agtatacaaa acatttacag acactattaa caagacatta
     4981 tcatctggag gaaaagtatt gattccagtc cccgctgtcg gaagagccca ggaaataatg
     5041 ttggtcctcg ataaggaaat gagagaagga cgccttatgg aggcccccgt ttttattgaa
     5101 ggaatgatat ctgaagcaag tgcaatacat atggcatatg cacattacct gggatttgat
     5161 gtaagaaaat cagtatcaaa tggcataaat ccatttcaat cagaatactt tacagtagtt
     5221 aatggacatg aaagaagaca agatgttttc aatgatgata atccaagtgt tattatggca
     5281 acttctggaa tgttggaggg aggcccatct gtggaatact ttaagaaaat cgctccggat
     5341 aagaaaaata acatcatatt tgtttcatac cagataaatg gaaccttagg aagacgtgtt
     5401 atagatggcg ggctgatgga aataagtat
//
LOCUS       DASPFX010000228         3778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_942052, whole genome shotgun sequence.
ACCESSION   DASPFX010000228 DASPFX010000000
VERSION     DASPFX010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3778
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_942052"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..370)
                     /locus_tag="VD694_04930"
     CDS             complement(65..370)
                     /locus_tag="VD694_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12085.1"
                     /translation="MQILIAEDDLDISALYKKALEKRKHSVVLTYTGEACLENYLDAF
                     HNTKSPLKNDPGVTTKKLRSCHHPHLMRAILDIILVTKKQPLLIYTMLLFSTIKCQV"
     gene            complement(401..1105)
                     /locus_tag="VD694_04935"
     CDS             complement(401..1105)
                     /locus_tag="VD694_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12086.1"
                     /translation="MATYSASKTNTNLISSDIARLNFNHIGYSRNKNRGDFEYEDEID
                     GESENDGEIISIAMPVDNIDQLERESDINQVSLNTRINQIINDHLDWHSKASQSKISC
                     VPASLVARAVNQLTEQELFDFVQSIINDLCNLSLLLRGEFSLSSFLYTFNIWLKNTRT
                     PSRFEQDGQNYKIVIRHDMGYKYSYLIKEIFRRILEEKFHKSFQCTMTETTTLIKNKS
                     FIEIVPERRSLSCTHV"
     gene            1596..1799
                     /locus_tag="VD694_04940"
     CDS             1596..1799
                     /locus_tag="VD694_04940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12087.1"
                     /translation="MSDIAETWLKISQMPYRFEITGKNIKIIIEHDMGAKYSHLIREI
                     SRYLLEVAFETKSSCAITENAVI"
     gene            complement(2248..2493)
                     /locus_tag="VD694_04945"
     CDS             complement(2248..2493)
                     /locus_tag="VD694_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12088.1"
                     /translation="MPRLSADERINRLRDLTEALDKDNNRQDKASMMKILSEEFARHI
                     EEGKKCKKNENLGGAEAHRLISESIHGTLKTFETIQE"
     gene            complement(2552..2839)
                     /locus_tag="VD694_04950"
     CDS             complement(2552..2839)
                     /locus_tag="VD694_04950"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HXW12089.1"
                     /translation="MPECSVDAPGLPRTIATTSKSVYLRIHGYKEWYSYMYSKSELDE
                     RLTSVINLNAKKKAIYLNNDHGMLQNGLYLLNESVKRRVTVLSPKNSETFK"
     gene            complement(3137..>3778)
                     /locus_tag="VD694_04955"
     CDS             complement(3137..>3778)
                     /locus_tag="VD694_04955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12090.1"
                     /translation="PNSRLILTAVNILNAEPLTFDSSNEQITPQHILATSAYPLYNFR
                     WAEVKKGVYSWDGSLLSNTPLREVIDASPVNDKRIFIVENYPKKVGLLPKNLPEVYHR
                     ARDIMFSDKTEHNIAMSKVITMYLKYIDELYQLIEKHVDLTKVDKDQLKKIRHKYKKI
                     KHERGAEIKDILYITRDEPFPHIYENADFSPQTIKASIRAGEMKTVEILNRRQ"
BASE COUNT         1139 a          675 c          670 g         1294 t
ORIGIN      
        1 gaagcaaaaa taattctctg atgaggattt acccccagaa tttctttggc tacatccata
       61 ccattcatac ctggcatttt atagtcgaga ataacaacat cgtatagatt aagaggggct
      121 gtttctttgt tactagaatt atatctagaa ttgctctcat tagatgtgga tgatgacagg
      181 accttagttt ttttgttgtg actcctggat cgttcttaag cggggatttc gtattatgaa
      241 atgcatctaa atagttctct agacaagcct ccccagtgta cgttagaacc acagagtgtt
      301 ttcttttttc cagagctttt ttgtaaaggg ctgatatatc gagatcatct tctgcaatta
      361 gtatctgcat atttatcgga tattaggatc aacgagcaat ctatacgtgt gtacagctca
      421 aacttcgccg ttcaggaact atttctataa agcttttatt tttaatgagt gtagtagtct
      481 cagtcattgt gcactgaaat gatttatgaa atttttcttc taatatacgt ctaaatatct
      541 ctttgataag ataagaatac ttgtatccca tatcatgccg gattacaatt ttatagtttt
      601 gtccgtcctg ctcaaatcta ctaggagttc gtgtgttctt taaccaaata ttaaaggtgt
      661 atagaaatga tgaaagactg aactctcccc gtaataataa actcagatta catagatcat
      721 ttattattga ttgaacaaaa tcaaataact cttgctccgt aagttgattg accgctcgag
      781 ctaccaacga tgcaggtaca caagaaatct ttgattgaga ggctttagaa tgccaatcca
      841 aatgatcgtt aattatttga ttgatccttg tgtttaagct cacctgattg atatcagatt
      901 cgcgttcaag ttgatcaata ttgtcaacgg gcattgcaat agatattatt tcgccatcat
      961 tttctgactc accatcaatc tcatcctcgt attcaaaatc acctctattt ttatttcgtg
     1021 aatagcctat atgattaaaa tttagtcttg cgatatcact agagattagg ttagtatttg
     1081 ttttgcttgc tgaatatgtc gccatattta ttaagcctta cgcattatgt tttataaggc
     1141 ttataatctt cagtttgaag gttgaaacaa gatattccag attaaatgta ttgaggaatt
     1201 ctaatgccta actgaagagt gtcaatcttc aacttgaacc ttaagtatat tatatcttag
     1261 tatccttaat gctatctgaa gtatctggag tgtcaaagac gcctaccaaa gggatgactt
     1321 ttcggttgtc cagtgaaacg atacaacagt taaggaaagt gtcagaatca agaaacgtct
     1381 cttttaatac attatttaac caaataatcc aagcatatct cgattggcat agtatggctg
     1441 caaatgccaa gttatattac cctaccgaaa tcatttctaa ttctattaat tagtgaactc
     1501 acagaagacg aattgaatga gctaactcgc gagacagcaa aaaatgatct tgttgacata
     1561 ggctttttct taagggcgga tttacaattg catccatgtc agatattgca gaaacatggc
     1621 taaaaatatc acagatgcct tatagatttg agattactgg aaaaaatatt aagattatca
     1681 ttgagcacga tatgggagca aaatattctc atctaattag agagatatct cgatacctat
     1741 tggaagtagc gtttgaaacg aaatcatcgt gcgctattac agaaaatgcc gttatataaa
     1801 gattaaacag tgatttcata cagacctaat tgtatataaa agtcatattt aggatataaa
     1861 aaattttttt acgattagtt gaaaggcgac tataggtaaa ctcttattca tgctttgaaa
     1921 caatactcaa tacgtatatt tcttattcat gagttgaaaa agcaacaatt gaaacaatga
     1981 tagctacggg agagtataac aacatagaga cagaacatgc ttcggtattg aaaatcaatg
     2041 gagagaagat atctacactt atactactcg tagtctaggt ttgcttatat atcattgcta
     2101 atttataata tagaaactca atcaaaaagt ggatggtgcc accaacttga tcatttgcgt
     2161 gcttggggtt ggacaccact gttagataac gggcaatatt gaacaaaagt attacaacat
     2221 atgtctggcc gcattggcaa tatcagttta ttcctgtatc gtttcaaatg tcttaagtgt
     2281 tccatgtata gactctgata tcaacctatg agcttcggct cctcccaaat tctcgttctt
     2341 tttgcacttc tttccttcct ctatatgtct agcaaattct tcggatagaa ttttcatcat
     2401 actggcctta tcctgtctgt tattgtcctt atcgagggct tcagttaaat cgcgaagtct
     2461 attgattctt tcatctgctg ataatcttgg catatctccc atagattata cttcaatgta
     2521 tttagcggtt gaaataatca aaacatcatt attatttgaa agtctcgcta ttcttaggcg
     2581 ataatactgt aaccctccgc ttaacggatt cattcagcag gtaaaggccg ttctgtaaca
     2641 tgccatgatc attatttagg taaatggcct tcttctttgc atttagattt atgaccgaag
     2701 ttaaacgctc atcaagctca gacttagaat acatgtaact ataccattcc ttatatccat
     2761 gtatccgtag ataaacggat ttactagtcg tggctatggt acgaggtagt ccaggtgcat
     2821 caactgagca ttctggcatt ttgtctccac agaattaaat ccttgattaa tataccataa
     2881 aaatggggaa ggccgtcttg cgttccatga atacgtataa cctgatgtcc ctattcgaat
     2941 taaggagcca gacattatat ctcatgacag ggatcactaa ttaaaatatg gccgtatatt
     3001 tggattccta agctgtggtg taattgatgt gtcatcgcta gacacaatat atttgttaaa
     3061 aaattattta acagttgatt taaatagcga acatatgtgt cgagttcgtt taagttgcgc
     3121 gatttgtgtt accttgtcat tgcctccgat ttagtatttc aactgttttc atctcgcccg
     3181 ctctgattga agcttttatc gtttgaggag aaaaatctgc attttcatag atatgaggga
     3241 aaggttcatc tcgcgttata tacaaaatat cctttatttc ggcaccacgt tcgtgcttta
     3301 ttttcttata tttatgacgg attttcttga gctggtcttt atccaccttt gttaaatcaa
     3361 catgcttctc tattagttga tagagttcgt cgatgtattt gaggtacatt gtaatcactt
     3421 tcgacatggc gatattgtgt tctgttttat cagaaaacat aatatctctt gccctatgat
     3481 agacctcagg tagattcttt ggaagtagac caactttttt tggataattt tcaacaataa
     3541 agatccgctt gtcgtttaca ggcgaagcgt caataacctc ccttaatggg gtattactaa
     3601 gcaggctccc gtcccaagag tatactcctt tcttaacctc agcccatcga aaattgtaaa
     3661 gaggataagc agaagttgcg agtatatgct gtggcgttat ttgttcattt gaactatcga
     3721 atgttagtgg ttcggcgttc aatatgttta ccgccgttag tattaaccta gagttagg
//
LOCUS       DASPFX010000229        11453 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1566179, whole genome shotgun sequence.
ACCESSION   DASPFX010000229 DASPFX010000000
VERSION     DASPFX010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11453
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566179"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(816..1229)
                     /locus_tag="VD694_04960"
     CDS             complement(816..1229)
                     /locus_tag="VD694_04960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12091.1"
                     /translation="MLIIVSIFFVPVLQQSIFANHGKEIDLDFSDAQFLILPEKSMLQ
                     VKFTATYSVLDPDMVGKQINGMMQITTTNGTIVKTSSVPNGFKADKTGFQQFVTSLPA
                     TSTKSITATVLLTDLNKTSALSNSINRDLVLNKTQ"
     gene            complement(1595..2227)
                     /locus_tag="VD694_04965"
     CDS             complement(1595..2227)
                     /locus_tag="VD694_04965"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HXW12092.1"
                     /translation="MKSAQTSISKWQLKADYVETCNCDFGCPCNFNGFPTNGFCRALT
                     LYHIQVGSYGDVKLDNLDIVTAFSWPKAIHEGNGTVQLFITKNSNEQQRNSIIAIFSG
                     RAKGNGPFVIFASTCKYFLEPQFVDINAKIDGKKSSFSIPEIMDVQVESFVNPVTGEE
                     QDTKIQLPRGFIWKLAEAAKTKLMRISTPHLNFDDSGKNAFYSVVEFSGP"
     gene            complement(2608..3972)
                     /locus_tag="VD694_04970"
     CDS             complement(2608..3972)
                     /locus_tag="VD694_04970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12093.1"
                     /translation="MGKTANNSLNFLKKFYNRFSTGSVHNTTKIYVIVYIVLTLIVID
                     TSLNQNSEMRSHLEIAGLDTLLFVGIGVIVIGGQLYVLEFVRQKSSQIRKNAQYLRIL
                     HNIVLLIQYMVVSIFVFVLAQIIITQQYSPIALTIVTTVTYGLTIGLMTIFTIIFFSW
                     YKSNRNSVVILIYGLSFAAVVIASAIFLTGSLYRLVEKPPYISHEDLAPSVKSKPGSL
                     LYDLAKTYHYADIVSFLLKWVATAMLLYHYSQKMGKIRYWTLISLPLVYFGGTYLDDY
                     HLYEPHTEIDKLYWDLYTSLNSTAGGILFYIGFIVAARHFHGNMAVKDYLIMCGFGFL
                     LFFSAGQSTLANTLFPPFGLATMSLYGLSTYMILLALYSCAISVSEDIELRKSIKKST
                     LRESKFLHSMGTAHMEKDFTRRMVLKARQEQEERMQKSAGIKSSLTDDDIMNIIEEVE
                     RDSR"
     gene            complement(4052..4261)
                     /locus_tag="VD694_04975"
     CDS             complement(4052..4261)
                     /locus_tag="VD694_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12094.1"
                     /translation="MNKIAFSAIFTILVTSLGAVGLTGLTISSVIAQEDNETMTGNMT
                     MGAANMTDTNMTNGTGNISGVEDPF"
     gene            complement(4749..5126)
                     /locus_tag="VD694_04980"
     CDS             complement(4749..5126)
                     /locus_tag="VD694_04980"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HXW12095.1"
                     /translation="MSGKMTPEEVLNSVTEGINAGDLDSLMTLYEPLACFASQPGQLT
                     KSPDGIRQSLINFINMKGKLDLKVKRVLEANDLALVTTEWSFSGTGSDGKRVYMTAKS
                     ADVLRQQPDGTWRFVIDNPWGTD"
     gene            complement(5489..6106)
                     /locus_tag="VD694_04985"
     CDS             complement(5489..6106)
                     /locus_tag="VD694_04985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12096.1"
                     /translation="MFDNDNTYHRLSVCGLVLVMALLGITLSLVANAAEDSEKLKQES
                     MDAFKQFNNMSEEQRNSAMQTMSDKDMSMIMMGAAQINNEVNETIQAMVPPNTDMSSV
                     YELRSGNFTNSGNISKVSGVSRILSVNDIEFLRFEHFNITNGPELHVYFTNKGDLVDS
                     KDLGILKGNIGPQNYFLGDIADQYDTVVIASKPFKTTYAKAMLEP"
     gene            complement(6288..7943)
                     /locus_tag="VD694_04990"
     CDS             complement(6288..7943)
                     /locus_tag="VD694_04990"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HXW12097.1"
                     /translation="MARNSRRFLVPFVAGLAAGALAVAVSIILKDTIGGLFLPEIASQ
                     ALFSVTPGEFESQAVENFGPLAKYSAFIGSIIANIVVFGIVGIFLDKLFARIRRRGYL
                     QDALLSSILSYMIFGLVAIVLVILIQSRSGVQVVPLSLIVLSTIPSHLIFGFMFSSFF
                     HGRIKSKSREASEPMPSNDKSIGPLDVKYSRRAFLRLLAGSAIALPIIYFGVDRLISR
                     QNEEQELESTAPLLPQSGPKPKGFEDPNLAPLLASEVTPTYLFYRIDINPIVPEVDSK
                     SWNLTIKGLVEKPLNIDYDQIKAMPSVEEFVTLECISNKIGGELISTALWKGVRLSYL
                     LSEAGIKPNVKYVVFRCADGYDVGIPIERSQMEGTILAYNMNNGPLTSKHGFPVRAIV
                     PGLYGMMNPKWITEIELVDEVYEGYWQRLGWANNAEVKTGSSILIPGQAAARQRFRKL
                     DETVVSSDESKVPIAGIAFAGDRGIAKIEVSTDGGTTWKTALVKDPLSKYTWVLWTAG
                     YVPPNEENYSIVVRATDKTGKVQTTEMSSPFPNGATGYHTITV"
     gene            complement(8076..8450)
                     /locus_tag="VD694_04995"
     CDS             complement(8076..8450)
                     /locus_tag="VD694_04995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12098.1"
                     /translation="MSNKIIVSVLVLAIGITVLIGVTSKVIFSQDLSVSDIQSVSAIN
                     NQTMMMPGGNMTFGSSLDNAKMHLMEAIMDLNEGDVKGAIMQLNMTEQGIKMHEKEML
                     GMMNSMKPNVSTTALKAQNDSS"
     gene            8727..10046
                     /locus_tag="VD694_05000"
     CDS             8727..10046
                     /locus_tag="VD694_05000"
                     /inference="COORDINATES: protein motif:HMM:NF015418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HXW12099.1"
                     /translation="MHWTPSNYTSVRTAYSTLTNAITIRPTAETIDTKKAVGRVLWTD
                     IISPIDIPSSNRSHMDGFVVKYNDISMLSHREPIKLKLVPGRKDSKNENQMLLAGQAI
                     RISTGEVLPRLGDTVIPLEYAQFDSKNNTIIIQKDMVKGSFISFKGGEIARKDLLLNA
                     GHVLRIQDLALASTLGIQKLRIFKKPRVAIIPTGSELTDKINDAKRGKILNTNSIVIS
                     NLIEISGGMPLDLGITPDNNHKIKNKIRTALSKSDIILTTGGSSVGVRDLVAESINNI
                     GKPGILVHGIKLDRGRVTGLAALRNKPVIILPGPIQGAVNAFIVFVQPLTRFMLGLQP
                     YTKPIISAKLTKDWNARKKFQNFTKIVYVKMSRSASGELYASPITGETTDITVLTGSN
                     GFIFVPERLTLLKKGQKVKINTFPGLSFSSGNPIEFPYPSEKTFFPF"
     gene            complement(10054..10824)
                     /locus_tag="VD694_05005"
     CDS             complement(10054..10824)
                     /locus_tag="VD694_05005"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HXW12100.1"
                     /translation="MNEQLLIILVPFFFAVSFFYSSVGFAGGSSYIAILVLVGVNLFT
                     IPPVSLALNIVVASIALFNYLRAGHLSLRISIPLLISVPFAFIGGSTILPEKTLILIF
                     VIALFSASAMLLLSGNQIKIRQEKIRKLNLSISRLSLITLPLGAVLGTVSGLVGIGGG
                     IWLSPILILTGLANPKIAAASASLFILTNSISGLVAHSITQEVDFALILPLAFVVLLG
                     GFLGSRLGAFKLSHEKLIFIIGIIVAVAGINLATRLSN"
     gene            complement(10820..>11453)
                     /locus_tag="VD694_05010"
     CDS             complement(10820..>11453)
                     /locus_tag="VD694_05010"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdenum cofactor synthesis domain-containing
                     protein"
                     /protein_id="HXW12101.1"
                     /translation="TGVEMEALSGACIGALTIYDMLKPIDDTLFISSVKLVEKSGGIG
                     QFKINDGNKIRAGVIVVSDSVAAGKREDKSGKFIVKTLKDKSIHVVKYQVVPDDSSII
                     EELLIKYSDDLHLNLILTTGGTGLGPRDVTPESTRKVIEREITGIAEGSRAYGQRRTP
                     LSMLSRGIAGVRGKSLIINIPGSLNAVAESLEFLFPGLEHAFKMMGGDGH"
BASE COUNT         3626 a         2234 c         2008 g         3585 t
ORIGIN      
        1 taacgatagg gcaaaagccg aggacgatgt tttttcagat acggtttgtc ccatgcttaa
       61 tttgctcgat tatcaaagat aagaggcacg tctgcaatgc aatgcaacgc catctaaatt
      121 tgtataaata aataaaatga agagacaagt ccaggtctaa aaaagattct tacgtattca
      181 ctcaataaat aaatgactgg tgagatggtg gaatattgtg atgaactaga aaaatccaaa
      241 taagtcccac tactcgtcgt tttagagttc acaagttgaa aacaaatcgt tcttcagagt
      301 aaaatcataa ttatttatta cattattcat gactatgcct ctcaggactt gctcaaagaa
      361 gtcgataata taaaagtaac aattttgatg gattttattt atcactacaa ttcagaaaag
      421 tagttagaga taacaattag aaaagtatta tgcaatttta cgaaatgcca gtaggcggtc
      481 tcctgtcttg acggtgttcc atggaaatgt gatagctcaa catctcagga gtctcaaaaa
      541 tccttgcaca tatctcacat ctgagtttct ttggctttac ttctgcagtg gacatttcca
      601 aattaatatg gtaaacgtac cagataaggt tttttgacta gaattgtatc aaaatacgat
      661 taacctgaga agaggtcgga agattgattt gattgcatga taaggagcaa tcaagcaatc
      721 agttcttcct aatctctaga atcctaatat agaagaggat ttggatccaa aaagttagtt
      781 taccctttgg accttatagt ttggcaattg aaatattatt gtgttttatt caagactaaa
      841 tctcgattta tagaatttga cagtgcagaa gtcttgttta aatctgttaa caacacagta
      901 gcagtaattg acttagttga agtagctggc agactagtaa cgaactgctg aaatccagtt
      961 ttatctgcct tgaatccatt gggaactgaa gatgttttaa ctatggttcc attagttgta
     1021 gttatttgca tcattccatt aatttgctta ccaaccatgt cagggtcaag aacagaatag
     1081 gtagcggtga acttaacttg aagcatgctc ttctctggta atattaaaaa ctgggcgtcg
     1141 ctaaagtcaa gatcaatctc cttgccgtgg ttagcaaata ttgattgctg taagactgga
     1201 acaaaaaata tactaacgat tatcaacatg aaaaaattcc catgattcct tgatttttca
     1261 ggccaattca tcatacattc atattttatt gcagagtata atttgaattt aaatccaaac
     1321 tgatatactt tagctttgca tcgctgttcg acaaaatgcc agaagttcta tttaatcaac
     1381 tgaaaattaa agaacattca ttatatcgga atttaatcat cgatactgat gtgccgaatc
     1441 tgtgtatcgg ataacttttt tgccaacgtc atgatttccg cattcacata aaaaatcaaa
     1501 taccaaacaa tagaactgca ctacatacaa cgttcaaatg ctctgcaatg acagaattaa
     1561 gctcgcttta atttacttct ttagagccca ataatcaagg accactaaat tctacaacgg
     1621 agtaaaaagc atttttgccc gaatcatcga aattcaagtg gggtgtggat atacgcatta
     1681 gctttgtttt ggctgcttcg gcaagtttcc agataaaccc cctcggaagc tgtatcttcg
     1741 tatcctgttc ttcaccagta acaggattta cgaaactttc gacttgaaca tccattattt
     1801 cagggatgga aaaactactc ttcttgccat ctatttttgc atttatatcc acaaattggg
     1861 gctcaagaaa atatttacat gttgacgcaa atattacgaa cggaccgttt cctttggctc
     1921 gaccggaaaa gatggcgata atagaattgc gttgctgctc atttgaattc tttgtaatga
     1981 atagctgtac agttccgtta ccctcgtgta tcgctttagg ccaggagaac gctgttacaa
     2041 tatcaagatt gtctagttta acatcaccat agctccctac ctgaatatga tatagtgtca
     2101 aagccctgca gaatccattt gttggaaacc cattgaagtt acatggacat ccaaaatcac
     2161 agttgcaagt ctctacataa tcggccttca attgccattt agaaatagaa gtttgagccg
     2221 acttcattat tagtttaaag gataatagga tattaagtat ttcctagatg cagggtattg
     2281 taacaataaa agacacttga accccatttt agaaccgata ggtgcgtgat tatcgaaggg
     2341 ccggactatt tacactttac tatgctatta attgttctct tttcagtaaa ataacataat
     2401 ctagaatttt tttgctatta atagttgaat tcagaattta taattagaaa gacaagaagt
     2461 tttgattacg aatcaacaaa gctttaaaaa aatgagaata atgatctcat ataacctcac
     2521 tatattttaa atattattca taattataat gaaagtagta aacaaaataa atctttgatt
     2581 ccatggtaaa caactatatc gttttatcta tcgagaatcc ctttcgactt cctcaataat
     2641 attcattatg tcgtcatcag ttaatgacga cttgattccc gctgattttt gcatacgttc
     2701 ttcttgttcc tgtctagcct tcaataccat tcttcttgtg aagtccttct ccatatgtgc
     2761 tgtccccatg ctatgaagaa actttgattc acgcaatgtg gatttcttta tggatttgcg
     2821 tagctctata tcctccgaga ctgaaattgc gcaggagtaa agggccagta atatcatata
     2881 tgtagataat ccatatagtg acatcgtggc gagcccaaac ggtgggaaca aggtatttgc
     2941 cagagtactc tgacctgcac tgaaaaaaag taggaatcca aatccacaca ttatcaagta
     3001 gtctttaaca gccatatttc catgaaaatg ccgagctgca acaataaatc ctatgtaaaa
     3061 caaaattccg cctgcagtag agtttaagga tgtatagaga tcccagtaaa gcttgtctat
     3121 ttctgtatga ggttcatata ggtgataatc gtccaaataa gtgcctccaa aataaaccaa
     3181 aggaagactg atcaaggtcc agtatctgat ctttcccatc ttctgagagt aatgatacaa
     3241 aagcattgca gtagcaaccc atttcaaaag aaaggaaaca atatcagcat aatgatacgt
     3301 tttagcaaga tcatataata gagatcctgg cttcgatttt accgaggggg ctagatcttc
     3361 atgtgagatg tagggaggtt tttccacaag ccgataaaga ctgcctgtta aaaaaatcgc
     3421 tgatgcaatg accaccgcgg caaaagacag accataaata agaattacta cggaattcct
     3481 gtttgatttg taccatgaaa aaaatatgat ggtgaagata gtcataagac caatagtcaa
     3541 accataagtc acagtagtaa ctatcgttag agctatggga gagtattgtt gagtaataat
     3601 tatttgggcc agtacaaata caaaaattga taccaccatg tattgaataa gaagtacaat
     3661 attatgtaaa atgcgaagat attgagcatt cttgcgaatc tgactgctct tctgtctaac
     3721 aaattctaga acatatagct gtccaccaat gactattact cctataccaa caaacaatag
     3781 agtgtcgagc cctgcaatct ctaggtgaga acgcatttca gaattttgat taaggcttgt
     3841 atctattaca attagtgtaa gaacgatata gactatgaca tagatcttgg tagtgttatg
     3901 gactgaacca gtagaaaatc tgttataaaa tttcttgaga aaatttaggc tattgttagc
     3961 agtctttccc aatccttaaa ctgcaccaca ctaaaaaaag tcagagttgg agatacttat
     4021 atttgtgcaa cctttggatt ttttatatct attaaaatgg atcttcaaca ccggatatgt
     4081 ttccagttcc atttgtcatg tttgtgtctg tcatgttagc tgcacccatc gtcatatttc
     4141 cagtcattgt ttcattatct tcctgtgcta tcactgaaga tatagtcaat cctgtcaatc
     4201 ctactgcgcc taagcttgtt acgaggatgg taaaaattgc ggaaaatgct attttattca
     4261 tttctgaata agaggtatat cgtactatat aagtagatta tggaagttaa ttatttgacc
     4321 agaaatttcg atttatattt cccttttttc atatggagct tctttgaata gttttttata
     4381 tttagcggta tacttctcgt tttcaggatt tttttcttta tggtataata actacgttac
     4441 ttacgcttag aaaatatccg taggcgtctt cagaaaaaaa atgagctttt atccattaga
     4501 ttcattagaa tcgtatgata taagcaaata tgaaccgaaa atgtgcttta atcccgtttt
     4561 agtaaaaatc aattctcaaa atggttccca aacctccgag acctgactca gccttttgaa
     4621 ccgtcttatc attatcaagt aacaattttg gatccgaatt gttaacaata tgtatctgtc
     4681 gtcgaagacc taacgaatct tcaatgtttg tttgttaata gaataatttt tttattcctc
     4741 ctagaggatt agtctgttcc ccagggatta tcgataacaa atcgccaagt tccgtcaggt
     4801 tgttgacgta gaacatctgc agatttagcg gtcatataaa cacgctttcc atcagatcca
     4861 gttccactga atgaccattc ggtagttaca agcgcaagat catttgcctc aagtactctc
     4921 tttaccttaa ggtccaattt gcctttcata tttatgaaat tgatcagact ttgacgtata
     4981 ccatccggac ttttagttag ctgtcctggt tgagaggcaa aacatgctag aggttcgtat
     5041 aatgtcatta aggaatctag atctccggcg ttgatacctt ctgtcaccga attaagtact
     5101 tcttcaggcg tcatctttcc agacatgcac cgatattgca atagctgata ctataagttt
     5161 actatttgag gaacaattta gtttaaaatt ttcaaagtta tgattcggat tcctcaatag
     5221 aagaaaaaaa cttgaaagac aggctagaaa agcaataatg atattttcaa aacatgatgt
     5281 gcattcatta agaaattact tagtagaaga acaaaatgaa atgaccagtt ggatccatct
     5341 agctatttca gagtgcagta aaataaagaa agaggataga agccatcaat aaaaccataa
     5401 agctaaatac gaagtggtag accctaatac atgcacggtt ccagtcccga cggtagaaga
     5461 cttgacgatt gttcgagctc ttacacggtc atggttccaa cattgctttt gcatatgtcg
     5521 ttttaaatgg ctttgatgct atcactacag tatcatactg gtcagcaata tcacctaaga
     5581 agtagttttg tgggccaata ttccctttca atattccgag atctttacta tctactaaat
     5641 cccctttgtt agtaaagtat acatgaagct ctgggccatt cgttatgtta aagtgttcaa
     5701 atcgtaggaa ctcgatatca tttacagaca gtattcttga aaccccactg acttttgaga
     5761 tgtttccgga atttgtaaag ttaccgcttc ttagttcata tactgaagac atatcggtat
     5821 taggaggaac cattgcctgt atggtttcat ttacttcgtt gtttatttgt gcggctccca
     5881 tcataatcat actcatatct ttatcactca tggtctgcat ggcagagttt ctttgctcct
     5941 cggacatatt attaaattgt ttgaaggcgt ccatagactc ctgttttagc ttttcagaat
     6001 cttccgcggc atttgcaact agagataatg ttattcccaa aagagccatc actaaaacca
     6061 agccacatac cgacaatctg tggtaggtat tgtcattgtc aaacatcaac taaagttctg
     6121 aaacatcgat agataaagtt tatttttaat taggatttca attaacaaaa tccctctagt
     6181 aacttaaatt tgaattaatt tgatagagca atagtttcat taactttttc cttacaccgc
     6241 tatagaaaag aagactctga ttgacatttt agattagtca tgcattccta tacggttatt
     6301 gtatgatacc cagtggcacc attgggaaaa ggagagctca tttcagtagt ttgaaccttt
     6361 cctgttttgt cagtagctcg aaccacaatg gaataatttt cctcatttgg aggtacgtat
     6421 ccggccgtcc aaagtaccca agtatacttc gagagtggat cctttactag ggctgttttc
     6481 caagtagtcc ctccatcagt gctaacttca atctttgcta ttcctctgtc tcctgcaaac
     6541 gctatccctg caattggtac tttactctca tctgaagaaa ccacagtttc gtctaacttt
     6601 ctaaatctct gccttgccgc tgcctgcccg ggaatcaata tggatgaacc agttttgacc
     6661 tcagcgttat tagcccatcc tagtcgctgc caatatccct cataaacctc atctaccaat
     6721 tcaatttctg ttatccactt tgggttcatc attccgtaca gacctggcac tattgcccta
     6781 actgggaacc cgtgttttga ggtaagtgga ccattattca tattatatgc tagtatagta
     6841 ccttccattt gggatctctc tataggtatt cccacatcat aaccgtcggc gcacctaaat
     6901 acaacatatt ttacatttgg cttaattcca gcttcactaa gcagatagct taaacgcaca
     6961 cccttccaaa gagcggtgct tattagttcc cctccaatct tgttacttat gcattctaat
     7021 gttacaaatt cctcaactga gggcattgcc ttaatctggt catagtcaat attcaatggt
     7081 ttttctacta gcccctttat tgtaaggttc catgactttg aatcgacttc tggaactatt
     7141 ggattgatat caatccggta aaacaaatat gttggagtga cttctgaggc aagaagtggc
     7201 gccaggtttg gatcctcaaa gcccttaggt ttgggaccac tctgcggtaa cagcggggca
     7261 gtcgattcta gctcttgttc ctcgttttgt ctggaaataa gcctgtcaac cccaaaataa
     7321 attataggca atgctattgc cgagccagct aatagtcgta gaaatgctct tctactgtat
     7381 tttacatcca aaggaccaat tgatttatcg ttactaggca taggctcgga tgcctccctt
     7441 gatttactct ttattctgcc atgaaagaat gatgaaaaca taaatccaaa aataagatgg
     7501 cttggaatag tggatagcac tatcagggat agtggcacga cttgtactcc acttcgggat
     7561 tggattaaga taacaagtac tatcgcaaca agtccaaaaa tcatatacga caaaatagag
     7621 gatagcaaag catcctgcag atatcccctt cttctaattc tagcaaataa tttgtcaaga
     7681 aaaattccta cgattccaaa taccactatg ttggcaataa ttgaaccaat aaatgccgaa
     7741 tatttagcga ggggtccgaa attttcaact gcctgtgatt caaattctcc aggtgttact
     7801 gaaaacaatg cctgagatgc aatttctggg agaaacaaac caccaattgt gtcttttaat
     7861 attattgaca cagcaacagc caatgctcct gcagccaggc ctgcaacaaa cggaacaagg
     7921 aatctgcgtg aatttcttgc cacgtatttt gatcgaattt taacgattta aggttttttc
     7981 gactctatac tgaaacaata tctgatttat ggaatttctc aagtagaagc ttatgtttaa
     8041 tttattccac tatctgttta atttcgacta cgcagttatg atgaatcatt ttgagccttc
     8101 aatgcagtag tcgatacatt tggtttcata ctattcatca tgcctagcat ctccttttca
     8161 tgcatcttaa ttccttgttc agtcatattt agttgcataa tggcgccctt gacgtctcct
     8221 tcatttagat ccatgattgc ctccattaaa tgcattttag cattatctaa cgatgatcca
     8281 aaagtcatat tgccaccggg catcatcatt gtctgattgt tgatagccga tacggattga
     8341 atatcactta ctgacaagtc ttgactgaag atgacttttg atgttactcc tatcagaaca
     8401 gtaataccga tggccaatac caatacgcta acaattattt tgtttgacat tgccaaaact
     8461 agtaattatg accatatcat attatttaaa gagtatctaa atacgtaacg aaaaattaag
     8521 cgtagaagaa atgtttttgt tgatattttg tgcatcagga gacgctcttg ccttctcatc
     8581 aaaactattt tattatcaac ggtgcgactg ctattcaatg gaaacagagt aaatcacggc
     8641 tgttgaacgt actgtatatg gatggattga atcgaccgtt gtctttagag tactctctta
     8701 aatactaaaa gaatcacaca ataggaatgc actggacacc ttcaaactat acatcggtga
     8761 ggactgccta ttccacgcta acaaatgcaa taaccatcag gccaacggca gaaacaattg
     8821 atactaagaa ggcagtggga cgtgtgttat ggactgatat aatttcacct attgatattc
     8881 catctagtaa ccgttctcac atggatggat ttgtcgtaaa atataatgat ataagtatgt
     8941 tatctcatcg tgaaccaata aaacttaagc tagtgccagg gagaaaagat agtaagaacg
     9001 aaaaccaaat gctgctcgca ggacaagcta ttaggatatc aactggagaa gttctaccgc
     9061 gtttgggaga tacagttatt cctttagaat atgcgcagtt tgattctaag aacaatacaa
     9121 ttattattca aaaagatatg gttaaagggt cgtttatatc atttaagggt ggcgagatcg
     9181 cacgtaagga tttgttacta aacgctggac atgttcttag aatacaggat ttagcattag
     9241 cctcaacact tggaattcaa aaactgagaa ttttcaaaaa accaagagtt gcaattattc
     9301 ctactggcag tgagcttaca gataaaatca atgacgcaaa gaggggaaaa atactcaata
     9361 ctaatagtat tgtcatatct aatttaattg agatatcagg aggtatgcct ctagatcttg
     9421 gaattacacc tgataataat cacaagataa aaaataaaat tagaactgcc ctatctaaaa
     9481 gtgacatcat cttaacaact ggaggatctt ctgttggagt acgtgacctt gttgctgaat
     9541 caataaataa cattggaaaa ccaggaattt tggtgcacgg aataaagctc gatagaggaa
     9601 gggtaacagg acttgccgcc cttcgcaaca aaccagttat tattcttccc ggaccaatac
     9661 aaggagctgt taatgccttt attgtatttg tacagccact cactagattt atgttgggtc
     9721 tacagcctta tactaaaccg attatttcag caaaacttac taaagactgg aacgcccgaa
     9781 agaaatttca aaactttacc aaaatagtat atgtaaagat gtcgcgatct gcatcaggcg
     9841 aactttatgc aagccccata acaggggaaa caacggacat aacggtacta actgggagca
     9901 atggctttat ttttgtaccc gaacgcttga ctctgctaaa aaagggacaa aaggtaaaga
     9961 taaacacatt tcctggtctg tctttttcat caggcaaccc aatagagttt ccttacccat
    10021 cagaaaaaac attttttccc ttttagaaat aaattagtta gacagtcttg ttgccagatt
    10081 aatccctgca actgccacta tgattcctat aataaaaatc aatttttcgt gactcagttt
    10141 aaaggccccc aatctggatc ccagaaatcc tcctaaaagg acgacaaagg ccaatggtaa
    10201 tattaatgca aaatcaacct cctgggtaat tgagtgagca acaagcccgc taatagaatt
    10261 tgtgagtata aataaacttg ctgacgcggc agctatcttt ggatttgcta ggcccgttaa
    10321 tatcaagatt ggcgataacc agatcccccc accaattcca acaagacccg aaacagtccc
    10381 taaaacagca cctaatggta atgtaattaa tgaaagccta gaaatactta gatttaattt
    10441 tcgaattttc tcttgtctta tttttatttg gtttccactt aatagtagca tggccgaagc
    10501 tgaaaatagg gcaattacaa agattagtat gagcgttttt tctggtaata tagtggaacc
    10561 tccaataaaa gcaaatggta ctgatatgag taatggaata gatatacgaa gtgataggtg
    10621 acctgccctc aaataattga aaagcgctat tgaagctaca actatgttga gagccaatga
    10681 cacaggaggt atggtgaata gatttactcc aacaaggact agaatggcaa tgtaactgct
    10741 tccgcctgca aatccaacac tagaataaaa aaaacttact gcaaagaaaa aggggacaag
    10801 tattatcagt aattgctcat taatgtccgt ctccccccat catcttgaat gcatgctcta
    10861 gccccggaaa taagaattct aatgactctg ctactgcgtt taaactccct ggaatattta
    10921 taattagact tttacctctt actcccgcaa ttcctcttga aagcatcgat aagggtgttc
    10981 ttctctgccc atatgccctg ctcccctcgg cgattcccgt tatttctctt tctataacct
    11041 tccttgtaga ttcaggtgtt acatctctgg gaccaagtcc tgttccccct gtcgtcaata
    11101 tcaagtttaa atggagatca tctgaatatt ttattaagag ttcctcaata atagaactat
    11161 cgtcaggcac tacctgatat tttactacat gaatactttt atcctttagc gttttaacga
    11221 tgaattttcc tgatttgtcc tcccgctttc cagctgcaac tgaatcgctg acgacaatca
    11281 cacctgccct gatcttattt ccatcattaa ttttaaattg accaattccg cctgactttt
    11341 caacaagctt gacagacgaa ataaataatg tatcgtctat tggttttagc atatcatata
    11401 tcgtcagtgc gccaatacaa gctccactta gggcttccat ttctacccct gtt
//
LOCUS       DASPFX010000230         5923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1446898, whole genome shotgun sequence.
ACCESSION   DASPFX010000230 DASPFX010000000
VERSION     DASPFX010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5923
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1446898"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VD694_05015"
     CDS             <1..873
                     /locus_tag="VD694_05015"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HXW12102.1"
                     /translation="YHSFSDTFNQLLLLIGIKTSSRVPTERHPFGYGKEQFFWSFVVA
                     TLLFGISGILSFEKGFASFYDPVHQIVNTEVSYSILAISAIFEGNALRIAFNLFKDTI
                     EARGEKVNLHKLFKEFQESKDPTILTVMVEDSAALLGIAIAAIGIYLSDVTNNMIYDA
                     LASISIGVVLMLFAFFLAKENRALLIGEAMSKQDHSKIIESVVKIPEVNRVITLRTMH
                     FGPNDVLVAMEVSLVDNITTDQIEQVIDTIEDKIKSVIDVKTSSKIYVEVERDSCPVD
                     SKKMHEHNKHEDGV"
     gene            complement(1261..3462)
                     /locus_tag="VD694_05020"
     CDS             complement(1261..3462)
                     /locus_tag="VD694_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor EF-2"
                     /protein_id="HXW12103.1"
                     /translation="MPKFKSTQDILRIIGNKDQIRNFGVIAHVDHGKTTMSDSLLAAS
                     GIISPSVAGQALALDSMKLEQNRQMTIRGANVTLYYEIGGKEYVINMIDTPGHIDFTG
                     RVTRALRAIDGVVVVSDSVEGIMTQTETVTRQALEERVRPVLYINKIDRLVKELRLDA
                     PAMQKWLSNIIAEFNKLVDIYAEPELKEKWKVSIQGNSVAFGSAKDRWGFNYNIAQKN
                     AVGFKDVYDAYNSDDQDLIKALSGKAPLHEAVLGMVVQHHPPPHVAQRYRIPKIWPGD
                     LDSDIGKSLVSCDDKGPILMMVTTINVDPQAGRIATGRLFSGTIKDGDEVYLIDGKRM
                     GKVQSVNIYMGNTREVVNMLPAGNIPALLGIDHAIAGETFSSVKNVPAFESIKYVSEP
                     VVTIAIEPKHPKDLPKLVEALRRITVEDPNLIVKINEESGETLLSGMGVLHLEIATSL
                     ILETGLEITTTQPLINYRETIRNSAGPIMSKSPNKHNKIFMRIEPLSEEIIELIKNGQ
                     IHEDLDKKQMAKLLREKGWSADEAKSVAAIDVSGNILLDQTKGVQFIQESMDSIRSGF
                     DDVIHSGPLAHETLRGVKFVLHHFVPHEDPAHRGLAQLMPATRRAMLGSMLLADPALL
                     EPILGMEIKCPQEQIGTVAGILSGKRGKLLNVEQKGVITIIQGEVPASETFDLSEVMR
                     GGTAGKALWNTYFKTWQVVPQSIFKTLVNDTRKRKGLNPEPPTSDEFVDKE"
     gene            3675..4532
                     /locus_tag="VD694_05025"
     CDS             3675..4532
                     /locus_tag="VD694_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HXW12104.1"
                     /translation="MKQVTLGHTPDADDAFMFYGIASGKISSPYFEIKHVIEDIEKLN
                     KMAIDHELDITAVSAHAYAFTKDYVILNTGGSFGINYGPIVISKKNIEIKDLNKYKIG
                     IPGKMTSANLLLNLAIGKFAGIEFIFSDVPKHVSSGLVDAGLVIHEAQISLGNEFQKI
                     LDLGKWWHDTTNGMPVPLGINVISNRSLTVKEIIEFDDLFRDSIKYGLEHLEDAIEYS
                     MQFGRGNPKSLIEKFVKMYVNDLTIDMGEEGKNSIITLLQNARRNNILSYDELLFIDS
                     NGKKIQSYR"
     gene            complement(4543..5640)
                     /locus_tag="VD694_05030"
     CDS             complement(4543..5640)
                     /locus_tag="VD694_05030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HXW12105.1"
                     /translation="MSIAGSTNALEKVIHGEELSFNDGMELMKNENVFNLGAAANLIK
                     KKLTGNTITFVASYYLNYTNVCAASCPLCAFYRKGTEPDSYTLTIEQILARAKIAIEQ
                     MKATELHIVGGFHPKLGLDYYEKMISEIKKEFPSVTVKALTPAEIHFISRITKNSVRE
                     VLSRLKDAGLDALPGGGAEIFSKDVRDIIVRGKCSGDEWLETAGIAHDMGIRTNCTML
                     FGHIEEPQHIIDHLIKVRELQKKTGGFITLIPLKFSLDNTELEQKGLIDKESSSIYDL
                     KVIALSRLMLANTLKNISVYWVALGKKLAQVALSYGGSDLVGTAFSEEIFKAAGKTTG
                     TSIQELVSLIKDAKYDPLQRDTFFNILKPTI"
     gene            5744..>5923
                     /locus_tag="VD694_05035"
     CDS             5744..>5923
                     /locus_tag="VD694_05035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HXW12106.1"
                     /translation="MNFFAQELIQKSDVSDILDQVLQGKRVGLNDCVRLMKSENTYAL
                     GMIGNILREKLFGKIA"
BASE COUNT         1782 a         1148 c         1064 g         1929 t
ORIGIN      
        1 tatcactcat tttctgacac ttttaatcag ctattactac taattggaat caagactagt
       61 tcgagagtac caacagagag gcatccattt ggatatggga aggaacaatt tttctggtca
      121 tttgttgttg cgacactact atttggaatt tcaggtatcc tatcttttga gaaaggattt
      181 gcttcgttct atgatcctgt acatcaaatt gtaaataccg aagttagtta ttcaatactc
      241 gcaatatctg cgatttttga aggaaatgca cttcgtattg ctttcaattt attcaaagac
      301 acaatagaag caagaggaga aaaggtaaat ctacacaaat tatttaagga atttcaagaa
      361 agtaaagacc ctaccattct taccgtcatg gttgaagatt cagcagcatt gcttggaatt
      421 gcaatagcgg caattggaat ctatctgtca gatgttacca ataatatgat ttatgatgca
      481 ctagcttcca tatccatagg tgtcgttcta atgctttttg cattcttttt agcaaaagaa
      541 aatagagcac ttctcattgg ggaagcaatg tcaaaacaag accattcaaa gataatagaa
      601 tcagtagtaa agattccaga ggtaaataga gtaattacat tacgaaccat gcattttggt
      661 cccaatgacg tccttgttgc catggaagta agcttggtgg ataacattac cacggatcaa
      721 atagaacagg taatagacac aatagaagat aaaatcaaat cagtaataga tgtaaagact
      781 tcatctaaga tttatgtaga agtggaaagg gatagctgtc ctgtagactc taaaaagatg
      841 catgaacaca acaagcatga agacggcgtg tgaacaatac tccagctcat gtctgactcc
      901 actacatatt taatgcaata tctcgttttc aactaatttt ttcgaattcg tagaggtgtt
      961 ttttgaattg cgcattccat catgtctatg tgatacgtcc tctacttgct gacacaagtt
     1021 gcaaatccat gaaacatgct ctttacaatc gttgcacctc aagattggca ccaaagtctt
     1081 tccacacgat ctacatgatt ccttgttaaa cacggtttat actcctcttt gtaattatta
     1141 tattatattt ggatgtagca tataaattct acactactgc ttgtagtatt ttttataaat
     1201 aagcctggat tattgaaatt atcacatcaa gaaaaaggag gttatgccct ctcggctagt
     1261 ctattctttg tctacgaatt cgtcggatgt tggaggttcg ggattcaatc cttttctctt
     1321 ccgggtgtca ttaacaagag ttttgaatat ggattgggga acaacttgcc aagtcttaaa
     1381 atacgtattc cacaaggctt ttccagcagt accacctcgc ataacttcag acaagtcaaa
     1441 agtttctgat gccggtactt caccctgaat aatggtaatg actccctttt gctcaacgtt
     1501 tagtagttta cctcgtttcc ccgataagat cccagcaact gtacctattt gttcttgagg
     1561 acattttatt tccataccaa gaattggctc caataatgca gggtcagcta aaagcataga
     1621 tcctaacatg gctcgtctag tagcaggcat taattgcgca agaccacggt gggcaggatc
     1681 ctcatggggt acgaaatgat gcaatacaaa tttcactcca cgaagagtct catgagcaag
     1741 aggacctgag tgtattacat catcaaaacc tgatcttata gaatccattg attcttgaat
     1801 aaattgtaca ccctttgttt gatcaaggag aatattaccg ctgacatcaa tggcagctac
     1861 gctctttgct tcatctgcac tccaaccttt ttctcgcaat aatttagcca tctgtttttt
     1921 atctagatct tcatgaattt gaccattctt aattaattca ataatttctt ctgaaagtgg
     1981 ttcaattctc atgaaaatct tgttgtgttt atttggcgat ttactcatga ttggcccagc
     2041 actattgcgg atggtctcac ggtagttgat aagaggttga gttgtagtaa tttctagacc
     2101 tgtttccaat atgagagagg tggcaatctc aagatgcaat acccccatgc cagatagtaa
     2161 tgtctctcca ctttcttcat taattttaac tataaggttt ggatcctcga cggtgattct
     2221 tcttaatgct tcaaccaatt taggaagatc ctttggatgt tttggttcta ttgcaatagt
     2281 aacaacaggt tcagagacat acttgattga ttcaaatgca ggcacattct taacagatga
     2341 aaatgtttct cctgcaattg catgatcgat acctagcaat gcgggaatat ttcctgctgg
     2401 aagcatattt actacctcac gagtgttacc catgtagata tttaccgact gaactttacc
     2461 catccttttc ccgtcaatta gataaacttc atctccgtcc tttatcgttc cagaaaacag
     2521 tctaccagta gctattctac cagcttgcgg atccacatta atcgtagtaa ccatcattag
     2581 aattggccct ttatcatcac atgacacaag agatttccca atatcagaat caagatcacc
     2641 tggccaaatt tttggtattc tatatcgctg tgctacgtgc ggaggtggat gatgttgtac
     2701 gaccattcct agcactgctt catgtaatgg tgcttttcct gaaagtgcct ttattagatc
     2761 ctgatcgtct gagttatatg catcataaac atctttgaag cctaccgcat tcttctgggc
     2821 aatattgtaa ttaaatcccc atcgatcctt cgcagaccca aatgctacac tgtttccctg
     2881 aatgcttacc ttccatttct cttttagttc cggttcagca tagatatcga ccaacttgtt
     2941 aaattctgca ataatatttg agagccattt ttgcattgca ggtgcgtcta atcttaattc
     3001 ttttacaagt ctatctatct tgtttatata tagaactggt ctcactcgct cctcgagtgc
     3061 ctgtctcgta acagtttctg tttgggtcat gattccttcc acagaatcag agaccacaac
     3121 tactccgtca atggccctca aggctctggt aactctacct gtaaaatcga tatggccagg
     3181 agtatcgatc atgttaatga catattcctt acccccgatt tcatagtaca aagttacatt
     3241 agcccctcta atggtcatct gtctgttttg ttctagtttc attgaatcaa gtgctaaggc
     3301 ctgacctgca actgaaggag aaataatccc tgatgcagcc aataaactgt cactcatcgt
     3361 agtttttcca tggtctacgt gagcaattac accgaaatta cgaatttgat ccttatttcc
     3421 tataattctt aagatatcct gtgtcgactt gaattttggc atcttataaa cgacaaaaaa
     3481 tctatccagg attattaaat cttccttatc ttacgaagga accatgtcaa attcgggttc
     3541 actggtggga atgcatttgg ccgtatacag atgattgcca atagatcaca atattcgctt
     3601 tctatgccca atttttcaat ttccatggct ctaatactgt aaaacaaaaa tatcgtcaga
     3661 atgttcactt ttttatgaaa caagtaacac taggacacac gcctgacgcg gatgatgctt
     3721 ttatgtttta tgggattgct tctggtaaga ttagttcacc ttactttgaa ataaaacatg
     3781 tcattgaaga tattgagaaa ttgaacaaaa tggcaattga ccatgaatta gacataacgg
     3841 cagtctcagc tcacgcttat gccttcacca aagattacgt cattttgaat actggtggaa
     3901 gttttggaat taattatggt cctattgtaa tctcgaaaaa aaacatagag attaaagatt
     3961 tgaataaata caagatagga attccgggaa aaatgacatc ggcaaacctt ctgctaaact
     4021 tggccatagg aaaatttgct gggattgaat ttatttttag tgatgtgcca aaacatgtat
     4081 cctctggttt ggtagatgca ggtctagtta ttcatgaggc gcagatttcg cttggaaatg
     4141 aattccaaaa aattctggat ctcggtaagt ggtggcacga tactaccaac ggaatgccag
     4201 ttcctttagg aattaatgtc ataagtaacc gatccttaac ggttaaagaa attattgaat
     4261 ttgacgacct tttcagggat tctataaagt atggactgga acatttggaa gatgccatag
     4321 aatattcaat gcaatttggt aggggtaatc ctaagtcact gattgaaaaa ttcgtcaaaa
     4381 tgtatgtgaa tgaccttact atcgatatgg gagaagaagg aaagaattct ataataacgc
     4441 tacttcagaa tgcaaggcgc aataacattc tttcatatga tgaattacta ttcatagata
     4501 gtaacggtaa aaaaattcaa agttatagat aattaataat aattagatgg tcggctttaa
     4561 tatgttgaaa aatgtatctc tttgtagggg atcatatttc gcatccttaa tcaaggatac
     4621 taattcttga atcgaagttc ctgtagtctt gcctgctgct ttaaaaattt cttcagagaa
     4681 tgcagtacca acaagatcgc ttccaccata tgacaacgca acctgagcta atttctttcc
     4741 taatgcaacc caataaacag aaatattttt caatgtgttt gcaagcatga gccgtgaaag
     4801 agcaattact ttcagatcat atatcgaaga actttcttta tctattagac ccttttgttc
     4861 aagttctgta ttgtcgaggc taaatttcag aggaattaga gtaataaaac cacctgtttt
     4921 cttttgtaat tctcgaactt taatcaaatg atcaatgata tgctggggct cttcgatgtg
     4981 accaaaaagc attgtacaat ttgttcgtat tcccatatca tgtgcgatgc cagctgtttc
     5041 aagccactca tctcctgaac atttgcctct cactatgata tcccgaacat ctttactgaa
     5101 tatctctgct ccacctccag gaagagcatc aagccctgca tcttttagcc tcgaaagcac
     5161 ttctctaact gaattctttg taatacgaga aataaaatga atttcggccg gtgttaaggc
     5221 ttttaccgtt actgatggaa attccttctt gatttcactt atcatttttt cgtaatagtc
     5281 aagtcccagt ttgggatgaa atccaccaac gatatgaagc tctgttgctt tcatctgctc
     5341 aattgcaatt tttgcccttg ccagaatttg ttcgattgtt agggtatagg aatcaggttc
     5401 agttcccttt ctataaaatg cgcaaagagg acagctagca gcgcaaacat tggtatagtt
     5461 taggtagtat gaagcaacaa aagttatagt gttaccagtt agtttttttt tgatcaaatt
     5521 agcggcagcg cccaagttga agacattttc atttttcatt agttccatgc catcattgaa
     5581 ggataattct tctccatgga ttactttttc caatgcatta gtactgcctg caatactcaa
     5641 caatttattt agatgatgtc gctatcggct ataaaatctt cacttttttg catgttttgt
     5701 aaagaataaa tatcgttgac aaacctcatg aatctaatag ctcatgaatt tctttgcgca
     5761 ggaattgatc cagaaatctg atgttagtga tattctagat caagtattgc aaggaaagag
     5821 agtggggtta aatgactgtg tgcgtttgat gaaatctgaa aatacctatg ctttgggcat
     5881 gattggtaat attttaagag aaaaactctt tggcaaaatt gcc
//
LOCUS       DASPFX010000231         5188 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_820675, whole genome shotgun sequence.
ACCESSION   DASPFX010000231 DASPFX010000000
VERSION     DASPFX010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5188
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_820675"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..599)
                     /locus_tag="VD694_05040"
     CDS             complement(<1..599)
                     /locus_tag="VD694_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12107.1"
                     /translation="MKHSKKKDNNTRKDKPVNPKKEREDRSYFAVTRKRRNRNLMIIV
                     PAIILLLGIVAYAVTVYSSHLERPGQNFGNIGSAHEHAAFAVKINGEKLDFSQPGYQV
                     RSQYIHVENNDGNTLHRHATGVPVGEFFRSLGMNVSDNCFTVENKTSYCSDGNSNLEF
                     YVNGNKTNSIANYVFNDEDRILIIYGNKNAMETRQDLDA"
     gene            complement(713..2146)
                     /locus_tag="VD694_05045"
     CDS             complement(713..2146)
                     /locus_tag="VD694_05045"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HXW12108.1"
                     /translation="MAIPGLAELTDGDENISPTLFLLSGPPAIGKRDYCREFLEEGLA
                     TQKRCIFISSKITENEKIDVLDIEDMKLKSLFINPVLLYEPAEEKSLQETLTKITAFL
                     SLARGNESQNGYHSSTRIEDNDNFIYFVMDSLNNFCDIFEVSVFKRFLARLVLQLKKS
                     KTIGIFTIDSPIAAEYQSIISFCDGLIEMKFEESNDSLIRKIRLLSMAGHAMTKPTWI
                     QFSIDKNGRFTFADDLLKCTLDGRVIQHPPVYYLDLPFHSEGCAVTYRKFMSVFKDLD
                     PKYEVLNYNFCFIDIVGLSNPGLAVHRQKEKIVRLNEFISSCNAFRKISDELKIILPA
                     GDGMAIGYENNPELPYKLSVELHGFLRKYNKRMAPDNQIKVRIGLSSGPVFTVYDISN
                     RLNVWGPGIIMARRVMDLGDSWHILITENFAMQLKPLYEEYRNNIRLIGSYEIKHGEK
                     INVYSAYSDDYGNPELPEKFKKIYTRQ"
     gene            complement(2223..3092)
                     /locus_tag="VD694_05050"
     CDS             complement(2223..3092)
                     /locus_tag="VD694_05050"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW12109.1"
                     /translation="MKQVITFHSYKGGTGKTTLAVNLAALLAKNGNNVCIVDIDVYAP
                     SLHAYFGDVVQNKIKNTINDYIVGACGVDDLLVQVTPISQFSDKGSLSGKIIGCFASP
                     KREDILKIEGVKEDKNRMNMLKRFINFREELIEKNDIDYVIMDSSPGIRFWAINALAL
                     SDIVFLTLKMGDMDIGGTKMIANEILAQFKEQGNTKYYLLLNRIAGYCIPYLQIGESH
                     TSHSEENFTTLTPVADDFRKKLTADTGIDVMTSIPCYCDIQFAQKEFLTVLGFPDHPF
                     SQQISNLKSLIEN"
     gene            complement(3311..3385)
                     /locus_tag="VD694_05055"
     tRNA            complement(3311..3385)
                     /locus_tag="VD694_05055"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3348..3350),aa:Gly,seq:ccc)
     gene            complement(3666..4667)
                     /locus_tag="VD694_05060"
     CDS             complement(3666..4667)
                     /locus_tag="VD694_05060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HXW12110.1"
                     /translation="MQLDQQYIDPLDKQLLNDIQWIFPLSERPYLEIAAKHGLSEEDV
                     MKRISLMKQSGLIRQINAIFDTRKLGYKSALVAFAVEKDKLDSVANEVNKHPGVSHNY
                     EREHEFNMWFTLAVPPDGDLKKDLERMASLNGVIKFRLLPTLKLYKIGVKLDMVNKDP
                     SKLTPDDSVKTIDQKKFELTSRDKEFIRELQKDLDVSVRPFDNSAKNLGITVDELFKK
                     AEEYESIGVMRRFAAILRHRDAGFAANGMIVWKVSDEKIDEAGYKLASFPQVSHCYRR
                     PVYPDWPFSLFSMIHARTIEAANKIAVELSNFIGIDEYRILFSSREFKKERVKYFVE"
     gene            4811..>5188
                     /locus_tag="VD694_05065"
     CDS             4811..>5188
                     /locus_tag="VD694_05065"
                     /inference="COORDINATES: protein motif:HMM:NF012998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HXW12111.1"
                     /translation="MKGKKVAFQGEHGAYSEIAATKFFPESELIPMRLFQHIFDALRS
                     DSIDCAVVPIENSIEGSVNEIYDLLLDADKKITGEMFLKIDHCLIALPNSTSVTKVLS
                     HPQALAQCRNYIKRMNLDAIPTYD"
BASE COUNT         1544 a         1016 c          835 g         1793 t
ORIGIN      
        1 aaggcgtcta gatcttggcg tgtttccata gcattcttat ttccatagat aatcaatatt
       61 ctgtcctcat cattaaagac ataatttgca attgagtttg tcttattacc attgacataa
      121 aattctagat ttgaattccc atcactgcaa tagctggttt tgttttccac agtaaagcaa
      181 ttgtcgctga cattcatacc caagcttcta aagaattccc caactggaac tccggttgca
      241 tgtctatgta atgtattccc atcgttgttc tccacatgaa tgtattgcga tctcacctgg
      301 tatcctggtt gactaaagtc cagtttttct ccattaatct ttactgcaaa ggctgcatgc
      361 tcatgtgcag aaccaatgtt gccaaaattc tgacccggtc tttcgagatg gctagaatac
      421 acagttactg cataagccac tattccgaga agcaatatta tggcaggaac aattatcatt
      481 agattcctat tccttctctt acgagttaca gcaaagtagc ttctatcctc cctctccttc
      541 tttggattga cgggtttgtc ttttcttgta ttattgtcct tcttcttact atgcttcatt
      601 tttaaccact aatcgacgat ttattcataa agactttgat ggataattta aagaaatctt
      661 tatcagaatc ataaaagcac gtgaaattga cggaatttcg tgattgactc aattattgcc
      721 ttgtgtagat ttttttgaat ttttcaggca attccgggtt cccgtaatca tcagaatatg
      781 cagaataaac gtttatcttt tcaccatgtt tgatttcgta tgaccctatg agtctgatgt
      841 tattcctata ttcttcatac aggggtttta actgcatcgc aaagttttct gtaatgagta
      901 tgtgccagct atcaccgaga tccatcaccc ttctcgccat tattattccg ggaccccaga
      961 cattaagtct atttgatata tcataaacag tgaaaactgg tccggaactt aatccaattc
     1021 taaccttaat ttgattatca ggagccattc ttttgttata tttgcgtaaa aatccatgta
     1081 actccacact caatttgtat ggtaattctg gattgttttc atatcctatt gccataccat
     1141 ctccagctgg aagaattatt tttagttcgt cagagatctt tctgaaggca ttacaggaac
     1201 tgataaattc attgagccta acaattttct ccttttgcct atgaacggcc aaccctggat
     1261 tggagagccc tacaatatcg ataaagcaaa aattgtagtt taagacttca tattttggat
     1321 caagatcctt aaagacagac ataaattttc tatatgttac agcacaacct tcagaatgga
     1381 atggtaggtc caggtaataa acaggaggat gttgaatgac tcttccatct agtgtgcatt
     1441 taagtagatc atctgcaaag gtgaatcttc catttttatc aatgctgaat tgtatccaag
     1501 ttggttttgt cattgcgtga cctgccatag aaagtaacct aatcttccta atcagcgagt
     1561 catttgactc ttcaaatttc atttcaatta agccgtcaca aaatgatata atggattggt
     1621 attcagctgc tattggagaa tcaatagtaa agattccaat agttttactt ttctttaatt
     1681 gaagaactag gcgtgccaaa aaccgcttaa atacacttac ctcaaatata tcacaaaaat
     1741 tattcaatga atccatgaca aaatatatga aattgtcatt atcttcgatt cgagtactgc
     1801 tgtgataccc gttctgcgat tcattgcctc tagccagaga aagaaatgca gttatctttg
     1861 tcaaagtctc ttgtaaggat ttttcctcag caggctcgta taagagaact ggatttatga
     1921 ataatgattt taatttcatg tcctctatat caagtacatc aattttttca ttttccgtga
     1981 ttttggaaga aataaaaata catcttttct gagttgctaa tccttcttcg agaaattctc
     2041 tgcaatagtc cctctttcct attgccggag gaccagacag aagaaacaaa gtaggtgaga
     2101 tgttctcatc tccatctgtg agctctgcaa gtcccggaat tgccattttg gatattatat
     2161 cgatcaggag ctatatacct attttttgtg agcactagat atcctaaaca aatctattgt
     2221 ctctagtttt ctattagcga ttttagattg cttatttgct gcgagaaagg gtggtccgga
     2281 aatccaagta cagtcagaaa ttccttttgt gcaaattgaa tgtcacaata acatgggatg
     2341 gacgtcatta catctatacc tgtatcagca gtcaatttct ttctaaagtc atcggccacc
     2401 ggtgttaacg tcgtaaaatt ttcttcagaa tgacttgtat ggctttcgcc aatttgcaaa
     2461 tacggtatgc aataaccagc tatcctgtta agcagaagat aatatttggt atttccctgc
     2521 tccttgaatt gcgccagtat ttcattagcg atcatctttg tgcccccaat atccatatct
     2581 cccattttca atgtgagaaa cacaatatca gataatgcta atgcgtttat tgcccaaaac
     2641 ctaattccgg gacttgaatc cattatgaca taatcaatat cgtttttttc aattagctct
     2701 tctctaaagt taatgaatct ctttaacata ttcattctat ttttgtcctc tttgactcct
     2761 tcaatcttta gaatatcctc tctttttgga cttgcaaaac aaccgataat ttttccgctt
     2821 aatgaaccct tgtctgaaaa ttgggatatt ggcgtaacct gaactagcag gtcatccacc
     2881 ccgcaagcac caacaatgta atcattaatt gtattcttga ttttattttg gacaacatca
     2941 ccgaagtaag catgtaggct aggagcataa acatcaatat ccacgataca tacattattc
     3001 ccattcttgg ccaacaatgc agccaagtta acagctagag ttgtttttcc ggtaccgccc
     3061 ttgtatgaat gaaaagtgat tacctgcttc aaactatatt gaaagaatga taaatacatg
     3121 tttttaagta tatgctaaaa tacttttttt tagtctacgg gcaaatatca ttgaaatata
     3181 gatcagaaag ttaattacat attttttatt tggatcttga caaagtaata ttgtcaaaaa
     3241 aaatcatcat taacataata tttcaattct tatcaatacg tgttgcaata tctgcgttaa
     3301 atgtcttaga tgcgaagtgc gggatttgaa cccgcgatcc cgagcttggg aagctcgtac
     3361 cttaaccagt ctgggctaac ttcgctcaat ctgcaaatac gttttacaaa taataaattc
     3421 ctatcttatc atgacatcta gattcaaacc attattcaat tgtatctgct ataattacgc
     3481 tctacctgaa ttcttctacc tttacatttt ctttgtaaga ataatataag taaaagatac
     3541 aaaatttagt aacaatatat gtggaattat cgtcaagtat ttttatataa aatcaataga
     3601 ggatttgcaa cttctggcat cacggaaact cgacagagga ttctaaagta cgatgaaaca
     3661 agatgtcatt ctacaaaata ttttaccctt tcttttttga attctcttga gctaaaaaga
     3721 atcctgtatt catcaattcc tataaaattc gagagttcta cagctatttt gttagccgct
     3781 tctatcgttc tggcgtgtat catactaaat aggctaaatg gccaatcagg ataaaccggt
     3841 ctcctatagc aatgacttac ttgagggaat gatgctaatt tgtaacctgc ttcatcaatc
     3901 ttttcgtcag ataccttcca aactatcatg ccattggcag caaatccggc atctctatga
     3961 cgcagaattg ctgcaaagcg cctcattact ccaattgatt cgtattcttc tgccttcttg
     4021 aataattcat ctactgtgat accaagattc ttggcagaat tatcaaacgg tctgactgag
     4081 acgtctagat ccttttgtaa ttctcttatg aattccttgt cccttgaggt aagctcaaat
     4141 ttcttttggt caattgtctt tacactatca tctggtgtca atttgctagg atccttgtta
     4201 accatgtcaa gtttgactcc tattttatat aatttgagtg ttggtaagag tcgaaacttg
     4261 attacaccgt taagcgatgc cattcgttca agatcttttt tcaaatctcc atctggagga
     4321 acggctaatg taaaccacat attaaattca tgttctctct cataattgtg actgacgccg
     4381 ggatgcttgt tgacttcatt agcaactgaa tccagtttgt ctttttctac agcaaatgca
     4441 accaacgcac tcttgtaacc taactttctc gtgtcaaaaa ttgcattaat ctgtcttatc
     4501 aaaccgcttt gtttcatcaa agaaattctt ttcatcacgt cttcctcact gagtccatgc
     4561 tttgctgcta tttccaaata cggtctttct gacagaggaa aaatccattg aatatcattt
     4621 aagagttgtt tgtctaaagg atcaatgtac tgctgatcta gctgcattca tgttaaattc
     4681 ttgtatcaag cattaaatac tttatcataa tttgtcgagt caagtatctt gatcattctg
     4741 attgtgacta taaatcttgg ttataagacc taaaaatata tgaattatta attttaagat
     4801 aatagatact ttgaagggaa agaaagtcgc ttttcaaggg gagcatggag catatagtga
     4861 gatcgctgcc acaaaatttt ttcccgaatc cgaacttatt cccatgagat tattccaaca
     4921 tatttttgat gcgttacgaa gtgatagtat tgattgtgct gtagttccaa ttgaaaattc
     4981 tattgaggga tctgtcaatg aaatctatga cctgttgtta gatgctgata agaaaatcac
     5041 tggagaaatg tttctaaaga ttgatcattg tttgattgca ttaccaaaca gtacttctgt
     5101 aaccaaagtc ctttcccatc ctcaggcatt agctcaatgc agaaattaca tcaagagaat
     5161 gaatctggat gctataccta catatgat
//
LOCUS       DASPFX010000232         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1479129, whole genome shotgun sequence.
ACCESSION   DASPFX010000232 DASPFX010000000
VERSION     DASPFX010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1479129"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            403..951
                     /locus_tag="VD694_05070"
     CDS             403..951
                     /locus_tag="VD694_05070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12112.1"
                     /translation="MDPENGNELEAKEIILGEIQNVRDNPPKVRQDGCAACHVLFTLI
                     DKMQISESRASDLLSQILFHDQQLNDSFIDMVENIHMKRRNMAIPFALKNRDAKDRHI
                     ESNFKNFLEEISSDFINYGHDLVLRKLVISAIALEIAQNIGIDYHAATEELYYYMRKN
                     DDRTNALLLEFNDRFYKNIKSK"
     gene            complement(1317..2168)
                     /locus_tag="VD694_05075"
     CDS             complement(1317..2168)
                     /locus_tag="VD694_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12113.1"
                     /translation="MRQIKLQLTTAYLGLASDKKLFTILVMIITITIDSQFGYIADFI
                     PQQLSSDTGITIFIAIAAIFVVIQHLILWYLMHHENMGVSSCYIHISMAYYLIEYPLF
                     VLGYFTPSEDTDAMTNILIFSTAALLSGIIFGAAFLSVARTLRKDSSLRKHMIIAAYG
                     FVLFYIAGSASVAQAAYPPYGIVSVSFIGLSCYLIYVGLYSSAVTVSQDTTLRLSIRK
                     SITDQTKFLDSMGSAHTEQELQSTVLKIAKKHADVLTEKTGVEASMTEGDIKEYMAMV
                     MYEIHKS"
BASE COUNT          864 a          432 c          464 g          821 t
ORIGIN      
        1 cgaaagatat tacgagattc atgacaaaaa gattctcaat ctagatgatt aataatatat
       61 gtctagagtt agcagctgaa atagcgttac tccgttatat aacaacggct gcggcacaaa
      121 caaaattact agctttatcg cagaacattt ttttaaacta attcaactcg atatgatttc
      181 atataaatat ttggatatct tgagatattc ctagatatgt cttaaagcta ttcttattga
      241 ctatacagaa caatgtaatg cccgtattat ctatttagat acatgaattt ctccacttca
      301 ttctatcctt cggttacagc ataacacaaa aagatggcga tcttaacaat atatttctat
      361 gtatcattta ttaattaata ggcatgagaa gatcgggtaa taatggaccc cgaaaatgga
      421 aatgagctag aggctaaaga aataattctg ggagaaatac aaaatgtacg tgataatcct
      481 cccaaagtta gacaagatgg ttgtgccgca tgtcatgttt tattcacttt aattgataag
      541 atgcaaataa gtgaatcacg cgcttccgat ctgttatctc agatcctttt tcatgatcaa
      601 caattgaatg attcttttat agatatggtt gaaaatattc atatgaaacg aaggaatatg
      661 gctattccat ttgcattaaa aaatcgtgat gcaaaagacc gtcatattga atcaaacttt
      721 aagaactttc tagaagagat atcatctgat ttcataaact atggacatga tcttgttctt
      781 cgcaaattgg tgatttctgc gattgcttta gagatcgcgc agaatattgg tatcgattat
      841 catgcagcta ctgaagaact ttattattat atgagaaaaa atgatgatcg tacaaatgcg
      901 ctattattgg aatttaatga tcgattctat aaaaatataa aaagtaagtg atcttggtta
      961 taggtggatt acaaatgcct ttaaatgcgc gactttaggt ttaatacaat atttgaaagt
     1021 atgataatac tatgaaatag aatatatgcg gctctgccaa gccctatttg gtacatacct
     1081 atggcgatgt gccattgatc ggcgtctcca ttgtaatgca ctagtaactg agggtcagcc
     1141 atcatcgtaa tactgcacga ttcacccggc tgcagtcttt acaggaacgg gtgttagttt
     1201 taaagcattt attttgctag aatgcagctt ttttatacaa atactggcat tcagaagata
     1261 gtgactaacg gaagtattgg agaaccagca gatgagtaga atggatatga tgcatgtcat
     1321 gatttatgga tttcatacat caccattgcc atatactctt tgatgtcacc ctccgtcatc
     1381 gaagcttcaa ctccagtctt ttcagttaat acatctgcat gcttctttgc aatctttaaa
     1441 acagttgatt gtaactcttg ttctgtatga gctgatccca tactatccaa aaactttgtt
     1501 tgatcagtta tagactttct aatggagagt cgcagtgtag tatcttgaga tacagtaact
     1561 gctgaagagt ataggcctac gtatattaaa tagcaagata atccgataaa cgagacggaa
     1621 acaattccat agggtggata cgccgcctga gcaacactag cagagcctgc aatgtaaaaa
     1681 agaacaaatc cataagctgc aattatcata tgctttctga gactactatc ttttcgtagg
     1741 gttcttgcaa cggataagaa tgctgcccca aatatgattc ctgacagaag tgcagccgtt
     1801 gaaaaaataa gaatattcgt catcgcatca gtatcttccg atggagtaaa gtatcctaag
     1861 acaaaaagag ggtactcaat aagatagtat gccatagata tatggatata gcaacttgac
     1921 acccccatat tttcatggtg cataagatac cataaaatta gatgctgtat tacaacaaat
     1981 attgccgcaa tagcgatgaa tatagtgatc ccagtatctg atgacaattg ttgaggtata
     2041 aaatcagcaa tatagccaaa ttgtgaatca attgtgatgg taattatcat aactagaatt
     2101 gtgaaaagtt tcttatcgct ggctagtccc aaatatgcag tagttagttg gagcttgatt
     2161 tggcgcatta gtttattaaa tttgtgttaa taggttgaaa tagaaacgtt tcagttgatg
     2221 tacaatttta ggcactccga tcatgagggt acaagcaatc attttgtaat tggtaatgtc
     2281 gtagacaaat taaccatctg caaaaccgct actcactccg atttggtcaa ttatttgtcc
     2341 attattttag ctgtttgttt ttgatatcga taaccttacc taaatctgac aattgagcat
     2401 tccataatac ttatgcatca gagccaaaag aaggatctgc aatgtaacga cattatagag
     2461 ctgcattcaa aattcatcga attaatgtat tcttctaaga gttatagctt cttactacga
     2521 tgtgtataat tagcaaaagt aactaatcgt atattacaag acttatcaag tccgattgaa
     2581 t
//
LOCUS       DASPFX010000233         2115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1952242, whole genome shotgun sequence.
ACCESSION   DASPFX010000233 DASPFX010000000
VERSION     DASPFX010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1952242"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1731
                     /gene="glmS"
                     /locus_tag="VD694_05080"
     CDS             <1..1731
                     /gene="glmS"
                     /locus_tag="VD694_05080"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HXW12114.1"
                     /translation="HASTVLIEGLKKMEYRGYDSVGIATIKSGKLLLRKGVGKVAEVN
                     KSLRLDELPGKLGIGHTRWATHGGIVDSNAHPHLACNSTIAVVHNGIIENYDELKDEL
                     YRSGHEFSSETDSEVIAHLLEEYFEITGDISLSMIFTCKRLVGSFAFVAVFNSSTLCG
                     ARYDEPLIVGVGNDDYFLSSDILGFLNHTDRAIFLDNRDIVVINDSDISFFNFDGDRI
                     SRKITQVAWELGDADKGKYSHYTLKEIHEQHETIVKSMDQDKKNLEKFCEIITSANNV
                     FITGSGTSYHSALLAKQIFSKSKIHVEPIVSSEFQYSEDLLDNNSVLLAISQSGETAD
                     VIHSVKSAKSRGSKVLSIVNIPTSSLARLSEAFLEVNCGPEIGVAATKSFTSQIALLY
                     YVADLIGKKSNGIFASKDVLTKAVNQVLELDSQIERVANQIKESKDVYILGRSLHFPI
                     CLEGALKIKELSYIHAEGMAAGELKHGPLALIDNNSIVIVIHPNDSTYVDTLSNIHTI
                     KSRGAKIVGISNKKDEIYDYQITIPTISESLYPLIEVIPLQLLAYYLSICKNANPDYP
                     RNLAKSVTVK"
     gene            complement(1782..>2115)
                     /locus_tag="VD694_05085"
     CDS             complement(1782..>2115)
                     /locus_tag="VD694_05085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HXW12115.1"
                     /translation="VLALMASLKVPFDKICIGTTSYVTQDKNSDLDFLVRSISSDIPI
                     LSVNPGLDKSTKNGLLMYDKGVVKEGVGSGGALLTLLLKLNRSLDKDIFLGKLEDEYE
                     KNIENIVV"
BASE COUNT          697 a          365 c          408 g          645 t
ORIGIN      
        1 cacgcttcta ccgtattaat agaaggtctc aaaaagatgg aatatagagg atacgatagt
       61 gttggtattg cgacaattaa gtccggtaaa ctcttgttac gtaaaggagt tggtaaggtc
      121 gctgaagtca acaagtcttt aagacttgat gaattacccg gaaaattagg gattgggcat
      181 acacgttggg caacgcatgg tggtatcgtt gactctaacg cacatcctca tcttgcgtgc
      241 aattcgacaa ttgctgttgt ccataatggc ataattgaaa attacgatga attgaaagat
      301 gaactttata gatctggtca tgaatttagt agtgaaaccg acagcgaagt cattgctcac
      361 ctgttagagg aatactttga aatcactgga gatatcagtt tatcaatgat ctttacttgc
      421 aaacgactag tgggttcttt tgcgtttgtg gctgtattta actcatcaac tttatgcggt
      481 gcccgctatg atgaaccgct gatagtagga gttggtaacg atgactattt tctgtctagt
      541 gacattttgg gcttcctaaa tcacacagat cgtgcgattt ttttggacaa tcgtgacatt
      601 gttgtaatta atgatagtga tatctctttt ttcaattttg atggtgatag aatttcaaga
      661 aaaataacac aagttgcatg ggagttaggt gatgctgaca aaggaaaata ttcacattat
      721 accttgaagg aaattcatga acagcacgag acaatagtaa agagcatgga tcaggacaag
      781 aaaaatttgg aaaaattctg cgaaatcatt acaagcgcca acaatgtctt tattactgga
      841 agtggaacaa gttaccattc agcattactc gcaaaacaaa ttttctcgaa atcaaaaatt
      901 cacgttgaac ccatagtgtc aagtgaattt caatattcgg aagatttact agacaataat
      961 tcagttctat tggcaatatc tcagagcggt gaaactgctg atgtaataca ctctgtaaaa
     1021 tctgcaaaga gtaggggatc taaggtgctg tcaatagtca atatccctac ttcttcactt
     1081 gctagattga gtgaggcttt tctagaggtt aactgtggtc cggaaatagg tgttgctgct
     1141 accaagagtt ttacaagtca gattgcgctg ttatactacg ttgcagactt gataggcaaa
     1201 aaatcaaacg ggatattcgc tagtaaggat gttttaacca aagcagtgaa tcaagtcttg
     1261 gaattagatt cgcagattga aagagttgca aatcaaatta aagaatcaaa ggatgtgtat
     1321 attcttggca gatctctaca tttcccaata tgtttggaag gggcattaaa aattaaggaa
     1381 ttgtcatata tccatgccga aggaatggct gcaggtgaat taaaacatgg tcctctggca
     1441 ctgatagata acaatagcat cgtaattgtc attcatccga atgattctac ttatgtagat
     1501 acattgtcaa acattcatac tataaaatca agaggcgcaa aaatagttgg aatttcaaac
     1561 aagaaggacg aaatatatga ttatcaaatt accataccta caataagcga atcactctat
     1621 cctctgatcg aagtaattcc gctgcagctt ttggcatatt atttatccat ttgtaaaaat
     1681 gcaaaccctg attacccacg taaccttgcg aaatctgtta cagtaaaata ataatggtct
     1741 aattgacttg aaaacgaaca tgagatttgc gaattaattt ttcatacaac gatattttca
     1801 atattttttt catactcgtc ttccaatttt cccaaaaaaa tatccttgtc tagcgatcga
     1861 tttaatttca atagcaatgt caatagcgcc cctcctgatc ctaccccttc ttttacaaca
     1921 cccttatcgt acattagtaa accgtttttt gtagatttgt ctaggcccgg atttaccgat
     1981 aaaataggta tatctgaaga aatggatctt accagaaaat ctaaatcaga attcttatct
     2041 tgagtaacat aagaagtggt ccctatgcag attttatcaa aaggaacttt cagagaagcc
     2101 atgagtgcaa gaact
//
LOCUS       DASPFX010000234         3471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_101527, whole genome shotgun sequence.
ACCESSION   DASPFX010000234 DASPFX010000000
VERSION     DASPFX010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3471
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101527"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..613
                     /locus_tag="VD694_05090"
     CDS             <1..613
                     /locus_tag="VD694_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HXW12116.1"
                     /translation="FYFIVKWEFNFIDSLGKAAALSTDQIDVENGERYKIEFVDSDGE
                     KKYPIILHNSPSGAVERVIFALLEKADANGIKGKIPALPLWLSHTQVRIIPVATKHTE
                     FSEKVFDELNKNNIRADIDDRELSVAKKIREAESEWIHFTLVIGDKEVDGNELVVRER
                     LSKSQYGITLDNLTNKIKQEISDKPYMPLNLPVYLSKRPLIMA"
     gene            692..901
                     /locus_tag="VD694_05095"
     CDS             692..901
                     /locus_tag="VD694_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12117.1"
                     /translation="MGRVEKGESCGVSGCSEPALRSISGSKASMASGLEVNTSNKRVY
                     LCRQHYKEWKKATKEDRDNERARWG"
     gene            complement(954..1904)
                     /gene="speB"
                     /locus_tag="VD694_05100"
     CDS             complement(954..1904)
                     /gene="speB"
                     /locus_tag="VD694_05100"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HXW12118.1"
                     /translation="MTSILDLLDTLFITPERTKAGCSFGDIDMKLSFNEADIVFFGIP
                     LELTTSFGKGTSRGPEAIRSTSGRQIETYVYDEKKDIKEIAKIFDLGDIKIPHEKDGK
                     IDSVFSFLNEHVPPLIEELSRTKKKPFVLGGEHTISYFCFKGISATQPLLIHFDAHRD
                     LKPEYEGLKLCHTTPFYRLIEEGYIHGKDIIQIGIRQADKEENYFAEKNDIKTFDPWE
                     IKNNIEHITEYLHKVTNNRNIYISFDIDVYDLPYVPCTGTPEPFGLDPFEILKILKSI
                     NDSANLVGMDLVEVSLKNDDYREGALATQTLLRIIPRNYV"
     gene            complement(1953..>3471)
                     /locus_tag="VD694_05105"
     CDS             complement(1953..>3471)
                     /locus_tag="VD694_05105"
                     /inference="COORDINATES: protein motif:HMM:NF012364.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type B DNA-directed DNA polymerase"
                     /protein_id="HXW12119.1"
                     /translation="NISDLPIQKLAQYCLKDTELTFRLTSFNDNLLLKLLFVIARISR
                     LSVEDLSRVGVNQWIRGMLFYEHRKINALIPQSDELRFKGQASTEAIIKEKKYRGGLV
                     VEPTPGIHFNVSVVDFASLYPSIIKVHNLSYETVNCPHDSCSQDPDQKIINTDYWICK
                     KNKGITSLLIGSLRDLRVNYYKQLSKDKTISPEERQLYTVVSQAIKVILNASYGVMGA
                     EIFPLYCLPVADATAAIGRSIITKTIDKCKESGISVVYGDTDSLFLRNPSEGNVDEIS
                     KWAKTTQGVDLELDKEYRYVVFNNLKKNYLGVLKDGTVDVKGLTGKKSHTPPFIRKAF
                     YSMLDILGKVNTEKDFDTAREKIIELIKDSAKKLELDKYPLEDLSFNVMVNKSPEKYG
                     KRTSENLKVTSIDGHGSTTNPMKGIPQHIKAAMQFSENERQIKAGDIISYVKTKTAEG
                     VKPVELANHKDIDTEKYLEAMESTFDQMLTSLDVNFKSIIGKPRQSNLDELFWSN"
BASE COUNT         1056 a          630 c          632 g         1153 t
ORIGIN      
        1 tttttatttc attgtaaaat gggaatttaa tttcattgac agcttaggaa aggctgcagc
       61 gctttcaact gaccagatag atgttgaaaa tggtgaaaga tacaagattg aatttgttga
      121 tagcgatggt gagaaaaaat atccaattat tttacataac tctcccagtg gagctgtaga
      181 gcgtgtgata tttgccttgt tggaaaaagc tgatgcaaat ggcatcaagg gaaagattcc
      241 cgcattgcca ttatggctat cacacaccca ggtcagaata attcctgtag ctacaaaaca
      301 cacagaattc agtgagaaag tttttgatga attgaacaag aataatatca gggccgacat
      361 tgatgacaga gaactctccg ttgcaaaaaa aattagagaa gcagaatctg aatggattca
      421 tttcactctg gtgattggag acaaggaagt cgacggaaat gaattggttg ttagagaaag
      481 actatcaaag tcgcaatacg gcataacctt agataatttg acaaataaaa ttaaacaaga
      541 aatttctgac aagccctaca tgccactaaa cctccctgtc tatctgtcaa aacgaccgct
      601 aatcatggca taattagaaa aaagcatagc aacccagaga taaattttca ttctttaatg
      661 tttttatatt tcgtaactag atcccattca aatgggtaga gttgagaaag gagaaagctg
      721 tggtgtaagt ggatgttcag aacctgcatt aagatccatt agtggaagta aggcgagtat
      781 ggcatcaggt ttggaagtaa atacttcaaa caaaagagta tacctatgca gacagcacta
      841 taaagagtgg aaaaaagcaa ccaaggaaga tagagataac gaaagagcaa gatggggcta
      901 gtcaattatc aattagatta gataattgaa tttatcataa cgaaaatatc tattcaaacg
      961 tagtttcttg ggattatcct tagaagagtt tgtgttgcaa gcgctccttc cctgtagtca
     1021 tcatttttca aagacacctc tacaaggtcc attcctacca gatttgcaga atcgttaata
     1081 ctttttaata ttttcaatat ttcaaatgga tccagtccaa atggctctgg cgttcctgta
     1141 caaggaacat agggcaaatc ataaacgtca atatcaaatg atatgtaaat atttctattg
     1201 ttagtaactt tatgcagata ttcagtaata tgttcaatat tattttttat ttcccacgga
     1261 tcaaatgttt ttatatcgtt tttttcggca aaataatttt cttctttgtc tgcctgtctg
     1321 atacctatct gtatgatgtc tttaccgtgg atgtaacctt cttctatcaa cctataaaat
     1381 ggggtggtat gacatagctt caatccttcg tattcgggtt ttagatcccg atgtgcatca
     1441 aaatgaatca gcagaggttg agttgctgaa atacccttga aacaaaagta ggagatagtg
     1501 tgctctccac caagtacaaa tggtttcttt tttgttcggg aaagttcctc tatcaacgga
     1561 ggaacatgtt catttaaaaa tgaaaaaact gaatctattt tgccgtcttt ttcgtgtggt
     1621 atcttgatat cacctaaatc aaaaattttt gctatttcct tgatgtcttt tttttcatca
     1681 taaacatagg tttctatttg acggccagaa gtactcctga ttgcttctgg acccctgcta
     1741 gttccttttc caaacgatgt tgtaagttcc aatggaattc caaaaaacac aatgtcagct
     1801 tcattaaatg aaagtttcat gtcaatgtca ccaaaagaac agccagcttt ggttctttca
     1861 ggggtaatga acaaagtatc caaaagatcc aaaatgcttg tcaataccta gtcaaatcct
     1921 atttagggta ttgcaaattc tagatgagat tgctaatttg accaaaataa ttcatccagg
     1981 ttgctctgtc ttggtttgcc aatgatagat ttgaagttta catccagtga tgttagcatt
     2041 tgatcaaaag tagattccat cgcctccaag tatttttcag tatctatatc cttgtgatta
     2101 gccagttcca ctggtttgac cccttcagca gtctttgtct ttacatatga aattatgtct
     2161 ccagccttta tctgcctttc attttctgag aattgcattg cggcttttat atgctgagga
     2221 atacccttca taggattggt tgttgaacca tgtccgtcaa tggatgttac tttcaagttt
     2281 tcagaagtcc ttttgccgta tttttctgga gatttgttta ccataacatt gaatgaaagg
     2341 tcctctagag gatatttatc taactctaat ttttttgcgc tatcctttat aagttctata
     2401 attttctctc tagctgtatc aaaatctttt tcagtgttaa ccttaccaag aatatccaac
     2461 atactgtaga atgcttttct aatgaaaggt ggagtgtgag atttcttacc cgttagcccc
     2521 tttacatcta cggtaccatc tttgaggacc ccaagataat ttttcttgag attattgaaa
     2581 acgacgtagc gatattcctt gtccagctcc aagtctactc cttgagttgt ttttgcccat
     2641 tttgaaattt catctacatt accttctgaa gggtttctta aaaataatga atccgtatcg
     2701 ccatagacaa ccgaaattcc cgattctttg catttgtcta ttgtttttgt aattatactt
     2761 cttccaatag ctgcagtagc atcagccaca ggaagacagt aaagtggaaa tatctcagct
     2821 cccattactc cgtaactcgc gttaagaatg actttaattg cctgacttac cacagtatag
     2881 agttgtcgtt cttcagggga gattgtttta tcttttgata gttgtttata ataattaact
     2941 cgaagatctc gaagtgatcc gattaggaga gaagttattc ctttgttttt cttgcaaatc
     3001 caataatcag tattaatgat tttttgatcc ggatcctgac tgcaagaatc gtggggacag
     3061 tttacagttt catatgatag gttatgaacc ttaatgatac ttggatacag actggcaaaa
     3121 tcgacaacgg agacattaaa gtggattccg ggcgtgggtt ctacaacaag acctccccta
     3181 tacttttttt cttttattat tgcctctgtt gatgcctgac ctttaaatcg cagttcatca
     3241 ctctgaggaa tcaatgcatt aatttttctg tgttcataaa atagcattcc ccttatccac
     3301 tggttgacac caactctgga aagatcttcg acagaaagtc tagatattct ggcaattaca
     3361 aacaataatt tcagtaatag attgtcattg aagcttgtta gcctaaaggt cagttcggta
     3421 tcttttagac agtactgagc aagcttttga atcggcaggt cacttatgtt a
//
LOCUS       DASPFX010000235         3475 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_821145, whole genome shotgun sequence.
ACCESSION   DASPFX010000235 DASPFX010000000
VERSION     DASPFX010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3475
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_821145"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1188
                     /locus_tag="VD694_05110"
     CDS             <1..1188
                     /locus_tag="VD694_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW12120.1"
                     /translation="ASKYAAEAIRLDSEGSNGLAISAYQRAVEALVKLVQIYPDYKLN
                     KIYMERANSYQNRIKALQVSNTLCDSDISKLGSFDQKPTNSILNNMQSAKKRNEPNSG
                     CSLYFEELLMTDKPKVSWNEVIGLDDAKRAMRESIVYPTMRPDLLPLGWARGILLFGP
                     PGCGKTLLAAAAAAEIEGYFINVDAASMMSKWLGEAEKNVSKLFTMARKLHDSEGVPV
                     LIFVDEIDSLLGNRNSEVGGEVRVKNQFLTEMDGINGKSRESKLYVIGATNKPWSLEA
                     GFLRRFQKRIYVSLPNRESRIHLFDQYTKMLQMESSLKIEDLAKLSDGYSGSDVKDIC
                     QSVQLRVVDELFQSGKGLDSDSSTRSITESDFREILKMRKPSVSMDMIRAYSRWSEQF
                     KAL"
     gene            complement(1191..1724)
                     /gene="ppa"
                     /locus_tag="VD694_05115"
     CDS             complement(1191..1724)
                     /gene="ppa"
                     /locus_tag="VD694_05115"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF002317.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HXW12121.1"
                     /translation="MTTHQGIGSIKQSPDQCTAMIEIPKGSNIKYEYDAESGFIFVDR
                     KLFTAMYYPCNYGFLPNTLEKDGDPVDVLVLGETPLAPLSLIKVMPVGVLHTEDEEGQ
                     DSKIVAIPTSKIDPSFSNVKDIEDVPQHLKDQIKHFFEHYKELEKGKYVKVSGWEGKD
                     PALRKISEAVSSFHKVN"
     gene            1882..>3475
                     /locus_tag="VD694_05120"
     CDS             1882..>3475
                     /locus_tag="VD694_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HXW12122.1"
                     /translation="MELDGKYDPKEIEFQINSYLDKIDKKSLIARELSAHEKTLGFVE
                     GPPTLNGEPHIGHLRGRIIKDLWFRYKTLQKYSVIFRAGWDTQGLPVELQAEKNLGLT
                     GSKAENIKKVGITKIVEACKDLIKKNSEKWIKVDALLGMSFDYENAYWTFRDNYIERE
                     WQVLKKASELGILREWFRVVAYCPSCQTSLSNAEVNQGYKILEDPSFYYKMRLKEEDT
                     FLVVWTTMPFTLVTDELIGVNPEAEYAYISINTEKWIVGHDRLNDLMTELRIQDFTIE
                     RIIKGSELEGKKYVHPLLSMIPGLKELSDDNKIHFVVAENFVDASTGSGIVHLSPANG
                     QEDFDIAVKRNVPIFVPINDKVEFTDKAGIFSGKFVRDADSLVVEKMKETDAYLKLGR
                     IKHQYPTCWRSNHKVVWLARREYFYMIDKLENKPLNAVSSVNFFFDSPKNRFVEIIKE
                     QVPWCISRERVWGTPLPIWSCVQCGMKEPLFSRSEIIKRATKLPDGEHFELHRPWIDN
                     VVINCSKCNIAMIREPFVLDTWH"
BASE COUNT         1146 a          566 c          743 g         1020 t
ORIGIN      
        1 gctagtaaat atgctgctga ggcaattagg ttggattcag aaggttccaa tggactggca
       61 attagcgctt atcagagggc tgtagaagcc ttagtcaagt tagtacaaat ctatcctgac
      121 tacaagttga acaaaattta catggagcga gcaaattcct atcaaaatag aataaaagct
      181 ctgcaagtgt ccaacacatt atgtgattct gatattagta aattaggaag ctttgatcag
      241 aaacctacga attctatcct gaataacatg caatcggcaa agaagcgaaa tgagccaaat
      301 tcaggatgta gtttgtactt tgaagaactt ttgatgacag ataaaccaaa ggtttcttgg
      361 aatgaggtta ttggtctgga tgacgcaaag agagcaatga gggaatccat agtatatcct
      421 actatgagac ctgatctact tccactgggc tgggcaagag gaatcttact atttggacct
      481 cctggctgcg ggaagacatt gcttgccgct gcagctgcgg ctgaaatcga aggttatttc
      541 ataaatgttg atgcagcttc aatgatgagt aaatggttag gcgaagcaga aaaaaatgtt
      601 tcaaaattgt ttaccatggc acgtaaattg catgatagtg agggtgttcc agttctcata
      661 tttgtagatg aaatagattc acttttgggt aatagaaata gcgaggtagg aggagaagtt
      721 agagtgaaga atcagtttct tactgaaatg gatggtatta atggaaaatc tagagaatca
      781 aaactatacg tcattggtgc aaccaataaa ccctggagtt tggaagcagg atttctgaga
      841 agatttcaaa aaaggatcta tgtttctctt cctaacagag aatccagaat tcatcttttc
      901 gatcagtaca caaaaatgtt acaaatggaa tcttcgctaa aaatagaaga cctggcaaag
      961 ttaagtgatg gctatagtgg gagtgatgtc aaagatatct gccaatctgt tcaactacgt
     1021 gtagtagatg aattgtttca aagtggaaaa ggattggata gtgattcaag tactcgatcc
     1081 ataaccgaat ctgattttag agagatacta aaaatgagga aacccagcgt aagcatggat
     1141 atgattcggg cctactcaag atggagcgag caattcaagg ccctctaatc ctagtttact
     1201 ttatgaaagc tacttactgc ctcagatatc tttcttaatg cagggtcttt gccttcccat
     1261 cctgatacct tcacatattt tcctttttcc agttccttgt agtgttcaaa gaaatgtttt
     1321 atctggtctt ttagatgttg tggcacatct tcaatatctt taacgtttga gaaactagga
     1381 tcaattttgg atgttgggat agcaactatt tttgaatcct gtccttcttc atcctcggtg
     1441 tgtagcacgc ctacgggcat tacttttatc agagataacg gcgctagtgg agtctcccct
     1501 aatactagaa catcaactgg atctccgtct ttctcaagtg tgttgggcaa gaatccataa
     1561 ttacaaggat aatacattgc agtaaataat ttcctgtcta caaaaataaa accactttca
     1621 gcatcatact cgtattttat attgctgccc tttgggattt caatcatcgc tgtgcattga
     1681 tcaggtgact gcttgataga accaattcct tgatgtgttg tcatgcattc tacttattag
     1741 ccgctattta tattcgaaaa ggttctggat ggattaattg gatttaccat ttagaataac
     1801 tacagatttt caaataagga caaatttgga cagaaatttg ataaaattat aaaagagaaa
     1861 atagaactga gattcgcatt aatggaatta gatggtaagt atgacccaaa ggaaattgaa
     1921 tttcaaatta actcatatct ggataaaatt gataagaaat cattaatagc cagagagcta
     1981 tcagcacatg aaaaaacact gggctttgtt gaaggccctc cgacactaaa tggcgagcca
     2041 catataggtc atcttcgagg acgtataatc aaagatcttt ggttcagata caagacttta
     2101 caaaaatata gcgttatctt ccgcgcaggc tgggacaccc aagggctacc agtggaactc
     2161 caggcagaaa aaaatttagg attaactggg agtaaggcag aaaatatcaa gaaggtaggc
     2221 atcacaaaaa tagtagaagc atgcaaagat ctaattaaaa aaaattcaga aaaatggatc
     2281 aaggttgatg ctttgcttgg gatgtccttt gattatgaaa atgcatactg gacttttcgg
     2341 gataattata tcgaaaggga atggcaggta cttaagaaag catcggaact gggaattctg
     2401 agagaatggt ttagagtagt agcatactgt ccttcctgtc aaacatcatt gagtaatgca
     2461 gaggttaatc agggctataa aattctggaa gatccatctt tttattacaa aatgaggcta
     2521 aaagaagagg atacttttct tgtagtgtgg accacaatgc catttacatt agtaacggat
     2581 gaattaattg gtgttaatcc ggaagcggaa tatgcctata tttcaattaa taccgaaaaa
     2641 tggattgtag gacatgatag gctaaatgat ttgatgacgg aactcagaat tcaagatttt
     2701 actattgaga ggattataaa gggatcagaa ttggaaggaa aaaaatacgt tcacccatta
     2761 ttatcaatga tacctggact caaggaactt agtgatgaca ataaaataca ttttgtagtc
     2821 gctgaaaatt tcgttgatgc cagcactggt agtggaattg ttcatttgtc accagcaaac
     2881 ggtcaggagg atttcgacat tgctgtcaag cgaaatgttc cgatttttgt accaattaac
     2941 gataaagtgg aatttacaga caaggcaggt atctttagtg gaaaatttgt acgcgatgcc
     3001 gatagtttgg ttgttgaaaa aatgaaggaa acagatgctt acctaaagtt agggagaatc
     3061 aagcatcagt atccaacttg ttggcgttca aaccacaagg ttgtctggct tgctagacgc
     3121 gaatattttt acatgataga taaactcgaa aacaagcccc tgaatgctgt ctcaagtgta
     3181 aatttctttt ttgattctcc aaaaaataga tttgttgaaa taatcaagga acaggtacct
     3241 tggtgtatct cacgagaaag agtatgggga actcctcttc ctatatggag ttgtgttcaa
     3301 tgtggtatga aagaacctct cttttcaaga agtgaaatta tcaagagggc tacaaagttg
     3361 cccgacggag aacattttga attgcatcga ccttggattg ataatgttgt gattaattgt
     3421 tcaaaatgta acatcgctat gattagagag ccattcgttc ttgacacgtg gcata
//
LOCUS       DASPFX010000236         4136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1966051, whole genome shotgun sequence.
ACCESSION   DASPFX010000236 DASPFX010000000
VERSION     DASPFX010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1966051"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..603
                     /locus_tag="VD694_05125"
     CDS             <1..603
                     /locus_tag="VD694_05125"
                     /inference="COORDINATES: protein motif:HMM:NF014064.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HXW12123.1"
                     /translation="ETDDVNQVENSHDLLDNPSFKLEYAKILELKDVGMGERVCVDTV
                     SMMDMGEGMLIGSRSNFMFLVHNESVGSSFTSPRPFRVNAGAVYCYTAMSDGTTKYLS
                     ELEAGVEILVVSKDGKSRKSTVGRSKIESRPMKLVKAQIDDSSGTVILQNAETIRLIS
                     KDNKLVSVTDLKVGDEVLAYSRSSSGRHFGMPVEEFILEK"
     gene            1045..1971
                     /locus_tag="VD694_05130"
     CDS             1045..1971
                     /locus_tag="VD694_05130"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HXW12124.1"
                     /translation="MFIFFKYAEYGLIIEQNIIPMLLEIQNSIIQGNCRKVLSELPAN
                     LVQLTITSPPYRNAIDYDAHVEKNGYYRGKTKKETGEYLEEMVQIFNEHIYRVTKDGG
                     YCCIVIGNEVVNGTIIPLPHMLLSKLVGPFGNWSLHEEIIWHKVTGGTNRYGSFVINP
                     YPKYFRANIMHEFILVLRKGDVNSGRTNRHDILPATHEEFTKEIANSIWHIAPVPPGH
                     IEHPCPFPEEIPYRLMKLYSYEDDLVIDPFNGSGQTTKVAHNFGRRYIGIDLMNEYVS
                     LAKQRLDKESIHIRPDALIAKWQKVRSHYLTN"
     gene            2260..3660
                     /locus_tag="VD694_05135"
     CDS             2260..3660
                     /locus_tag="VD694_05135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12125.1"
                     /translation="MHHSDYPKLIVIPILPILFLVLLGNVNATPEINNINIISPSNNS
                     QVQIGNLTITGTAVYDSSQPCSIYATWNNSQSLRHPVNIINVGKNYSMWKFTFDPKSH
                     EIIQGPNTLTAILSCVNLSTDNLTMLSSIKVNGLGKLHGENALSNMGSEFSDMVPNTD
                     PSNTQEDSDVFSSNNFELAIPITKENETKYDFLITNEFERINGTNMSSTLQDNNTLTS
                     PIPPSILEIESNQNSDKFLSDSNGTRVVADAGLDQTIYEGTPVILNGSNSKSNNNVIL
                     SYEWKQIPNPNITVGSANTMMWSFIAPYVSTDTTLTFELIVTDNKGVTSTDEVNINVR
                     DGNKTANEAEMTDGFLANESHISKTGSSPEPRNLIIQTLVDENPVSKGEEQVIKIDLI
                     DGNSDDRINNATIRGQILDSSEKIIKEFSEANDTMELSLNIPEKSKTGDYVIKVNATA
                     PGYISSNTETNFKVQK"
     gene            complement(3832..>4136)
                     /locus_tag="VD694_05140"
     CDS             complement(3832..>4136)
                     /locus_tag="VD694_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12126.1"
                     /translation="RDKAFFQNTIDVWIAYCEERGIDWYSVEGYRNFVNYLNSNGLKM
                     QKFPLCIKESGGMYERGKDKAKFLEELSHFSDSDSSAYTLKLSGDVIEKIRSYASK"
BASE COUNT         1432 a          718 c          745 g         1241 t
ORIGIN      
        1 gaaacagatg atgtaaatca agttgagaat tcgcatgact tacttgataa tcctagtttc
       61 aagttagagt atgcaaaaat cctagaatta aaggacgttg gaatgggtga gagggtatgt
      121 gtagatactg tatcgatgat ggacatggga gaagggatgc ttattggcag cagatctaat
      181 ttcatgtttc tagtacacaa cgaatcagta ggctcatcat ttacttcacc caggccattt
      241 agggtaaatg caggagctgt ttactgttat actgccatgt ctgatggaac tacaaaatat
      301 ttgtcggagc ttgaagcggg tgtcgaaatt ctcgttgtta gtaaagacgg aaagagcaga
      361 aaatcgactg ttggaaggtc caagattgaa tcaagaccaa tgaagttggt aaaggctcag
      421 attgacgatt ctagtggaac cgtaattttg caaaatgctg aaacaattag attgatttca
      481 aaggacaata aacttgtatc tgtaactgac ctaaaagttg gggatgaggt cttggcttat
      541 tccagatcat cttctggtag acattttggt atgcccgtag aggaatttat cctggaaaag
      601 taagttaacc cgtttcacta gtatctataa aacagacaag aaattgccta tcatgttgaa
      661 tcttactcta tttgatagtg agacaagtaa aagatagtgc cgcacaattc tccatgacca
      721 gcctgcaaat tgcttgattt gtgtagacga ggtgcaatac gagtgtgaac tatttactac
      781 acatggaaca atcatctatg tccgttaatt agagtaattg agatattatc aaggtggccg
      841 gcccaaactt gccaccagtt atttgatata tcttacaacc atttacgttg ccatatcaat
      901 tcattacaga tgagccttct aaatagtcat ttttaataat tatttttctc aaatttggtt
      961 tatcaggatt cataatctag tgagacatgc ttccttgcat ttgtcgatgt taccagacaa
     1021 ttgcaatcaa tttaatttat catcatgttt atttttttta agtatgcgga atatgggctc
     1081 attatagaac aaaacataat tccaatgtta cttgaaattc aaaattccat tatacagggg
     1141 aactgcagaa aagttctatc agagttacct gcaaatttag tccaacttac aataacttct
     1201 cctccatata gaaacgcaat tgactatgac gcacatgttg agaaaaatgg gtattatcga
     1261 ggaaaaacga aaaaagaaac gggagaatat ctcgaagaaa tggtccaaat ctttaatgaa
     1321 cacatataca gagtaactaa agatggcggt tactgttgta tagtaatagg aaatgaagtt
     1381 gtgaacggaa caattatccc attaccacat atgctacttt ctaaattagt aggacctttt
     1441 ggaaattgga gccttcatga ggagattata tggcacaagg ttacaggagg tacaaataga
     1501 tatggatctt ttgtaatcaa tccatatcca aaatatttta gagctaatat catgcacgaa
     1561 ttcattcttg tcttgagaaa aggagatgta aatagtggaa gaacaaatag acatgatata
     1621 cttccagcaa cgcatgaaga attcacaaaa gagatagcaa attccatatg gcatatcgcg
     1681 cctgttcctc cgggacacat cgaacatcca tgtccatttc cggaagagat tccttatcgt
     1741 ctaatgaagc tctattctta cgaagatgac ttagtgattg atccttttaa cggtagtgga
     1801 caaacaacaa aggtggcaca taattttggt aggcgataca ttggcataga tttaatgaat
     1861 gagtatgtct cattggccaa acagagatta gataaggaat caatacacat aaggccagat
     1921 gccttgatag caaaatggca aaaagtacgg tcacactatc tcacaaacta aaaagacctt
     1981 gcagcgatag caaaactatc ttaaaattaa atttgcctat ttggatgaga acctcaggtt
     2041 ccattactca tatttggtta gatattaatg cgaactaaaa ttcatggtct ctataatttc
     2101 atacctggat ggggaggaga tccatcatca tattggttgt ttcaatgata attgtcctcg
     2161 tgctttaaaa ctagatttgt ctactgtttt ttaattaata cttaacatga attacagcct
     2221 caccttttat agattttcca agagttgtag aataacgaat tgcatcattc agattatccc
     2281 aaacttatcg taattcccat cctgccgata ttattcctag tattgttagg taatgttaat
     2341 gccactcccg aaattaacaa tatcaatatt atatctccat caaacaacag tcaggttcaa
     2401 ataggcaatt tgactattac cggtactgcc gtatatgact ccagccaacc atgttctatt
     2461 tatgctactt ggaataattc tcaatcatta cgacatccag tgaatatcat aaacgttggg
     2521 aagaactatt caatgtggaa attcactttt gatccaaagt ctcatgaaat aattcagggt
     2581 cctaacactc tcacggcaat tctgtcctgt gtgaatttat ctaccgataa tctaacgatg
     2641 ctttcttcga taaaagtcaa tggtcttgga aaattgcatg gcgaaaatgc cttatccaac
     2701 atgggatcag aattttcaga tatggttcca aatactgacc caagtaatac gcaggaagat
     2761 agtgatgttt tttcaagtaa taactttgaa ctagcaatac caattacaaa ggaaaatgaa
     2821 acaaaatatg attttctgat aaccaatgaa tttgaaagaa ttaatgggac taatatgagc
     2881 agcacattac aagataataa tactctaaca agtccaatac ctccctcaat tctggaaatt
     2941 gaatcaaatc aaaattcaga caaattcttg tcagattcta atggtactag agttgtagct
     3001 gatgcaggat tagatcagac gatatacgaa ggtacaccag ttatccttaa tggaagtaac
     3061 agcaagagca acaacaatgt catcctgtct tatgagtgga aacaaatccc taatccgaat
     3121 attacggtag ggagtgcaaa cacaatgatg tggtcgttta ttgctcccta tgtttcaaca
     3181 gacaccacat taacatttga actaattgtt actgataata aaggagtaac ttcaacagat
     3241 gaggtcaaca tcaatgttag ggatggcaat aaaactgcta atgaagcaga aatgaccgat
     3301 ggattcttgg caaatgaaag tcatattagt aaaactggat catctccaga accaagaaat
     3361 ctgataattc aaactctggt agacgagaat cctgtttcta aaggagaaga acaggtcatt
     3421 aaaatagatc taattgatgg taattccgat gacagaatca acaatgctac aataaggggt
     3481 cagatattgg attcgtcaga aaaaataatc aaagagtttt cagaagccaa tgatactatg
     3541 gaattatcac taaatattcc agagaaatca aaaacaggag attatgtgat taaagtgaat
     3601 gctaccgcgc caggatacat ttcatcaaat actgaaacaa actttaaagt gcaaaaatga
     3661 atactctcgt taagagatac aatgttaaat actaacaaaa gcactatatg gattggctat
     3721 agaatattca tgtgttttaa gttgttggta aagatcaatt ctaaataatg tgcttgagga
     3781 tccatcataa taaacataac cctcttcaag ttgttagatt tattgtgtct tctattttga
     3841 tgcatagctc cggattttct caataacatc tccgctcaat tttaaagtat atgcagaaga
     3901 atcgctgtca gaaaaatggg atagttcttc tagaaatttt gccttgtctt tgcctctttc
     3961 atacatgccg ccagattcct tgatacaaag aggaaatttc tgcattttaa gtccattcga
     4021 attcaaataa tttacaaaat tccggtatcc ttcaacacta taccaatcaa ttcccctttc
     4081 ttcacaatat gcaatccaga catcgattgt attttgaaag aaagccttat ccctta
//
LOCUS       DASPFX010000237         3375 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1713770, whole genome shotgun sequence.
ACCESSION   DASPFX010000237 DASPFX010000000
VERSION     DASPFX010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3375
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713770"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1481)
                     /locus_tag="VD694_05145"
     CDS             complement(<1..1481)
                     /locus_tag="VD694_05145"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HXW12127.1"
                     /translation="MGPLLFAIVVFVPVGESGQQQLSFEGKLVLATTVWMGTWWITEA
                     IPIYVTALLPLIIFPSLNITQLGQTSTNYADRVVFLFLGGFLLAKAVEKSNLHSRFAL
                     NMLKVFGTDPKYIVAAFMVVTGFLSAWMSNTATTMLMLPIAAAVISIFHNKNDQHRFA
                     VCLMLSVAYSASLGGMATLIGTPPNAILVSLSKSITDIDISFGQWLLVGLPISGISLM
                     VAWLYMIKFGAKITDIKSIIEEKDLILKKLSALGRINRDEKLVAAVFVATAIAWITRG
                     LSWREVLPMVDDSTIVIIAAVSLFLLPSVFPNVNTNNSRAVNREESSKNTDSRVKTNK
                     KNNNYNMKLLDWNTAVKIPWGVLLLIGGGLALANAFTTTGVDKWIAQQLNFLGGMHYL
                     ILILAIVSITIFSGEIISNTATAALMIPISASLATTLNIDPILLMVPITLATSYGFIM
                     PVGTPPNAIVFASGHVTVAKMARAGLPLDIIGIGIVSALSSFLV"
     gene            1778..2356
                     /locus_tag="VD694_05150"
     CDS             1778..2356
                     /locus_tag="VD694_05150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12128.1"
                     /translation="MTSERNWRDGKIWSNSFQKEQKQELLPTIITREENTREIRKATD
                     NSVREILVHVQADNYNPEKCIQMFTSVDKGNKVPRCLEGKKQESEVIVLSPLIKDAHK
                     DLQIAFAEDLYLYCQANNIGFTELRAVLNTKWNVNVPDLTGGIVHSIKREGSKMLLNY
                     SSKLSGSKIINAISNADHEYKESKKITDDDIH"
     gene            2382..2708
                     /locus_tag="VD694_05155"
     CDS             2382..2708
                     /locus_tag="VD694_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12129.1"
                     /translation="MIKRNNFDNSRELEEPPLVAAIVEPILEGCVSEASLLELTCALQ
                     RLLPTPSDILKKYLFYLIEYDMVAYRGQKGAYVITYNGLSLLFEIKREKTMVKTDSSD
                     IVISLE"
     gene            3010..>3375
                     /locus_tag="VD694_05160"
     CDS             3010..>3375
                     /locus_tag="VD694_05160"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HXW12130.1"
                     /translation="MKSKTQFVVLGAGYAGMTVAVHLDNKLSEKNFQVILVNINSYHE
                     LIQEAHLVAGGFRRPEQVRIPISDLIRDTGIQFIQSGVQKVNASENKVILENSNDINY
                     DFLVVALGSSTKFFGIKNAT"
BASE COUNT         1154 a          614 c          629 g          978 t
ORIGIN      
        1 accaagaaag aagacaatgc gctaacaatt ccgattccta taatatctaa tggaagtcct
       61 gctcttgcca tctttgccac tgttacgtgg ccacttgcaa agacgatcgc atttggagga
      121 gtaccaaccg gcattataaa cccataactt gtagcaagtg ttatcggcac cattagaagt
      181 attggatcta tgttaagagt cgttgcaagc gatgcagata ttgggatcat caatgctgct
      241 gtagctgtat tacttatgat ttcgcctgaa aatattgtta tggatacaat tgcaaggatc
      301 agaattagat aatgcatgcc tcccaggaaa ttaagctgtt gtgctatcca tttatccact
      361 cccgttgttg tgaaggcatt ggctaatgcc agacctcctc ctatcaacaa aagcactccc
      421 catgggattt ttactgcggt attccaatct aataatttca tgttgtaatt attattcttc
      481 ttgttagttt tgacacgaga atcagtattt ttactacttt cttctctatt tactgctcga
      541 gaattattgg tattaacatt cggaaatact gatggtaata aaaataaaga tactgctgct
      601 attattacta tggtggaatc atcgaccata ggcaaaacct ccctccacga taaaccacgg
      661 gtaatccatg ctatcgcagt agcaacgaag accgcagcca ccaatttttc atccctattt
      721 atccttccaa gagctgacag tttcttaagg atcaaatctt tttcttctat aatagacttg
      781 atatctgtaa tttttgctcc aaacttaatc atatacaacc atgcaaccat aagtgaaatt
      841 ccactaatag gcaggcccac caacaaccac tgaccaaaac ttatgtctat atctgttatt
      901 gatttggata aggatacgag gatcgcatta ggaggcgttc ctataagcgt agccattcct
      961 cccaggctcg cagaataggc cacagaaagc ataagacata ctgcaaatct atgctgatca
     1021 tttttgttat gaaatatgga aatgactgca gcagctatag gcagcatgag catagttgtt
     1081 gcagtattac tcatccatgc acttagaaag ccagtcacta ccataaatgc tgctacaatg
     1141 tattttgggt ctgtaccaaa tactttgagc atattgagcg cgaacctgct atgtaaattg
     1201 gatttttcaa cagctttagc caagagaaat ccccctaaga aaagaaatac aaccctatct
     1261 gcataatttg ttgacgtctg tcctagttgt gtaatattaa gagatggaaa gatgataaga
     1321 ggaagcagag ccgttacata aatgggaatg gcttccgtga tccaccacgt acccatccat
     1381 acagttgttg ctaatactag tttgccttca aaagaaagct gttgttgccc cgattctcct
     1441 actggaacaa atacaactat cgcaaataat aatggaccca aaaagagtcc tattttgcca
     1501 accctttttc tcgagatcgt atcttaagac ctccttatta cgatatttaa tacatattaa
     1561 gttgtataca atatagaaca gtatggatag tttttctgcg cagaaaaact atctgtaatg
     1621 gaattgcagg acattggcgt cttaaataac ataactacta atattcttgt gatgccaata
     1681 tcacattata gcaacgaatt ttgggatgct aacgatgact aatctaccag ccaaagtcat
     1741 ttaaatatta ttttcattag gtaaatgtgt gactattttg acttccgaaa gaaactggag
     1801 agatgggaag atatggagta attcctttca aaaagaacaa aaacaggagt tgttaccaac
     1861 tattataaca cgggaagaga acactagaga aatcagaaaa gccacagata actctgtaag
     1921 agaaattctc gtccatgttc aagcagataa ctacaatccc gagaaatgca tacaaatgtt
     1981 cactagtgtt gataagggaa acaaagttcc aagatgtttg gaagggaaaa agcaggagag
     2041 tgaagttatt gtattatcac cactcattaa agacgcgcat aaggaccttc agattgcctt
     2101 tgcagaagat ctctatctct attgtcaagc aaataacata ggctttacag aattaagagc
     2161 tgtactcaat actaaatgga atgtaaatgt tcccgaccta acaggaggaa ttgttcactc
     2221 gataaaaagg gaaggcagca agatgctttt gaattatagt tctaaactga gtggaagtaa
     2281 gatcattaac gctatttcta atgcggatca tgaatataaa gaaagtaaga aaatcactga
     2341 tgatgatatc cattgaaatc ttatggaaaa gaatgaagaa tatgattaaa agaaataact
     2401 tcgataatag ccgagaatta gaggagcccc ctctggtggc agccatagtt gaaccgatct
     2461 tggaaggatg tgttagcgaa gcctcactat tggagcttac ctgtgctcta caaaggctgt
     2521 tgcctacgcc ttctgatata ctaaagaagt atttgtttta cttgatagaa tatgacatgg
     2581 ttgcatacag agggcagaaa ggggcttatg tcataacata taatggattg agtttgttat
     2641 ttgagattaa aagagagaaa acaatggtca aaacagacag ctcagatatt gtaattagtt
     2701 tagaatgaga gtataagaga aaagaaaagc atattttata aataatgtat tcaggcataa
     2761 aatagtctta tcacaatttt ggcatcgcgg caggatcaat gagctactat ctatgtaatg
     2821 attaaaaaaa tcagaactcg aatagtggat ggttttctct ccatgttctc tcaattttag
     2881 tcaaaaacaa cataagaaat aaatcactta aaataaaaga ttattcgctt cacaatataa
     2941 cgattgtaac gaatgaatga atcaatccta gttacaatat tgaaatactc cttttaaccg
     3001 gtcattataa tgaagagcaa aacacaattt gttgttctcg gcgccgggta cgcgggaatg
     3061 acagtggcag ttcaccttga caacaaacta tccgagaaaa attttcaagt gatattagtg
     3121 aatattaact cttatcatga attaatccaa gaggcacatt tagtagcggg tggctttaga
     3181 agaccagaac aagtaagaat tcccatttca gatctaatta gagatactgg catacagttc
     3241 atacaatccg gtgtccagaa agttaatgca tcagagaata aggtaatttt ggaaaattca
     3301 aatgatataa actatgactt tttagtagtc gcgctgggtt cttcaaccaa gttttttgga
     3361 ataaaaaacg caaca
//
LOCUS       DASPFX010000238         3305 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1448533, whole genome shotgun sequence.
ACCESSION   DASPFX010000238 DASPFX010000000
VERSION     DASPFX010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1448533"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..510
                     /locus_tag="VD694_05165"
     CDS             <1..510
                     /locus_tag="VD694_05165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12131.1"
                     /translation="FMVDVKNQDPRVSELIHFYRNSSDSRQKLEFLVQKSSKGILWDS
                     QMQKDYLKFIKVAELHKSKSLETLITRKIRSFDVAFVFTYPLVQSSLFANEVFSNSNA
                     DLVMLFNKHGKVSIRRNTDRISCSKIASFLVEGGGHEFASGGVLKSNPKDFPSCIGEM
                     QQAIIKSLK"
     gene            568..744
                     /locus_tag="VD694_05170"
     CDS             568..744
                     /locus_tag="VD694_05170"
                     /inference="COORDINATES: protein motif:HMM:NF015561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12132.1"
                     /translation="MTFVASENPVGNVIYECMRCGTPVTNEELSKLPEIKCICGFRVF
                     RKARQPIVKQVKAI"
     gene            complement(1134..2345)
                     /locus_tag="VD694_05175"
     CDS             complement(1134..2345)
                     /locus_tag="VD694_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HXW12133.1"
                     /translation="MIRIGLIGKTNTGKTTFFNSATLGNEEIANYPFTTKKPIHGNAH
                     VITLCVHKEFGVQDNPRNSLCKDGWRFIPVELIDLPGLIKGAWEGKGLGNQFLSVAAQ
                     SDVLLHIVDASGSIDASGKIAEAGAGDPIADVSDIEEELVLWYLKLFEGNREKISRMT
                     TTGMDTARAITEIFGGIGVKEWHVKQSILENNMVDRNIHELDSDESRKFISTLREISK
                     PSLIVANKIDLPTAAENFNRLREHNKHMFVIPSSADAELTLRRAQNRGLIKYSPGDEI
                     FDIFENTILNEKQKWALNFIRKDVLGEYLRTGVQFALNIAVFKLLNMNVVYPVSDPNK
                     LSDKKGNVLPDAFLMKNGSTVQDLASDIHTELSKGIVYAVDVRNGLRLPGDYQIKDRD
                     VLSIISTMIKK"
     gene            2558..>3305
                     /locus_tag="VD694_05180"
     CDS             2558..>3305
                     /locus_tag="VD694_05180"
                     /inference="COORDINATES: protein motif:HMM:NF015666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HXW12134.1"
                     /translation="MHIELGSQIRKVLVIGLGQLGLPVAKYVKERGFETFGYDINPIR
                     MQDAEKSFGIKSIEKFDDIDVFILCVSTHDPNDEYTPFVDGLFSLAQKISREAKNGSL
                     VSIESTIPKGTSKKIFEMLNHRLHVAHAPHRWYSLEEDVHGVNQIRVVGGVSDCCLKV
                     ALQFYDSGNEALEFNDDTITEDSHISCRRISLGIPMHPVSEIEIAELTKIIENADRYM
                     QIAFSEDLYLYCQANNVNFAELRDSLNTKWN"
BASE COUNT         1071 a          582 c          588 g         1064 t
ORIGIN      
        1 tttatggtag atgtcaagaa tcaagatcca agagtttctg aattaatcca tttctacagg
       61 aatagttctg attctagaca aaaacttgaa tttctggtac aaaaatcttc aaagggaata
      121 ttgtgggatt cgcaaatgca aaaagactac ctaaaattca ttaaagttgc agaacttcac
      181 aaaagtaaat cattagaaac cttgatcaca agaaaaatcc gatcgtttga cgtcgccttt
      241 gtgtttactt atccccttgt tcaatcaagt ctttttgcta atgaggtatt ttccaactca
      301 aatgctgact tggttatgct atttaacaaa catggaaaag tcagcatacg gagaaatacg
      361 gacaggattt catgtagcaa gatcgcctcc tttctagtcg aaggcggtgg acatgaattt
      421 gcatcaggag gggtgctaaa aagtaatcca aaggattttc cctcatgtat aggcgagatg
      481 cagcaagcaa ttatcaaatc cctaaaatga gtagacatgg acaatattgg aatttacaag
      541 aaaaacaatt aaatttcaat tcaaataatg acttttgtgg ctagtgaaaa tcctgtaggc
      601 aatgtaattt acgagtgtat gaggtgtggc actccagtaa ctaatgaaga actttccaaa
      661 ttacctgaaa taaagtgtat ttgtggattc agagtatttc gaaaggcaag acagccaata
      721 gtcaaacaag taaaggcaat ctaaggtatt cacatctcat tattttaata acttttcaaa
      781 ttagctaacg cttaattgtt agaattgaga ttaatagtta gatgaagata gtctgtccgg
      841 attgtagaaa acctgcagag ctttcagatg atttcagttt tgtaaaatgt cagttctgca
      901 agctagatat gacctatggg gaatacgtaa agtacgttgc ttacagagat gtaagatata
      961 gagatattct aagtgattac aaaaaagagc agtaataata tcaagttacc atagatggta
     1021 tctatattta attctgattt attcgactta tcttatctgg tattacctac ttcataccat
     1081 tttacaataa atgatgataa cgattgccga cagctgtttt caactgataa aatttatttt
     1141 tttatcatcg ttgaaataat tgatagtaca tctctatcct ttatctgata gtctccaggt
     1201 agccttaatc catttcttac atccacggca tagacaatgc ctttggataa ttcagtatgt
     1261 atatcgcttg caagatcctg taccgtagaa ccattcttca tcagaaatgc atcaggaagc
     1321 acgttacctt tcttatcgga caatttgttt ggatctgata ctggatatac tacattcata
     1381 ttcaataact tgaagacagc gatgtttaga gcaaactgta ctcctgttct aagatattca
     1441 cccaatacgt cctttctgat aaagttgagt gcccactttt gtttttcatt aagtatagta
     1501 ttttcaaaaa tatcaaatat ttcatccccg ggagaatatt ttattaggcc tctattctga
     1561 gcccttcgca gtgtaagttc tgcatcggca cttgaaggaa ttacaaacat atgcttattg
     1621 tgttcacgaa gtctattgaa attttccgca gcggttggta aatctatctt gtttgcaact
     1681 attaatgagg gctttgatat ttctctcagt gtggaaatga attttctact ttcatcagaa
     1741 tccaattcgt gaatgttcct atctaccata ttattttcaa gtatagattg ctttacatgc
     1801 cattccttta caccaatacc accaaaaatt tcagttatgg cacgtgcagt gtccattccg
     1861 gtagttgtca tccttgaaat tttttcccta tttccttcga ataatttcag ataccacaga
     1921 accagttcct cttcaatatc ggatacatct gcaataggat ctccggctcc agcttctgca
     1981 atttttcccg atgcgtctat gcttccagat gcatcaacaa tatggagtaa tacgtcagat
     2041 tgagcagcaa ctgataagaa ctgattacca agaccctttc cttcccatgc tcctttaata
     2101 agtcctggaa ggtctatcaa ctctacagga ataaatctcc agccatcttt acacaacgaa
     2161 tttctgggat tgtcctgtac tccaaattcc ttgtgaacac atagggtaat tacatgagca
     2221 ttcccgtgaa ttggtttttt agtggtgaac ggataatttg ctatttcttc atttcccaaa
     2281 gtagcagagt taaagaaggt agtcttgcca gtatttgttt tacctattaa accaattctt
     2341 atcacacatc tattatttgt gcatgattat ttatagctag caagtagctt gtcgaaaaaa
     2401 cgaattattt ctgacgccag aaaccttgat gtgagatctc aactttctac ataaagttct
     2461 atatgaacca aatagaaatt tctatagtga ttaacgtatg ttttattcca tctcaaggct
     2521 ttaataatta tattatgaat cttttatatc agcaaaaatg cacatagaat taggatctca
     2581 aataaggaag gttttagtta ttggtcttgg gcagttgggg cttccagtcg caaaatatgt
     2641 taaagaaagg ggatttgaaa cttttggata tgatataaac cccattagaa tgcaggatgc
     2701 ggaaaaaagt tttggaataa aaagcataga aaagtttgat gatattgatg tttttatcct
     2761 ctgtgtgtca acccatgatc ctaatgatga atacactcct tttgtagatg gtttattctc
     2821 actggctcaa aaaatatcaa gggaggcaaa aaatggctca cttgtttcca tagaaagtac
     2881 aatacccaag ggcacttcaa agaaaatatt tgaaatgctt aaccacagac tacatgttgc
     2941 tcatgcacct catagatggt attcacttga agaggacgta catggtgtga atcaaataag
     3001 agtagtaggt ggtgtaagtg attgttgtct gaaagtggca ctacaattct acgatagtgg
     3061 taacgaagcg cttgaattca atgatgatac tattacagag gatagccata taagttgcag
     3121 aagaatcagc cttggaattc caatgcaccc ggtgtctgaa attgagatag cagaattaac
     3181 caaaataatc gaaaatgcgg atagatacat gcaaattgca ttttctgaag atctttacct
     3241 ctactgtcaa gcaaataatg ttaatttcgc agaattaaga gactctctga atacaaagtg
     3301 gaatg
//
LOCUS       DASPFX010000239         8474 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_384459, whole genome shotgun sequence.
ACCESSION   DASPFX010000239 DASPFX010000000
VERSION     DASPFX010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8474
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384459"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..666
                     /locus_tag="VD694_05185"
     CDS             <1..666
                     /locus_tag="VD694_05185"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HXW12135.1"
                     /translation="FEECIKEAWSETYPQEINIADIGCGTGSAITYLANLKFGKVDYV
                     GLDVSIKIMKLRTQSGEIFPNNWQIRFMRASANINIFKENSLDIVFSASALHHLELES
                     VMEWVSKALKPNGLLILHEPSSGNIFSKIGRKLVKDFHTEGEKPILPKDVKQIAHNHN
                     LNLIYEKGLHYLTGSLQYLMGILRLPIPLSFCVYQVSRLVDSFTTSPSWNYSFIQVYK
                     KIK"
     gene            845..2152
                     /locus_tag="VD694_05190"
     CDS             845..2152
                     /locus_tag="VD694_05190"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW12136.1"
                     /translation="MSFAILSLIVIGNFSVFSYGTHELGIKFGDPVPSMNNPTLSVQE
                     VARGLHLPTRMAFLDTDNILVIEKGNGTVKRIQNGNLVGQPLLDVNVANGYERGMLGL
                     AISKSFGVTYVFLYFTEADSKDGDVALGNRLYRYELVKDKLINPKLLLDLPAIPGPFH
                     NGGAVSIGPDDNVYLSVGDVYGTCEDTLNVNSSCQKTQTRAQNFPKKAEPDGRAGILR
                     ITQDGNAVNGKGILGDKYPLNLYYAYGIRNSFGLDFDPLTGNLWDTENGPLFGDEINL
                     VNPGFNGGWAKVQGIWKPNGTSPGKVSLDPGHLEEFEGRGKYRGPEFTWRYPVGPTAL
                     AFVNSDKLGEQYENDIFVGDVNNGNLYHFDLSEKRTGFVLNGKLSDKVADEKIENKDL
                     ILGHNFGEITDIKVGPDGYVYVLVYSQQYGKILKIIPRQDASQ"
     gene            complement(2325..3233)
                     /locus_tag="VD694_05195"
     CDS             complement(2325..3233)
                     /locus_tag="VD694_05195"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HXW12137.1"
                     /translation="MLTAHIHALLKYRRVYLNYVTVLFHVLRNKYPIEAILKRGNYVL
                     LHNHSEAILVTLMESFGFKTYQIINNKIRLDGIVSKADLRTNIEFYDGVENGDLVSVF
                     LAEHYKFLPVEGNVVIDIGANIGDSCIYFALRGARQIIALEPFPKNFEIAQRNIEVNG
                     FKDKIIMQLAGCAAKVGYIAVDPNYNSNGNSYLREFNEGTKVPLLTLSEILRKYNISS
                     RDVVLKIDCEGCEYQTILSSEDCTLKFFSHILIEYHDGYKNLKEKLEKCDFIVTVTTP
                     LLEQSATSLGKKMSFAGYLYATRKKI"
     gene            complement(3581..5608)
                     /locus_tag="VD694_05200"
     CDS             complement(3581..5608)
                     /locus_tag="VD694_05200"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HXW12138.1"
                     /translation="MLSIPLVLSAYTHLWNPVGFPYPDFDEGIYMRRAMHVLSGQGPQ
                     EVIGSFALYDHPYFGQLFLAGTLGMIGYPNSLTPVIGNVQSIESLYMAPRILMGILAI
                     VDTFLIYAVSQRRYNKTVALIASVLFAVFPFTWLIRSIWLESIQLPFILASIFCAVNV
                     KYSNNEKKSILILLSGVLLGIAIFTKVPAVTMIPVVAYLVLTNSNRNLKSLILCFIPM
                     LLIPMLWPVYSIYEGQFSSWMHGIYGQSHREGVSLLSSITDFFKLDPVIVILGISGLV
                     FAVLKKDFLILLWIVPLLIFLSSAAGTSYFHLLPILPALCIGAARLIDLSKKIAPKKI
                     QWLTPLLIISIAAFGLIFTTVLIGTNVNNSYFKAEAFLTQYLSDAYKLNGSNGKITVV
                     SDPFYLWIPQYVFNLKHDYVPFYMIVSIKTEKVAFVIDRSFFYGLSGNLSGNAILKKI
                     YDSYDAKRQEAIKIGDPMKDGAVVILGERPSTLQGPSANLIGMNNTWKSFNGASVSQD
                     GLLHIRTNSNNSDTKYSGAVLHTQINLKERPLLLNLKYKSESLNGNTTFFVEITEDKN
                     EGKTLRDYVFNTLYTEITEKEKGGMTPWEDLEKTFYEEISKGKEGGKILWNAHLDETS
                     GNFRSETFVFPRLGAIGYPESSKGVPVQVKFYIQTQGTGVNDLIVKQISIS"
     gene            5923..6780
                     /locus_tag="VD694_05205"
     CDS             5923..6780
                     /locus_tag="VD694_05205"
                     /inference="COORDINATES: protein motif:HMM:NF025330.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HXW12139.1"
                     /translation="MPRYEISAEALNGNIYVTGGGLANGTLMDTVEIYDPQQDKWSLA
                     APMPEPRDHTGMSSYNGKLYVVGGFNWHTIPTSTLFIYDLQNDTWKEGPPMPTARAGL
                     TADFINGLLYAVGGSSGDNAGPLNTNEAYDPVKNEWIKKSDMPTARHHHTSAVVDDKL
                     FIFGGRKTYVPSSLTQNEMYDPIQDKWTTEKAMPTKRSGFAAAELNNSIFVIGGEKRP
                     GSYDINERYNVETDSWTLEPPMPTNRMGHDAVDLNNKIYVMGGKASQPVESTTGANEI
                     LYYKGKDAK"
     gene            complement(6799..8193)
                     /locus_tag="VD694_05210"
     CDS             complement(6799..8193)
                     /locus_tag="VD694_05210"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW12140.1"
                     /translation="MKLIFSCVLVLILVTLLVYSEFLGMHDTFVKASTSPEMDKLPQV
                     IKDPDLKVELVFGGLPFSTGMAFLGHDDILVLEKKDGTVRRIVNGEMLNEPLLDLNVA
                     NKGERGLLGIALSKNTDVNKTNVFLFFTESKYNVDDREICKVRNHCTSGNPVGHRLYR
                     YELVNNELMNPQLVLDLPSNPGAAHLGGVITIGPDNNLYVITGDGDSCEFQSCRDNIS
                     GSVVNAKTANVQNGDLPVGRGGIIRVTQDGKAVDDGILGDKYPLNMYYAYGIRNGFGL
                     DFDPVTGNLWDTENGPAFGDEINLVEPGFNSGWIRVQGFWPINNSSLLDDNQTSGYAG
                     KDELSKEPDNLVDFDKHGKYSNPEFSWNLTVGVTSIEFFNSDKLGKQYKNDLFVGEIN
                     WGNVYHFDLKENRTELDLPGPLKDKIAGDFQELQEVVFAKGFGGGITDIETGIDGYMY
                     ILTGNGSLYRIIPS"
BASE COUNT         2692 a         1625 c         1570 g         2587 t
ORIGIN      
        1 ttcgaagaat gcataaaaga agcttggtca gaaacttatc cgcaagagat caatatagct
       61 gacataggat gtggcacagg ttctgcgata acatatttgg ccaatctcaa atttgggaag
      121 gttgattacg ttggtcttga tgtttctata aaaattatga aactacgaac acagagcggt
      181 gaaatttttc ccaacaattg gcagatacga tttatgagag catctgccaa tatcaatata
      241 ttcaaggaga actcacttga catcgttttc tctgcatcgg cgttgcatca tctcgaacta
      301 gaatcagtta tggaatgggt ttcaaaggca ctcaaaccta atgggctcct tattttacac
      361 gaaccgagta gcggtaatat cttttcgaaa attgggcgta aacttgtcaa agatttccat
      421 acagaaggag aaaaaccgat acttccaaag gatgtaaaac agatagctca taatcataat
      481 cttaacctaa tttatgagaa aggtttgcat taccttaccg gttcacttca gtacctcatg
      541 ggtatcctga gacttccaat tccattaagt ttttgtgtct accaagtctc tcgattagtg
      601 gacagtttca ctacatcccc ttcttggaat tacagtttta ttcaagtata taaaaaaata
      661 aaatgagctt tatcacttga atgacgcggc tgcctttgcg aattccaggt atcattctat
      721 ttcagatatc aatgtaattg gagttaaacc aattgttcca tatcatttga aagtataatt
      781 tataaaccat tatttttatg caagggttat cttgagtcgc attcagaaaa attctttgat
      841 tttaatgtcc tttgcgattt tatcactcat agtcattggt aacttttctg ttttctcata
      901 tgggacgcac gagcttggaa ttaagttcgg agatccggtg ccaagtatga ataatcctac
      961 gctaagtgta caagaagtag caagaggatt gcatttgcca acacgcatgg cgttcttgga
     1021 cacggataac attctagtta tagaaaaggg taacggcaca gtaaagagaa tccaaaatgg
     1081 caatttagtt ggacaaccac ttttggatgt taacgttgcc aatggatatg agaggggaat
     1141 gttgggcctt gcaatatcaa agagttttgg agtcacatat gttttcctat attttactga
     1201 ggcagattca aaagatgggg atgtagcatt gggcaatagg ctctatagat atgagcttgt
     1261 aaaagataaa ctaatcaatc cgaaactgct tcttgactta ccggctatcc caggtccatt
     1321 tcacaacgga ggagcagttt ccataggtcc cgatgacaat gtgtatctat ctgttggtga
     1381 cgtttatgga acctgtgagg ataccttaaa tgttaatagc tcttgccaaa aaactcaaac
     1441 cagggcccaa aattttccca aaaaggctga gccagatggt agagccggta tccttagaat
     1501 tacgcaggat ggcaatgcgg taaatgggaa aggaatactt ggagacaaat atccattaaa
     1561 cctttactat gcgtacggaa taagaaatag ttttggcttg gattttgatc cattgactgg
     1621 taacttgtgg gatacggaaa acggtcctct atttggagat gaaattaatt tagttaatcc
     1681 cggatttaac ggaggatggg ctaaggttca ggggatatgg aaaccaaatg gaacatctcc
     1741 aggcaaggtt tcactagacc ctggtcacct agaagaattt gaaggtaggg gaaaatatag
     1801 aggacctgaa tttacgtgga gataccctgt tggtcccact gctctcgctt ttgttaactc
     1861 agataaattg ggcgagcaat atgaaaatga cattttcgta ggagatgtca acaatggaaa
     1921 tctatatcat tttgatctaa gtgagaaaag gacaggattt gttttaaatg gaaaactttc
     1981 agataaagta gcagatgaga aaattgaaaa caaagatctt attcttggac ataattttgg
     2041 agaaatcacc gatattaaag ttgggccaga tggttacgta tatgtccttg tctacagcca
     2101 gcagtatgga aagatactaa agataattcc taggcaggac gcaagtcaat agcatactca
     2161 aattattctt ttaaattgat atcataaact tacgatattg tagaagacgg cacttctatc
     2221 attcaataaa tccattgcta ttgtagttct caagtcatta actatcgtag caacaatata
     2281 cttagattaa aattgtaatg tggccaacga gtacctggat tgttctatat tttttttcgt
     2341 gtagcataaa gatatccagc aaaagacatt tttttgccaa gacttgtcgc tgattgttca
     2401 agtaatggag tggtaactgt gactataaaa tcacattttt caagtttttc tttgagattt
     2461 ttatatccat catgatactc aattagtatg tgactgaaaa atttcagggt acaatcttca
     2521 gatgacagaa ttgtctgata ttcgcatcct tcgcagtcta tctttaatac aacgtctctt
     2581 gaagatatat tgtattttct taatatttca cttaaagtta gtaatggcac ttttgtaccc
     2641 tcattaaatt ctctaaggta gctattgcca ttactgttgt agttcgggtc gacagctatg
     2701 tacccaactt tagcagcaca acctgccagt tgcattatta ttttatcctt gaaaccgttt
     2761 acttcaatgt tcctttgtgc tatctcaaaa tttttaggaa acggctcaag agcaattatc
     2821 tgccttgcac cgcgtaaagc aaagtatata catgaatctc ctatgttggc tccaatatct
     2881 ataacaacgt taccttcaac aggaaggaat ttgtaatgtt cagccagaaa tacgcttact
     2941 aaatcaccat tttcaacgcc atcataaaac tcaatatttg ttctaagatc tgctttcgaa
     3001 acaataccat ccagacgaat tttattattg ataatctggt aggtcttgaa gccaaatgat
     3061 tccatcaagg taacaaggat agcctctgaa tgattatgaa gtaatacata attacctctt
     3121 ttcagaatcg cctcaatagg atatttgttt cgcaaaacgt gaaacagaac cgttacgtag
     3181 ttcagatata ctctcctata cttaagtaat gcatgaatgt gagcagttag caagcttcct
     3241 atatatacac aatatcccct cagtaggtcc acgtttgaaa cattcatgtt gatatttcta
     3301 atcctgttta ttaaagtcat taatgattag aacgattgaa attcttatcg gtgaaaactt
     3361 gcgctagtgt ttcagcagct ttatataaac gaatgggcga ttttgttaat gttgacacga
     3421 aaatttgcag tacttgtgtt agtagttctg ttcagtattg atgctattgt ttgcagagat
     3481 acaatgcaaa aattttcgac cgattttttc agctaaaaag atatgcctgc taaaacgctg
     3541 tcatgacctt acaggcacta tatataaatt tttataaatt ttaactgata ctgatttgct
     3601 ttacaatcaa atcattcacg ccggttcctt gggtttgtat ataaaattta acttgtacgg
     3661 ggactccttt agaagactcc ggatacccta tagctcctaa tcgagggaac acaaaagttt
     3721 cacttctaaa attgccagaa gtttcgtcca ggtgggcatt ccaaagaatt ttgccccctt
     3781 ctttgccctt acttatttct tcatagaatg ttttttcaag atcctcccaa ggtgtcatgc
     3841 cccctttttc cttctcagta atttcagtat acaaagtgtt gaaaacatag tcccgaagcg
     3901 tcttaccttc gttcttatcc tcagtaattt ctacaaaaaa agtagtgttt ccgtttaaag
     3961 attctgattt atatttaaga ttcaaaagaa gagggcgctc ttttagatta atctgtgtat
     4021 gtaaaacagc tccagagtat ttcgtatctg aattattgct attagtccta atatgtagca
     4081 aaccatcttg cgagacacta gctccattaa aagatttcca tgtattgttc atcccgatta
     4141 aatttgcact cggaccttgc aaggtggacg gacgttcacc aagtattact actgccccgt
     4201 ctttcatagg atctccaatc ttaattgctt cttgtctttt tgcgtcatac gaatcataaa
     4261 tcttttttaa tatcgcattt cccgataaat ttccagataa accatagaaa aaactgcggt
     4321 ctatgacaaa agcgaccttt tcggttttta tcgaaactat catgtaaaaa ggaacataat
     4381 catgttttaa attaaataca tactgtggaa tccataaata aaacggatcg gaaactacag
     4441 ttatcttgcc attgcttcca tttagtttgt aagcatcact taagtattga gtcagaaatg
     4501 cttcagcctt aaagtatgaa ttattgacat tggttcctat tagaacagtt gtaaaaatta
     4561 atccaaatgc tgctatgctt attatcaaaa gtggtgttaa ccactgtatt ttcttgggag
     4621 caatcttctt tgaaaggtct atgagtcttg cggctccaat acataatgcg gggagaatgg
     4681 gaagcaagtg aaaatatgat gtccccgccg cggaagagag gaatatcaat aatggcacaa
     4741 tccatagtaa aatcaaaaaa tcttttttta ggacagcaaa aactaggcca gatattccga
     4801 ggattactat aacggggtct agcttaaaaa agtcagttat agaactcaat aatgacacgc
     4861 cctctctatg gctctgaccg tagataccgt gcatccagga agaaaattgt ccttcgtaaa
     4921 tgctatatac tggccatagc attggtatca aaagcatagg tataaaacac agaataagac
     4981 ttttcagatt tctgttacta ttggtaagaa caagataggc tacaacagga atcatggtca
     5041 ccgcaggaac ttttgtaaaa atagctattc ctaagaggac acctgataga agaattaaaa
     5101 tacttttctt ttcgttattg gagtatttta cattcactgc acaaaatatt gaggccaaaa
     5161 tgaaaggaag ctgaatagat tctaaccata tcgatctgat aagccacgta aatgggaata
     5221 ctgcaaagag aacagaggca attaacgcta cagtcttgtt gtacctccgt tgagagaccg
     5281 cgtaaatcag aaaggtatca actatggcca atattcccat tagaattctt ggagccatgt
     5341 aaagtgattc aatagattga acattcccga taacaggagt caatgagttg ggataaccaa
     5401 tcatacctaa tgtgcctgca agaaataatt gtccaaagta cgggtgatca tataacgcaa
     5461 aagatccaat tacttcttga ggtccttgac ctgataacac atgcattgct ctacgcatgt
     5521 atattccttc atcaaaatct ggatatggaa atcccacagg attccatagg tgagtataag
     5581 ccgataacac cagcggtata gagagcaaga aaaatttatt tgaaataatc ttgcgagaaa
     5641 aactaataat tagatacaaa cctgaacgaa ttctataatt ggtcctcatt taaaattatt
     5701 gtgtatatca ctcgtgcttg gcttccctaa taagaaacgg ttgtcaggtc aataaatttt
     5761 tatattacaa aagtgagttt cacatgtaaa acctatttgc acctatgtac atacatttcg
     5821 ataattggaa ttttattaat tacgctaatc tatctcggat caagcgtaat attctcatat
     5881 tccatcgaac aatatgcttg gactaatgcc tcgtcaatgc gtatgccaag atatgaaatt
     5941 tcggcagaag ctttaaacgg taacatctat gtgaccggag gaggactggc aaatggtact
     6001 ttaatggaca cggtagagat ttacgatcca caacaggata aatggagtct ggcagcgccg
     6061 atgcctgaac cacgcgacca cacaggaatg tcatcatata acggcaagct gtacgtggta
     6121 ggtggattca attggcatac tataccaacg agcacgttat ttatttacga tcttcaaaat
     6181 gatacttgga aagagggtcc tcctatgcct acagcgaggg ccggcttaac tgccgatttt
     6241 attaacggac tactatatgc ggtaggtgga agctctggag acaatgcagg tccgttaaat
     6301 actaacgaag cgtacgatcc tgtaaaaaac gaatggataa aaaaatccga tatgccaacg
     6361 gctagacatc atcatacatc tgcagttgtg gatgacaaat tattcatttt tggcggcaga
     6421 aagacatatg tgccgtctag tttgacgcaa aatgaaatgt acgatccaat ccaagataag
     6481 tggacaacag aaaaagcgat gccgactaaa agaagcggct ttgcggcagc tgaactcaac
     6541 aatagcatat tcgtaatagg aggtgagaaa cgccccggaa gttatgacat taatgaaaga
     6601 tataacgtag aaactgatag ttggacttta gagccaccga tgcctactaa tcgaatgggc
     6661 catgatgccg ttgacctcaa taataaaatc tacgttatgg gcggaaaagc gagtcaaccg
     6721 gtagaaagca cgactggcgc aaatgaaata ttgtactata aaggtaagga tgcaaaataa
     6781 acgcatttat agattgcttt aggaagggat aattctatac aacgacccgt tacccgtaag
     6841 gatatacatg tatccatcta tcccagtctc tatatccgta attcctcccc cgaatccttt
     6901 tgcaaagact acctcttgaa gctcttgaaa atcgccggca atcttgtctt tcagtggtcc
     6961 gggaagatcg agttcagttc tgttctcctt taaatcaaaa tgatatacat tgccccaatt
     7021 aatttctccc acaaatagat catttttgta ttgttttccc aatttatcag aattgaaaaa
     7081 ctctattgat gttacaccaa cagtgagatt ccatgaaaat tcaggattac tatattttcc
     7141 atgcttgtca aaatcaacca gattatccgg ttcttttgag agctcatcct tccctgcata
     7201 tccagacgtc tgattatcgt ctaatagaga tgaattatta attggccaga atccttgcac
     7261 ccttatccag ccactgttga atccaggttc tactagatta atttcatcac caaatgctgg
     7321 tccattctcc gtatcccaga gattaccagt cacgggatca aaatccaatc caaagccgtt
     7381 ccttataccg tacgcataat acatgttcag tggatattta tctccaagta taccatcatc
     7441 tactgcttta ccatcttggg tcactcgaat tataccacct cttcccacgg gtaaatcacc
     7501 gttttggaca ttagcggttt tagcattaac aacacttccg gaaatattat ctctgcaact
     7561 ctgaaactca caactgtccc catcaccggt aattacatac aggttattat caggaccaat
     7621 agtaataact cctccaagat gagcagcacc aggatttgaa gggaggtcta gaacaagttg
     7681 tggattcatc aattcattgt ttaccaactc gtatctgtaa agacgatgtc ctacaggatt
     7741 tcctgatgtg caatgatttc gtactttaca aatttccctg tcatccacgt tatattttga
     7801 ttcggtaaag aacaagaaaa cattagtttt attgacgtca gtattttttg ataatgctat
     7861 gcctaacaag cctctctcac ccttgtttgc aacatttaaa tcaagcaatg gttcgtttaa
     7921 catctcgccg ttgacaattc tccggacagt accgtctttt ttctccaaaa ctaggatatc
     7981 atcatgcccc aaaaacgcca tacccgtaga aaacgggagt cctccaaaca ctaactctac
     8041 cttcaagtca ggatctttga ttacttgtgg taatttatcc atctctggac ttgtcgatgc
     8101 cttgacgaag gtatcatgca tacccaaaaa ttcactatag accagcaatg tgacaaggat
     8161 aaggacaaga acgcatgaaa aaattaattt caaatcgatc tccggaattg cacgataacc
     8221 aatttagatc gggtatccct acttatagat tgtttatgtc tttcaataaa aaatgtggag
     8281 ttttgttcgc agatgtgttt cagtgtgtta tttctggcgt tactattcca gaaaagtgca
     8341 caaggttaaa gtcattttta ttgttgaaca ttactctgag ctaaccgtgt ctctaaggat
     8401 ggataccaaa tatctgaata cgtgaatttc cagtatcagt cacgtaggct gtgcccatct
     8461 ttggattaat ggct
//
LOCUS       DASPFX010000240         2413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1773076, whole genome shotgun sequence.
ACCESSION   DASPFX010000240 DASPFX010000000
VERSION     DASPFX010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1773076"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VD694_05215"
     CDS             complement(<1..282)
                     /locus_tag="VD694_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12141.1"
                     /translation="MKPNNFAMREWHLEHVEKVILRYMKGISPDASSFEKRNFKKYST
                     VSSCAKQIEYDIKHGVTTEEVADLMNKIRNDSSYSEVRQNQDAIQRLDEL"
     gene            complement(394..1752)
                     /locus_tag="VD694_05220"
     CDS             complement(394..1752)
                     /locus_tag="VD694_05220"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HXW12142.1"
                     /translation="MKSRFEFKKISGFSDFLKGLEGVEQLVRIGKSVNPKFELAGIVS
                     KLDKGKAVLFESVDGSNIKVAANVLGTRQRIALSINAKNENMIQERINDALRNKPEIT
                     NIDKGNVWKKNSRSLYDLPIVTHFEKDSGAFITSSLIFARDIETGYQNLSTHRLLRLD
                     KKKMAIRMVEGRHLHKCFTSAKEHGDDLPVSIIVGAHPAVSVAAAYQAPYGENELKMA
                     NSLLNDRLSLIKSPGNGLHIPKYSEILLEGRILADETAEEQMVEMLRTYDIKRKQPVF
                     ELDKIYLTADPIYHDILPGYGEHRLLMGLPIESKLFQSVKDVVSGTRAVHLTDGGSNW
                     LVAVIQINKKLEGEPKNAVVAAFAGHPSLKIAIVVDEDIDPTNPTEVEYAISTRCQAD
                     KDLVIIPNSKGSSLDPSSDQNNLITTKIGIDATASLLKSKERFEIAKIPGQDKIKLSD
                     YF"
     gene            complement(1755..2069)
                     /locus_tag="VD694_05225"
     CDS             complement(1755..2069)
                     /locus_tag="VD694_05225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12143.1"
                     /translation="MKSNRVFLLKFIEFDNGCFVSLSEDLCKIGGVHVSVASNNRTQS
                     ARVIPNIRDPVFTKTLSEKISLMINGIVITNFNNKNPMSLPEMQEIMNEVLKLLEVKA
                     SD"
     gene            complement(2213..>2413)
                     /locus_tag="VD694_05230"
     CDS             complement(2213..>2413)
                     /locus_tag="VD694_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12144.1"
                     /translation="IRNLNRSVRIEIVNEFGTSRNILPNRRGNRDVGSAKSIAMRTGR
                     IFLERLPCNGTKSMLTNHKDCQ"
BASE COUNT          682 a          489 c          374 g          868 t
ORIGIN      
        1 taattcatcc aatctttgta tggcatcctg attttgtcta acttcagaat acgatgaatc
       61 atttcttatt ttgttcatca aatctgctac ctcttcagta gttactccat gctttatgtc
      121 atactctatc tgttttgcac aacttgagac agtactatat tttttaaaat ttcgtttttc
      181 aaatgatgac gcatcaggag aaattccctt catataacgc agaataacct tctcaacatg
      241 ttcaagatgc cactctctca tcgcgaaatt gttaggtttc atggcacgta ctcagtgata
      301 tgcaaataat aagtatttaa tctattatac aaatttaaaa tctaatgaac aaaatattaa
      361 ctttcaattg aacgaagaca aaaacaacgt tctctagaaa taatctgaaa gtttaatttt
      421 atcctgaccc ggtatctttg caatttcaaa tctttctttt gatttcaaga gacttgcagt
      481 tgcatctatt ccaatttttg tggtaatgag attattctga tcgctggagg gatccaaact
      541 agagcccttt gaatttggga taatcaccaa gtccttatca gcctggcatc ttgttgaaat
      601 cgcgtattcg acctcggttg gatttgtagg atctatgtct tcgtcaacta ctattgcaat
      661 ttttagcgag ggatgtcctg caaaggcagc gactacagca tttttcggtt ccccttccaa
      721 ttttttattt atttgaataa ccgcaaccag ccagttactt cctccatctg ttaggtgaac
      781 tgctctagta ccagatacca catctttcac gctctggaat agtttagatt ctatcggaag
      841 gcccatcaac aatctgtgct ctccatatcc tggtaaaatg tcatgataaa tgggatctgc
      901 agttaagtaa attttgtcca attcaaaaac aggctgcttt cgtttgatat cataagttct
      961 taacatttca accatttgtt cctctgctgt ttcatctgca agtatccttc cttccaagag
     1021 aatctcagag tattttggaa tgtggagacc attaccaggt gatttgatca aggataatct
     1081 atcattcaaa agtgaatttg ccatctttag ttcattttct ccatagggtg cttgataagc
     1141 tgccgcaact gatacagcag gatgagctcc tacaataatt gaaacaggta aatcatcccc
     1201 atgttccttt gcactagtaa aacacttgtg aagatgtctt ccctccacca ttcttatcgc
     1261 catctttttt ttgtccaatc gcaataggcg gtgagttgac aaattctgat atccagtttc
     1321 gatatccctg gcaaaaatca aagaggatgt tataaacgct cctgaatctt tttcaaaatg
     1381 tgtaactatt ggcaagtcat acaaactcct tgaattcttt ttccaaacat tgcccttgtc
     1441 aatattagtt atttcaggtt tgttccttaa ggcgtcatta atcctctctt gtatcatatt
     1501 ttcattcttt gcgtttattg aaagtgcgat tctctgtctt gtgcccaaaa cattggcggc
     1561 cacttttatg ttgcttccat caacagattc aaaaagtacg gctttaccct tatccagttt
     1621 gcttactatt cctgcgagtt caaatttggg attgacagat tttcctattc ttactaactg
     1681 ttccactcct tctaatccct ttaaaaaatc agaaaaaccg ctaatctttt tgaattcaaa
     1741 cctagacttc atttctaatc actagctttt acttccaata attttaatac ttcattcatt
     1801 atctcttgca tttcaggtaa tgacattgga ttcttattat tgaagttagt tattactatt
     1861 ccatttatca ttagggatat tttttctgac agagtcttag tgaatactgg atctcttata
     1921 tttggtatta ctctggcgct ttgagttcta ttgttggatg cgacagaaac atgcactcct
     1981 cctatcttac acaaatcttc agaaagagaa acaaagcaac cgttatcaaa ttcgataaat
     2041 ttaagtaaaa aaactctatt tgatttcaag gtaatcctct tttcaatgta gttcccttga
     2101 tgggattcgc tcaaattaac tatgaatatc ttggtacatt atggtatcta aatcatttga
     2161 ttagactatt caagtctaag tttcagctgt cctgaaattg gaattatgca ctttattggc
     2221 agtccttatg atttgtcagc atacttttag ttccgttaca gggcagtcgc tctagaaaaa
     2281 tacggccagt tcgcatagcg attgattttg cagatccaac gtctctgtta ccacgacgat
     2341 tggggagaat atttcttgaa gtaccgaatt cattaacaat ttctattctt acagatctat
     2401 ttagattcct tat
//
LOCUS       DASPFX010000241         2870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2067053, whole genome shotgun sequence.
ACCESSION   DASPFX010000241 DASPFX010000000
VERSION     DASPFX010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2067053"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1421
                     /locus_tag="VD694_05235"
     CDS             <1..1421
                     /locus_tag="VD694_05235"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HXW12145.1"
                     /translation="GKFQKDSYSFQANLSTAIHKFSEMQKILGACRNEKGTIKTIISQ
                     NRKVNPPTPFNLSDLQKEAFRIFKLSPAVTLSIAESLYLAALISYPRTSSKKLPASIG
                     YEKILSLLGKNNATVDKNMIQELLLKKNLVPNQGVEEDPAHPAIYPTGVKHKKLSIMQ
                     NKILDLVIKRFLATFGDSAVTNFNKVTINVSGHDFIAKGNTILNYGWIPLYKPYFSIK
                     EMSLPHLVKGDSVQVNEVTALEDFTKPPASYNQASLLEKMESEGIGTKSTRAETINLL
                     IKRKYITQDKIGLEPTELGFIILDTMKKFIPDIVSTKLTAFLESSIKRVEEGELDMIN
                     LRKNLEKSLVNPLNKIKINELAIGNEIRNGLATSEVKRSFGKCPKCHTGEMVLIKSNK
                     TKKRFLACSRFRVTGCKTITIVPQFGLIKKGNSICSCGWPILSLIFKRNSALKICVNR
                     SCRENKSNRTDNHHNLDPNTFI"
     gene            complement(1391..2236)
                     /locus_tag="VD694_05240"
     CDS             complement(1391..2236)
                     /locus_tag="VD694_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HXW12146.1"
                     /translation="MKKKFRAAIVQMKSSQDKEHNLAYSLKLINEAAKKKARLICFPE
                     FQMAYSPAEQKSESLHKIAEKITGNFVSALSNSARKNKINVIATMYEVINTNEKNKKV
                     FDTGIIINELGKVQSIYRKIHLYDALGFKESKKLLAGSIIEKPSKTSVGNLGLLICYD
                     MRFPEISRILTVNGANILVSPSGWVAGFMKKVHWEIIARARAIENGVYVLAPNQVGNI
                     YCGHSLAIDPFGATLLDMKNRQGIEFVDIDIAKIDTTRRTLPLLMNRRTDVYRNHMNV
                     FGSKL"
     gene            complement(2295..2504)
                     /locus_tag="VD694_05245"
     CDS             complement(2295..2504)
                     /locus_tag="VD694_05245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12147.1"
                     /translation="MTENSVRHVDTLREMDSMKKEYQIRCSHYELELFKNENRITCVI
                     CGKNWDFLEERGYSHKKQAYSAEKD"
BASE COUNT          950 a          495 c          485 g          940 t
ORIGIN      
        1 ctggaaaatt tcagaaagat agctattctt tccaggcaaa tctgagtact gcgatacata
       61 aattttcaga aatgcaaaaa atattaggtg cgtgtagaaa tgaaaaaggt actatcaaga
      121 caataatttc ccagaataga aaggtcaacc cccctacacc attcaattta agtgatctgc
      181 aaaaagaggc ctttcgaata ttcaaactgt ctccggcagt aaccctttcc atcgccgaat
      241 ctctctactt ggcagcacta atctcgtatc cacgcacatc gagtaagaaa cttcctgctt
      301 ccatcggata cgaaaaaatt ctaagtctat tgggcaaaaa taatgccaca gtagataaaa
      361 acatgataca agaattatta ttgaaaaaaa atttagttcc caatcaaggt gttgaagaag
      421 atccagctca tccagccatt tatcctacag gtgtgaaaca caaaaaacta agcatcatgc
      481 aaaacaaaat tctagactta gttattaaga gatttttagc tacatttgga gacagtgctg
      541 taaccaattt caacaaagtt actatcaatg tgagtggcca tgactttatt gcgaaaggaa
      601 acacaatctt aaactatgga tggattcccc tttacaaacc atattttagt atcaaagaaa
      661 tgagtttgcc tcatcttgta aagggggatt ctgtacaagt aaatgaagtt actgcgttgg
      721 aggattttac caaaccgcct gcaagttata atcaggcaag tctattagaa aaaatggaat
      781 cagaagggat tggaacaaaa tctactaggg ctgagacaat caacttattg ataaaacgta
      841 agtatattac gcaagacaag ataggattag agcctactga gttaggattt atcattcttg
      901 atactatgaa aaaatttatt ccagatattg tctcaacaaa attaactgcc ttcctggaat
      961 caagcatcaa aagagtagaa gaaggagaac ttgatatgat taaccttcgg aaaaatttgg
     1021 aaaaatcttt ggtgaatcct ctaaacaaga tcaagataaa tgaacttgcg attggcaatg
     1081 aaataagaaa tggacttgct acttcagagg ttaaaaggtc atttggtaaa tgtccaaaat
     1141 gtcacacagg tgaaatggtc ttgatcaaga gtaataagac taaaaaaaga tttctagcct
     1201 gttctagatt tagagttact ggatgtaaga caattaccat agttccccaa tttggattga
     1261 ttaagaaagg taatagtatt tgttcttgtg gatggccaat tttgagttta atattcaaaa
     1321 gaaatagcgc actgaaaata tgtgtgaata gaagttgccg agaaaataaa tcaaatagaa
     1381 cagataatca tcacaatttg gatccaaata cattcatatg atttcgatat acatcagttc
     1441 ttctattcat caatagtgga agtgttcttc tagtggtatc tatttttgcg atatcaatat
     1501 ctacaaattc aattccttgc cgatttttca tatctaacaa ggtggcgcca aatggatcga
     1561 tcgccaaact atgaccacaa taaatattgc caacttgatt tggtgcaagc acgtatacgc
     1621 cgttttctat tgctcttgct ctagctataa tttcccaatg tactttcttc atgaatccag
     1681 ctacccaacc tgatggggat actagtatat tggccccatt gacggttaga attctggaaa
     1741 tttctggaaa tcgcatgtca taacatatga gcaatcccag atttccaacg gatgtcttgc
     1801 ttggtttttc tataatactt cctgctagta actttttaga ttctttgaat cctaacgcat
     1861 cataaagatg gatttttcta taaattgatt ggacttttcc gagttcatta attattatac
     1921 ctgtatcaaa aactttctta ttcttttcgt tggtattgat aacttcgtac atcgttgcga
     1981 ttacgtttat tttgtttttc ctggccgaat ttgataatgc tgatacaaaa ttacccgtta
     2041 ttttctcagc aatcttatgc aacgattctg atttttgctc tgctggagaa tatgccatct
     2101 gaaattctgg aaaacaaatc aatcgcgcct ttttcttggc tgcttcattt atcagtttca
     2161 gcgagtaagc taaattatgt tccttgtctt gtgaagattt catttgaacg atagcagctc
     2221 tgaatttttt tttcatagag ttcaccaaaa ttcaaagtta aaatttttaa ttgaaaagtt
     2281 gatgaacaag atgatcaatc cttttctgca gaatatgctt gtttcttgtg tgaatatcct
     2341 ctttcttcca agaaatccca atttttacca catatcacac aggtaatccg gttttcattt
     2401 ttgaataatt ccaactcata atggctgcat cgaatttggt attccttctt catggaatcc
     2461 atctctctta aagtgtctac gtgtctaaca gaattttctg tcatgcaatg aaatacttga
     2521 tttgattgct tttatctttc ttttgattct catgtctaaa ctaatctaat ctagtttaag
     2581 ataataacaa gtcgatagcc aagattgtgc ataaaatttg ataagtatga acaggaaaaa
     2641 tatcttatga agaaatgtcc aatctgcgga tgtacagagc ataggttatt tggttgtgga
     2701 aatcattggt taagacacaa gaaatcaagc agtgggtctt gtgaagtaaa gtaattttaa
     2761 tcattttatt tcatacaatg ctattgataa ttttaatgca atagtatcat ctgttttttc
     2821 cgctaatggc aaaatgtatt tttgagtctc ttccttgtat cgaagagcct
//
LOCUS       DASPFX010000242         2176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_217363, whole genome shotgun sequence.
ACCESSION   DASPFX010000242 DASPFX010000000
VERSION     DASPFX010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217363"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            211..513
                     /locus_tag="VD694_05250"
     CDS             211..513
                     /locus_tag="VD694_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12148.1"
                     /translation="MLSVCDWRNIITSSVLLEHGPLMESKDQYCLPISGFQIFTVSAP
                     GITEEVPVILKQNEVCIVEASDDVPRQIDNCPYEQGEQITITYKREQPSIESHRPT"
     gene            700..1389
                     /locus_tag="VD694_05255"
     CDS             700..1389
                     /locus_tag="VD694_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HXW12149.1"
                     /translation="MKLSIKEFVYGATDGAVTTFAVVAGVVGAALSPSIILILGFANL
                     LADGFSMAIGNYLGSKSQKEYMEKERRREEWEIDNLVEQEKQEIRDIYTKKGFKAELL
                     DEIVNVITSRRKVWVDTMMREELGLVEDKKQPLDAAITTFAAFNLVGLVPLIPFVFLH
                     VSGFVISTEHAFLYSVLFTGISFFIIGIVRGKIVIKSLFRTGLSTLAVGGIAATVAYI
                     VGYLLGMMVIK"
     gene            1889..>2176
                     /locus_tag="VD694_05260"
     CDS             1889..>2176
                     /locus_tag="VD694_05260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12150.1"
                     /translation="MSLFTLLITSIFMTQIQLAYAQVNINTNYNKTNSIIMQNNILLI
                     TNILAKNLENHVQKAGAILEITSKLPQVRDVPFAHLLNQTLATLHGIPQDSD"
BASE COUNT          746 a          356 c          418 g          656 t
ORIGIN      
        1 aatatcgtaa cggagcaagg ttttgaagag ttccgtcaga atctaaaaca attcgcagag
       61 gcccataagg cagttaacgt atcgatagca gttattgcca gactggccgc agggggagca
      121 gaaggcgtta ttgctacaat tctatatgaa taacgaggtg gaataaactg ggttatcctt
      181 atcggattct cagaggacga aaaatacctg ttgcttagcg tttgcgattg gagaaatatt
      241 attacttctt cagttttatt agaacatggc ccccttatgg aaagcaagga tcaatattgt
      301 cttcccatat caggtttcca gatatttacc gtgtcagcac ctggaattac cgaagaagtg
      361 cctgtgatcc taaagcaaaa cgaagtatgc atagtagaag catctgatga cgttccaaga
      421 caaattgata actgtccgta tgagcaaggt gagcaaataa caataacgta caagcgagag
      481 cagccttcga tagaaagtca cagacctact tagcagctta aacaataacc tacgatccta
      541 acaagatctg agtatagtga ctctgtggta tacttagcaa acaatctgaa acatattatt
      601 tgtatttagt atagataagc agataattag ggttgaaaca gatgaacaag ataacaatta
      661 atatgtctgc tataaaagta ggttttttgt gataatatca tgaaattgtc aatcaaggaa
      721 tttgtatatg gtgctacaga cggtgctgta actacatttg cagttgtagc cggagtagta
      781 ggagcggctt tatctccatc gattattctg atattgggat ttgcaaattt gttagcagat
      841 ggcttttcaa tggcaatagg aaactatcta ggcagcaaat cccaaaagga gtatatggag
      901 aaggaaagaa gaagagaaga gtgggaaatc gataatctag ttgaacagga aaagcaagag
      961 ataagagata tttatacaaa gaaagggttt aaggctgaac ttttagatga aatagtaaat
     1021 gtgattactt cccgtagaaa agtatgggta gatacaatga tgagagaaga attgggacta
     1081 gttgaagata aaaaacagcc attagatgct gcaataacta cgttcgctgc attcaattta
     1141 gttggtttag ttccgttaat tccatttgta tttctccacg tttcgggttt tgtcatttca
     1201 acagaacatg catttcttta ttctgtatta tttaccggaa tatctttctt cataattgga
     1261 attgtcagag gaaaaattgt aattaaatct ctttttagga caggcctaag tactttggca
     1321 gttggtggaa ttgccgctac agttgcatat atagttggat atttgttagg tatgatggta
     1381 ataaaatgac gatagctaga attcgcactt atgatgctta ggtgttatca tcttagatga
     1441 ttcaggaatc aagtatcttt agctaactat tttagtcaac tatgctaaat gtattagaac
     1501 actctgcatt ataaccaagc ttaagccgtt tcataaatgt gcaaggttat tttcttataa
     1561 atgacaattt ctgagctgaa atatacttga actactgtta atcgatgagg cacaaacact
     1621 tggcaatacg attaaaaaag aaacagaagc tctccttagc attccgatcg atgttgttgc
     1681 ttggacttgt agctaataga atccaaatct tacgaagaac agcagacata attcccaaaa
     1741 aacgaaatac ctatagctca taattttaat acgttagaat caaccgacaa ttggagtttt
     1801 cttctaaaac tattaaataa cttttttctg taatgtcaaa aagtgacatt atgatagaaa
     1861 ttcctagact tagcggtata gtctctctgt gtcgcttttc actttgctta ttacatcaat
     1921 atttatgaca cagatacaac tagcatatgc tcaggttaat atcaacacaa attataacaa
     1981 aaccaattca atcattatgc aaaataacat tttactaatt acaaatatct tggcaaagaa
     2041 ccttgaaaat cacgttcaga aagcaggtgc cattctcgaa ataacaagta aattaccaca
     2101 agtaagagat gttccctttg ctcatttgct taatcaaaca ttagctacat tacacggtat
     2161 acctcaggac tcggat
//
LOCUS       DASPFX010000243         2577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1164745, whole genome shotgun sequence.
ACCESSION   DASPFX010000243 DASPFX010000000
VERSION     DASPFX010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1164745"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VD694_05265"
     CDS             <1..210
                     /locus_tag="VD694_05265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12151.1"
                     /translation="KKFLPNAITAIVNQAALSGLDKYPYFKNKSINNNINNNNREFAY
                     VCKDFTCSLPISTVEELEKNIHNRD"
     gene            289..924
                     /locus_tag="VD694_05270"
     CDS             289..924
                     /locus_tag="VD694_05270"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0070007 - glutamic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family glutamic-type intramembrane
                     protease"
                     /protein_id="HXW12152.1"
                     /translation="MSNHNIHGTLYSDLKKDFNPLSWISKYRRNSVYYLTIMVLFYHL
                     IGFVIMIIGSIIVNIVVNDYSEPTIPLTVVSVIFAGPFEETLFFGIPFYLTGNNLVTL
                     AGGLVWASLHILNTPTVQVNTLAYLTWLFVTPSIFASVRTWNSGKGWFAIVSHSVWNV
                     IFFTAGCTNGEFPCRIINESDYLIDIAYVSTSAVFILLTYLLYLRHRNKIV"
     gene            1065..1244
                     /locus_tag="VD694_05275"
     CDS             1065..1244
                     /locus_tag="VD694_05275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12153.1"
                     /translation="MGKIFLQLICDECKQIILEKEGEENLSYEKFPITEQEALELDKN
                     HRGHECHIEAVEKIQ"
     gene            1463..1996
                     /locus_tag="VD694_05280"
     CDS             1463..1996
                     /locus_tag="VD694_05280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12154.1"
                     /translation="MENMEKKWISDFVGVGYRYTDIIMNILILYGDRKRAIKIWNENI
                     HWWPDDRITLRFIEDGDYYWFILYQNGKNLLSKENIGFFKKNELTQNYLRFKQNFDQK
                     TLLRFALYKSVENKINENDDKTKNKNVYKKNSPPFEINIFKRMKTVYDVKFQNIRDLE
                     SDSVENSLIMNLGSNYA"
     gene            1989..>2577
                     /locus_tag="VD694_05285"
     CDS             1989..>2577
                     /locus_tag="VD694_05285"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HXW12155.1"
                     /translation="MLREFHCVQDCSDCCIYRQYFPSVHFGKIGVLLLPEEKKEIENL
                     AESSKLKITILPRLGIGFNEKFDGPSQIIAYQLMGKINGDYCPFLDTDSKDRSPHGGF
                     ICQIYETRPLSCHAYPVIKEKTKNVELDNKCKFSCQNSIWTSKNFLENELKALKRISN
                     DFDRFSNQRIWRYATHVGDEPFVKLLLPRGWYLQGE"
BASE COUNT          896 a          414 c          475 g          792 t
ORIGIN      
        1 aagaaattcc ttccaaatgc cattacagca attgttaatc aagctgcgtt atcggggctt
       61 gataagtatc cttattttaa gaataaatcg attaacaata acatcaacaa taacaataga
      121 gaatttgcct acgtgtgtaa ggattttacg tgttctctgc ctataagtac tgttgaagag
      181 cttgaaaaaa atattcataa cagagattaa aatatctttg atttcaagca ataataaaag
      241 gcacaagatg taaatatcgt catctttctc acatctttaa catcctaatt gtctaatcac
      301 aatattcacg gtacgttata ctctgacttg aagaaggatt tcaatcctct ttcatggatc
      361 tcaaagtata gacgaaattc tgtatactac ctaacaatta tggtgctgtt ctatcacctg
      421 attggatttg tcatcatgat aataggatcg ataattgtta atattgtagt aaatgactac
      481 agtgaaccta caattccact gacagtggtt tcagtaattt ttgcgggtcc ctttgaagag
      541 acattgtttt ttgggatacc attttaccta acaggaaata acctggttac actagcagga
      601 ggtcttgttt gggcttcgtt acacatttta aacactccga cagtccaggt caatactctt
      661 gcatatctga catggttgtt tgtaacccca tctatttttg caagcgtcag aacgtggaat
      721 tctggaaaag ggtggtttgc gatagtttca cattcagttt ggaatgtgat tttttttacg
      781 gcaggctgca caaatggaga attcccttgc agaattatta atgagagcga ctatcttatt
      841 gacattgctt acgtttcgac ctctgcagtt tttattttgc tcacatattt actctatcta
      901 agacatcgaa acaagatagt ctagaagtca atgcaataag agacacaaga tgacaattta
      961 caactgacta accattcgtg aaagcatttg gtttttagca attgtaaggc tgtccttgtc
     1021 atgactggga atggtctaaa tatccttatt attttaatct agatgtgggt aaaatattcc
     1081 ttcaactcat atgcgatgag tgcaaacaga ttattctaga aaaggaagga gaggaaaatt
     1141 tgagttatga aaaattccca ataacagagc aggaagcatt agaactagat aagaatcaca
     1201 gaggccatga atgtcatata gaggccgtag aaaaaattca gtaatacgcg agtttcgcag
     1261 catcaactaa actttgaaat ttaaaacttt aaatcaaaag gaagacgatc aattattgcc
     1321 aatgatgagt gttctagtta tccctctgag gctaagtcat caacccagag cacatatttc
     1381 acaagttgta tgtattccaa aaataaagca aaatttcgat acaatacatc tttagataag
     1441 tttactttat cgtgatacca taatggaaaa tatggagaaa aaatggattt cggattttgt
     1501 tggtgtgggt tacaggtata ccgatattat tatgaatatt ttgatactct acggcgatag
     1561 gaaacgggct ataaaaatat ggaatgaaaa catacactgg tggccagatg accgaataac
     1621 cctgcgattt attgaagatg gagattatta ctggtttatt ctctatcaaa atggaaaaaa
     1681 cctgctttca aaagaaaaca ttggtttctt taagaagaat gagttgacac aaaactatct
     1741 gcgatttaaa caaaattttg atcaaaaaac attattgcga tttgcacttt acaaatctgt
     1801 ggagaataaa atcaatgaaa atgatgataa gacgaagaat aagaatgtct acaagaaaaa
     1861 tagtccacct tttgaaataa acatctttaa aagaatgaag acagtttatg atgtaaaatt
     1921 tcaaaatatc cgagatcttg aaagtgacag tgttgaaaat tcgttgataa tgaatttagg
     1981 ctcgaactat gcttagagaa tttcattgtg tgcaagattg ttctgattgt tgtatctatc
     2041 gccagtattt tccctcagtt cattttggaa aaataggcgt tctgctattg cctgaagaaa
     2101 aaaaagaaat tgagaatctg gctgaatcct ccaaactcaa aattacgata ttgccaagat
     2161 taggaattgg gttcaatgag aaatttgatg gtcccagtca gataattgcc tatcagctca
     2221 tgggtaagat caatggagat tattgcccat ttcttgatac cgacagcaag gatcgctcgc
     2281 ctcatggagg ttttatctgt caaatatacg agacaagacc attgtcttgt cacgcatatc
     2341 cggttataaa agaaaaaaca aaaaacgtcg agcttgataa taaatgcaaa ttctcatgtc
     2401 aaaattcaat ttggacaagt aaaaatttcc tggaaaatga attaaaggct ttaaaaagaa
     2461 tcagcaatga ttttgacagg ttttccaacc aaagaatttg gagatatgcg acacatgttg
     2521 gagatgaacc attcgtgaaa ctattactcc caagaggatg gtatttgcaa ggcgaat
//
LOCUS       DASPFX010000244         2574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1990611, whole genome shotgun sequence.
ACCESSION   DASPFX010000244 DASPFX010000000
VERSION     DASPFX010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1990611"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1117
                     /locus_tag="VD694_05290"
     CDS             <1..1117
                     /locus_tag="VD694_05290"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HXW12156.1"
                     /translation="LVLSNSSDVKIGEHVIAIGNPFGLSGSMTEGIVSGLGRVIPSQN
                     PEGPQGPDIVPDEGVPLVPPTSFSIPEIIQTDAAINPGNSGGPLLNLRGQVIGINSAI
                     FSLTGEYSGVGFAIPASTLQRVVPILISEHTYKHPWIGISGVDVNEQIASVMKLNSSK
                     GFLVIDTSPGGPAAKAGIQGGNKMVDINGRKTNLFGDVIVKIDNQNVSKIDDILVYLE
                     QQKKVGQGVNLTVVRDGKLQTINVVLAERPLRLNGEPLWLGIDGIDMDQDIASQLNVN
                     QSTGILVVGIISDGPADKAGMEGGFRITDINGTSVELGGDIIISADKQPIDNLRDMST
                     YIANNKIDGDTMSLGVIRDGKPLEVQVTLEKRPADAK"
     gene            complement(1172..1915)
                     /locus_tag="VD694_05295"
     CDS             complement(1172..1915)
                     /locus_tag="VD694_05295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12157.1"
                     /translation="MDYTNYLSILYDYERKDVGSEEKSILFKVINSVDLSAQIGSYLK
                     LRDKNQFGDSSAMSKLLSLKLLSEKKGLILRGTRKYQLTSIGLFYVLNETRTYPPSLL
                     KKYSDDPILKSLLYQYFEVDTISTSSGRFFSLITHYLRQCCRITLNWLEDTQNSNEEH
                     KNKVMNHLLFELELNAKLLALRILITYSDSNILTHTPKSESGDSDVAYYEIESSMKET
                     LGRDKKFIELLHNTNADFKSGFKEFTNSK"
     gene            2075..2186
                     /locus_tag="VD694_05300"
     tRNA            join(2075..2106,2143..2186)
                     /locus_tag="VD694_05300"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2147..2149,aa:Pro,seq:ggg)
BASE COUNT          792 a          432 c          537 g          813 t
ORIGIN      
        1 gctggtcctc agtaattctt ctgacgttaa aataggcgaa catgtaattg ccataggaaa
       61 cccgttcgga ctttctggtt caatgacaga aggaatagtt agcggattag gaagggttat
      121 cccatcacag aatccagaag gtccgcaagg tcctgatata gtgcctgatg aaggggtacc
      181 acttgttcct ccaacctcat tttccatacc cgaaataatt cagacagatg cggcaataaa
      241 tcctggaaat tccggaggac cactactcaa tttgaggggt caagtaattg gaattaatag
      301 cgccattttt tcattgactg gtgaatattc cggtgttgga tttgccatac ctgcaagtac
      361 tctacaaaga gtagttccga ttttgatatc agagcacacg tacaaacatc cctggattgg
      421 aatctcaggt gtggatgtta atgaacagat cgcctcggtc atgaagctta attcgagtaa
      481 gggatttctt gtgattgata ccagtccggg aggaccagca gctaaagctg gaatccaagg
      541 cggaaacaaa atggtggata ttaatggaag aaagaccaat ttgtttggag atgtcattgt
      601 caagatagat aatcaaaacg tttccaaaat agatgatata ttagtatatt tggagcaaca
      661 aaagaaagta ggacagggcg ttaatttgac tgttgtcaga gatggtaaac tccaaacaat
      721 aaatgtggta ctggctgaaa gaccattaag actcaatgga gaaccattgt ggttgggtat
      781 tgacggtatt gatatggatc aggatattgc ttctcaacta aacgttaatc agagtacagg
      841 aatattggta gtaggaatta tttcggatgg acctgcagac aaagcaggaa tggaaggtgg
      901 cttcaggatt accgatatca atggaacatc ggtggagctg ggtggagata taattatttc
      961 tgcagacaag caaccaattg ataatttgag agacatgtca acgtacatag caaataacaa
     1021 gattgatgga gatacaatga gtcttggtgt tatcagagat ggaaagccgt tggaagttca
     1081 agttacatta gaaaaaagac ctgcggatgc aaagtaggaa ttgtcaccag atagaatatc
     1141 gtagttagtt ggtctttcag gctacggata actatttaga attagtgaat tccttaaagc
     1201 cactcttaaa atctgcattt gtattatgca agagttcgat gaatttttta tctcttccaa
     1261 gagtttcctt catactgctt tcaatctcat aatatgcaac atctgaatca ccagattcgg
     1321 attttggagt atgagtgaga atattcgaat cagagtatgt tatcagaatc cttaaggcta
     1381 gtaattttgc gttcaattct aattcaaaga gtaaatgatt catcactttg tttttatgtt
     1441 cctcattaga gttctgtgta tcttccaacc agttcaatgt tatcctacaa cattgtctaa
     1501 gataatgagt gatgagtgaa aaaaatctgc ctgagctggt ggatattgtg tctacctcaa
     1561 aatattggta caatagagat ttcagaatag gatcgtcact atactttttc aaaagacttg
     1621 gaggatatgt cctggtttcg ttaaggacat agaataaccc aatacttgtt aactgatatt
     1681 ttctcgttcc tcttaatatc agtccctttt tttcggaaag aagtttgaga ctcagtaatt
     1741 ttgacatagc tgaactgtca ccgaactgat tcttgtctct taacttcaga taagagccta
     1801 tttgtgcaga aaggtcgaca ctgtttatca ctttaaataa aattgacttt tcctcacttc
     1861 ctacatcttt tctttcataa tcgtataata tggaaaggta gttggtgtaa tccatgttgt
     1921 atgtgcagta ttatgataac caaattaatt ggatttaaat tcttcatttt acaaaccatg
     1981 atcaggaatt cacatccttg ctaggtcact ttgatttcat gttaaaagca ggataatact
     2041 acatttaaaa agctctccat ttgtctatgt cgtaggggcc atcgtctagc ttggtcaagg
     2101 ataccaactc gactgatttg attaaatttt gtcgaggtat tggcctgggg cgctggcggt
     2161 cgtgggttca aatcccactg gccccataaa ttaagtttgt taaaggaggg atcattttat
     2221 gatgttgcaa aaaacacagg aaattatgct tgttactacc ccagaagaag tttgagtaga
     2281 aaatctaggg cctttcttga actaaatgat tattgattca ttttaagtta atacttctgg
     2341 tttataattt gtcttctgta ttttactcat cacgagttct gttacttgtt ctgttatttc
     2401 attctgtaca ttttggataa gacacaacaa gtcaggtgca tgtgactcca tccaaaattg
     2461 ctgatttgat attgaatggc cctgatataa catcaaagat tagcgcgcga ttttcagggt
     2521 atcttctaat tgcttcgaat gttgcagaaa gagtaatagc aagatacata gttg
//
LOCUS       DASPFX010000245         2459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1878071, whole genome shotgun sequence.
ACCESSION   DASPFX010000245 DASPFX010000000
VERSION     DASPFX010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1878071"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..993
                     /locus_tag="VD694_05305"
     CDS             <1..993
                     /locus_tag="VD694_05305"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HXW12158.1"
                     /translation="LDEIDKMMLSYLGKNARISSREIERNLQDIGYKITERAVRYRIR
                     KLETSNTVLGYSTILNPSFVSQRVNRTVILKFKYSYNASTLIDRLENYVQEASFCVYS
                     ARLSGDFDWICHFVFDSIEQYELESNNFLHRFADLIADFRSYESKPAKVSTYSVSDEH
                     DMVERKSRVFKILNSLQKYNNLNDKLRFIVESVVKYFDAKFARIWLVDKERKYLILKF
                     SAGKYKNIQGEFSKVPLDSNKIGPIVKTKKPTISNDVVNDPRIRYPEWAKKERLKSFA
                     GYPLMSKGQPIGVLGMFSEKKLSPADFEILRVFCDQISNELASFLSAAEFLSIK"
     gene            1240..1545
                     /locus_tag="VD694_05310"
     CDS             1240..1545
                     /locus_tag="VD694_05310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12159.1"
                     /translation="MEYFEIDRVIEELSRSYAAPCTTTWFKIAENRRPSIDEYRKKVV
                     EFMKHFENTLSDYYPNNAQKEHLIEYVKKGLQKAIYSINVGNDKEVERRYKYYVDYE"
     gene            1562..2185
                     /locus_tag="VD694_05315"
     CDS             1562..2185
                     /locus_tag="VD694_05315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12160.1"
                     /translation="MVNLRGLAIPAIIVLLVGGTISFFMAFSFYPEKHVNVKINGECY
                     EFLDEAYAKYKKLQAEKELLIFRLQANAIELPNTVIPVIFSGAGEEVDDFANRYDIKK
                     ISSQRIGANNNYIDKYIIKATMTKQDFENIINDLTIKDLDPLTKSIAGTIGLQPNPHI
                     TEKEGKRISLYAKDFMRNGIQQIIDASNVDSDYDGVRQAECRTKIQY"
BASE COUNT          878 a          387 c          489 g          705 t
ORIGIN      
        1 ctcgatgaaa tagacaaaat gatgctctca tatctcggca agaatgctcg tatatcatct
       61 cgtgaaattg aaagaaattt gcaggatata ggctacaaga ttacagaaag agcggtaaga
      121 tacagaatac ggaagctaga gactagcaac acagttcttg gttattccac aattctgaac
      181 cctagttttg tttcacaaag agttaaccga acagttattc tcaaattcaa gtattcctat
      241 aatgcatcaa ctttaatcga tcggctggaa aattatgtac aagaagcatc cttttgtgtc
      301 tattctgctc gcttgagcgg agattttgat tggatatgtc attttgtatt cgattcaatc
      361 gagcaatatg aattagagag caataatttc ctgcatcgtt ttgcagatct catagctgat
      421 ttccgttcgt acgaatcaaa gccagcaaaa gtatctactt actctgtttc cgatgaacat
      481 gacatggttg aaaggaagtc acgtgtgttc aaaatcctca attctttaca aaagtataac
      541 aatttgaatg ataagcttcg ttttattgtt gaaagcgtag taaaatattt tgacgcgaaa
      601 tttgcaagga tatggctagt tgataaggaa aggaagtatt taatactaaa gttcagtgca
      661 gggaagtaca aaaatattca aggagaattt tctaaagtgc ccctagattc taacaagata
      721 gggccaatag taaaaacaaa gaagccaaca atttcaaacg atgttgtaaa cgatcctaga
      781 ataagatatc ctgaatgggc aaaaaaggaa agactgaaat cttttgcggg atatcctctt
      841 atgtccaaag gtcaacccat aggtgttctt ggaatgttta gtgagaagaa actcagtcca
      901 gcagattttg agattcttcg agttttttgt gatcaaatct ccaatgaact tgcctctttc
      961 cttagtgcag cagaattctt gtccatcaaa tgatgttcct ctaaagctat atgctagaga
     1021 ctttgattca ataggaatat tgatttaaaa atataagagc atgcttcata ctggaagagc
     1081 aatatagact tcggctttgg attctgattc cgaagcggaa atattcgacc cgaatacggc
     1141 taaatgaata ggatatatct tccaattagg aaatttcgga gtatatcgta cttccggatt
     1201 gaatattagc attaatgacg aagtaataat tatatgaaat tggaatattt tgaaatcgac
     1261 cgggttattg aagagctttc caggagctat gccgctcctt gtacaactac atggtttaaa
     1321 atagcagaaa atagacgccc ttcaatagat gagtatagaa aaaaggtagt agagttcatg
     1381 aagcattttg agaataccct ttcagactat tatcctaata atgcccaaaa ggaacacctc
     1441 atagaatatg ttaaaaaagg gttacaaaag gcaatctata gcataaatgt tggaaatgat
     1501 aaggaagtcg aaagacgcta caaatactat gtcgattatg aataagaaga tgagataaaa
     1561 tatggtaaat cttcgtggcc tggcaatacc tgcaattatt gttttgttgg taggtggcac
     1621 gatcagcttt tttatggctt ttagttttta tcctgaaaaa cacgtcaacg taaaaataaa
     1681 tggagaatgt tatgagtttt tagatgaggc ttatgcaaag tataaaaaat tgcaggccga
     1741 aaaagaattg ctgattttta gactccaggc caatgcaatt gaattaccta atactgttat
     1801 accagtgatt ttcagtggag ctggagaaga agtagatgac tttgcgaata gatacgacat
     1861 aaagaaaatt tcgtctcaga ggataggtgc caacaataat tacatagaca aatatataat
     1921 caaagcaact atgacaaagc aagattttga gaatataatc aatgatttaa cgatcaaaga
     1981 tcttgatcca ttgacaaaaa gtattgctgg gactattggt ttgcagccaa atccacatat
     2041 aacagaaaag gagggtaaac gaatttcatt gtacgctaaa gactttatgc gcaatggaat
     2101 acagcaaata attgacgcta gtaatgtaga cagcgattat gacggagtcc gacaggctga
     2161 gtgtcgtaca aagatacagt attaggcgtt tcctgttgca aagcaaggat taactcatga
     2221 gagtcacatc aagctatgat acctgtatca ttcatcagaa gtagtatggt aaggcatagt
     2281 atagtacgat gtgctagtat tgtacagcgg aatgttcgaa gtcaaatatg atttcaaacg
     2341 acagcaaacc ccctagaaaa tcacatttta tggcacagca tttgtctaaa gcctgttaaa
     2401 tgaagataag cgacgaaagc aattaaggaa cttgataaat aacaaagaaa aaagagata
//
LOCUS       DASPFX010000246         5335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1937789, whole genome shotgun sequence.
ACCESSION   DASPFX010000246 DASPFX010000000
VERSION     DASPFX010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5335
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1937789"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..88)
                     /locus_tag="VD694_05320"
     CDS             complement(<1..88)
                     /locus_tag="VD694_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW12161.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYK"
     gene            263..2239
                     /gene="acs"
                     /locus_tag="VD694_05325"
     CDS             263..2239
                     /gene="acs"
                     /locus_tag="VD694_05325"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HXW12162.1"
                     /translation="MSTDLKSNEVSNIYEDISRAKISLQGKKYDMLRKNALEDPELFW
                     DQQAKNLVWFKYWDRTLTWDPPFAKWFVGGSLNASVNCIDRHVDSQFKNKAAIIWQGE
                     NEKETRTITYYQLYKDVNIFANALKSLGVKKGDRVIIYLPMVPEVTIAMLACARIGAT
                     HIVVFSGFSANAIADRANDSESKIIITADGSYRRDKIIELKKIVDEAALSIPSLEKVI
                     VLKRVSNDIKMTNNRDVWWHDIVQNEQEQYCKPEILDSTHPLFILYTSGTTGKPKGVL
                     HSTGGYLTHLYTTAKLVFDFRPTDIFFSTADVGWVTGHSYTVYGTLMHGITEIMYEGT
                     PDYPTPDRYWAIVEKHGATILYTTPTALRMYIKYGDNIPMSFDLSSLRLLGTVGESIN
                     PDVWQWYFKTIGKENCPIIDTWWQTETGGIILSACTGINDDTIPMKPGSATFPIPGVD
                     MVVVDEYGKVIDANKKGYLMIKNPWPGMLMTLWKNDKKYQDVYWNKFKGMYYTGDYAL
                     MDEDGYFWLLGRSDDVLKVAGHRLSTMELESTFVSHKAVAEAAITGRLDQKKGESVIA
                     FLVLRSEYTPTEELRKVLTDHIRRTIGPIAAPEGIYFVSKLPKTRSGKIMRRLLKSIA
                     NKEDSIGDLTTLEDNTSVEEVKQVFNKLKSEIVE"
     gene            complement(2306..3052)
                     /locus_tag="VD694_05330"
     CDS             complement(2306..3052)
                     /locus_tag="VD694_05330"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW12163.1"
                     /translation="MFKTLFKKLGIEHEVDILPPEEKFFSGIVGYSDLKKLFMRSIIS
                     KEPSHILLAGPPASSKTIFLLQMMKGLDNSYFTDGTGTSGVGMIDYLFEHPSTKYLLI
                     DEIDKMKKSDQVALLNIMETGILSSTKVRKTRQLEMTLHIFATSNSLNDLSKPLKSRF
                     LIFYLPEYKYEEFVEISTKLLNERYKIEAGTASKVADKVWNELNSKDIRDVLKIGKMA
                     KHEETDSDIDWLISAYKKYAIKEGHETESS"
     gene            complement(3674..4774)
                     /locus_tag="VD694_05335"
     CDS             complement(3674..4774)
                     /locus_tag="VD694_05335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12164.1"
                     /translation="MISTVNNCPFCAQEFSRKYNKEVHIKRKHNGTRLPLNGAPNVMS
                     FGYPGYNPNQNQNQNPNYNPSNVLVNGEGIWGQTSVGNRQGDFMDSMIGFLRKQVEVL
                     RYRVEIKELSSRFMPPPHYPPVYSQQFYYPRTLGRFVQKSPNFSDLPFHQSSSTSSNK
                     FKSFQLISLKGLICDKCLTVDTIPCYQYKDGTLKEIHNHSCSEERVLNLERRDKRDIH
                     RFFVLLYRMLPKILAAKVLMCNKSEPKIYLWSMKCDGLASSLPTDVYKIDSWECPIRF
                     LDAFPSENRWLNQIRNSQKQENTIELESKEELLSFLEISVDSTMVILKVKRDSSSSSS
                     SESWDSYLIGVYLPEHNLEKINKPFIPQSFLN"
BASE COUNT         1725 a          930 c          953 g         1727 t
ORIGIN      
        1 ccttatacat tatttttgtc ttggttgctc ctccatttgc agcctctagg atcattgcca
       61 ctatttctgt tctgcttctg tatttcacaa tttagataca ctgaatttct ttattttaat
      121 atattgacac attctacagt aagaaacttc tatatcgata ttatacagta taatatggtt
      181 ttgtcgttgt tgacatatta agatacaact aactttccca taaggttttt aaaatttccg
      241 gatctttcaa cataatgtaa taatgtctac tgacctcaaa tctaatgaag tatcaaatat
      301 atacgaagat atctcacggg ccaaaatatc tctccaaggt aagaaatatg atatgctaag
      361 aaagaatgcg ttggaagatc cagaactgtt ctgggaccaa caggcaaaaa atttggtatg
      421 gttcaagtac tgggatagaa cattaacctg ggatcctcct tttgcaaaat ggtttgtcgg
      481 aggttcacta aatgcttccg taaattgcat tgatagacat gtggactcac aattcaagaa
      541 taaagcagcg attatttggc aaggagaaaa tgagaaggaa acgaggacga ttacttatta
      601 ccaattgtac aaagatgtca atatctttgc taatgcccta aaaagtcttg gagtaaaaaa
      661 aggcgatcgt gttataattt accttccgat ggttccggaa gtcacaattg caatgctggc
      721 atgcgcaaga attggcgcga cacatattgt tgttttttct ggttttagtg ccaatgctat
      781 agctgatagg gccaacgatt ctgaatccaa aattataata actgctgatg ggagctatcg
      841 cagagataag atcatagaat taaaaaagat cgttgatgaa gctgctctat cgatcccctc
      901 cctagaaaag gtcattgtat taaaaagagt ctctaatgat attaaaatga ccaataatag
      961 ggatgtatgg tggcatgata ttgttcagaa tgagcaagag caatattgta aacccgagat
     1021 tctggacagt actcatccat tgtttatttt atacacatca gggactactg ggaaaccaaa
     1081 aggcgtcttg catagtactg gtggttatct tacacattta tatactaccg cgaaattggt
     1141 atttgatttc agaccaacag atatattctt tagtactgct gatgttggat gggttacagg
     1201 gcatagctat accgtatatg gtactcttat gcatggtata actgaaataa tgtatgaagg
     1261 aacacctgat tatcctacac cagatagata ttgggcaata gttgaaaagc atggagcaac
     1321 aatattatat actactccaa ctgcattacg tatgtacata aagtatgggg ataatatacc
     1381 catgtcattt gatttgtcat ctcttcgtct attgggaact gtaggcgaat ctatcaatcc
     1441 tgatgtgtgg caatggtatt ttaagactat cggaaaagaa aattgtccta taattgatac
     1501 atggtggcag actgagacag gcggcattat actaagtgca tgtacgggaa taaacgatga
     1561 tactattcca atgaaacctg gttctgcaac gttccccata cctggagtag atatggttgt
     1621 tgtagatgaa tatggaaaag tcattgatgc taacaagaag ggatacttga tgatcaagaa
     1681 tccttggcct ggaatgctga tgactctttg gaagaatgat aaaaaatatc aggatgtgta
     1741 ctggaataaa tttaagggca tgtactatac aggcgattat gcattaatgg atgaagatgg
     1801 ttatttttgg cttttaggca gatcggatga tgtgcttaaa gttgcaggcc acagactaag
     1861 tacaatggag ctagaaagta cgtttgtttc acataaagct gttgctgaag ctgcgataac
     1921 aggaaggttg gaccaaaaga aaggcgaatc cgtaattgca tttttagtat tacgtagtga
     1981 atatacacct acagaagaac tacgtaaagt acttactgat catataagaa gaaccatagg
     2041 acctattgca gcaccagaag ggatctattt tgtaagtaaa cttcctaaaa cgagaagcgg
     2101 aaaaataatg cgaagactac ttaaatcgat agcaaataaa gaagattcaa taggtgatct
     2161 aacaacgcta gaggataata catcggttga agaagtcaag caagttttca ataagttaaa
     2221 aagtgaaata gtagagtagt ccatagagtg atacacagcc tataacgagt ttctctaaga
     2281 caagacaaat actgatatgt tatatctagc tagactctgt ttcatgccct tctttgatag
     2341 catatttctt gtatgcggaa attaaccagt ctatatcaga gtcagtttct tcgtgctttg
     2401 ccatcttgcc aatctttagg acgtctcgta tatccttgct attcagctca ttccatacct
     2461 tatctgcaac ttttgaagct gtcccagctt caattttata cctttcatta agtaactttg
     2521 tcgagatctc gacaaactct tcatatttgt attccgggag ataaaatatt aagaatcttg
     2581 attttaacgg ttttgaaaga tcatttaaac tattcgaagt tgcaaatatg tgtagggtca
     2641 tctccagttg tctggttttc ctgacctttg tagaactaag aatgccagtt tccattatgt
     2701 ttagtaaggc gacttgatca cttttcttca tcttatctat ttcatctatc agcaaatatt
     2761 ttgttgatgg atgctcaaac aagtaatcaa tcatgcctac tccgctagtt cctgtgccat
     2821 ctgtaaagta actattgtct aatcctttca tcatttgtag gagaaatatc gtcttgcttg
     2881 aggcaggcgg accagctagg agaatatgtg aaggctcctt gctaattatt gatctcatga
     2941 atagcttctt aagatcagag tatcctacta taccagagaa gaatttttct tctgggggta
     3001 gaatatctac ttcatgctcg atgcctaact ttttgaatag agtcttaaac actttatgtt
     3061 tatgtagaaa tagtttgtaa taaattagat cccgattata aattgtctat tatagttcta
     3121 tagttctata tatacttcca ttgaattagt aataatttat tagaatggaa taacagaatc
     3181 ttcgagctaa tatctttaat acagacacca aaaggcataa ttcaatcgat cttggatcga
     3241 agcactaatc caatgacata gtcaaaggga ttcctagcta aaaactcact aaatacagat
     3301 ttattaacta tgtacaataa tttaagaaaa ccctgataat cctcagtact agccagttct
     3361 gactttcact aatctgacag tcgatgatga tgtatataga ttcagataaa cacaactaat
     3421 taagcaatcc atgtcttatt agggagtaca cacaataatt taatgcagta acaattcaat
     3481 gacaaccttt tttgtcagtt tttgttagaa aatgataatt ataaagatcc acctcgtttc
     3541 cacttttagt actctattca tctacttctt gatcactatc actattgtct tcatctcttg
     3601 cctcctgtcc ttatctataa taaatattcc ttcagattgc tactaccaat aaggtacata
     3661 ttctacaagt atttcagttt agaaaacttt gtggtatgaa tggcttattt attttttcaa
     3721 ggttatgctc aggcagatat actcctatta ggtaagaatc ccaactttca gacgaagaag
     3781 atgatgacga atcgcgttta actttcaaaa ttaccattgt agagtcgact gaaatttcga
     3841 ggaacgacaa taattcttcc ttcgattcta actcgatagt attctcttgt ttctgactat
     3901 ttcttatttg attaagccat cgattttcag aaggaaaagc atcaaggaat ctgatagggc
     3961 attcccagct atcaatttta taaacgtctg taggtaatga tgaagctaag ccatcacatt
     4021 tcatactcca taaataaatt tttggttctg atttattgca catcaatact ttagcagcta
     4081 atatttttgg taacatccta taaagaagaa caaagaatct gtgtatatca cgtttatctc
     4141 ttcgctccaa attcaaaact ctttcctcgc tgcaagaatg attgtggatt tcctttaaag
     4201 ttccatcctt atattgatag caagggatag tatctaccgt taagcacttg tcacatatca
     4261 accctttcaa tgaaattagt tgaaaagatt tgaatttatt gctacttgtt gaggacgatt
     4321 ggtgaaatgg caaatctgaa aagttgggag atttttgaac gaatcgacct aaagtacgag
     4381 gatagtaaaa ctgttgtgaa taaactggtg gataatgtgg tggtggcatg aaccgactac
     4441 tgagttcctt gatttctact cgataacgaa ggacttctac ttgtttacgc aagaagccaa
     4501 tcatactatc cataaaatct ccttgccgat tacccacgct cgtttgtccc catatacctt
     4561 ctccattaac aagcacgtta cttggattat aatttgggtt ctgattctgg ttttggttcg
     4621 ggttataacc ggggtatcca aaactcatta cattgggtgc tccatttaaa ggtaatctcg
     4681 tgccgttatg ttttcttttg atatgaactt ccttgttata cttccttgag aattcttgtg
     4741 cgcagaacgg acaattatta accgtagaga tcatcctcca tctcgtaatt actcaccggg
     4801 gatcgctgta gtgcagatgc tgcgaagtga ctgcagttac tgcagtgact gcaaaaattg
     4861 gaactctatc ataagtatac aggcaaaaaa actctcttat aacgtcttcc tctatgagaa
     4921 tctctgggtt aaatgttatg atcatttttt aaagaactat gtctaaccag acaacaaacc
     4981 aacatctaca tgttatttaa atcgctagtg atatcaggac acccatccat caggcatgta
     5041 aactgaagct caaacagcta aatctggttt gttattaata attagagcta tgaataagga
     5101 aaggtatggc gacgacgata acgacttatt ccaaaattgt cttttcttaa agaatgattg
     5161 tagaatatct acatattttt atttaaatta aacaagaaat atgaaaaatt atttaaaaaa
     5221 atatcatgat taaggatcat gaagtaaaat caacaatcta aactatattc tactttacaa
     5281 tttacaattt acaatttcac gctatcatag tttaacaggt gtataaacaa cctgt
//
LOCUS       DASPFX010000247         4134 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_826280, whole genome shotgun sequence.
ACCESSION   DASPFX010000247 DASPFX010000000
VERSION     DASPFX010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4134
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_826280"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1348)
                     /gene="proS"
                     /locus_tag="VD694_05340"
     CDS             complement(<1..1348)
                     /gene="proS"
                     /locus_tag="VD694_05340"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HXW12165.1"
                     /translation="MTKEIGITVKKSDDFSEWYTQCVLKSSIADYSPSKGFIILRPYG
                     YAIWEIIKELLDYEFKKTGHKNGFLPVLIPESLLTKEKDHFEGFMPEVFWVTKSGDSN
                     LVEKLAVRPTSETLAYSMFSKWISSYRDLPLKLNFWNSALRAEIKSTKPLIRNSEFLW
                     QEGHTAHKDENEADNEVIIILDIYKNLIEQFLALPTLSGFKTDKEKFVGANYTTCLES
                     IMADGKALQMATSHNLGQNFSKPFEIKFLDKETVEQYVWQTSWGISWRVIGALIMVHG
                     DDKGLILPPKIAPTQVIIVPIYKDDSKTVVKDKAYELEQKLKDSKIRAQTDDRDEYTS
                     GWKFNDWEMKGVPLRINIGLRDMKENQVEFIRRDTKERFYVKEKELVNQAMSNLEKIQ
                     LNMFDRAKGHLEANIRSAATLEELLSILDTTGGFVACSWCGKRECEDLVKEKTTADI"
     gene            complement(1371..1664)
                     /locus_tag="VD694_05345"
     CDS             complement(1371..1664)
                     /locus_tag="VD694_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12166.1"
                     /translation="MSSENPDTKFIVPVKAVEKGIKLDDRAKKELQSIGMMDEKGKLK
                     LKGVSAKMLKRMKLEAVDCPVFEKELGFIQCYVCSNFHSRTMGKVYCKGEPLV"
     gene            1828..2241
                     /locus_tag="VD694_05350"
     CDS             1828..2241
                     /locus_tag="VD694_05350"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HXW12167.1"
                     /translation="MDDYYGALELNKNASIDEIRKSFRTLALKYHPDKNKNEGSKEKF
                     MKIVEAYEVLSDANGKKNYDDSITIKKNKPKYDFTWTPSADFERVYSYSRIKNTYVGG
                     GMWDIGEKATKGMWKATIILLASLASMALIILFLP"
     gene            complement(2493..3257)
                     /locus_tag="VD694_05355"
     CDS             complement(2493..3257)
                     /locus_tag="VD694_05355"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF010587.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HXW12168.1"
                     /translation="MSQDFTYLDYEKIAIRITKFISENIKSRNKDGVVIGLSGGLDSS
                     VCLVLASKALSKNKILGLIMPERGVTPHEDIDNAYALAKKLKIRYKEIHFESAKKTLL
                     RNLPTDRLASGNLSARLRMALLFHHAGMGNLLVVGTSDKSEIMIGYFTKYGDGAADIL
                     PIGELYKTQVRILGNKLGLSDKITNQPSSPRFWKGHVAEKELGLTYDEIDIILQYSLR
                     GDLDKCSLNKGKIDIVTELVRKSSHKREHIPVCNPF"
     gene            complement(3260..>4134)
                     /locus_tag="VD694_05360"
     CDS             complement(3260..>4134)
                     /locus_tag="VD694_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HXW12169.1"
                     /translation="TGNTSASAAMYAANENIECEVFVPKGEIAPGKLGQAFQFGAQVI
                     EVDGNFDDALAYSLNEAQQLGAYTVNSINPFRIEGQKTIVYRALEYLDWSPPDWIVYP
                     GGALGNTSSCGKALIELYNLGWIKKIPRLLIVNAEGASTFYELTNGLFGGQKLSWNGG
                     RPDLSLINEYYKDKGKQGVRPHTKATAIQIGKPANLIKALRSIDFTNGVVTQVSDKEM
                     SDGMALVGLNGFDCEMASGAVPAGIRKLRQQEIIKKDDVVVGILTGKQKDPKLSIDYH
                     MNQNNTFSKPPVAK"
BASE COUNT         1144 a          855 c          688 g         1447 t
ORIGIN      
        1 gtatatctgc cgttgtcttt tccttcacaa gatcttcgca ttccctcttt ccacaccagc
       61 tacatgccac aaatcctcca gtcgtgtcaa gtattgagag cagttcttct aatgttgcag
      121 cagatcgaat gttcgcttca agatgacctt ttgcacggtc aaacatgttt aattgtattt
      181 tttccaagtt agacatcgct tggttaacaa gttctttttc tttgacataa aatctttcct
      241 tggtatcccg ccttatgaat tcaacttgat tttctttcat gtctcgaagc cctatgttta
      301 ttcttaaagg cactcctttc atttcccaat cgttaaattt ccatccagat gtatattcgt
      361 ctctgtcatc tgtttgagct cgtattttag agtcttttag tttttgttcc aattcatatg
      421 ctttatcttt gacaacagtc ttgctatcgt ccttataaat aggaactata attacttgtg
      481 tgggtgcgat ctttggtgga agtatgagac ctttgtcatc tccatggacc attattagag
      541 cgccaatgac tctccaagaa attccccatg aagtttgcca tacatattgt tcgacagttt
      601 ccttatctag aaattttatt tcaaatggtt ttgaaaaatt ttgacctaga ttatgagatg
      661 tagccatctg taatgctttt ccatctgcca ttatcgattc taaacaagtt gtgtaatttg
      721 ctccaacaaa tttttcctta tctgttttga atccagagag agtaggtaat gcaaggaact
      781 gttctatcaa gttcttgtaa atatctagta tgataataac ttcattgtct gcctcatttt
      841 catctttgtg tgccgtatgt ccctcctgcc aaagaaattc tgaatttcta attagaggtt
      901 ttgtagattt tatttcagct ctcaaagcgc tattccaaaa gttcaatttt agtggtagat
      961 ctctataact tgatatccac tttgagaaca tagaatatgc aagtgtctct gaagttggtc
     1021 taactgccaa tttttcaacc agattactat ctcctgattt cgtcacccaa aaaacttcag
     1081 gcataaatcc ttcaaaatga tccttttcct tagtaagaag actttctggt attagtactg
     1141 gaagaaaacc gttcttgtgt cccgttttct taaactcata atctaataac tctttaatta
     1201 tttcccatat tgcatagcca tatggacgta gtatgatgaa acccttactt ggtgaataat
     1261 ctgctatgct tgacttaagt acacattgag tataccattc actaaaatca tctgatttct
     1321 ttacagttat gcctatttct tttgtcaagt cagattacta cttggtaaag ttatactaat
     1381 ggttctccct tacaatagac tttacccata gttctactgt gaaagttact acatacatag
     1441 cattgtataa aaccaagttc cttttcaaaa actgggcaat caacagcttc gagcttcatt
     1501 cgttttagca ttttggcact tacacctttc agttttaatt ttcctttttc atccatcatt
     1561 ccgatggatt gtaactcctt ttttgcccta tcatccagtt tgataccttt ctctactgct
     1621 tttacaggga caatgaattt agtgtcggga ttttccgaac tcatgaataa taatggtatt
     1681 ttgtccgtgt atatgatgct tgctatctta ttagaacact atgtacacaa acactttgga
     1741 ccgactatgt accgataggg ccatcatgca tatcagaaca gatctctatc tgaaatgatt
     1801 atttatttga tagatgtgaa ataatgcgtg gatgattatt acggcgcact tgaattgaat
     1861 aagaacgcgt caatagatga aattaggaaa tctttcagga cacttgcatt gaaatatcat
     1921 cctgacaaaa ataagaatga aggttcaaag gaaaaattca tgaagattgt tgaagcatat
     1981 gaagtcttgt ccgacgctaa cggaaagaaa aattatgatg attcaattac cataaaaaag
     2041 aataagccga aatacgattt tacgtggaca ccgtccgctg attttgaaag agtttacagt
     2101 tattcaagaa taaaaaatac atacgtggga ggagggatgt gggacattgg tgagaaggcc
     2161 accaaaggaa tgtggaaggc aacaatcata cttcttgctt cactggcgtc aatggctctg
     2221 ataatactgt ttctccccta gatacgttta tcctagaccc ttcggccttt cttagataat
     2281 gtttctttat tttttttgcc atatttatac caaaaaaatg ctgcaagggc taaatttgca
     2341 attgatgtga ataggaaaac cggagaattt gtttgaataa atatacccag tccataaacg
     2401 cctagaatag tggcaatgat ggaaattatt tttaactgat tgctagatat tggcaacctt
     2461 attcaaagga tttaatcaat ataaaagtca aactaaaatg ggttgcacac tggtatgtgt
     2521 tccctcttat ggctagactt tctaactaat tcagttacta tatctatttt tcccttattc
     2581 aaagagcatt tatccaaatc tccgcgaaga gaatattgca aaattatatc aatttcatca
     2641 tacgtaagac caagttcttt ttctgccaca tgccccttcc aaaacctggg gctgcttggc
     2701 tgatttgtta tcttatctga aagtcctaat ttgtttccga gtatcctaac ttgagtcttg
     2761 tatagttctc ctattggtag tatatccgcg gcaccatcac catattttgt aaaataacca
     2821 atcatgattt cactcttatc tgaagttccc accaccaata ggtttcccat acccgcatga
     2881 tggaatagta gcgccattcg cagtctagct gaaagatttc ctgaagcaag tctgtcagtc
     2941 ggtaggtttc ttagcagcgt tttttttgcg ctttcaaagt gaatttcctt gtatctaatt
     3001 ttcaattttt tcgcaagggc gtaagcattg tcaatatcct catgtggcgt aacacctcgt
     3061 tctggcatga taagccctag tatcttattc ttactcagtg ctttagatgc taacactagg
     3121 caaactgaag aatcaaggcc tccacttagc cctattacca ctccgtcctt gtttctggat
     3181 tttatgtttt cagaaatgaa ctttgtaata cgaatggcta ttttttcgta gtctagatat
     3241 gtaaaatcct gcgacattcc tatttcgcta caggtggttt ggaaaatgta ttgttttgat
     3301 tcatatggta gtctatagat aactttggat ctttttgttt tcctgtcaat attcccacta
     3361 ctacatcgtc ctttttaatt atctcctgtt gccttagttt tctaattccg gcaggtaccg
     3421 ctcctgatgc catctcacaa tcaaaaccgt tcaaaccaac tagtgccata ccatcactca
     3481 tttctttgtc ggaaacctgt gtaactactc cattagtaaa gtctatagat cttaatgcct
     3541 tgatcaaatt tgcaggcttg cctatttgga ttgcagtggc ctttgtgtga ggtctgacac
     3601 cttgcttccc tttatcttta tagtactcat tgatcaagct gaggtccggt ctaccaccgt
     3661 tccaagatag tttttgtccg ccgaacaatc catttgttaa ttcataaaaa gtacttgctc
     3721 cttcagcatt tacaatcaac agcctgggga ttttttttat ccacccgaga ttgtaaagtt
     3781 ctattaacgc ttttccacaa ctagaagtgt ttcctaatgc cccacccgga taaacaatcc
     3841 aatctggcgg actccaatcc agatattcca gtgctctgta tacaattgtc ttttgtcctt
     3901 caattctaaa tgggttgata gaatttacag tgtaggcccc caattgttgt gcctcattca
     3961 acgaatatgc gagcgcatcg tcaaagttgc cgtcaacttc aattacttgt gccccaaatt
     4021 ggaaggcctg acctagtttt cccggcgcaa tctcgccttt tggaacaaat acttcacatt
     4081 caatattttc attcgcagca tacattgcag cagatgcgga cgtatttcct gtgg
//
LOCUS       DASPFX010000248         3878 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1404190, whole genome shotgun sequence.
ACCESSION   DASPFX010000248 DASPFX010000000
VERSION     DASPFX010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3878
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404190"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VD694_05365"
     CDS             <1..482
                     /locus_tag="VD694_05365"
                     /inference="COORDINATES: protein motif:HMM:NF015674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF308 domain-containing protein"
                     /protein_id="HXW12170.1"
                     /translation="NPGLTAVLVVFTASILLLIVGIERVITGLFIQKKNRSRLVTVGL
                     GILIILIAVAAMAFPVGTTVLLTLVLAVALLFDGISRIVHGIGDKESQGWARALSIGV
                     GGMEVALSGLIMVSPAFGAATIGFLIGIALLLAGIQIVVAGISGRRKQMKILDTRND"
     gene            762..914
                     /locus_tag="VD694_05370"
     CDS             762..914
                     /locus_tag="VD694_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12171.1"
                     /translation="MLRSCSGSSGKTKFCISCGNKATQEALFTVGDGVIVIEKYCDTC
                     AEKQVK"
     gene            complement(1388..1750)
                     /locus_tag="VD694_05375"
     CDS             complement(1388..1750)
                     /locus_tag="VD694_05375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12172.1"
                     /translation="MNSKHFFAKAISCWRLERAGAVMNRKNLKNNSDYDSLESEDMKL
                     RQSINTLARKVSTLLDVGAAAEIQEEIQNRVMLAIKASVQSLEEQSGVKPTLTDTEIQ
                     NHLKMVVQELRDSKIARK"
     gene            2898..3194
                     /locus_tag="VD694_05380"
     CDS             2898..3194
                     /locus_tag="VD694_05380"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW12173.1"
                     /translation="MNSSNRSKHEIFSDILRAIDNDETTMNEIMFKTYISYFLLKKYL
                     TFLIQQGLIGYRKEEKRFRITQKGFHVIDVYTKMDELLVRKTRHKRPEYFVSFP"
BASE COUNT         1240 a          645 c          673 g         1320 t
ORIGIN      
        1 caaatccggg tttaacagcc gtgttggtgg tgtttacagc ttcaattctt ctattaatag
       61 tagggattga aagagttatt actggtttgt ttattcaaaa gaagaacagg tctcgacttg
      121 ttactgttgg attaggaata ttaattatac taatagcagt agcagctatg gcgttccctg
      181 taggaacaac agtattgtta acgctagtat tggcagtcgc attactattt gatgggatct
      241 caaggattgt acatggtatc ggagacaaag aaagtcaagg atgggccaga gcacttagta
      301 ttggtgtagg cgggatggaa gttgcattat ctggactaat aatggtttct cccgcatttg
      361 gtgcagctac tataggtttt ctgataggaa tagcacttct tctggctgga atacaaattg
      421 ttgtagcagg aatatcagga agaaggaaac aaatgaaaat attagacaca agaaatgatt
      481 gagagcagtg agaagtaagc tagctgagcc tagtacttca aattttttgt cgaagtttga
      541 acacatagtc tccaatttta gaaatctcta acctctggcg agctataaga gacttccact
      601 acaaaatcct cattaactta cattatggag ctatactata ataatgagta acaatccaaa
      661 attcatattt gatgcaagta ccatggttgt agtattgcca agaaatataa ccaatgaaat
      721 gttagtaaga gtgaagcaat agaatggaaa aaatattttc aatgttaagg tcatgcagcg
      781 gtagtagtgg aaagacaaaa ttctgtatat cctgtggtaa caaggctaca caggaggcat
      841 tattcactgt aggcgatgga gttatagtta tagaaaaata ctgtgacaca tgtgcagaaa
      901 agcaagtaaa gtaactgctt ctaaaagacc aattgtgaga aattgtggtt ataaaaatca
      961 caggtcttta cctaaacaga taagactcag ggagcctgat cttgctcaat aaaggggaca
     1021 gttgggtgtg gctcgggaat acaaaacgat gttatgagtt ttgtactcgc gacagctgct
     1081 atgcttaaac ttgaacaatc aataccattt gacagaatcc aaatctaaga cgtaaagtag
     1141 atgtcaaatc tattagctga tccaaccaaa ttcaacaatt aggctgggaa ccaaagaaaa
     1201 ctattaaaga tataatcgaa gactttataa attactatct agtacgagat aatagaaaaa
     1261 atgtattgtt gtagatgtaa caatacattt gttcacattt tatcgaacac tattcagcta
     1321 ttatataatt tgataaagac gcattgacaa aatactggat gtaatgttta ggacatgtgc
     1381 ctcttattca ttttcttgcg atttttgaat ctctaagttc ttgaaccacc atttttagat
     1441 gattttgtat ctcagtatct gttagagttg gttttactcc gctctgttct tccaatgatt
     1501 gtacacttgc ttttattgcc aacattactc tattttgaat ctcttcttga atttcagccg
     1561 ctgcaccaac atctagtaat gtggatactt ttctggccaa tgtatttatt gactgacgta
     1621 gcttcatatc ttctgattct aatgaatcat aatcggaatt atttttaaga ttctttctat
     1681 tcataactgc tccagctctt tctaatcgcc aacatgagat ggctttcgca aagaaatgct
     1741 tcgaattcac gcctgaactc tattctacca cggcagccac aattaactag agcacaaacg
     1801 atctcatttt ttgcttttga taagaacttc atttctgcga gttgccttcc ctaataaata
     1861 ttcggtaatt attgacatta atatccgcta atacccatta taggtttgca tcctaatata
     1921 tacccagctt cttcagacca taaagctcga tagctgcagg ccctgagtaa cccggggcct
     1981 gatgtttgtt atctttattt cagaatataa tctaatgaat agatgtagta tttttaatga
     2041 ctcaagtaaa catatatttt caattgttat ctttgagtcc gagttaccac atgttcacta
     2101 ttttggtaat caattttaga gactcatcat ttagagcttt aaaatgggat aaaatttgaa
     2161 taaatcgaat caatctaaac atgaaatatt ttcagatatt ctcatggccg ttgagacgga
     2221 cagggtaact ataagcgaaa ttcaattcaa gacatatact tcgtatcagc actatgcacc
     2281 gtaactaaaa taccctggac tgtctttttc atactttgat tttagctctt gagcattaat
     2341 tcttagtttt attcttccgt cttgatacgt ttctagtcca tccacatgac ccacatgttt
     2401 gttatcgctt gtataaacag gcttggttat tatttcgccc caatcaaaat ctcatttcat
     2461 cgttattcat ggatgcgttt atctacacag ttgagcttaa taagcctctt gggcccatag
     2521 accagggata tctaatgact gatcaaaaat gattttgggg cggtaatcct gacggcgatg
     2581 ataatgatta tcaattattt agtatttttg gaaattcttt gattgtctga tgagatggta
     2641 cgcaatagca tctttgacta ttctgacaaa tgataagtgt ttaaaattat actggtatct
     2701 catattttat attattaatt caatatattt taatcaaatc atctgagatc cggcactttt
     2761 tgttaatatc atcaaaatat ctttcataaa atattatata tgttactgct gaacagtata
     2821 ttatatgtta ctgctcaata gtgacgatca atggaataaa ttggacaatt catttacaga
     2881 ttcgaatgga atagaacttg aatagttcaa atcgatccaa acacgaaata ttttcggata
     2941 ttcttagggc tatcgataac gacgaaacaa ccatgaatga aattatgttc aaaacgtata
     3001 tttcatattt tctcctgaaa aaatacctga ctttcttgat tcagcagggg cttattggtt
     3061 atagaaaaga agaaaagaga tttagaataa cgcagaaggg atttcatgtt atagatgtgt
     3121 ataccaaaat ggatgaatta ttggttcgaa aaacacggca caaaagacca gagtactttg
     3181 tctcatttcc gtgaggcatg tttaattaat tgacataata caatagattt catatatcag
     3241 gctatagaag aactagagtt actgatattg aatatcttgc tccaatatct attaaccaat
     3301 tttatagatt caaaaatact gtcccaatac gatgtcgata atttaattga actgtctttt
     3361 atcttgtcat taagttggtt ttgcatataa tagtgagtat taatataatt attattcata
     3421 actaattgcg aagatattgg cttttctatt agtttttgtg tgtcttgtaa atatatatta
     3481 tcatcataac ttagagtcga agcattatga cttgaattct ttcaactgta ttcatagagt
     3541 ctcattatgt agtatagttg aataagagtt agtcatcgtc atcgtcatcg tcatcatccg
     3601 attcaatctc taattctttg atgttaaatc cctgttcttt cgcaaaatta actaactgtg
     3661 taactttttg cagaatctct ggcatttcag ttaatttaga tagtcatacc aattgggctg
     3721 actatctttt tttgaagaca tacattttca ggctaagact gaatccaaat actgctaata
     3781 ctgtagcgct tttgagttca tatctccctc agaaggcttg tctttactgc ctcgaactct
     3841 ttatctgata tcatgccttt ctctttcaaa actgagag
//
LOCUS       DASPFX010000249         3544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_17461, whole genome shotgun sequence.
ACCESSION   DASPFX010000249 DASPFX010000000
VERSION     DASPFX010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3544
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17461"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VD694_05385"
     CDS             <1..268
                     /locus_tag="VD694_05385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12174.1"
                     /translation="DFDYYIIVDRTEPKRIVSLIAMKKDHLPQPSWDNILGNRLAKLT
                     ISKSDAYILKSELMPKDTNNFYAYRLSGETSGLVMFAFQICGRK"
     gene            complement(319..1005)
                     /locus_tag="VD694_05390"
     CDS             complement(319..1005)
                     /locus_tag="VD694_05390"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HXW12175.1"
                     /translation="MQLTNRFQIKSEHRIIDFLNSQPVGRICSIDIDGFPQVIPMNFV
                     FATTRHEMKMNKHSTPFNSDAIYMHSHPLGEKIENIKRNSKVGFEVDQHVCFLPSYYF
                     HPTDASQADTLYISVVIKGNAYLVDGAIEKAFALNLLMKKYQTEGIYESLNQSMRSVR
                     AVSVIKIVPQDIRGKYKIGQHWTPNYRLKIAEKIKRREGIINSRQILNIMGLEEDRTG
                     KLYVKREPVM"
     gene            1477..2283
                     /locus_tag="VD694_05395"
     CDS             1477..2283
                     /locus_tag="VD694_05395"
                     /inference="COORDINATES: protein motif:HMM:NF014025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HXW12176.1"
                     /translation="MFNVEISIFIDLLFQSLNLIQNYSLSFSSLISLAVSGPLNFMNS
                     INVQDLLTSTIALFVVMDPIGVIPLYVSLTRNVSHNERKVISSNAVITAGILLLVFAI
                     AGTTILSIFGVTISSFLIAGGILLFIVAIELLTRGEWTFGNPRAISNTRKKSLDTANN
                     PIPDTESSHGGESGVVPLAFPLLAGPGAITSVMISYQSNGLLISILSIAVVIGLTFMI
                     LRIAESINRLLGQRGSMIITRVFAVIVAAIAVQYIIQGAGQTITDLRLDI"
     gene            2694..3329
                     /locus_tag="VD694_05400"
     CDS             2694..3329
                     /locus_tag="VD694_05400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HXW12177.1"
                     /translation="MADHGIFGGMVELITDWIANYGYPSVFAAALLENLFPPIPSELV
                     FPLIGFTAQTNDLGITEAIGMAIIGAVGSTVGAIIIYYTALKLGLPVITRIGKRYHLI
                     SESDIKKTETWFVRHGELAVFLGRMAPGIRELISIPAGIARMNILKFTFFTFIGSCVW
                     SIFLTLIGFFIGDAWIRFYGDYSQVFDIAGISLILAIIAIVALKYYKGRHN"
BASE COUNT         1059 a          644 c          650 g         1191 t
ORIGIN      
        1 cgacttcgat tattacatca tagtcgatag aactgaacct aagagaatag tgtcgctaat
       61 tgctatgaaa aaggaccatc ttccccaacc gtcgtgggac aatattttag gcaatcgtct
      121 tgcgaaactc acaatctcaa aatccgatgc atacatcttg aaatctgaac tcatgccaaa
      181 agatactaac aatttttatg cctacaggct ttcaggcgaa acatctggac ttgtaatgtt
      241 cgcatttcaa atctgcggac gtaaataact aagaaataat atccaatttc ccaaacgggc
      301 accaggagga gaattaggct acataaccgg ttctctcttt acatatagct ttcctgtgcg
      361 atcctcctct aatcccataa tgttaagaat ttgcctagag ttaatgatgc cttcgcgtct
      421 tttaattttc tctgctatct ttagtctgta atttggcgtc cagtgctgac cgatcttata
      481 ttttcctcgg atatcctggg ggacaatttt aatcacactg actgcacgta ctgatcgcat
      541 ggactgattt agtgattcat agattccttc agtttggtat ttcttcatca acaagtttaa
      601 tgcaaaagct ttttcgatgg caccatcaac caagtacgcg ttacccttta ttacaacact
      661 aatatagagt gtatctgctt gtgacgcatc tgttggatga aaataatacg agggtagaaa
      721 gcagacatgc tgatccactt caaatccgac ttttgaattt ctcttaatat tttcaatttt
      781 ctctcccaac ggatgcgaat gcatgtagat cgcatccgaa ttgaatggag tagaatgttt
      841 attcattttc atctcatgcc gtgtcgttgc gaaaacaaaa ttcatgggta taacttgagg
      901 aaatccatca atatcaatgg aacatatcct tccaaccggt tgactattta agaaatcgat
      961 tattcgatgc tcggatttta tctgaaatct atttgtcagt tgcatctcat attgcttttt
     1021 gtttactatc tcctttctaa taaactaatg ttgctgcatt aaaaaacctt tgaaatttca
     1081 tatttcaata tcatggatct gagattgttt ttataagata agatttatta ttttcggaga
     1141 tttcaaattc aaaactaacc aagattaaat gttaaaggtt ttaactattc gtaatatcaa
     1201 ctatatggag tagctccata tccttaccac aacatagtac gaagttctat tgcattaaag
     1261 gttctctcag aggtttttac cgtgaaggaa ttctaaatac aagaacagat ccttatggat
     1321 aattttcttg ataagataat tttctctttt gcataaaact aatcatccaa tacaataaag
     1381 gatccattta tcacagacaa aatctgagaa gtataacaat cctgattaaa tataattgaa
     1441 cataacttaa ataatgataa tagtcattag tctgtcatgt tcaacgttga aatttcaatc
     1501 tttatcgatc ttcttttcca atctttgaat ctaattcaaa attattctct ttcattctcc
     1561 tcattgattt cgttggctgt atctggacct cttaatttta tgaatagtat aaatgtacaa
     1621 gatcttctta cgtccacaat cgccttattt gtagtaatgg atcctattgg tgtaataccc
     1681 ttatatgttt cacttacgag aaacgtgtca cacaatgaac gtaaggtgat ttcctctaac
     1741 gcagttataa ccgcaggtat cttgttgctg gtattcgcaa ttgctgggac tacgatcctg
     1801 agtatttttg gagtaaccat ttccagcttt ttgatagctg gcggtattct tttgtttata
     1861 gttgcaatcg aattgctgac gcgaggagaa tggacttttg gcaaccctag agctatttca
     1921 aatactagaa agaaatctct agatacggca aataatccga tccctgatac tgagagctcg
     1981 catggaggcg aatcaggggt agttcctcta gcatttccat tactggcagg gccaggagct
     2041 attacatcag taatgatctc ttatcagtct aatggtctat tgatttcgat attgtcaatt
     2101 gcagttgtca ttggtcttac ttttatgata cttagaatcg ctgaatcaat aaacagactg
     2161 ctaggtcaac gtgggtctat gatcattaca agagtttttg cagtgattgt tgcagctata
     2221 gcggttcaat atatcataca aggagcaggt caaaccatta ctgacttgcg acttgatatt
     2281 taggtcaaaa catacgtccg tagctctttt gaggattgcc tccagtgtta gaagtttatc
     2341 cgtttattcc aacgagtaac attttctctg agctatttag tcatagttgg ttaacatcta
     2401 ttatccaata attgctgtaa gtaaatgata tgcaggccgg ttgcagtaac gacgcctatt
     2461 aagggaaggg aatttaaatt atcatttact cgtgttcaca aagaccgtta tagatgtacg
     2521 taatcgatca gcttgatttt gaagaaatgt gaaattacta aaattgacaa acaaggaaaa
     2581 tttaatatta agcctagaaa aattggagat ctcccaccaa attgtttcta tcctaccttg
     2641 tgccgatcat tctattagaa ctagtatttg cttcgtcaaa tactgagtcg aatatggctg
     2701 accacggcat ttttgggggt atggttgaac taataacgga ctggatagct aattatggtt
     2761 acccatcagt attcgctgct gccttattag aaaatctttt tccacccatt cctagcgaat
     2821 tagtctttcc attgatcggt ttcactgctc agacaaatga tcttggaata actgaagcga
     2881 tagggatggc tataataggg gcagtcggct caacagtcgg tgcaataata atatattata
     2941 ccgctctgaa gttaggactg ccggtgataa ctaggattgg taaacgatac cacctgattt
     3001 cagaatcaga tataaagaag acggagacat ggtttgttag acacggtgaa ctagcggtat
     3061 tccttggtag aatggctcca ggaattcgtg aattgatttc cattcccgca gggatcgcaa
     3121 gaatgaatat tcttaaattc actttcttta catttatagg gtcatgtgtt tggagcatat
     3181 ttctaacatt gataggattt ttcataggag atgcatggat taggttttac ggtgattatt
     3241 ctcaagtttt tgacatcgca gggatctcat tgattctggc aataattgcg attgtcgctt
     3301 taaaatatta taagggaaga cacaattaac atttgtattg actgttcggc agacattgca
     3361 tacgttggtt gaaccgtttt aggacaatag ctaaacataa agtttctatc tattagtact
     3421 atctagttga ttcaatagta tgtctgttgt atagtggata ttgtttgtaa cgattgacac
     3481 tatcaattcg gatcgagggc tttattactt acaattgact atagtgcaaa ttttggcagg
     3541 agga
//
LOCUS       DASPFX010000250         3765 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1621509, whole genome shotgun sequence.
ACCESSION   DASPFX010000250 DASPFX010000000
VERSION     DASPFX010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1621509"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..183
                     /locus_tag="VD694_05405"
     CDS             <1..183
                     /locus_tag="VD694_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HXW12178.1"
                     /translation="DRTMISNLLTDHEQIIRNLRKDADRCEDEYHDMGTNDFVLEAMQ
                     KHEKIAWMLRAHMDKV"
     gene            469..1407
                     /locus_tag="VD694_05410"
     CDS             469..1407
                     /locus_tag="VD694_05410"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12179.1"
                     /translation="MIETVWNEMQLVAADICNNNPITLEGNKTLYDARNVLLKYNISR
                     VIILKDRQNEKPAGIVTEKDIVRFLYAEFPRRSLDEIRLDEIITNQQLITVEGGTNVG
                     DCAKLMLNNNISSLVIVKANNDNSILNGIITKSDLLDAYARSFGGDVTINEYMTKKVL
                     TVKPDESVHIVLLIMADGNVSRVIVGDNNSKPVGIITSHDLLPASTLLIADKSKPSLS
                     KCQIKGKDIEMNESTGSTAAHSGGLPYGMKRILLAQDIMKFNPIMVTDYSNLVDAALI
                     MRGNRISGLPVVDSNDKLVGIITKTDIIRAIADDRQ"
     gene            complement(1696..2241)
                     /locus_tag="VD694_05415"
     CDS             complement(1696..2241)
                     /locus_tag="VD694_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12180.1"
                     /translation="MDNSQRIYLFISIFALSSIVVTGFQGQQYTFGQANQTAASSNGE
                     TFRSQFDTFVSSEPAGYGMYDEKESNVFVPGETFLLYVEPVGYTYGNVTDKNGDQLYT
                     MNFTADFTISTPNGTILAGQEDLPLSNLISHHQNKELMLQMSIDQSSPFPPGDYVLRY
                     TFTDENSGESFDIEKNVTVQG"
     gene            2529..3023
                     /locus_tag="VD694_05420"
     CDS             2529..3023
                     /locus_tag="VD694_05420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12181.1"
                     /translation="MSNKGEELNMMTSFYHKYKDNILFNKNLLISGIISFLVGALFTQ
                     IYAQYDENHVVNSLITLIIGYAVYIPLFAFLFYRDNKAKYVDPQTGKKNSSRIKNDVK
                     KLFTAFSISEAIFVASKTYIHYSLLVSSVEPYQAYAVAEFISWVIYFISINVGAKAVK
                     LFEN"
     gene            complement(3098..3454)
                     /locus_tag="VD694_05425"
     CDS             complement(3098..3454)
                     /locus_tag="VD694_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HXW12182.1"
                     /translation="MSKSDLHQRLNRASEITLSVKGRKSGKDIPRPVWFVHEGNTLYL
                     LPVQGSDTNWYKNFQEDKTLKISVSGEEVRPTKGKPISDSNTVDDILNKFRSKYGEAD
                     VKKYYPKPDVAVEVPL"
BASE COUNT         1244 a          638 c          736 g         1147 t
ORIGIN      
        1 gacagaacaa tgatttccaa cctactgact gatcatgaac aaataattag aaatttgcgt
       61 aaagatgcgg atagatgtga agatgaatat catgatatgg ggacaaacga ctttgtactt
      121 gaggctatgc aaaaacatga gaaaatagcg tggatgttaa gagctcatat ggataaagtc
      181 tgaagaacaa ctttactctc actattagat ttctttctcg aacataaggg agtttgctta
      241 tccagcggct gaaatggcag ataaaacggg atcgtaattt agaactgtat tcggagaaat
      301 atccgattta gaaagatcag ctaatacatg catagaaagt tggaaaagcg aaaatataca
      361 agctgaaaca gacttgagag ctgtgtccta aaacgactct aattactatt ctgtcatttt
      421 gcaataaaca aattaaagga ccaccgcatt agatgatatg aaagaataat gatcgaaacc
      481 gtatggaatg aaatgcaatt agtagcggcg gacatatgta ataataatcc cattacgctg
      541 gaaggaaata agacattata tgatgcccga aatgttttac ttaaatataa tattagtaga
      601 gtcataattt taaaagatag gcagaatgaa aagccggcag gaattgttac agaaaaagat
      661 attgttcggt tcctttatgc agagtttcct aggagaagtc ttgatgaaat aaggttagat
      721 gaaataataa caaatcaaca actaatcact gttgaagggg gcacgaacgt aggtgactgt
      781 gcgaagttaa tgttaaataa taacataagt tccttagtga tcgttaaagc taataatgat
      841 aatagtattt taaatggtat tataactaaa tctgaccttt tggatgcata tgcaaggagt
      901 tttggcggag atgtcacaat aaatgagtat atgacaaaaa aagtattgac ggttaagcca
      961 gatgaatctg tacatatagt actgttgata atggctgatg ggaatgtatc gagagtaata
     1021 gttggagata ataatagtaa accagttggc attattacta gtcatgattt attgcctgct
     1081 agcacactat taattgcaga taaatcaaag ccgtcacttt cgaaatgtca gataaaaggg
     1141 aaagatattg agatgaatga aagcacgggt agcacagccg ctcattccgg tggtttgcca
     1201 tatgggatga aaagaatact attggcccaa gatataatga agtttaaccc gatcatggtc
     1261 acagactatt ccaatctagt agatgcagcg cttattatga gaggaaacag aataagcggc
     1321 ctcccagttg tagattcaaa tgataagctc gttggaataa tcacgaaaac agatatcatc
     1381 agagcaatag ctgacgatag gcaataacgt atatttcaaa tagccaaacg ggtagcattt
     1441 tcaactagtc ttggtagaca ttttcaatca atcgaagtga gtacgttatt gatggtggaa
     1501 cgactccagc agtctaatcc cttccactgc agatgtgtat cgatcggtat tataggggta
     1561 ggaactatcc aaatcactta ccaatagaag atggcaatac aacagggtcg tgtcgtatga
     1621 taaccatcag ctcaatacag accgatacta attcaaatgt tgtgtgataa ggatgcaaag
     1681 aattagttta tgtaatcacc cttgcactgt aacattcttc tctatatcaa aactctctcc
     1741 ggagttttca tccgtaaacg tgtatctaag aacatagtcc cctggtggga acggagagga
     1801 ttggtctatt gacatctgaa gcatgagttc tttattttga tgatgagata tcaaattact
     1861 caatggcagg tcctcctgtc cggctaaaat tgtaccattt ggggttgaaa ttgtgaagtc
     1921 agcagtaaag ttcattgtat ataattgatc tccattttta tctgtgacat ttccgtaggt
     1981 gtagcccaca ggttctacat atagcaaaaa tgtctcccca ggtacaaata cgttggattc
     2041 tttttcatca tacattccgt atcctgcagg ttctgaagaa acaaaagtgt caaattgaga
     2101 tctaaaggtt tctccatttg atgatgccgc tgtctgattt gcctgtccaa atgtgtattg
     2161 ttgaccctga aatccagtca ctacaattga agataaggca aatatgctaa tgaaaaggta
     2221 aattctttga ctattgtcca ttacactcta gaggacatta caaccctgat ttattttttg
     2281 ttctgaggaa ggttaaatgg ctaacatatg gaagtcaaac cactgtcact ggtttgactt
     2341 cttttttggc aagggcgatc aagaccttga gattgttatt tttctggtga atagaggaac
     2401 cagtcgaatt tcttgggttt ttatctgctt ggccctctag ttaccttcaa gcaaactgcc
     2461 attactttga aactaacccc gcggtaatat tataatgaca acacaatctc tagattttta
     2521 aatctatttt gtcaaacaag ggggaagaat tgaacatgat gactagcttt taccataaat
     2581 acaaagacaa cattttattt aacaaaaatc tccttatctc aggaataatt tcatttcttg
     2641 ttggagcctt atttactcaa atctatgctc aatatgacga aaatcatgtc gtcaattcat
     2701 taattacatt aatcattgga tatgcagtct acattccgct cttcgcgttt cttttctata
     2761 gagataacaa agccaagtat gtagatcctc aaacaggtaa gaagaattct agcagaataa
     2821 aaaatgatgt caagaaatta tttactgcct tttctatctc cgaagcaata tttgttgcat
     2881 caaaaacata tattcattat tctttactcg tgtcatctgt cgaaccctat caggcctatg
     2941 ctgttgctga atttatatcg tgggttatat actttatttc aattaatgta ggagcaaaag
     3001 ctgtaaaact gtttgaaaat taatcgtcta aattgtatga tatagtaaca aagttcgctt
     3061 tcgtgcagta ttaaacggaa agtttttggc aggtctgtca gagcgggact tcaactgcta
     3121 catctggttt tggataatac tttttcacat ccgcctcgcc atatttggac ctgaatttat
     3181 tcaatatatc gtcaaccgta ttactgtccg atatcggttt accctttgta ggtcgtactt
     3241 cttctccact tacagaaatt ttcaatgttt tatcctcttg gaagttttta taccaattgg
     3301 tgtcagagcc ctgaactgga agcaaatata gagtgtttcc ctcatgcaca aaccagactg
     3361 gccgagggat atctttgcct gattttctac ctttaacgct gagtgttatc tcagatgctc
     3421 tattcaacct ctggtgaaga tcggatttgg acaatgacaa tctatgcttc atatctcaga
     3481 tatatgttac tcactacagg ataagattac aaaatgcgtc gaagtcgctg gagttgtgga
     3541 gttgtgcaga atagtataac acacagaaac ggaacaatgg gactatatcg gtttaacatg
     3601 attaagaatc tatattggaa atagaaaaat aatgacgtgt gggctggtta gaatctttta
     3661 aacaagatat gaagaataag aatgctaata ctccgagcag caatgtcatt attagggata
     3721 gcgttatcat acctacaaga caatgggtga ctttcaaaga gcact
//
LOCUS       DASPFX010000251         2465 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_247086, whole genome shotgun sequence.
ACCESSION   DASPFX010000251 DASPFX010000000
VERSION     DASPFX010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2465
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247086"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..>2465
                     /gene="polC"
                     /locus_tag="VD694_05430"
     CDS             61..>2465
                     /gene="polC"
                     /locus_tag="VD694_05430"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HXW12183.1"
                     /translation="MNHAVVVGTQIKMDVPGKASTIALVDSIEPPLVKLDDGDVLYVS
                     TVQQAIEVRSKVEKIIYLGDILISYGDFLENNAQLLPASYVEEIWALQLKSKLISLET
                     NQYPSSSSDTSLILSEVEEEKDGRINHKRIVKLVEEPLIIFPTVKEAFEISRMYHVPL
                     HPRYSFYWESVSIDEVLLLKDQLVTSKQNNDEIVSVDLTYKPELKDILERLGVVHSVE
                     NGSIRISNTDQIYALRSLLLESKPYSTELSTSRSISPESSETNDILGFISRISGVEVK
                     SKFASSIAVRVGRPEKAAERKMKPPVHVLFPVGTKGGTTRDILKAAKGESFYAEIANR
                     FCIDCNLPSVGTYCRKCGAATPIRNLCIFCKRDIPDSASNNRCDRCHAEGKTYSPVSY
                     PLNTAIEETQQKLKVMAVEPLKGVRSLISKDKAAEPLEKGVLRQKHNLYTFKDGTIRF
                     DATNEPLTHFKPKWIRTSIERLKDLGYKKDYLGRDIVTTDQLVELFMQDIIIPLESAK
                     YLIRVSKFIDEELVKLYGLEPFYNVSSVEDLVGHFAVGLAPHTSVGIIGRIIGFTDSQ
                     VCLASPIWHSAKRRDCDGDADSMMLLMDAFLNFSHSFLPNKIGGLMDAPLLIQPLVLP
                     HEVQRQAHNIDISSFYPLEFYQATWKQVKSGDLSEKIETIKNRIGKESQFFDYGFTHF
                     TDLLTTNVQRSAYSRLNTMDEKLEMQISTAKLINAVDPDEVVSMVLTTHILPDIMGNM
                     RAYSSQAFRCSKCGEKYRRIPLIGKCTECGNELLQTVTRGSVEKYIDIAAHMCEQFKI
                     SDY"
BASE COUNT          813 a          436 c          509 g          707 t
ORIGIN      
        1 ggacggtgct ataatacagg ctttgcaact attgggattc atcctactat accaatatta
       61 ttgaaccatg ctgtggttgt gggaacacaa attaagatgg atgtacctgg taaagcctca
      121 acaatagcac ttgtagatag tatagagccg cctcttgtta aactggacga cggagatgtt
      181 ctctacgtct caacagtaca acaggccata gaggttcgtt cgaaggtaga aaaaataatt
      241 tacttaggtg acattctgat aagttatgga gactttctcg aaaataatgc acaactactc
      301 cctgctagtt atgtcgagga aatttgggcg ctgcaattaa agtcaaagct aatatcattg
      361 gagacaaatc agtatccttc gtcctcttct gatacatctc ttattctatc tgaagtcgaa
      421 gaagaaaagg acggtagaat aaatcataag aggattgtga aactagttga ggaaccactt
      481 ataatatttc ctacagttaa ggaagcattt gaaattagca ggatgtatca tgtcccactt
      541 cacccaagat attcctttta ttgggaatca gttagcatcg acgaagtatt gttattgaaa
      601 gaccaattag ttaccagtaa gcaaaataat gacgaaattg tttctgttga tttaacttat
      661 aaacctgaac taaaagacat tttagaacgc cttggggtgg ttcactcagt agaaaatgga
      721 agtataagga tcagtaatac agatcagata tatgctctga gatctttatt gctagaatca
      781 aagccgtact caacagagtt aagtacatct aggtcaatat caccggagtc ttcggaaaca
      841 aatgatattt taggatttat atcaagaata tcaggagttg aagtgaagtc aaagtttgcc
      901 tcatcaattg cggtgagggt aggaagaccc gaaaaggctg ctgagcgcaa aatgaaaccg
      961 ccggttcatg tgctttttcc tgttggtact aagggtggta caacacgtga tattttaaag
     1021 gcagcgaagg gagaatcctt ttatgcagaa attgccaata gattttgcat cgattgtaat
     1081 ttaccttcgg ttgggactta ttgtcgcaag tgtggagctg ccacccctat tcgtaatctc
     1141 tgcatattct gcaaaagaga tatcccagat tccgcatcta ataatagatg tgacagatgt
     1201 catgcagagg gaaaaacata ttccccagtc agctatcctc taaatacagc catcgaagaa
     1261 acacagcaga aactcaaggt tatggcagtt gaaccactaa agggggttag atctcttatc
     1321 agcaaagata aagcggcaga gcctttagaa aaaggagtac ttcggcaaaa acataatctt
     1381 tatactttca aggatggaac aattaggttt gatgccacaa atgaaccgct aactcatttt
     1441 aagcccaaat ggattaggac aagtatagaa aggttaaagg atctgggtta taaaaaagac
     1501 taccttggca gagacatagt aacaacggat caattagttg agctcttcat gcaagacata
     1561 ataataccct tggagtccgc taaatatctt ataagggtat caaagtttat tgatgaagaa
     1621 ctagtcaaac tgtatgggct tgagccattt tataatgtgt cttctgtaga ggatttggta
     1681 ggacatttcg cagtaggact tgcaccgcac acttcggtag gtatcatagg tagaattatt
     1741 ggttttactg actcacaagt atgcttagct tctcccatat ggcattctgc aaaacgcaga
     1801 gattgcgacg gtgatgcaga ttctatgatg ttgttaatgg atgcctttct caatttttct
     1861 cactcttttt tgccaaacaa aataggtgga cttatggatg cacctttact cattcaaccg
     1921 ttagtattgc cgcatgaagt gcaacgacag gctcataata tcgatattag ttcattttat
     1981 ccacttgaat tttaccaagc aacctggaaa caagtcaaat ccggggactt atctgagaaa
     2041 atagagacta ttaagaatag aataggaaag gagagccaat tttttgatta tggttttaca
     2101 cattttactg acttattgac tacaaacgta cagcgtagtg cgtattctag attaaatacc
     2161 atggatgaaa agttagaaat gcaaatatct actgccaaac ttatcaacgc agtagatcca
     2221 gacgaagtgg tatcaatggt acttactacc cacatacttc ctgacattat gggcaatatg
     2281 agagcttatt catcacaagc cttcagatgt agcaaatgtg gagaaaagta tcgaaggatc
     2341 cctcttattg gcaagtgtac tgaatgcgga aatgaattat tgcaaacagt gaccagaggc
     2401 tcagtcgaaa aatacattga tattgcagca catatgtgtg aacaatttaa aattagtgat
     2461 tattt
//
LOCUS       DASPFX010000252         5111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2044700, whole genome shotgun sequence.
ACCESSION   DASPFX010000252 DASPFX010000000
VERSION     DASPFX010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5111
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2044700"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VD694_05435"
     CDS             <1..300
                     /locus_tag="VD694_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HXW12184.1"
                     /translation="KNLIDNGSISRFTIEENSDKKTSAITLLSVSSTTDTNSVASKLQ
                     TISGVKVIYEITGQYDIAVILSSDSINEINRSIDDIRRIEGVSDTDTVIILRTLT"
     gene            364..1557
                     /locus_tag="VD694_05440"
     CDS             364..1557
                     /locus_tag="VD694_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HXW12185.1"
                     /translation="MSLKSDDPNHFAHIYNKTIPNKEITILDSTLREGEQHPGVSFTN
                     KQRIQIAWLLDSFGVNQIEISPVVSHDHFEATKTIIKQGLKADILAHVRALKSDVEVA
                     LDCNATWVATYMGISDIHLSTKLKISREEAKIRALEVADFIKSHGLKSRFTMEDASRT
                     DPSFLIEMCKEMNSRGIERISIPDTVGIMRPQGMYNLVKMVYDNIDTKNSSLDVHCHN
                     DVGLALANALAGCEAGANQIHTTIDGFGERTGIPSLAETAVALSFIYGIPNDFRLHML
                     KDLSRTIVDYTHIETPESKPIVGESAYKHKAGTHLAAILQNPSAYEIIEPRLVGNRRK
                     IVFGELAGKNGAAYLLSLLGLESSKVEAEKMAKGLKELRMGDILELYLDERLERKILN
                     DALSK"
     gene            1569..1736
                     /gene="lysW/argW"
                     /locus_tag="VD694_05445"
     CDS             1569..1736
                     /gene="lysW/argW"
                     /locus_tag="VD694_05445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HXW12186.1"
                     /translation="MIKCTECDAEIKIPDDAMENEIVTCPDCGATYELIKSSDGFAIR
                     PAQSVGEDWGE"
     gene            1733..2599
                     /gene="lysX"
                     /locus_tag="VD694_05450"
     CDS             1733..2599
                     /gene="lysX"
                     /locus_tag="VD694_05450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HXW12187.1"
                     /translation="MKGNTNKPSFFILYDQLRWEEKSLIEAAQKKDIKLQVINCRENS
                     IELDEDRSNYRDDIILQRCVSYYNNLHSTAAFEGLGAKVINSLHTAIMCGNKLFTHME
                     LSKSDIAIPKAFCAFSNQSAMSILNKNGYPKVIKPVVGSWGRMIALLKDKEAAEAVIE
                     DREHMYPLYHVFYFEEFVKRPPRDIRSIVVGNRVVAAIYRYSGDNEWKTNMALGGKAE
                     ACKVTNEMEELCLKAAKTMKGEILGVDLMESENGLLVHEVNNTTEFKNTVRVTGVDIP
                     SLIIEHLTNSNK"
     gene            2609..3736
                     /locus_tag="VD694_05455"
     CDS             2609..3736
                     /locus_tag="VD694_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HXW12188.1"
                     /translation="MISSAYAIELLKKALEIYTPSRSEAQLANLIKEKCLDDLGFEKV
                     SIDSVGNVIATKGSGSPKILLCGHMDTVPGQIPVRIESGYLFGRGASDAKAPLIAMLL
                     ACSEFKQRGTIIFAGVVDEEGNATGIKELVKNKLSVDYAIFGEPSGIDKITISYKGRL
                     ALRLTCDVLDSAHASAPWLSKNSIEEVYEVWKLLSNEIASKYNRTDKKSESVSLSLTE
                     ISGGSSHNVTPQKCKITIDIRVPNGVKCQNVLDALDNAIRNISELRKVKITYRVEDMT
                     EPFEADHSSPIVRALSLSILDTSKARAILLRKTGTGDMNVLGNSLNIPVVTYGPGEPH
                     VSHSKDERVEIQSFLTSIEIYNRALFHTSRLHHNKRDSGTR"
     gene            3746..4795
                     /gene="dph5"
                     /locus_tag="VD694_05460"
     CDS             3746..4795
                     /gene="dph5"
                     /locus_tag="VD694_05460"
                     /EC_number="2.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004164 - diphthine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine synthase"
                     /protein_id="HXW12189.1"
                     /translation="MLYLIGAGIYDTFEMCNSINILKDCDRIYIERFTSPISDNFIQI
                     LKSNLEPRKKIEFVKRWFVEDGRQILDESKTLNVGLVSYGDPTIATTFTELRIRAIKN
                     NIIVKVIHAASGITSLVGESGLQIYKIGKLVTMMEERQSAISVYTTIFNNLNLNCHTI
                     ILTEYRQDENESVFFLKPNDVFSRLLEVEKDIKYEFVSEDSFLIVLSRIGTDKQRIVS
                     GKIKSLFGIDYGKGPHAIIFPSKLHFTEEDALLNLTEVVDTPSDNTAVIKSISDHMVS
                     RYEPMIRNEIKQIRESLISRKKENIQLEMLENAELYLDDAIQFFRQGKKELAVLSIGY
                     ADGLVDSIKQMLEID"
BASE COUNT         1813 a          825 c         1057 g         1416 t
ORIGIN      
        1 aagaatctaa ttgataatgg ttcgatatcc agattcacaa ttgaagaaaa ttctgataag
       61 aaaactagcg ctataacact actttctgtt agctcaacta ctgacacgaa ctcagttgca
      121 tcaaaactcc aaactatttc aggagtcaag gtcatttatg aaattaccgg acaatatgac
      181 attgcagtga tattatcttc cgattctatc aacgaaatta acaggagtat tgacgatata
      241 agaagaatag aaggcgtatc ggatacggat acggtcatta tcttgaggac tctcacgtag
      301 gatacacttt ttcaagccga aaagatttat attgtattcg aaataagtta ttaataagca
      361 taaatgtcac taaaatcaga tgatcctaat cattttgcgc acatatataa taaaacaata
      421 cccaataaag aaataacaat tttagattca acgctacgtg aaggtgagca gcatccggga
      481 gtatcattta caaataaaca aagaatacag attgcctggt tattggactc gtttggcgta
      541 aatcaaatag aaataagccc ggttgtctct catgatcatt tcgaagcaac aaagacaata
      601 atcaaacagg gtcttaaagc cgacatactg gctcatgtaa gggcacttaa atctgatgtt
      661 gaagtggcac ttgactgcaa tgcaacatgg gttgcaacat acatgggaat ttcagacata
      721 catctatcta caaaactaaa aatatcaaga gaagaggcaa aaatcagagc gcttgaagtt
      781 gcagatttta ttaaatcaca tggattgaaa tcgcgcttta caatggaaga tgcaagcaga
      841 acggatccat cgttcctaat tgaaatgtgc aaggaaatga attcacgtgg aattgaaaga
      901 atcagcatac ctgatactgt gggaataatg cgtccgcagg gaatgtacaa cttggttaag
      961 atggtatatg acaatataga cacgaaaaac tcatcgctag atgtacactg tcataatgat
     1021 gttgggcttg ctttagcaaa tgcactagca ggatgtgaag ctggagcaaa tcagatccat
     1081 actaccattg atggatttgg tgaaagaact ggtattccat ctttagcaga aacagcagtt
     1141 gccttaagct tcatctacgg cattcctaat gattttagat tgcatatgct aaaggacctt
     1201 tcaagaacta ttgttgatta tacgcatatt gaaactcctg aatctaaacc aatagttgga
     1261 gaaagtgcgt ataagcataa agcaggaaca catttggctg ctattctcca aaatccatct
     1321 gcttatgaaa ttattgaacc ccgtcttgtt gggaatagaa gaaaaatagt gttcggagag
     1381 ctggccggta aaaatggagc tgcttatctt ctctcattgc ttggacttga atcttcaaaa
     1441 gttgaagcag agaaaatggc caaaggtttg aaggaactgc gtatgggaga tattttggaa
     1501 ttgtatcttg atgaaagatt agaaagaaaa atacttaacg atgcattatc aaagtagagg
     1561 agatagtaat gataaaatgc actgaatgcg acgcagaaat caaaattccc gatgatgcga
     1621 tggaaaatga aattgtgaca tgtcctgact gtggtgccac ttacgaacta ataaaatcaa
     1681 gtgatggatt tgccataaga cctgcacagt ctgtcggaga ggattgggga gagtgaaagg
     1741 gaataccaat aaaccttcct ttttcattct ttatgatcaa ctaagatggg aagaaaaatc
     1801 gttaattgaa gctgcgcaaa aaaaggacat aaaattacaa gtcattaatt gtagagagaa
     1861 ttcaatagaa ctggacgaag acagatcaaa ttaccgtgat gatatcatat tacaaaggtg
     1921 tgtgagctat tacaataatt tgcattcaac cgctgcattt gagggccttg gcgcaaaggt
     1981 gataaattcc ctgcatacgg ctattatgtg tgggaataaa ctgtttactc atatggaatt
     2041 atcaaaatca gatattgcca ttccaaaagc attttgtgcc ttctctaacc aatcagcgat
     2101 gagtatcctg aataagaacg gatatccaaa agttatcaaa cccgtggtag gtagctgggg
     2161 aagaatgata gcattactaa aggacaagga ggctgctgaa gcagtgatag aagataggga
     2221 acatatgtat ccattatatc atgtatttta tttcgaggaa tttgtgaaaa gaccgcccag
     2281 ggatatcaga agtattgtcg tagggaacag agtagttgct gccatctata ggtactcggg
     2341 agataatgaa tggaaaacca atatggccct tggtggtaag gcagaggctt gcaaagttac
     2401 aaacgaaatg gaagaacttt gtctaaaagc cgcaaagaca atgaagggtg agattttggg
     2461 agtagattta atggaaagtg aaaatggact tttggtgcat gaggtcaaca atactacaga
     2521 gttcaagaac acagttaggg ttactggagt agatatccca tcccttatta tagagcatct
     2581 tacaaattct aataaataat tagcaaaatt gatctcttca gcatatgcta ttgaattatt
     2641 gaaaaaggct ctcgaaatat acactccttc tagatcagag gcacaattag ctaatttgat
     2701 taaggaaaaa tgtctagatg atctgggatt tgaaaaagta agtatcgata gtgttggtaa
     2761 tgtaatcgca accaagggaa gtggtagtcc gaaaatccta ttgtgtggcc acatggatac
     2821 cgtgcctggt caaatcccgg taagaattga atcaggatat ctgtttggca gaggagcgtc
     2881 tgatgctaaa gcgccactta tagcaatgct gcttgcgtgt tcagaattta aacagagggg
     2941 aactataata tttgcaggtg tcgttgatga agaagggaac gctactggta taaaggagct
     3001 agtcaagaat aaattgtctg tagattatgc aatatttgga gagccaagtg gaatcgataa
     3061 aattaccatt tcatataagg ggagacttgc gttgagactt acatgtgatg tacttgatag
     3121 cgcccatgca agtgcaccct ggttgtcaaa aaattctatt gaggaggtat atgaggtgtg
     3181 gaaattgctt agtaacgaaa tagcatcaaa atataacaga acagataaaa aaagtgaatc
     3241 agtcagcctc agtctcacag aaatttcagg aggttcgagt cataatgtta ccccacaaaa
     3301 atgcaagata accattgaca taagagtacc aaatggagtc aaatgccaga atgtattaga
     3361 tgccttggat aacgctataa gaaatatatc agaattaaga aaagtgaaaa taacttaccg
     3421 agttgaggat atgacagagc cttttgaagc agaccactca tccccaattg ttagggctct
     3481 atctctctca atattagata ctagtaaggc gcgtgcaata cttttaagaa aaactggtac
     3541 tggagatatg aacgtattag gaaattcctt aaatatcccc gtggtaacgt acgggccagg
     3601 tgaacctcac gtgtcccact ctaaggacga aagagtggag atacagtctt ttctaacaag
     3661 catagaaatt tacaataggg ccctttttca tacctcaagg ctacaccata ataagaggga
     3721 ctcaggtacc agatgaacca ctgaaatgtt atacttgatt ggtgctggaa tttatgatac
     3781 ttttgaaatg tgtaattcaa ttaatattct gaaagattgc gatagaattt acattgaaag
     3841 gttcacttca cccatttcgg ataattttat ccaaattctt aaatcgaatc tggagccaag
     3901 aaagaaaata gaatttgtaa aaagatggtt cgtagaagat ggcagacaaa tattagatga
     3961 atcaaagaca ttgaatgtgg gattagtaag ttacggagat ccgactatag ctacaacttt
     4021 tacagaatta agaatcaggg caataaagaa taacattatc gtcaaagtaa tacacgccgc
     4081 ttcaggaatt acttctcttg tcggggaatc gggattacaa atctacaaaa taggaaaact
     4141 tgttaccatg atggaagaaa gacagtctgc aataagcgtc tatacgacga tctttaacaa
     4201 tctgaatttg aattgtcata ccatcatatt aactgaatat agacaggatg agaatgaatc
     4261 agtttttttt ctaaaaccaa atgatgtatt ctcaagatta cttgaggtgg aaaaagacat
     4321 aaaatacgaa tttgtttcgg aagattcttt tctaattgtt ctttcaagaa ttgggacaga
     4381 caagcaaaga attgtcagtg gaaaaatcaa atccttattt gggatagatt acggcaaagg
     4441 gccccatgct atcatattcc cttccaaact acattttaca gaagaggacg cattattgaa
     4501 tttgaccgaa gtagtcgata cacctagtga taatacagct gtcataaaga gcatttcgga
     4561 tcacatggta agcagatacg aaccaatgat cagaaatgaa atcaagcaaa taagagaatc
     4621 actaatttca agaaagaaag agaatataca gctagaaatg ctggagaatg cagaattata
     4681 tctggatgat gccattcaat tcttcaggca aggaaaaaag gagctagcag tattatcaat
     4741 tggatatgca gatggattag tggactcaat aaaacaaatg ctagaaatag actaatccgc
     4801 aacttaggat acaatcctca attctaggca tatactcaaa ataactgtgt ccaacatagt
     4861 aaatatttac taaaaatagt aatattccag taaaattcca atttcatgag tattgcctcg
     4921 ttgttcgaat ttgagatttc ttccctgcta tttatcctca tatattattg cctttcataa
     4981 tttttttata agggttaggt aaacaataag catgtataac ttgagatatt caataggtgt
     5041 cggtttggcc atttggactt ttgtgttgat gagtaatttt gcttttgcac aggtcagttt
     5101 taggacggat t
//
LOCUS       DASPFX010000253         3592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1687864, whole genome shotgun sequence.
ACCESSION   DASPFX010000253 DASPFX010000000
VERSION     DASPFX010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1687864"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..311
                     /locus_tag="VD694_05465"
     CDS             48..311
                     /locus_tag="VD694_05465"
                     /inference="COORDINATES: protein motif:HMM:NF014229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UBP-type zinc finger domain-containing protein"
                     /protein_id="HXW12190.1"
                     /translation="MDEENKCEHFAGANENLKPKTPGCEECQVEGTDWVALRMCLICG
                     HVGCCDSSVGLHATKHYKETNHPVMVALPNKQWRWCYVHKDYA"
     gene            786..956
                     /locus_tag="VD694_05470"
     CDS             786..956
                     /locus_tag="VD694_05470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12191.1"
                     /translation="MKLFEKTADKGQKFFFGKYEIGKEIGLFNPSEVDRIVEILQGDG
                     YVLSSEVKSAEF"
     gene            complement(1007..1600)
                     /locus_tag="VD694_05475"
     CDS             complement(1007..1600)
                     /locus_tag="VD694_05475"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HXW12192.1"
                     /translation="MRVSKTDESRKSTYPINPLILNRWSPRAMTGGDLDNEEIMPLFE
                     AARWAPSSYNNQPWRFIYAKRNTEHWDRLFNLLADGNKTWAKNSALLVVVISRKNFEY
                     NEKPARTYQYDAGSAWENLALEAFSRGLVAHGMQGFDYEKARFELEIPSDFEVMAMIA
                     IGKKGPRESLPTDLQEKERLTDRKPLKDIVMEGIYRK"
     gene            1764..1895
                     /locus_tag="VD694_05480"
     CDS             1764..1895
                     /locus_tag="VD694_05480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12193.1"
                     /translation="MNDSILKLQDLLDRGCKIVKIYPMIFGSGAEINIVTVEVSCPD"
     gene            2103..3095
                     /locus_tag="VD694_05485"
     CDS             2103..3095
                     /locus_tag="VD694_05485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12194.1"
                     /translation="MPRLGSVSRLDFLRMMGIAGTAFMLLPLASFGRTLGSNVPIASK
                     PVIIKRVNKVGPDGVAFLYPTKQNGFVWYMDHNEPFDLHFERGGGSTYSNLVKNEDGS
                     WTADDNERVKFNLNVDPDYEDAIGGCNMSFKDSMARGYTYEKSDLDHVELTGFFNVHK
                     PTENDGIYLRGPCNHHDEADHLCCEEFNYDCETDCNSTLLRSKVKFTKQSPNKYHNDP
                     AGVKPIVPRVVLAGHGWFGIKYIHIILSRDMNNPRVKLEQWINFNGDGKTWIKVNEVV
                     DTRSYKWGPKAICEGEDYEVGAWAAPRMVYKWYRGDVDFKWFSCRQIEPSLIRT"
     gene            3246..>3592
                     /locus_tag="VD694_05490"
     CDS             3246..>3592
                     /locus_tag="VD694_05490"
                     /inference="COORDINATES: protein motif:HMM:NF015674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF308 domain-containing protein"
                     /protein_id="HXW12195.1"
                     /translation="MNSSMEESPGWLRGVQIGLGIITVILAIYALAFPAVTFLAVIVI
                     LAIILLIVGIEKIITGIFLPVKGRWATIGFGILVLIFAGLAISFPVATALVVAIFVGI
                     GLIFNGCARIVEG"
BASE COUNT         1176 a          584 c          710 g         1122 t
ORIGIN      
        1 aaacaaataa ctgagccctt ttataacatt cccgttcatt cattagcatg gatgaagaaa
       61 ataaatgtga acattttgct ggggcaaatg aaaacctgaa accaaaaacg ccaggatgtg
      121 aagaatgtca agttgaaggt actgattggg tcgcactgcg aatgtgctta atttgtggtc
      181 atgtaggatg ttgcgattct tcagttggac tgcatgcgac aaagcactat aaggaaacta
      241 atcaccctgt aatggtggct ttgcctaaca aacaatggag atggtgctat gttcacaaag
      301 attatgcttg attttctatt tgtcctacca actactatat ctttttgtag cttctgaaaa
      361 ataattaccc tatcaaactc gataagaaaa tttataacgg ttactaaata gtgattacaa
      421 tatcaagaat aaataagctt gatcgaaaag caggatcatc gtcctgtaaa caaaattaga
      481 gaatatacgc aattgatatg taactaattt aagtcatgag gattatatta taatatggaa
      541 actgagactt gatgtgatta ttgtagaaat aagtcctatt ctctgaaaca gttcctaagc
      601 aagatggttt gtgataaaag ctattatcaa ttaattaata caattcaaac gccaacaatt
      661 cgtctttgag gagaatctat agaaccctgt ctaaaaaaat ccatatatgt gaaaagagtc
      721 tgatgattca gtttttaccg ggtttttgaa taatcatgtc taatgagtca tttgacaagt
      781 ttctcttgaa gcttttcgaa aaaactgcag ataaaggtca aaaattcttt ttcggtaaat
      841 atgaaattgg aaaagaaata ggactattca atccgtccga agttgataga attgttgaaa
      901 ttctacaagg agatggatat gtattatcta gtgaagtgaa aagcgcagaa ttttgaatta
      961 ctgacaaggg aaaggaaaga ctggaacaca atcaaatttg atgtcatcac ttacggtaga
     1021 ttccctccat aacaatgtct ttcaagggtt ttctatcagt tagtctttcc ttttcttgaa
     1081 gatctgtcgg aaggctttcc cgcggtcctt ttttccctat agcaatcatg gccattactt
     1141 caaaatcaga aggtatttcc aattcaaatc tagccttttc ataatcaaaa ccctgcatac
     1201 catgagcaac aagccctcta gaaaatgctt ccaatgccaa attttcccaa gcagaccctg
     1261 cgtcatattg atatgttctt gccggttttt cattatattc aaagtttttt ctagatatca
     1321 ctacaactag taacgcagag tttttggccc aagtcttgtt gccatcagcc aataaattaa
     1381 acaatctgtc ccaatgttct gtatttctct ttgcatagat aaatcgccat ggttgattat
     1441 tatatgatga aggggcccat cttgcagcct caaaaagtgg catgatctct tcattatcaa
     1501 ggtctccgcc agtcattgcc ctaggtgacc atctattgag aataagagga ttaataggat
     1561 atgttgattt tctcgattca tcagtttttg atactctcat ttgaactctg taatagactg
     1621 cactttatca tatataatag agattcatat tgattgaagt caattcgtga acagcacaag
     1681 aagtaatttg acatattttt caattatctc taagaatcaa tatgcaattt ttttaataag
     1741 catgattgta gaatctacag atattgaatg actctatatt gaagttacaa gatcttctag
     1801 ataggggctg taagatagta aagatttatc ccatgatatt tggatctggc gcagaaatta
     1861 acatagtaac ggttgaagta agttgtcctg actagaatat tcacaagata acggttgaag
     1921 taagttgtcc tgactagaat attcacaaga taagagcttt tagagaggaa gctattgaat
     1981 taagagaact tatacgaatt aaaaatttag ataccaaaca aaatacatct agataagtat
     2041 cttgaattaa gagatatcca gcattacgtt ttatataatc taaagatcaa ttattaaatg
     2101 aaatgccaag attgggttct gtctcacgcc ttgatttttt aagaatgatg ggaatcgccg
     2161 gaacggcatt tatgttactt cccctagcat cgtttggaag aacacttggt agtaatgttc
     2221 ctatagctag taagccagta ataattaaaa gggttaataa agtcgggcct gatggagtgg
     2281 cttttttgta ccctactaaa caaaatggat ttgtctggta catggaccac aatgaaccat
     2341 tcgatttgca ttttgaaaga ggtggtggtt ctacatatag caatttggta aagaatgaag
     2401 acggctcttg gactgctgac gacaatgaga gagtcaagtt caacttgaat gtagaccctg
     2461 attatgagga tgcaatagga ggttgcaata tgagttttaa agactctatg gcacgaggtt
     2521 acacttatga gaagagcgat cttgatcacg ttgagttaac cggatttttt aatgtgcata
     2581 aaccgacaga aaatgatggt atctatctta gaggaccatg caatcatcat gatgaagcag
     2641 atcacctttg ttgtgaagaa ttcaattacg attgtgaaac agattgtaat tctactctgt
     2701 taagatccaa agtaaaattc accaaacaga gtccgaacaa gtaccataat gatcctgccg
     2761 gagttaaacc tatagtaccg cgcgttgtct tagcaggtca tggttggttt ggcatcaagt
     2821 acattcacat aattttatct cgcgatatga acaatccgag agtgaaatta gaacaatgga
     2881 taaattttaa tggagatggt aagacttgga taaaagtgaa tgaagtagtt gacactaggt
     2941 cctataagtg gggaccaaaa gccatatgcg aaggcgaaga ctacgaagtt ggagcctggg
     3001 cagcgccacg tatggtttac aaatggtacc ggggagacgt tgattttaaa tggttttcat
     3061 gcaggcaaat cgaacctagt ttgattcgaa cctgacagtg tggagaaatg ccaagacgat
     3121 acatgcaaaa tgatgtcaaa tatctgtctt taagaagctg ataaatttta taaaaagttg
     3181 ataaaatttt ataatagtgc atagttttac aagactttaa atagtttgag ccattattta
     3241 taacaatgaa ttcatcaatg gaggaatctc caggatggct tcgaggcgta cagattggtc
     3301 ttggaattat tacagtcata cttgccattt atgcacttgc attcccagca gtcacttttc
     3361 tcgctgtaat agtgatactt gcgataattt tgcttattgt aggtattgag aaaatcataa
     3421 ctggtatttt tctacccgta aaggggagat gggccacgat agggtttggt attctggtac
     3481 taatatttgc gggtcttgct atttcattcc cagtagcaac tgcattggta gtagcgatct
     3541 tcgttggtat tggactaatt ttcaatggat gtgcgcgaat cgtggaaggt at
//
LOCUS       DASPFX010000254         3646 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1897616, whole genome shotgun sequence.
ACCESSION   DASPFX010000254 DASPFX010000000
VERSION     DASPFX010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3646
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1897616"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VD694_05495"
     CDS             <1..305
                     /locus_tag="VD694_05495"
                     /inference="COORDINATES: protein motif:HMM:NF012680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="KOW motif-containing protein"
                     /protein_id="HXW12196.1"
                     /translation="IIEAPDSNIAYDALIGVRHVKGQIRGELPYKDIESYLVKRPVVS
                     ELSIDDTVEVVAGPFKSMKAKITRVDYEKQEATVLLLDSPYQIPVTVDANYLKKST"
     gene            359..841
                     /locus_tag="VD694_05500"
     CDS             359..841
                     /locus_tag="VD694_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HXW12197.1"
                     /translation="MEPKKSISALVSGGEASAGPPLGPALGPMGINVLQVVNTINEKT
                     KEFQGMKVPVKVEIDPDTKKFNVEVGVPPTTALIAKEANVSKGSGTAGKDYVGNISME
                     GIVKIAKMKIEVSYATTIKSSVKEIIGSCVSSGIKVENKPAKEIYPDLMEGKFDQLFT
                     "
     gene            936..2576
                     /gene="thsB"
                     /locus_tag="VD694_05505"
     CDS             936..2576
                     /gene="thsB"
                     /locus_tag="VD694_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HXW12198.1"
                     /translation="MSIQQGSAGGMPVLILKEGASQTKGRDAQKNNIAAAKLIAEVVR
                     SSLGPRGMDKMLVDGLGDVTITNDGATILKEIDVQHPAAKMMVEISKATDNEVGDGTS
                     SVVVLAGALIEKAEELINKDVHPTIIVDGYRKSALKSIEIFNQIAQKIDGGNKAELMK
                     IAKTSMQTKLVSKESSELSEVVVNAAMQVSEKRESGYVVDIDDVKVEKKAGGSLRDTK
                     LIKGIVLDKEVVHGGMPKRIDKAKIALINSALEIEKTEFDAKINISSPDQMKMFLEEE
                     NKMLKNMVDKIISSGANVAICQKGIDDVAQHYLAKANILAVRRVKESDMTKLGRATGA
                     RIVNNLEDLGSKDLGSADLVEERKVETDKWVFIEGCKHPKSVTILIRGGSQRVVDEAD
                     RSLHDALMVTKDVMEKPFIVAGGGSPESFVAGKLREWSSTLSGREQLAADKFAESLEV
                     IPLALAENAGMDPIDTLTELRSKQAKGSKWSGIDARTGKIVDMSKQDIVEPLSVKEQI
                     IKSATEVASMILRIDDVIASSKSGGGAPGGMPPGMGEM"
     gene            complement(2596..2835)
                     /locus_tag="VD694_05510"
     CDS             complement(2596..2835)
                     /locus_tag="VD694_05510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12199.1"
                     /translation="MVAKIERRCMLCVRNAIQEKFCEFHYEALQSLRTHYQVWRSSYG
                     EITWYDYLVRLQEIKYTGKWVKDVIELELKNVRKK"
     gene            complement(2835..3308)
                     /locus_tag="VD694_05515"
     CDS             complement(2835..3308)
                     /locus_tag="VD694_05515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12200.1"
                     /translation="MSSVTKLEHYGVSPYELEALYSSLARFSGVDEKELHDAEYLSML
                     NIEFPVPYDDNFFQSFGFDNWQRIKHIFKEMKRRRGKKDFKLSLSFSGSTESDSKLIF
                     SLTGDIGAQFEYAIEKIAHMVDSINMKIKNLETNRHVMSYTYDTATMKWVLSEKF"
     gene            3430..>3646
                     /locus_tag="VD694_05520"
     CDS             3430..>3646
                     /locus_tag="VD694_05520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12201.1"
                     /translation="MDTIKILERDNNHIVIEFSDIPRQYVNALRRLSISQVPTFAIDD
                     VVVLENSSVMHDEAIAHRLGLIPLRTDL"
BASE COUNT         1235 a          636 c          751 g         1024 t
ORIGIN      
        1 taataatcga ggcgcctgac tctaacattg catacgatgc tcttattggg gtcagacatg
       61 tcaagggaca gatccgcgga gaattgccct ataaagacat tgaaagttat ttggtaaaaa
      121 gacctgtggt atcagaatta agtatagatg acacagtcga ggttgtcgct ggacccttca
      181 aatccatgaa ggctaagata accagggttg attatgaaaa acaagaggca acagtcttat
      241 tgttagattc tccttatcag atacccgtta cagttgacgc aaattatttg aaaaagtcca
      301 cataggaatg gtacaataac tattaaatta aagaacataa ttcttaaaat ggtctgctat
      361 ggaaccaaaa aaatctattt ctgctcttgt aagtggcggc gaagctagtg ctggacctcc
      421 acttggccct gcattaggac ctatgggaat caacgtatta caggtagtta acacgattaa
      481 tgagaaaact aaagagtttc aaggaatgaa ggttcctgta aaggtagaga tcgatccaga
      541 tacaaaaaaa ttcaatgttg aagttggcgt acctccaact accgctttaa tagctaagga
      601 agcaaatgta tccaaaggat ctggtacagc aggaaaagac tacgttggaa atatttccat
      661 ggaaggaata gtaaaaatag ccaaaatgaa aattgaagtt tcgtacgcga caaccataaa
      721 atcaagtgta aaagagatta ttggttcttg cgtaagtagc ggaattaagg tcgagaacaa
      781 acctgccaag gagatctatc cagatttgat ggaaggaaaa ttcgatcaat tgtttacata
      841 gattttttat ttcatccttg ctttttattt gtcgcaaatt taaaatatcc cagaactgga
      901 ttttacatta agttttagga gatatgatgt aataaatgtc aattcaacaa ggttcagcag
      961 gtggtatgcc tgttttgata ttgaaagaag gcgcaagtca gactaaagga cgcgacgcac
     1021 aaaaaaataa tatagcagct gcaaaattga ttgcagaagt tgtaaggagc tcccttggtc
     1081 cacgaggaat ggataagatg ttagtagatg gactaggaga cgtaacaatt accaacgatg
     1141 gtgcgactat attgaaggaa atagacgtcc agcatcctgc ggcaaagatg atggtggaaa
     1201 taagcaaagc tactgataat gaggtaggtg acggaacttc ctctgtagta gtcttggcag
     1261 gcgcgttgat agagaaagct gaagaattaa tcaataaaga tgttcacccg actattattg
     1321 tagatggata tagaaagagc gcattaaaga gtattgaaat ctttaatcaa atagcacaaa
     1381 aaatagacgg tggaaacaag gctgaattga tgaagatagc aaaaacctca atgcagacca
     1441 aacttgtatc caaggagtct agtgagttat ctgaagtggt tgttaatgct gctatgcaag
     1501 tttctgaaaa aagagaatct ggctatgtcg tagatattga cgatgtcaaa gttgaaaaga
     1561 aagccggcgg ctcattacga gataccaaac taatcaaagg aatcgtactt gacaaggaag
     1621 tcgttcatgg cggaatgcca aaaaggattg ataaggcaaa aattgcttta atcaactctg
     1681 ctctagaaat agagaaaact gagtttgatg ccaaaatcaa cattagctca ccagaccaaa
     1741 tgaagatgtt cctcgaagaa gagaataaaa tgctgaagaa tatggtagac aagattattt
     1801 catcaggagc caatgtagct atttgtcaaa aaggcattga tgacgttgcg cagcattatt
     1861 tggccaaagc caatatcttg gctgtcagaa gggtcaaaga aagtgatatg accaaactgg
     1921 gcagagcaac aggtgcccga atagttaata accttgaaga cttgggttct aaggatctag
     1981 gttctgcaga tctcgtagaa gagagaaagg ttgaaacaga caaatgggtt ttcattgagg
     2041 gatgcaagca tccaaagtct gttaccatac ttattagagg agggtcacag agggtagttg
     2101 atgaggccga tcgatcatta catgatgcct taatggtaac caaagatgtc atggaaaaac
     2161 cattcatagt tgcaggcggc ggatcaccag aatcttttgt tgcaggtaaa ctaagagagt
     2221 ggtcttcaac attatcagga agagaacaat tggcagcaga caagtttgca gaatcacttg
     2281 aagttattcc acttgcttta gcagaaaatg ccggaatgga tcccatagat actcttacag
     2341 aacttcgctc taaacaagca aaaggatcaa aatggagtgg tattgatgca agaaccggaa
     2401 agattgtaga catgtccaag caagatatcg tagaaccact cagtgttaag gagcaaatca
     2461 taaagtcggc tacagaagtc gcatctatga ttctcagaat agatgatgtc atagcttcaa
     2521 gcaaatctgg cggtggtgct cctggcggca tgcctcctgg catgggagaa atgtaaacta
     2581 aaaataaaca ttatctcatt tttttcttac attttttagt tctaattcaa taacatcttt
     2641 gacccacttg ccagtatact ttatttcttg caatctaaca agataatcgt accaggttat
     2701 ctcaccataa ctgcttctcc aaacttgata gtgagtcctt aaggattgta atgcttcata
     2761 atgaaattca caaaattttt cctggattgc atttcttaca cataacatgc atcttctttc
     2821 aatctttgca accattagaa tttctcagat aacacccact tcattgttgc tgtatcatac
     2881 gtatatgaca tgacgtgtct gtttgtctca aggtttttga ttttcatgtt aatagaatct
     2941 accatatgcg ctattttttc aattgcatat tcaaattgag caccaatatc tccagttagt
     3001 gaaaatatca acttcgaatc actttcagtt gatccagaaa atgacaagct tagcttgaaa
     3061 tccttcttgc ccctcctacg cttcatttcc ttaaaaatat gctttatcct ctgccaatta
     3121 tcaaaaccaa atgattggaa gaaattatcg tcataaggaa ctggaaactc gatatttagc
     3181 atacttagat attcagcatc atgcaactct ttttcatcga ccccagaaaa tcttgccaga
     3241 ctactataca gggcctctag ttcataggga gacactccat agtgttccaa ctttgtcacg
     3301 ctactcaatt gagaaattat gatagctata gggcattaat cttttgattt taagaaatta
     3361 aagcaattgc atggacatgt gattttcggt agatttttaa gtgttcatta ataaaatttc
     3421 gtggacgctt tggacacgat taagattctt gaaagagata ataatcatat agttattgag
     3481 tttagtgata ttccaagaca atatgtcaac gcattaagaa gattatctat cagccaagtt
     3541 cctacttttg ctattgacga tgtggtagta cttgaaaact catctgtaat gcacgatgag
     3601 gcaatcgctc atagactggg gcttattccc ttacgcacag atcttg
//
LOCUS       DASPFX010000255         4000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1989381, whole genome shotgun sequence.
ACCESSION   DASPFX010000255 DASPFX010000000
VERSION     DASPFX010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4000
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1989381"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            51..1037
                     /locus_tag="VD694_05525"
     CDS             51..1037
                     /locus_tag="VD694_05525"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HXW12202.1"
                     /translation="MKTRKDELLDKVKEDTEEFKKRANVSRKEMNQRKNASPPLPPAI
                     NKDFTFGARDEILSKVEGDYEEFKKTRTFKFPTWLYGPPKGKLFKLEVEDCPRFGDKA
                     YVEFDSARTAFLSIDMQIDFCGPKGYVDVMGYDLGLTSAPIKPIMHVLDTIRNGTDIK
                     VIHTREGHLPDLSDAPYNKVLRSKIIGDGIGIGDIPQGGLGRLLIRGEKNWDIIDDLY
                     PIPGEYVVDKAGKGGFGQSNLPLLLKNLGITHLLITGITTDVCVHTIMREANDNGYWC
                     TLLKDGTGATDYGNYQAAIKQVKMQGGVFGWVSDSSKFVQAVKSTFDNKRWQ"
     gene            complement(1475..2725)
                     /locus_tag="VD694_05530"
     CDS             complement(1475..2725)
                     /locus_tag="VD694_05530"
                     /inference="COORDINATES: protein motif:HMM:NF018275.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HXW12203.1"
                     /translation="MDNLIKNRIEKANKIATDRILRSRPFLIDIKPAIEVMPKMKKNS
                     IFHSGPPIAWKRMCGPMKGAIVGTMIYEGYAQGWTEAVKMIEDGEIEFSPNHDHDAVG
                     PMAGVISPSMPVLIVKNETYGNICYGRFVEDKVQFGLFDRDAVESLKFWSETLAPGLA
                     KAVRKNKGVDLKSIMAKALHMGDELHNRPAAGTLLFASVMIPYLIESVNTDDLVKITK
                     YFSENEIFFLCMSMAACKTVMNAAREIEYSTLVTAMARNGTDFGIKVSALGNKWFIGP
                     ASKIEGVYFPGYGPDDANLDMGDSAITETAGIGGFALADSPAILSLIGGSAEDAITYT
                     KQMRDITMTLNDTFSLPILDFQGTATGIDFRKVLRTGVLPVIDTAIAHKEPGIGMIGA
                     GLVRPPIDAFKNALHAYGAKYHLT"
     gene            complement(2774..3721)
                     /gene="arcC"
                     /locus_tag="VD694_05535"
     CDS             complement(2774..3721)
                     /gene="arcC"
                     /locus_tag="VD694_05535"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF009007.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008804 - carbamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HXW12204.1"
                     /translation="MFFISQESLVIALGGNALLRSGQSGSFEEQDANFQPAARKIVDL
                     VQDYRVVVTHGNGPQVGYILLKNEIAKKYAPPFPIDACGAQTQGWIGYMIQQSLKNIL
                     EERKMDKDVITLITRVKVDKNDPAFQNPTKPIGPFFNEGQAESIMRERPDWTLKEYAG
                     RGFRRVVASPKPLQIVESHAIRTMVDAGFLVVACGGGGIPVIEKNGTLTGADAVVDKD
                     LASERVATLIGATKLILLTDVDGLYENYGKSNQQLVSKIRLNEINRLNITDLEEGDMG
                     PKVRASVAFIRNGGKEAIIGNLKRLSESLDGNAGTHFVP"
BASE COUNT         1230 a          822 c          729 g         1219 t
ORIGIN      
        1 aggaaaaata ttatatattt ttatgtggat gcaaaaagag atcaagttaa atgaagacac
       61 gaaaagatga gctattagat aaagttaagg aagacactga agagttcaaa aaacgtgcaa
      121 atgtgagccg taaagagatg aatcaaagaa aaaatgcttc accaccgctg ccaccggcaa
      181 taaataagga cttcactttt ggagctcgag atgaaatact gtctaaagtt gaaggagatt
      241 acgaagagtt caagaaaact cgcactttca agtttccgac atggctgtat ggtcctccga
      301 agggcaaact cttcaaattg gaagtagaag attgcccacg ttttggagac aaagcttatg
      361 ttgaattcga ttcggccaga acagcatttt tgagtattga tatgcaaata gatttttgcg
      421 gtccaaaagg ttatgttgat gtaatgggtt atgatcttgg gctaacttct gctcctataa
      481 agccaattat gcatgtttta gacacaataa gaaatggaac tgatattaag gtaatacata
      541 ccagagaagg acatcttccg gatctttcag atgcaccata taacaaggtt cttcgtagca
      601 aaattatagg tgatggtata ggaattggtg atattcccca aggtggactt ggacgattat
      661 taataagggg agaaaagaac tgggacataa tcgatgatct ctatccaatt cctggagaat
      721 acgtggtgga taaagcagga aaaggaggat ttggacaaag caacttacca ttgcttttaa
      781 agaatttagg aattacccac ttactaatta cgggaattac aacagatgta tgcgtacata
      841 caataatgag ggaagcaaat gataatggct actggtgtac ccttctaaag gatggtacag
      901 gcgcgacaga ttatggtaat tatcaggccg ctataaaaca agttaaaatg cagggaggag
      961 tattcggctg ggtttcagat tctagcaagt ttgtacaagc agtgaaatcc acttttgaca
     1021 ataaaaggtg gcaataaata aatgcgatat aagtctgaaa tctgtgagcc ttttcgggta
     1081 gagtttccat gtaatctgtt tagatcaaat atagattggc tataaaatga acagtgagac
     1141 tagataggat catccactaa aaaccttgtc tttgtagatt aatgtacata gacttagtaa
     1201 agttatgata ccgacaggtt ctccaagtgg tactacatca tcctctgtct tttaagttgt
     1261 ttaatacact ttaaacagaa caggtaagag tattcccaac cattagccat tagccatgaa
     1321 aagagaggct gtgctagacc gatattttaa tgatattact tttgagaagg ttgaatcgga
     1381 aaatgaagca tggagcaggt taaaagacaa gccgcggctt tggagtaaac aatgatggta
     1441 tgggatgatg atccaaactt gtcacaaaat ttccctacgt tagatgatat tttgctccgt
     1501 acgcatgaag agcattcttg aacgcatcaa taggcggtct cactaagcca gcacctatca
     1561 taccaatacc aggttcctta tgcgctatgg cggtatcaat tacaggcaat acacctgttc
     1621 ttaagacctt tcgaaaatca ataccagtag ctgttccctg aaaatcaagg attggaagtg
     1681 aaaatgtatc gttgagtgtc atagtaatgt cacgcatttg cttagtgtac gtaattgcat
     1741 cttcggctga tccgccgatc agcgataaaa ttgcaggtga gtctgcaaga gcaaaacccc
     1801 caatcccagc tgtctctgtt atggcactat cccccatatc cagatttgca tcatcaggac
     1861 catagcccgg gaaatagacc ccctcaatct tactggctgg tccaatgaac cacttatttc
     1921 ccagcgcact aacctttatt ccaaagtcag ttccatttct ggccatagca gtgacaagcg
     1981 tactatactc aatttccctt gccgcattca tgactgtttt acacgcagcc atactcatgc
     2041 atagaaagaa tatctcattt tcagaaaaat attttgtaat ttttaccaaa tcatccgtat
     2101 ttacagattc tataagatat ggtatcataa cactagcaaa cagcaatgtc ccagctgcag
     2161 gtctattatg caattcatct cccatgtgca aagcttttgc cattatactc tttagatcca
     2221 ctcctttatt cttcctaact gcttttgcta aaccaggtgc caaagtctca gaccaaaatt
     2281 tcaagctttc taccgcgtcc ctatcaaaaa gtccgaactg aaccttatcc tccacaaaac
     2341 ggccataaca tatgtttcca taggtttcat ttttcacaat caatactggc atcgatggag
     2401 aaataacacc ggccatagga ccaacagcgt cgtgatcgtg attaggagaa aactcaattt
     2461 ctccatcttc tatcatcttc accgcttcag tccagccctg agcatatcct tcgtagatca
     2521 tagtaccgac tattgcacct ttcatgggac cacacatcct cttccatgct atcggagggc
     2581 cagaatgaaa tattgaattc tttttcattt tgggcataac ttcaatagca ggttttatat
     2641 cgatcaaaaa cggccttgat ctaagaattc tatctgttgc aattttattt gctttctcta
     2701 ttctattttt tattagattg tccatcttcg atttatccca atttctgttt tgctttcatt
     2761 aagacatgaa aattcatggt acaaaatgag ttccagcatt cccgtctagt gactctgaaa
     2821 gtcttttcaa attaccaatt atagcttctt taccgccgtt ccgtataaat gctacagagg
     2881 cgcgtacttt tggacccata tcaccttctt ctaaatctgt tatattaagt cgattaattt
     2941 cattaagtct tatctttgaa acaagctgtt gattactctt accatagttt tcgtatagac
     3001 catccacatc tgttaaaagt attaattttg ttgcaccaat aagagttgcc actctttcac
     3061 tagcaaggtc tttatctact actgcatctg ctccagttaa tgttccattc ttctctatca
     3121 ctggtatgcc tcctccaccg catgcaacca ccaggaatcc agcatcaacc attgtacgaa
     3181 tcgcatgtga ttcaacgatc tggagtggct ttggagatgc tactactcgc ctgaatcctc
     3241 taccggcata ttcttttaat gtccaatcag gcctttcacg cattatcgac tcagcctgcc
     3301 cttcattgaa aaaaggaccg ataggtttag ttggattttg aaaagcggga tcgttcttat
     3361 caaccttgac tctagtaatc aaagtaataa cgtccttatc catctttctt tcctccagta
     3421 tattttttaa ggattgttgg atcatatagc ctatccaacc ctgggtttgt gctccacatg
     3481 catcaatcgg aaaagggggt gcatacttct tggcaatctc atttttcaga aggatatatc
     3541 ccacctgagg tccgttccca tgagttacta ctaccctgta atcttggact aaatccacta
     3601 ttttccttgc agcaggttga aaatttgcat cttgttcttc aaagcttcca ctttgtccac
     3661 ttcgtagtaa ggcatttcct cccaatgcga taactaaaga ctcttgagag ataaaaaaga
     3721 tattaaatgc tgtataattt aaacgtagtc aatattttga gtccgtttca tttaataaaa
     3781 ttaaaatttt atactctatg caatcatttt tcattttaaa taagtgttat caatcgagta
     3841 aggaatgtac aatcatataa tcataaagaa ccttcatcaa cctttttacg cggaaacatg
     3901 ctaagaaatt ctgtgtggaa ctttcggtca ataattgtat agagtgcggc agtcatgcca
     3961 ataccaatat cagcccctga tgtatgtcct ctatagctga
//
LOCUS       DASPFX010000256         3717 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_808286, whole genome shotgun sequence.
ACCESSION   DASPFX010000256 DASPFX010000000
VERSION     DASPFX010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3717
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_808286"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..334
                     /locus_tag="VD694_05540"
     CDS             <1..334
                     /locus_tag="VD694_05540"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HXW12205.1"
                     /translation="VKEEINVILHTIYRYPELFPKIGVDAGVNAIVQFGYDEHSPIDI
                     LGYSMNVASKITSLTGANKVSIGENVYESLDRKLQREFHELSISDGRWKYINYGTDKP
                     YRVYTLNS"
     gene            complement(592..1893)
                     /locus_tag="VD694_05545"
     CDS             complement(592..1893)
                     /locus_tag="VD694_05545"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HXW12206.1"
                     /translation="MSNEFDNSDVIIIGGGLAGLTTAALLARSGKVVTLFERSSKEIG
                     GRARSTEVDGFYLNQGPHALFLTDAADSILKEIGISFTGGTAGGKGKSYLISDGRKRE
                     VPGDYGSWLSSGKGNDTSVETDGSQFFNSPTEMDFSQLDGVTVQEWLDKNFHNTNDAE
                     IIKAILRLNTYGNDPEIQSIGSALRQIYVSSQAGGVMYVDGGWQTLVDGLLTVAKNSN
                     ARIVMDKKAISVKRTDSSAWQVLLSDKTQVSAKIVVIAAGPMDAYGLFDSKERPEMLS
                     KAAKEAKPVRLVCLDVALSSLPDKDALFALGVDRPLYFSVHSAYAKLAPEGGALIHVA
                     KYLGSSIAPKPREDQPELEELLDLMQPGWREVLVKKRPLPSMVVSNAVIGAATGGLAG
                     RPDVRIADNLYIVGDWVGKEGILSNASVASAKHAAQLILNE"
     gene            complement(1905..2156)
                     /locus_tag="VD694_05550"
     CDS             complement(1905..2156)
                     /locus_tag="VD694_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12207.1"
                     /translation="MIKNILNIEDGRKENSYNVDKRKGFSGIHHVIAGTSNPQSKIDF
                     HISILGTLSRINCKMTLDKKTKCIKSWILGKEKHLTASH"
     gene            complement(2153..2506)
                     /locus_tag="VD694_05555"
     CDS             complement(2153..2506)
                     /locus_tag="VD694_05555"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HXW12208.1"
                     /translation="MVPSLVVWEESEVSEDFVRVAETKDIQPSSMKAYDLAGEKVCIV
                     NVEGNYYAIGNVCTHVGGPLNEGTLEGYNVECPWHGSKFDVRTGEPTKPPARQPVQSY
                     EVKVEGNNILLRKHQ"
     gene            complement(2579..2836)
                     /locus_tag="VD694_05560"
     CDS             complement(2579..2836)
                     /locus_tag="VD694_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12209.1"
                     /translation="MVKGQDLQILGIVAKLAHSDVNKEVLETDIIEQSELSESEVRSH
                     LNELEWLHLAKEASPKANRAEFRLWNITEKGLQELFTKESG"
     gene            complement(3221..>3717)
                     /locus_tag="VD694_05565"
     CDS             complement(3221..>3717)
                     /locus_tag="VD694_05565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12210.1"
                     /translation="GYDNENHVISSLTKENIKEKYKRDGPPLESELNTQEYLERKQAQ
                     DDTHPKVFVNGIPFMAKEPGVSVESQRTGETLNIPWEEVIFKRVKTSDDVDIGDIETV
                     ANEYIVVREGVGKIRRFYIPKSQINNYDGSALYVAVPGGLVSAKFERDVPPTPEEVKS
                     LSSG"
BASE COUNT         1019 a          819 c          665 g         1214 t
ORIGIN      
        1 ggtcaaggag gaaattaatg tcatattgca tacaatatac agatatccgg aactcttccc
       61 caagataggt gtagacgcag gagtaaacgc aattgttcag tttggttatg atgaacactc
      121 acctattgac atactgggat atagcatgaa tgtagcatct aagataactt ccctgactgg
      181 cgcaaataaa gtgtccatag gagagaatgt atatgaatca ttagatcgca aattacagag
      241 agaatttcac gagttatcga tctcggatgg tcgatggaaa tatatcaact atggtactga
      301 taagccttac agagtttata ctctaaattc ttgaaaagca tcaatactat ttagaagata
      361 ttggtacttg cctatttgat atacagagat tttacatgaa atagtcaact agatagatgg
      421 ctgagcctag atggattaat tcactttata atttagggga tcaaggataa gaaattttgg
      481 atccagataa gacgtatgat gttatgtttt gaagacgaat atattaactt atgaaaaaat
      541 ttgcgcaagc attatcgctt tgatattgat tgtctaatta agaaaacata gtcactcatt
      601 caaaattagc tgggcagcgt gcttagcgct tgcaactgac gcattagaca atattccctc
      661 cttgcctacc cagtctccta ctatgtacaa attgtctgca atccttacat caggccttcc
      721 tgctaatccg cctgttgcag caccaatcac agcattagac accaccatgc tgggcagtgg
      781 tctcttctta acaagcacct ctctccaacc tggctgcatt aaatcgagga gctcctctaa
      841 ctccggctga tcctctcttg gtttaggtgc aatcgaagaa ccgagatatt ttgcgacatg
      901 gattagggcc ccgccctcag gagcaagctt tgcatatgcg gaatgaaccg aaaaatatag
      961 tggacggtct acccccaaag caaacagtgc atctttgtct ggaagactgc taagagcaac
     1021 atccaaacac actaggcgta ctggttttgc ttcctttgct gccttggaca gcatttctgg
     1081 tctctcttta ctatcgaaga ggccatatgc atccattgga cctgccgcta tcacaactat
     1141 ctttgctgat acttgggttt tgtcagataa cagaacttgc catgcagaag aatcagttct
     1201 tttcacgctt attgcttttt tgtccatgac aattcttgca tttgagtttt tggccactgt
     1261 tagaagtccg tctacaagtg tctgccagcc tccatctaca tacatgactc ctcctgcttg
     1321 actactcaca tagatttggc gaagcgccga tcctatgctc tgaatctctg gatcgtttcc
     1381 ataagtatta agtctcaaaa ttgccttaat tatttcagca tcatttgtat tgtgaaaatt
     1441 cttgtctaac cattcctgta cagtaactcc gtctaactgt gagaaatcca tttcggtagg
     1501 tgaattaaag aactgacttc catctgtttc cactgatgtg tcatttccct taccagaaga
     1561 tagccagcta ccataatcgc ccggaacttc acgtttccta ccatcactta ttaaataaga
     1621 tttccctttt cctccagcag tgcctccagt aaaactgatg ccaatctctt ttaaaattga
     1681 gtctgctgcg tcagtgagaa atagagcgtg tggtccttga ttaaggtaaa aaccatctac
     1741 ttctgtactt cttgcacgac ctcctatttc tttagatgat cgttcaaata gcgttactac
     1801 ttttccagaa cgtgcaagca gcgcagcagt agtaagacct gcaagccctc ctccaataat
     1861 tattacatct gaattatcga attcatttga cattggataa ttatttagtg gcttgctgtt
     1921 aagtgtttct ctttaccgag tatccaagat ttaatacatt tagttttttt atcaagggtc
     1981 atcttacagt taattctact caaagttccc aaaatactga tatggaaatc tatcttactt
     2041 tgtgggttac tggttcccgc tattacatga tgtattccag aaaaaccctt gcgcttatct
     2101 acattgtaac tattctcttt tcttccatcc tcaatgttta gaatattctt aatcattgat
     2161 gttttctaag tagtatattg ttaccttcta cctttacttc ataggactga accggctgcc
     2221 gtgctggagg tttagttggc tcccccgtcc tgacatcaaa cttagaacca tgccagggac
     2281 attccacatt atatccttca agcgtacctt catttagcgg tccaccaaca tgggtacata
     2341 catttcctat agcatagtag tttccttcta cattaacaat acagactttc tcgcctgcca
     2401 agtcgtatgc tttcatgcta gatggttgga tgtcctttgt ttcagcaacc cttacaaagt
     2461 cttcactcac ttctgattcc tcccatacta ctaaactagg gaccaaatgt tatataggtt
     2521 tccccactca atattaatag aataaaagat taatgatagc atctgcgcaa aagtgaagct
     2581 aaccagattc ttttgtaaat aattcctgca accctttctc tgttatattc cacaatctaa
     2641 attctgcacg attagccttg ggtgatgcct cttttgctaa atgcagccat tccagttcat
     2701 tcaagtgact cctcacttcg gactctgaaa gttcactttg ctcaattatg tccgtttcga
     2761 ggacctcttt attgacgtca ctatgtgcca atttggcaac gataccaaga atttgtagat
     2821 cttgcccttt taccattatc ttctgattga ggtattagcg atttaaaggt atacaagacc
     2881 atgttaaaaa ggatacatcc tatttcactg agaagggacc atacacaata aaattagagc
     2941 catatatctt gacttcataa tcaataatga cgatatggaa gaagggaacc tggatccttt
     3001 gtcctttgta gttacattag acaacgtcaa tatgtccact gcacagggat ttgtggtaga
     3061 gaattcatct cgggtgttgt aacgaaaact gggtaccctt tattgcaaat tggataatgc
     3121 tatttttatt ccgttttttt ttgatagctt gcaagagccg aggtaatata tcgaatttga
     3181 aatgacggcg ctgccattac tattttcggt aacgcttcgt ttatccacta gataatgatt
     3241 ttacttcttc tggagttggt ggcacatctc gttcgaactt ggcacttact agtccgcctg
     3301 gaacggctac ataaagagca cttccatcat aattatttat ttgtgatttg ggtatgtaga
     3361 aacgccttat tttacccacg ccttctctta cgactatata ctcattggca accgtttcta
     3421 tatcccctat atctacatcg tctgaagttt ttactctttt aaagataacc tcttcccacg
     3481 gaatattcag agtttcgccg gttctctggc tctccactga tacgccaggt tcttttgcca
     3541 taaatgggat accatttaca aaaaccttag gatgcgtatc atcttgagct tgcttcctct
     3601 ccagatattc ttgcgtgttc aattcggact cgagtggcgg accgtcacgc ttgtactttt
     3661 cctttatgtt ttccttggta agtgaggaga taacatggtt ttcgttatcg tagcctt
//
LOCUS       DASPFX010000257         5643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1172097, whole genome shotgun sequence.
ACCESSION   DASPFX010000257 DASPFX010000000
VERSION     DASPFX010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5643
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1172097"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /locus_tag="VD694_05570"
     CDS             <1..771
                     /locus_tag="VD694_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase C-terminal
                     domain-containing protein"
                     /protein_id="HXW12211.1"
                     /translation="QEAMIIFDNAFIPNELLFMDGEYEFASMLVERFTCYHRRSYVCK
                     TGLGDVLIGAAASVADYNGISNASHIKDKLVEMTHLNETIFGAGIASSYQAHKTPSGN
                     YQNDDMLANVCKHNVTRFPYEIGRLAQDIAGGLMVTMPSEKDFRSPETGPLLEKYLKG
                     RKGVSTENRMRILRLIENMTLGRNAVGYLTESMHGAGSPQAQRIQIARQMQLGYKKKL
                     AKDLAGVDEGESAQVVNEQSEYFDRIFGTNTNTNTNSN"
     gene            883..1413
                     /locus_tag="VD694_05575"
     CDS             883..1413
                     /locus_tag="VD694_05575"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HXW12212.1"
                     /translation="MDDAEFKNLVKIWPDFPTKGISFKDVNPLIRTSESLNYLHKRLV
                     DICSHFEVNKIASIEARGFFVGSLLASSLDKGLVLIRKEGKLPGPTVKESYTIEYGTR
                     VMEIQQDAILSGEKILIVDDLLATGGTALAAASLVEKLGATVVGFVFIICLNYLEGHN
                     KLRDKGYKVNTILEFE"
     gene            1414..2214
                     /locus_tag="VD694_05580"
     CDS             1414..2214
                     /locus_tag="VD694_05580"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HXW12213.1"
                     /translation="MKTHHAEIGIIGGTGIYDPELLTNPESVKIYTPYGKTSDLVTIG
                     EYNGRSVAFIPRHGKGHTIPPHKVNSRANIWALNSLGVSRIIAPSAVGSLQEKYRPGD
                     IVLPNQFVDFTKKRVYTFYDEGQVCHISCADPFCNELRDIFLKTSNKLKYDVHEGSTY
                     ICIEGPRFSTRAESKFFKDILHADIIGMTLVPECILAREMQICYMSIATVTDYDVWYE
                     NPVSSKEILEVLAKNAKKIKELLGALIPAIPETRNQCTCKAALNDAMV"
     gene            complement(2204..2509)
                     /locus_tag="VD694_05585"
     CDS             complement(2204..2509)
                     /locus_tag="VD694_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12214.1"
                     /translation="MIRDTFTSDEPEIYVEKAQGGQYASKLRGYFIIKDIKLKFNAIA
                     FGRIGGHNISLNLTKKTLSKLEELGYDTEDFQLVLQRKLVEGQVILIDPATKTEIKP"
     gene            complement(2506..2919)
                     /locus_tag="VD694_05590"
     CDS             complement(2506..2919)
                     /locus_tag="VD694_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12215.1"
                     /translation="MSTVPENKVVYFGVININENNRTIGAVDIWRNVINKNLYCEEKR
                     LGVLEIVDYIGMPSIPEGQEWAVAINRNRKGKERWKLVKLVKDGIFSFTDTDDETTVN
                     VNVVDFKIVDDNWWSFLVSKNINRSIEITNEENPK"
     gene            complement(2937..3266)
                     /locus_tag="VD694_05595"
     CDS             complement(2937..3266)
                     /locus_tag="VD694_05595"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HXW12216.1"
                     /translation="MSKINLSDIEAQIFLYLIKNDKTSLEKISNNLNLSLKEAGQLLE
                     DLVEKGLILELSGMYQTFHPKFSIINAYRRHCMKMGIEFKKNVQVDSLASSIERMHES
                     ARTKYGN"
     gene            complement(3423..4319)
                     /locus_tag="VD694_05600"
     CDS             complement(3423..4319)
                     /locus_tag="VD694_05600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HXW12217.1"
                     /translation="MLTIFGTVALDTTRTPYHIVERTLGGTATFSSISASNYAPTSLI
                     GIVGHDFPEAYLQLLKNRLDIRGLKVSQTEKTFHYDSSFGYDLAKRTTNKTELNVIAN
                     YQSTVPEEYIDSEYVYLANNDPIQNMNLLKLFSSPKLVVCDTMDFWITNKREDVIKLI
                     NKVDGIMLNESEAKLLFKENNILKCARLLVSNGPSFAVINKGENGSLLFHDNEFYPLP
                     AFPTEIIKDPTGAGDSFGGAFIGYLSQQEKQDSRALKNAMIYGNIMGSFTIEDYGIQR
                     LVSVTQQDIMNRLQKYKEIFTF"
     gene            4371..4946
                     /locus_tag="VD694_05605"
     CDS             4371..4946
                     /locus_tag="VD694_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HXW12218.1"
                     /translation="MAETRYDKIVIGFSGASGIIYGIRLIEILHSINIETYLIISEWA
                     KKNIEIETDKTLEYVKSLSSVNYDNFRLDASVSSGSFLHDGMVIVPCSMKSLSSIANG
                     YDDTLISRAASVTLKESRKLIIVPRETPLSRIHLENMLKLHQAGAIILPAMPGFYHKP
                     STIEEIVDHLVGKILDQLNIKHDLFKRWKDQ"
     gene            complement(5240..>5643)
                     /locus_tag="VD694_05610"
     CDS             complement(5240..>5643)
                     /locus_tag="VD694_05610"
                     /inference="COORDINATES: protein motif:HMM:TIGR03665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HXW12219.1"
                     /translation="NFDQYGALKARDIISAISSGFSPERAFRILDEETVLQILDLRNF
                     TSSSNSINRIKARIIGEKGKARKNLEELTSTFISIYGHTIALIGNYEEMKLATDAIML
                     LINGRSHKTVYEMLYQAKRRAKIEKLQLWEN"
BASE COUNT         1768 a          997 c         1034 g         1844 t
ORIGIN      
        1 caagaggcaa tgataatttt tgataatgct ttcattccaa atgaattgct cttcatggat
       61 ggggaatacg aatttgcttc tatgcttgta gagagattta cgtgctatca caggcgcagc
      121 tatgtctgca agacggggct tggtgatgta ttgataggtg ctgctgcatc ggtcgcagat
      181 tacaacggaa tttcgaatgc ttctcacatt aaggataaac tggtcgaaat gacccacctg
      241 aatgaaacaa tctttggtgc aggtatagca tcatcttatc aagcccataa gaccccctct
      301 ggaaattatc aaaatgatga tatgcttgca aatgtttgta agcacaatgt aactaggttt
      361 ccatatgaaa ttggtagact tgcgcaggat attgctggag ggttgatggt aacgatgcca
      421 tctgaaaagg attttcgcag tcctgagaca ggaccgcttc ttgaaaaata cctcaagggt
      481 cgaaaaggag tttctactga aaataggatg cgtattttga gattgattga aaatatgaca
      541 cttggacgaa atgcggtagg ttatcttaca gaatcaatgc atggggcagg ttctccccag
      601 gctcaaagaa tccaaattgc aagacaaatg caattgggat ataagaaaaa attggcaaag
      661 gatctagccg gtgtagacga gggcgaatct gctcaagtag ttaatgagca gtctgaatac
      721 tttgatagaa tattcggaac aaatacaaat acaaatacaa attcgaacta gatttctagg
      781 tgcccagtaa agagaacgaa tagttgattc tttttcttgc taacgtaatg ctctatcgga
      841 acgttaatta tgtagtagaa taggatatga aaagcgataa taatggacga cgctgaattt
      901 aaaaacctag tcaagatttg gcccgatttt cctacaaagg gaatttcatt caaggacgta
      961 aatccactta taagaacttc tgaatcgttg aattatcttc acaaaaggtt agttgatatc
     1021 tgtagccatt ttgaagtaaa caagattgca tcaattgaag cacgtggttt ttttgtgggt
     1081 tctctgcttg catcaagcct cgataaggga ttggttttga ttagaaagga aggaaaattg
     1141 cctggtccaa ctgtaaaaga atcatacacc atagaatatg gaactcgcgt catggaaatt
     1201 caacaagacg caattttgag cggagaaaaa atactgatag tagatgactt acttgcaact
     1261 ggaggtacag cgctggcagc tgcatcactt gtcgaaaaat taggggcgac agtagttggg
     1321 tttgtattta taatttgtct aaattatctg gaaggtcata ataaattgag agataaaggt
     1381 tacaaggtta atactatttt ggagtttgaa taattgaaaa cacatcatgc tgaaattggt
     1441 attatcggcg gaactggtat ctacgatccg gaattattga cgaatcccga atcagtaaag
     1501 atttatactc catacggcaa gacctccgat ctggtgacta ttggtgaata caacggtcgc
     1561 tctgttgcat tcattcctcg ccatggtaaa ggacacacaa ttcctccgca caaagtaaac
     1621 agtagggcaa acatatgggc tttaaattca ttgggagttt cgagaatcat tgctccgtcc
     1681 gccgttggaa gtcttcaaga aaagtacaga cctggtgata ttgttttacc aaatcaattt
     1741 gttgacttta ctaaaaaaag agtgtatact ttttatgatg aagggcaggt atgtcatatc
     1801 tcatgtgcag atccattttg taatgagctt agagatattt tcttaaagac cagtaacaaa
     1861 ttaaaatacg atgtgcacga aggttcaact tacatttgta tagaaggccc gcgattttct
     1921 actagagcag aatcaaaatt tttcaaggac atcttgcatg ctgacataat tggtatgacg
     1981 ctcgtaccag aatgtatact tgcaagagag atgcaaatat gttacatgtc gattgctact
     2041 gtcactgatt atgacgtttg gtatgaaaat ccagtttcat ccaaggaaat actggaagta
     2101 ttggcaaaaa atgcaaagaa gataaaagag ttacttggcg cactaatacc tgctattcct
     2161 gagacaagaa atcaatgtac gtgtaaagct gcattaaacg atgctatggt ttgatttcag
     2221 ttttggtagc aggatctatg agaataactt gtccctcaac tagttttctc tgcaatacta
     2281 actggaaatc ttcagtatca taacctaatt cttctagttt agatagagtc ttttttgtca
     2341 aatttagact gatattgtgt cctccgattc tcccaaaagc aatagcgttg aactttaatt
     2401 tgatatcctt tatgataaaa tagcctctta atttgctcgc atactgtcca ccttgagcct
     2461 tttctacata tatttccggt tcgtcagatg tgaaggtatc tcgaatcact ttggattttc
     2521 ctcatttgtt atttcaatac ttctgtttat gttcttggaa acaagaaaac tccaccagtt
     2581 gtcatctaca atcttgaaat ctacaacatt aacgttaact gtggtttcgt catcagtatc
     2641 tgtgaacgaa aagattccat cctttactaa ttttactaat ttccatcttt ctttgccctt
     2701 tctattccta tttattgcta cggcccactc ctgaccctca ggaatggaag gcatacctat
     2761 atagtctaca atttctagga cgcccaatct tttttcttca cagtagagat tcttatttat
     2821 tacatttctc cagatatcaa ctgctcctat cgttctgttg ttttcattaa tattgataac
     2881 gccaaaatag actaccttgt tttctggaac ggttgacatt tgacaactaa ttactcctaa
     2941 ttgccatatt tagttcttgc agattcgtgc attctttcta tagaagaagc aagactatct
     3001 acttgaacgt tttttttgaa ctctatgccc atcttcatgc aatgtcgacg atatgcgttg
     3061 ataatcgaaa attttggatg aaatgtttga tacataccag aaagttctaa aatcaatcct
     3121 ttttcaacca agtcttctag caattgtcca gcctctttga gggaaagatt taggttattt
     3181 gaaatctttt ctagcgaggt cttgtcattt tttatcaaat acagaaaaat ctgtgcttct
     3241 atatccgata ggttaatttt cgacattagc gaatccttga tgttttccaa ttgtcatcag
     3301 attaatgcaa ttgattaatg aatatctcct atttacgtta tcgatccgaa aataaaaaat
     3361 gggttataca atatatttcc tcagtaacca actctgaaga ttatttgttt tgttagaaat
     3421 tgttagaatg taaatatttc tttatatttt tgaagtctat tcatgatgtc ttgttgcgtt
     3481 acactgacaa gcctctggat tccgtagtcc tctattgtga aagaacccat gatgtttcca
     3541 tatatcattg cattcttcaa tgccctagaa tcctgttttt cttgttggga taaatatcca
     3601 ataaatgcac caccaaatga gtctcctgct cccgtagggt cctttattat ttccgtcgga
     3661 aaagctggaa gtggataaaa ttcattgtca tgaaaaagaa gagatccatt ttctcccttg
     3721 tttattaccg caaaagatgg tccattggac acgagcaagc gagcacattt gagaatatta
     3781 ttttctttaa atagtaattt ggcttccgat tcatttaaca ttattccatc tactttattt
     3841 atcaacttta taacatcttc tcgcttattg gtaatccaaa aatccattgt atcacaaact
     3901 accaactttg gactggaaaa tagttttagg agattcatat tttgaattgg atcattgttt
     3961 gcaagataaa cgtattcaga atcaatgtat tcttctggta ctgtagattg gtaattcgca
     4021 attacattta gttcagtctt gttagttgtt ctctttgcaa gatcatatcc aaatgaggaa
     4081 tcataatgaa aagttttttc agtttgacta actttcaatc ctctgatgtc aagacggttt
     4141 tttaacagtt gtaaatatgc ctctggaaaa tcatgtccta caattcctat aagtgaagta
     4201 ggggcgtaat tagaggctga aattgaggaa aatgtagctg tacctcccaa ggttctttca
     4261 actatatgat atggagtacg cgtggtatct aatgcaactg ttccaaatat cgttagcatg
     4321 ctgttcgatt aataacaaca ataaataagt gttcaacatt attttgaata ttggcagaga
     4381 cgagatatga caagattgta attggatttt ctggagcatc gggtattatt tacggaataa
     4441 ggctgattga aattctacat tcaattaata ttgaaacata tcttataatc agcgaatggg
     4501 caaaaaagaa tatagaaatt gaaaccgata aaactttaga atatgtgaaa tctctctctt
     4561 ctgttaatta tgataatttc agattggatg catctgtttc aagtggatca ttccttcacg
     4621 atggaatggt catagtacct tgtagcatga aatcgctgtc aagcattgca aatggctacg
     4681 atgacactct tatttctcgt gctgcatctg ttaccttaaa agaatccaga aaactgatta
     4741 tagttccaag ggaaacccca ctttcaagaa ttcaccttga aaatatgtta aaattacacc
     4801 aggctggggc aatcatccta cctgctatgc ccggattcta tcacaagccc tcgacaattg
     4861 aagaaatagt agatcacctg gttggcaaga ttcttgatca actaaacata aaacacgacc
     4921 tctttaaaag atggaaggat caatagacat tacccctggt tatagagcag cagaatctta
     4981 attgcttttt cctcacattt atcctgcaag gcattgaaaa cgattctaaa cgacatgtaa
     5041 aaaaagaata ggtaaatcct gttagaaaga tatcctgcaa aagaacattg ctcaaatcat
     5101 cttgataatt gaattaaagg attctcatac aattctctct gaatgataat ggtaacagaa
     5161 aataaacatt acgcgcaagg tatcatagct acagaataaa aaaaacttga tatgtaaaat
     5221 agtaacatct cggggagatc tagttttccc aaagttgtaa tttttcaatt tttgctcttc
     5281 tttttgcctg ataaagcatt tcatagacag tcttgtggga tcttccattg attagtaaca
     5341 ttattgcgtc agtggccagc ttcatttctt catagttgcc aatcaatgct attgtatgtc
     5401 catatattga aataaacgta cttgttaatt cttcgaggtt ttttcttgcc ttgcctttct
     5461 caccaataat tctggctttt attcgattga tagaattgct tgaacttgta aaattacgga
     5521 gatctaatat ttgaagcacg gtttcttcat ctaagattct aaatgctctt tcaggagaaa
     5581 aaccactaga gatggcactg ataatatctc ttgcctttaa ggctccgtat tgatcgaaat
     5641 tct
//
LOCUS       DASPFX010000258         2810 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_699503, whole genome shotgun sequence.
ACCESSION   DASPFX010000258 DASPFX010000000
VERSION     DASPFX010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_699503"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VD694_05615"
     CDS             complement(<1..258)
                     /locus_tag="VD694_05615"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HXW12220.1"
                     /translation="MLTSTKLEDEELRIINEKRMKKLQQIMNEKELLKNITEPLNLDD
                     SDFTQTINKFPLLLVDFWAPWCGPCRMMSPIIDQVGKEYQGK"
     gene            347..988
                     /locus_tag="VD694_05620"
     CDS             347..988
                     /locus_tag="VD694_05620"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HXW12221.1"
                     /translation="MTERVNDSKDENFEVTDNGALDTDNDNNAEEKVADSKVSDAVMR
                     REIEFLNGELEKEREVSEKNLSKLRYLMADFDNYRKQMEKQVESKIEENRGLLFIKIL
                     KIYDDCILALETLKNGQYDSTVVGGIQGIMSNFESFMKEEGMVEIESMNTPFDPNVHD
                     AIGFVTNDLAPDNTIMEVVRKGYLLNNKVLRPSSVILSKRTVTNKDINENDKE"
     gene            1001..>2810
                     /gene="dnaK"
                     /locus_tag="VD694_05625"
     CDS             1001..>2810
                     /gene="dnaK"
                     /locus_tag="VD694_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HXW12222.1"
                     /translation="MGKIIGIDLGTSNSAASVMIGGKPTIIQAAEGTSVGGKAFPSYV
                     AFTKDGQLLVGEPARRQMVTNPEGTVIAAKRKMGTDFKFRVYDKEYTPQQISSLILQK
                     IKRDSEAYIGETVDKAVITVPAYFNDNQRQATKDAGEIAGLEVVRIINEPTAASLAYG
                     LDKVNKDLKIMVFDLGGGTLDVTIMEMGGGVFQVKSTSGDTQLGGTDMDNSVIEYIIQ
                     EFKNQTSIDIRNDKAAMMRIKEAAEKAKIELSNVMSTEINLPFLSYDASSGPKNLVLT
                     LSRSKLEELLRPIIERCKTPMLQAIEDAKLKPTEIDKIILIGGPTRMPIVRQFITSVM
                     SKEPERGIDPMEAVAMGAAVQGAIIAGDVTTDILLVDVTPLTLGVEVLGGLKEPLIDR
                     NTTIPTKKSKVFTTAADYQNAVTVHVVQGERSMAADCVSLGMFNLSGIPPAPRGIPQV
                     EVTFDIDANGILNVTAKDLATSKESKITISANTKLSKDDIERLKKESEQFAEQDKKKK
                     EEAEVKNEADNLTYTAEKLIQQDLKDKIKQEQVEKVNISVKELKEAISSNNIEEIKKK
                     MESLKNIIGEISTEAYKSAGAAASQQTTSSQNSESAN"
BASE COUNT         1006 a          442 c          612 g          750 t
ORIGIN      
        1 tttgccttgg tactctttac caacttgatc aattattgga gacatcattc tgcagggtcc
       61 gcaccaagga gcccaaaaat caactagaag gagtggaaat ttgtttatcg tctgagtaaa
      121 atcggagtcg tcaagattga gtggttctgt gatatttttt aaaagttcct tctcattcat
      181 tatctgttgt agctttttca ttcttttttc gttaatgatc cttaattctt catcttccaa
      241 tttggttgat gttaacaagt gaccatgttt tggcttatta tgttttttga tttgtagatc
      301 attgccgata tctaattatc tgagagaagt caaaatattt tcgatcttga cagaaagagt
      361 aaatgatagt aaggatgaga attttgaggt taccgataat ggcgcattag atactgataa
      421 tgacaataat gccgaggaga aagttgctga ttctaaagtt agcgatgcag taatgaggag
      481 agaaatagaa tttttgaacg gtgaactcga aaaggaaaga gaagtatctg aaaagaattt
      541 gtcaaagctt aggtatctta tggcagattt tgataattat cggaaacaaa tggagaaaca
      601 ggtggaatca aagattgaag aaaatagagg tctgctcttt ataaagatct tgaagattta
      661 tgatgattgt atattggcac ttgaaaccct aaaaaatggc caatacgatt caactgtagt
      721 tgggggaatc caaggcataa tgtccaattt tgagagtttt atgaaggaag agggcatggt
      781 cgaaatagaa agcatgaaca cgccattcga tccaaatgta catgatgcta ttggatttgt
      841 aaccaatgac ttggcgcccg ataatacaat aatggaagta gtaaggaagg gttatttact
      901 aaacaataaa gttttaagac cttcttctgt cattttatct aaacgaacag ttacaaataa
      961 agatatcaat gaaaatgata aggagtagag aataaagatt atgggtaaaa ttattgggat
     1021 agaccttgga acaagtaatt cggcagcatc tgtaatgatc ggtggaaagc ctacaataat
     1081 tcaagctgca gaaggaacat cagttggtgg aaaagccttt ccgtcatatg ttgccttcac
     1141 caaagacggc caactgctag tgggcgagcc tgcaagaagg caaatggtaa caaatcctga
     1201 agggactgtt atagctgcta agcgcaaaat gggtactgat ttcaaattta gagtttatga
     1261 taaggagtat acacctcaac agatttcatc cttgattctg caaaaaataa aaagagactc
     1321 tgaagcctat attggtgaaa ctgtagacaa ggccgtgata acggtcccgg catacttcaa
     1381 tgataatcaa agacaggcaa cgaaagatgc aggagaaatc gcaggactag aagttgttag
     1441 aattattaat gaaccaacag ctgcttcgtt ggcatatgga ttagataaag tgaacaaaga
     1501 tttgaagata atggtctttg atctaggcgg aggaacacta gatgttacca ttatggaaat
     1561 gggtggtgga gtatttcagg taaagagtac ttctggggat actcaacttg gtggtacgga
     1621 tatggataac tctgtgatcg aatatatcat tcaggaattt aagaatcaaa cttctatcga
     1681 tattcgtaat gataaagctg cgatgatgcg aatcaaggag gcagcagaaa aggcaaaaat
     1741 tgaattgtct aatgtaatga gcactgaaat aaatttacca ttcttatctt acgatgcatc
     1801 atcgggtcca aaaaacttgg tcttgacact atcgagatca aagctagagg aattattaag
     1861 accaataatt gaaagatgta aaacacccat gttgcaagca attgaggatg caaaattaaa
     1921 accaactgag atcgataaaa ttatactgat tggtggaccg acacgcatgc caattgttcg
     1981 acaattcatc acaagtgtaa tgtcaaagga acccgaaaga ggcattgatc ctatggaagc
     2041 cgtagctatg ggagctgccg ttcaaggggc aatcattgca ggagatgtaa ctacggacat
     2101 acttttggtt gatgtgactc cactaacttt gggagtggaa gtactaggag gattgaaaga
     2161 accacttatt gatagaaaca cgactattcc tacaaagaag agtaaagtct ttactactgc
     2221 tgcagactat caaaacgcag taaccgtgca cgtagttcag ggggaaagat cgatggcagc
     2281 cgattgcgtt tccttgggaa tgttcaactt atcaggaata ccacctgcgc caagaggaat
     2341 tccacaagta gaagttactt ttgatattga cgcaaatggc atactcaatg tcactgcaaa
     2401 agacctcgct acttcgaagg aatccaaaat aacaatttct gctaatacca aactctccaa
     2461 agacgatatt gaaagactaa agaaggaatc agagcagttt gctgaacaag ataaaaagaa
     2521 gaaagaagaa gcagaagtga aaaatgaagc agacaattta acgtatactg ctgaaaaact
     2581 tatacaacag gatttaaagg acaaaataaa acaggaacaa gtagaaaaag tgaatatctc
     2641 cgttaaggaa ttgaaggaag cgatatcatc aaacaatatt gaagaaataa agaagaagat
     2701 ggaatcccta aaaaatatca ttggggaaat aagtaccgaa gcatataaat cggcgggggc
     2761 tgctgcttct caacaaacaa cttcatctca aaattctgaa agcgctaatc
//
LOCUS       DASPFX010000259        12835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1024625, whole genome shotgun sequence.
ACCESSION   DASPFX010000259 DASPFX010000000
VERSION     DASPFX010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 12835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12835
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024625"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VD694_05630"
     CDS             complement(<1..201)
                     /locus_tag="VD694_05630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12223.1"
                     /translation="MSNRKCLARIDGNVLLCVILSLLVAIIIFFPTHSFGAARSESYS
                     YNESRSNNDQLDIQREIAGKDLV"
     gene            complement(510..719)
                     /locus_tag="VD694_05635"
     CDS             complement(510..719)
                     /locus_tag="VD694_05635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12224.1"
                     /translation="MPFGKSPSVVTDISLPAIGFFDTESTNFPETVYSASPVILSFSL
                     TFRLKEVSVDNTAVRVAPVPLVLVT"
     gene            1206..2447
                     /locus_tag="VD694_05640"
     CDS             1206..2447
                     /locus_tag="VD694_05640"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HXW12225.1"
                     /translation="MLNPESKALTDDCDSKKSNKISVVLLTQDPLKPMFQSPHKVMSS
                     IPRELSKEIIVVHYKSRNRTGDFDEALESTKGDAHYPHEKILHVRVEGEFASGVMKGI
                     ELSAGKYILVMDADLPYSRDIIPELVSALIANPNFIIVASRFVKDAHVQQIPFIQNAV
                     GKTARIIARYGLKIKNVKDPTSACFAFSREIVKDIKFEGKGKEALLEILVKINSNKNN
                     NNVSVKEIPIKQHNTVITRKLDRDRILNYSKDVWQLYRYGIKSKPNNSSDVAKPKRKL
                     SKSVMFLSKAGRFFTVGASGLAVNYAASFLLTSLIPNIWYIHATLFGIILSITSNFIL
                     NKVWTFEDRNFSPRHFLRQYVLFFALCTLGAVIQLSLVFAFVEYADIQYAVSLLLAVC
                     IASLSNFLLNKKITFGEKIWE"
     gene            complement(2877..3200)
                     /locus_tag="VD694_05645"
     CDS             complement(2877..3200)
                     /locus_tag="VD694_05645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12226.1"
                     /translation="MLKYSETGWKHETGFDIQKYRFTIGTINRSKVSNEQQTKIEKIS
                     LVAFLGEDQKKPFIKICRRLKQNNKHFYQNKNLHATLFGFGPKVSMIIRQLKEKYNYL
                     QNLVK"
     gene            3439..5439
                     /locus_tag="VD694_05650"
     CDS             3439..5439
                     /locus_tag="VD694_05650"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HXW12227.1"
                     /translation="MTFFITPETIDRVINGYPVSYTKNFMQNFLIFQKNFIYLALTLI
                     LGSVFLIFNFQTTYSQIPEVSYLDVNDTSSVSKFSVAAWFKTSANYDSDAFIVNKPGS
                     SNNLNYGIWMTSDEKLRGGFETSGGSPMYATSPQSYSDGMWHYVTVTYDGSDIILYVD
                     GVQVATKKTSGSPDMGDEPVRVGADSTTLGDYFIGNVDEIRVWSVALTPTQVSDAYHD
                     NADTKYQELYLDFSEPIESLNVTSVALNQTALNQTDILLTNDTAMTNDTLTQVNVTLP
                     NQTGILPPASIENDTGIDNETSTNIPLLQEIPDVNETGITNETQDNQSTTLPPEENNS
                     PEAFDQNISVDMDGQVDITFRATDEDNDPLKFDITADPLQGTLTNLDGEKGTATYVPQ
                     QGYSGSDQFQFRVIDDKGFESNVAQVDITVEESQSNETEASDLTETEGDTTNETMPEQ
                     STGTGAFEQTNQPPNADAGNDISAEVNTQVELDGSQSTDEDGQIVSYKWEQTGGPEIN
                     LEQSNEQTASFDVPESAADSKLTFKLTVVDDKDASDSDDASVQVKTVENQPPKADAGG
                     DKNAEVNTEGKLDGSKSSDEDGEIVSYKWEQTDGPKVDLKNADEQTASFDVPESAADS
                     KLKFKLTVVDDKDASDSDNTTVEIQSVPQESDEESNSNGKSD"
     gene            complement(5488..5835)
                     /locus_tag="VD694_05655"
     CDS             complement(5488..5835)
                     /locus_tag="VD694_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12228.1"
                     /translation="MRSTVSKHEVLILLSGPPWSSKTVFLLEILKGLNDVYFVGGAGT
                     STVCIRYYSFKSNAKYLLIYKIIIIIVTSNLVRFSKRRFSAIVKILLSFGVMYGTSIQ
                     YSVFNSCTIKHIE"
     gene            complement(6297..7223)
                     /locus_tag="VD694_05660"
     CDS             complement(6297..7223)
                     /locus_tag="VD694_05660"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HXW12229.1"
                     /translation="MNSIESLRFDFNTQISELGKIKNDKISDNYIFVGSGDSYVAGLM
                     VEYVTDHKCVCYSASDLSNSRFNDDKTYCFVSVTGRTKANIAVARRATEAGVNTIAIT
                     MNQDSKLAQACKRIVALDLRSKKFPLAGFSTFTANVLTCLQIAGLKIPQKFDNWHNNG
                     VKLSREFLDSKTHIDKLDDVTISILGNSILYPLAYYTSLKMTEFFGITAFAHKLEEFC
                     HSPVFGIKKCHQLCILGQAEKPIAQKLQLLDLEVSYIELYNQDILSLLFESIFFVQNL
                     MLLLAEKYGYTELNYLMMKNALKISSDIIYSK"
     gene            7576..8871
                     /locus_tag="VD694_05665"
     CDS             7576..8871
                     /locus_tag="VD694_05665"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW12230.1"
                     /translation="MSSLHSLQSINASIPKPGALLQNDSAILSDPNLALEVFASGLTL
                     PTNMAFLDSGEVLVLEKENGTVRKIVNGMPLSKPLLDLNVSTFDTRGMLGLVVVTNQT
                     INKQYVFLYYTEAKDGKYDGQDKCTSPSKCMPDQTNGNRLSRYELPENGSKLINQKVI
                     FSWPPFSGASHNGGEIVIGPDNNLYVLIGDGDNRHTIFSNSNESTAIDGRGGVLVFDQ
                     SGKSAFPQGIIGDKDPLNKYFAYGIRNGFGLDFDPITGKLWDTENGPGYGDEINMVEP
                     GFNSGHTKILGFWKQFNRTYGELVMEPPINDLIDFWGKGKYSAPEFAWNQTIAPTAIK
                     FLNSDKYGKKYENDLFVGTVKPNGDLYHFDLNPKRSELDLQGPLEDKIANNYGELSSV
                     TFGKNFGVISDITVGPDGYLYIVSHTRGEIYRIIPIQQR"
     gene            complement(8911..10911)
                     /locus_tag="VD694_05670"
     CDS             complement(8911..10911)
                     /locus_tag="VD694_05670"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HXW12231.1"
                     /translation="MNKQEFVELINSTKFLLGIVLILAAFTHLWNASQFPGTHIDEGH
                     YIRRALHVLSGLGPQENSSNYDHPFMGQIVLAQLFGIIGYPNSLNPSTSVESIEALYA
                     VPRIFMGIFSIIDTFLVFMIGRYCYNKNVGLVASLLFAVMPMSWQLRRVVLDSIQLPF
                     VLSSILLAFLIKEHLTNYGHKKITLIILLSGIFLGLAIFTKIPAIFIIPFVSYLIIKY
                     SRNKIKYSNEDHKQKNYTLKNLGIWFIPVILIPLIWPAYAIYLGDFDKWVDGVAHQAA
                     GRGSRLSGLWESFIYIDPLLLSLAVGGTIFSLIRKDFFPILWIAPFVLFVLVNQWFLS
                     FHWNLLLPAFCIYGGAFLVELPNSIKSIKLRKYVHVTVIGIVSAFGFVSIILLISVNI
                     STGIFQASATTVQYLNSQLADNKTVDQYSIISSPTYTWLFKYPFGINNTLNFRDSASI
                     KTPNIILVIDGSFQGFIGPYEKILHPNVTQILDDNNLKSRVVGRTLGTWIRIDLGTEK
                     MICGMKLWWYKGDSRSYNFTLSASNDSAIFTEIASYHSNGKTVSEEYGSNNKHARYVG
                     IHFNGNTDNNIGSISEIALYGINNVSNSGECSKLEPKSILLSNDSYIESGVDKRIEQI
                     AQIIPQTKVISKISLPKEYDPHVYPFTNMKYTGMPSIEIRAK"
     gene            11540..11725
                     /locus_tag="VD694_05675"
     CDS             11540..11725
                     /locus_tag="VD694_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12232.1"
                     /translation="MTLREIDDTVEKVKLKEKIFSIRKIPVSLGYIALIIFAIWFVTG
                     LVMDYYSHIGADIPISP"
     gene            complement(11888..12019)
                     /locus_tag="VD694_05680"
     CDS             complement(11888..12019)
                     /locus_tag="VD694_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12233.1"
                     /translation="MSELLNSVIIAIVGTLVVLIGLKLKEEKKEIGYYKSLLKWARI"
     gene            complement(12618..>12835)
                     /locus_tag="VD694_05685"
     CDS             complement(12618..>12835)
                     /locus_tag="VD694_05685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12234.1"
                     /translation="STLTNYRSLALTFLSSPLTNPAELSHVFLSGLHIEPPLKQCAVL
                     GLSASTVFQIATAIVAPTSISDADKQK"
BASE COUNT         4328 a         2217 c         2277 g         4013 t
ORIGIN      
        1 taccaaatct ttacctgcta tttctctttg tatatctagc tgatcgttgt tgctcctaga
       61 ttcattgtag ctgtaggatt ctgatcttgc agcaccaaaa gaatgtgttg ggaagaatat
      121 gatgatggct acaagcaatg acaatataac acacaataaa acattgccat caatacgggc
      181 caagcatttt cgatttgaca taaggataga cttaatatat aatttacttt tcgaactgaa
      241 gaataaaact tcaaaaacaa tctaaatgca ggaactagtt acagtgcatc aggtactcta
      301 atgaatgaag taacaaggaa gcaaatcaaa aatatgctaa tataggtcac gacagatggc
      361 tcatcaccac aaacagtcag acatcgatag aaaaggaaac tatgaaattc aactgaccgc
      421 gctgcccaat acagatggag atcatgatat tcggacctac tttacagtgg cagcaacctc
      481 caaatacaaa tcgtcggaat caccaatagc tacgttacca gcacaagtgg taccggcgct
      541 actctaactg ccgtattatc tactgagact tccttaagtc taaaagttaa tgaaaaggac
      601 aagatgactg gtgacgcaga atataccgtt tcagggaagt tagttgactc tgtatcgaag
      661 aagccgattg ctggtaaaga aatatccgtg acaacggacg gtgacttacc gaaaggcacc
      721 gataccacga agagtaaggt gaatttgagg tcgaaccaag tgcaccccac agcccaggaa
      781 aatatgatat caatgcacaa tttgatggag acttacaata caaattatct gactcatcag
      841 taaagattac tgttgaagaa accaaagtaa gtagtcagaa atccacagta acgacaaacc
      901 aaccttattc agatgaaaca cagacagatg aaacacagac agatgaaaca cagacagacc
      961 aacatcagtc agaagtacca gaagaattac ctgaagaatt acctgaagag gaacctgaag
     1021 agcggtagac aatcatagtc agaaacaatc ctaatgagga atcttggata gcccggctcg
     1081 gtttgcaacg gcccaatatt ttaattttta tctttccaat tataataaaa aagcagtcta
     1141 tggtagccaa gccttataaa gaaaagctta aaagcacttc taaacaaatt tctacttaca
     1201 ttctcatgtt aaatccggag agcaaagcct taacagacga ctgcgattct aaaaaatcta
     1261 acaagatttc agtggttttg ttgacacaag acccgctcaa acccatgttt caatctcctc
     1321 ataaagtaat gtcctcaata ccaagagagc tctccaagga aataattgtc gttcactata
     1381 aaagcagaaa cagaactggt gattttgatg aagccttaga atcaaccaag ggcgatgctc
     1441 attatccaca tgaaaaaata ctccatgtaa gggttgaagg cgaatttgcc tcaggcgtaa
     1501 tgaaaggtat agaattgtca gcgggcaaat atatactggt catggatgca gatcttccat
     1561 attcaaggga cattattcct gaacttgtat ctgcattgat agcaaatcca aatttcataa
     1621 ttgttgcttc aagatttgtc aaagatgctc atgttcaaca aatacctttt atacaaaacg
     1681 ctgttggcaa gacagctaga ataattgcca gatatggatt gaaaatcaaa aacgttaaag
     1741 atccaacatc ggcgtgcttt gccttttcac gtgaaatagt taaagacata aaatttgaag
     1801 gaaaaggtaa ggaagcactg ctggaaattc ttgtcaagat aaattccaat aaaaataata
     1861 ataatgtttc tgtaaaagag attccaatca aacaacacaa tactgttatt acaagaaaac
     1921 tagaccgaga tagaattttg aattactcaa aggatgtatg gcaattatac agatatggta
     1981 taaaatcaaa gccaaataat agtagtgacg tagcaaagcc aaaacgaaaa ttaagcaagt
     2041 cggttatgtt cttatcaaag gctggtagat tctttacagt tggagccagt ggtcttgccg
     2101 taaattatgc ggcatccttt ttgttaacaa gtttaatacc aaacatctgg tatattcatg
     2161 ctacactgtt tggtataatc ctttcaataa catcaaactt tattttgaac aaagtttgga
     2221 catttgagga taggaatttt tcaccaaggc atttcctcag gcaatatgta ctcttttttg
     2281 cactctgtac tttaggtgct gtcattcaat tatcactggt atttgctttt gtggagtatg
     2341 ctgatattca gtacgctgta tcgctattat tggccgtctg tattgcttca cttagtaact
     2401 ttttgctcaa caagaaaata acctttggag aaaagatctg ggaataaatt tttacattcc
     2461 catacttata gctgaaattt ctgtattaac tttggatatc tcaggttctt gtagttggat
     2521 ttaaccagag aaatttcaga tacaggaaaa ctgaaatctt tgtccagaca cttgtattgt
     2581 ttaaagatat cttccataac agaatcaatt ttaaagttgt cttttttgtt gtaatagcct
     2641 agcgtaattc atacattcag aaattttctt ctaaagtttt ttcctaaaat agattttata
     2701 tttttgttat tcaaaagata ttttgttaaa cttgacatag tttgaaaatt caatattgtg
     2761 agagcaatca cctatcgcta ttacagttcc attacccagt ccatcaattg gttttaaggt
     2821 cctgttacca gaatatgttg atccaggccg tattgaatca atttttatgg ttattgctac
     2881 tttacgagat tttgtaaata attgtatttt tcttttaatt gcctgataat catgcttact
     2941 tttggaccaa agccgaacaa tgttgcatgg agatttttat tttgatagaa atgcttgttg
     3001 ttctgcttta ggcgtctgca tattttgatg aaaggttttt tctgatcttc acctagaaaa
     3061 gcaaccaggg aaattttttc aatttttgtc tgctgttcat tgctaacttt tgaacgattt
     3121 atagtgccta tagtgaagcg atatttctga atatcaaatc cagtttcatg cttccaaccc
     3181 gtttcactgt attttaacaa atcctaatta agaagacctc aagctagtct aaaataaatt
     3241 tcgttgtttt ggatgtctag acaaatttcg gctaatttct tattttgtat atgaaccatt
     3301 aactaccaaa agaaagttga catgccttga ttcgcctcat cgtatggtgt acacctgttt
     3361 tttaatcatg aaattttatt ctatgatatt tgtctgcagc aatgagaaga aaaatcactg
     3421 agtgttttta tactcactgt gacgtttttt atcactccag aaactataga tagagtaata
     3481 aatgggtatc cagtaagtta tacgaaaaat tttatgcaga actttctcat ttttcagaaa
     3541 aattttattt atttggcctt gactttgatt ttaggctccg tatttctcat ttttaatttt
     3601 caaacaacat attctcaaat ccctgaagta agctatcttg acgtaaatga tacaagctca
     3661 gtttcaaaat tcagcgtcgc agcatggttt aagacgtcag ctaattacga ctctgacgca
     3721 tttattgtca acaagccagg ctcttcgaac aatttgaatt atggaatctg gatgacaagt
     3781 gacgaaaagt tacgaggagg atttgaaacc tcaggcggca gtcctatgta tgcaacttcg
     3841 ccgcagtcat atagcgatgg aatgtggcat tacgtcacgg taacctatga tggctctgat
     3901 atcattctct atgtagatgg cgttcaggta gctacaaaaa agacttcagg atcacctgat
     3961 atgggagatg aaccagttag agttggagct gattccacga cacttggtga ctactttatt
     4021 ggtaatgttg atgagataag agtttggagt gttgcattaa cgcctactca agttagtgat
     4081 gcctaccatg acaatgctga cacaaaatat caagaattgt atcttgactt ttcagagccc
     4141 attgaaagcc ttaatgttac ctctgttgct cttaatcaaa ccgctctcaa tcaaacagat
     4201 attcttttga ctaatgatac tgctatgact aatgatacct taactcaagt aaacgttact
     4261 ttaccaaatc aaactggtat tttaccccca gcaagtatag agaatgatac tggaatagat
     4321 aacgagactt cgacgaacat tccacttcta caagaaatac ctgatgtaaa cgaaacaggt
     4381 attaccaatg aaacgcagga taatcaatcc accactctac ctccagaaga gaacaattct
     4441 ccagaggcat ttgatcaaaa catttctgta gatatggatg gtcaggttga tattacattc
     4501 cgtgctaccg atgaagacaa cgatccactt aaatttgata taacagcaga tccattgcaa
     4561 ggtactctaa ccaatcttga tggtgaaaag ggaacagcta catatgttcc tcaacaagga
     4621 tattctggaa gtgaccaatt ccaattcaga gtaatagatg ataaaggatt tgaaagcaat
     4681 gtagctcaag tagatataac tgtcgaggaa agtcaatcca atgaaactga agctagtgat
     4741 ttaacggaaa ctgaaggaga tactactaat gagactatgc ctgaacagtc taccggtact
     4801 ggtgctttcg aacaaactaa tcaacctccc aacgctgatg caggaaatga tataagtgca
     4861 gaggtaaaca ctcaagtaga acttgatggc agccagagta ccgacgaaga tggccagatt
     4921 gtttcataca agtgggaaca aacaggtggt cctgaaatta atcttgaaca atctaacgaa
     4981 caaacagcta gctttgatgt gccagagtca gctgctgatt caaaacttac attcaaacta
     5041 acagttgtcg atgataaaga cgcttctgac tctgacgatg ctagtgtaca agttaaaact
     5101 gtagaaaatc aacctccaaa ggctgatgcc ggaggagata aaaatgcaga agtaaatact
     5161 gaaggaaaac tagatggaag caagagctct gacgaggatg gagagattgt ttcatacaag
     5221 tgggaacaaa cagacggtcc taaagttgac cttaaaaatg ctgatgaaca aacagctagc
     5281 tttgatgtgc cagagtcagc tgctgattca aagcttaaat tcaaactaac agttgtcgat
     5341 gataaagatg cctcagactc tgacaacact actgtagaaa tccaaagtgt tcctcaagag
     5401 tccgatgaag aatctaattc caacggtaaa tcagattaat ttttttgcta atctctgaat
     5461 tctgatgaga gcttatgcct ttcatatcta ttcaatatgc tttattgtgc aactattgaa
     5521 tactgaatat tggatacttg taccatacat aacaccaaag ctcaagagta ttttaacaat
     5581 ggctgagaac cttcgctttg aaaatcggac caagttgctt gttactatta taataataat
     5641 tttgtagatc aaaaggtatt tcgcattgct cttgaatgag taatatctta tacatacagt
     5701 agaagtgccg gctccaccta cgaaatacac atcatttaga ccttttaata tttccagaag
     5761 aaagaccgtc ttagatgacc atggtggacc actcaacaat atcaatacct catgttttga
     5821 aactgtagat ctcaacagta acttcttgat atcagaatac ccaacttgtt tgagaagaat
     5881 atatctttga cacttctttg gtcacgataa ccaatttttt taaataaatt attgaacatc
     5941 catccaatca attgttgtaa tagtaagata atattaaatt atatggaaat acatgctatt
     6001 actgcgtgtc agtaacaaaa gcacactcgc ttgatatagt aacataacgg agtatttccc
     6061 aatttgagtt tgtcggacaa gcagtgagcg aaataacctg attatacaga ttacaagaag
     6121 atcttattaa catgttaagg caaaagaggt ggctaaatcg aaattattat tgataaagtc
     6181 taatgaatgc tgcccccgag ttcaattgat ttcgatacaa actcgatcaa aaatactctt
     6241 attttttaat tcaattccaa ataagggacc aataagtact ttttttatat agtgaattac
     6301 ttagagtaaa ttatgtcgga ggaaattttc aaagcattct tcatcattag gtagttcaac
     6361 tctgtatacc catatttttc agctaagaga agcatgagat tttgcacaaa gaagatggat
     6421 tcaaatagta atgagagaat atcttgattg taaagttcga tataagaaac ttccaaatcc
     6481 aatagctgaa gtttttgggc tatgggtttt tcagcttgac ccagtataca aagctgatgg
     6541 catttcttaa ttccaaatac tggcgaatga caaaattctt caagtttgtg tgcgaaagcc
     6601 gtgataccaa aaaattctgt catctttaat gatgtgtaat acgcaagtgg atagaggatg
     6661 ctgttaccaa gtatagatat tgtcacgtca tccagcttat cgatatgtgt tttcgaatct
     6721 aggaattctc gtgacagttt cacgccatta ttatgccagt tatcaaattt ctggggtatt
     6781 tttaaacctg caatctggag acatgtcaat acatttgcgg tgaaagtact aaaacccgct
     6841 aatggaaact ttttgcttct taagtcaagt gcgactattc gtttacaagc ttgggctagc
     6901 ttactatctt ggttcatggt gatcgctatt gtattgactc cagcctctgt agcgcgtcga
     6961 gcaacagcaa tgttggcttt ggttcttccg gtgaccgaaa caaagcaata tgttttgtcg
     7021 tcattgaatc ttgaatttga taagtctgat gcgctgtaac acacacattt atgatctgtg
     7081 acatattcta ccataagacc ggcgacgtac gaatcccccg atcctacaaa aatgtaatta
     7141 tcagaaatct tgtcattttt tattttacct aattcactta tttgcgtatt aaagtcaaat
     7201 ctgagagatt caattgaatt catagttaac tctaactaaa tgaagtatta aagcacaggg
     7261 taagtacgtt cagattttgg aacggcccct aaaaagggac aattactatt atttaatgca
     7321 agactgggtg gatattacgc ttttcttaag ttttacatta gatataagat tccatatctt
     7381 catttcagaa tagtaaaaaa atgtgtgtga ttacggttgc taacgctcat gtgtagcttt
     7441 ttgaattcag aatgtttaat aattcaatta tatgcttttg acaatattat ggtcaaatat
     7501 ttttcaaaaa tattattagt aaatttgacc tactggtcgt ctgtattcct tattagttta
     7561 cttttaatta attcaatgtc aagtttacat agtctacagt cgataaacgc ctcgattcca
     7621 aagcctggcg ccttattaca aaatgactct gcaatccttt ccgacccaaa tctggcgcta
     7681 gaagtttttg ccagcggatt aacactccct actaatatgg cttttttaga ttcaggcgag
     7741 gtcttggtac tagaaaaaga gaatgggaca gtaagaaaaa tagttaatgg tatgcctctt
     7801 agtaaaccct tactagactt gaacgtttct acttttgata ctcgaggaat gttaggactt
     7861 gtagtagtta caaatcaaac tataaacaaa caatatgttt tcctttatta tacggaggct
     7921 aaagatggca aatacgacgg tcaagataag tgtactagcc ctagtaagtg tatgccagat
     7981 caaacgaatg ggaacagatt aagcagatat gaattacccg aaaatggctc aaagttaata
     8041 aatcaaaaag tcatatttag ttggccacct tttagcgggg cttctcacaa tggaggtgag
     8101 atagttatag ggccggataa caatctatat gtgttaatag gcgatgggga taatagacat
     8161 actatattca gcaattcaaa tgagtccact gctattgatg ggagaggagg agtattggtg
     8221 ttcgatcaaa gcggtaaatc ggcgtttccc caaggaatca ttggcgataa agacccatta
     8281 aacaaatatt ttgcttatgg aattagaaac ggttttggtc ttgattttga tcctattact
     8341 ggaaagctat gggatacaga aaatggtcct ggttatggtg acgaaatcaa tatggtagaa
     8401 cctggtttca atagtggcca tacaaaaata ctgggatttt ggaaacagtt taaccgtacg
     8461 tatggtgaat tagtaatgga accaccaata aatgatttaa tagatttctg gggtaaagga
     8521 aaatacagtg caccagaatt tgcatggaat caaactatag caccaacggc aataaagttt
     8581 ttaaattcgg acaaatatgg aaaaaaatat gaaaatgatc tcttcgttgg gacagtgaag
     8641 ccaaatggag atttatatca ttttgattta aatccaaaga gatcagaatt ggatttgcag
     8701 gggccactag aggataaaat agcaaacaat tatggtgaat tatcaagtgt tacttttggt
     8761 aaaaattttg gagttatttc tgatataacg gtgggaccag atggatattt atatatagtg
     8821 tcccacactc gaggggaaat ttatagaatt attcctattc aacaacggta actcatactc
     8881 tgaagttaag tttattatta tacctggaaa ttactttgct cttatttcta tagaaggcat
     8941 accagtgtat ttcatatttg taaatgggta gacatgagga tcatattcct tgggtaaact
     9001 gatctttgat ataaccttgg tttgtggtat aatttgggca atttgttcaa ttcttttatc
     9061 gactccagat tcgatatacg aatcattact taatagtatg ctttttggtt ctaatttaga
     9121 acattcgcct gaattcgata cgttattgat gccatacaaa gctatctcac tgatacttcc
     9181 gatattatta tctgtatttc cattgaaatg aataccgaca tatcgtgcat gtttattgtt
     9241 ggacccatat tcttctgata ctgttttgcc attactatga tatgatgcaa tctccgtaaa
     9301 gatagcgcta tcattagatg ctgataacgt aaaattatat gatctgctgt ctcccttata
     9361 ccaccataac ttcataccgc agatcatttt ttcggtacct aaatctatcc taatccaagt
     9421 accaagtgtt cttccgacaa ctctactttt tagattatta tcatcaagaa tttgagttac
     9481 gttaggatga agaatttttt catagggtcc gataaaaccc tggaatgaac catcaatcac
     9541 taatatgatg tttggagttt taatacttgc actatcccga aaatttaatg tgttatttat
     9601 tccaaaagga tatttgaaca accaagtata agtcggacta gaaataatcg aatattgatc
     9661 aacagttttg ttatcagcca attgagaatt caaatattgt actgttgttg cggatgcctg
     9721 gaatatgccg gttgatatat taactgatat aagcaaaatg attgatacga aaccaaatgc
     9781 tgatacgatc ccaattacag tcacatgtac atatttcctt aattttatgg actttatgct
     9841 atttggtaat tctaccaaaa atgctccccc ataaatacaa aatgcaggaa gcagcaagtt
     9901 ccaatgaaat gataagaacc attgattaac aagtacgaat aatacaaatg gtgcgatcca
     9961 taatattgga aaaaaatctt ttcttattaa tgaaaatatc gtgcctccga cagctagaga
    10021 tagaagcaaa ggatcaatgt atatgaacga ttcccacagc ccggacaacc ttgatcctct
    10081 tccggcagct tgatgtgcta caccatcgac ccatttgtcg aaatctccaa gatatatggc
    10141 ataagcaggc caaattagtg gaattaaaat gactggaata aaccaaattc caaggttttt
    10201 taaagtgtaa tttttttgtt tgtggtcttc attagagtac ttaattttat ttcttgaata
    10261 cttgatgatt agatatgaca caaatggtat aataaaaatt gccggaatct ttgtaaatat
    10321 agccaaaccc aaaaagattc ccgataacaa aataattaaa gtaattttct tatgtccata
    10381 atttgtaaga tgttctttta ttagaaatgc cagcagtatt gaagataata cgaatggaag
    10441 ctgaatggaa tctaatacca ctctgcgtaa ttgccaagac ataggcataa ctgcaaataa
    10501 taacgatgcg acaagaccaa cattcttgtt ataacaataa cgaccgatca taaaaacaag
    10561 aaatgtatca attattgaaa atattcccat gaatattcta gggacagcat atagcgcttc
    10621 tattgactct acagatgttg atggatttag tgaatttgga taaccaatta ttccaaataa
    10681 ttgagccagg actatctgtc ccataaatgg atgatcataa ttactggagt tttcctgagg
    10741 acctagtcca ctcaaaacat gaagtgcacg ccttatgtaa tgaccttcat ctatatgtgt
    10801 tcctggaaat tgtgaagcat tccatagatg cgtaaaagca gctaatatca acactatacc
    10861 cagcagaaat tttgttgaat tgatcaattc aacaaattcc tgtttattca tgttagtttt
    10921 tctatcttga aatcatttca aaatatatat aattattact aatgaactta gtaaggctat
    10981 cacagtacat tgccaattag ggctacttgt acattgttca tatagttcgc tgaacttgga
    11041 gataatggtt ttgaattata gttaaatgtt caagaataaa ttcctcaatt tctttgaaca
    11101 tgtgctttaa attctctgga cagaagagaa tcagggtcat gaacctgaac aaacagaaga
    11161 taaagagtga gataaaccaa tcaagaaaaa ataaattaac tgcctgtaga gattttatac
    11221 ttgggttttg ttcctctgcc ttatttctgt atttgatata tatttttaat tttaaatttt
    11281 aaatggtgat agataaaaga gtgatacaat atagactagt acagcaattg ccagggtaat
    11341 accgtttcac cgtttcacag acaacaacaa caaaaagaga taatcacaac aaagttggtc
    11401 ataacaatgg taatgatagc aatagtaaag attactgttt tattcttatg gatctaagat
    11461 ctaatctgaa tctaaagggt atattgatat agagactaac tccagaggaa ataatactac
    11521 ggtacctgtc tatgaaagtg tgacgttacg ggaaatagat gatactgtag aaaaggtcaa
    11581 acttaaagaa aaaattttta gcataagaaa aatcccagtt tcgttgggct atattgctct
    11641 tattatattt gcaatatggt ttgtaacagg ccttgtcatg gactattatt ctcatatagg
    11701 tgcagatatt ccgatatcac cttgattttt aattaatatt atatcctttc aaactaagcc
    11761 ttaacgcatc caacaaatca tcataagaat cttgttcatt ttagactatc atataattgt
    11821 gcgagcgttt catttttctg taacattttt cagataaaat gattttgtgg aaccaaatgt
    11881 caaattctca gattcgggcc cattttaata atgatttata gtacccgatt tccttctttt
    11941 cctcttttag tttaagccca atcagaacca ctaaagttcc aacaattgcg attattacag
    12001 agttcaacag ttcactcatt tttctttctg aatcaccttt tcatataaaa caagaaatcg
    12061 attttttggt tctgaacctt cacttttgat tctgttcatt aagatgctac atccatccaa
    12121 atcaagatta taacggttat gcataaaacg aaaagttgaa acatagagtc gaataatact
    12181 atcgaaaggt gaggaacaaa tttatgaatc taatctcatg atttttgcgt ttatagtgat
    12241 taaatagaaa tcttccagag atccggtatg cgggtctcca ggattagaca tttaatgttt
    12301 ttgattttat tttatcactc aattccaaat gaaagcacaa atcacataga ggagagggac
    12361 ccgaggtttt tcataatttc tgcaaagttt actttatttt atttaatatt gattcctttc
    12421 aaacttagcc ttaatgcaac tagcaaatca tcataacttg tttgttcttt atctaatgaa
    12481 taatctatgg gcagccttcc taaagattta attataacct aatcaaaaaa aaaaccaaac
    12541 ttatccaata atcagttatc gactaatatg cgaagttagt atcatacttt tagattcatg
    12601 gttgagagat gaaattgtta cttctgtttg tcggcgtcac taatgctcgt tggcgcaacg
    12661 atcgcagttg caatttgaaa tacagttgaa gcagacaagc ctagaactgc acattgcttc
    12721 aatggcggtt ctatatgtag ccctgataag aaaacatgtg aaagctctgc gggattcgtc
    12781 aaaggggaag ataagaaggt aagtgcaaga gaacggtaat tggttaaagt agaat
//
LOCUS       DASPFX010000260         5191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1904198, whole genome shotgun sequence.
ACCESSION   DASPFX010000260 DASPFX010000000
VERSION     DASPFX010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1904198"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(283..504)
                     /locus_tag="VD694_05690"
     CDS             complement(283..504)
                     /locus_tag="VD694_05690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12235.1"
                     /translation="MCTIDEQCVFPSLGAPKYSDKLDVGRAALLMVVIVVVVYTRGLR
                     GYGGLVIGGIVGLDIFFLAFISGNINGHQ"
     gene            881..1048
                     /locus_tag="VD694_05695"
     CDS             881..1048
                     /locus_tag="VD694_05695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12236.1"
                     /translation="MAILVQEITRRQNKFWNKVIEYVTFTMAIAMVAFAAWQFWLNTS
                     QLLPDNMKISR"
     gene            1232..1813
                     /locus_tag="VD694_05700"
     CDS             1232..1813
                     /locus_tag="VD694_05700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12237.1"
                     /translation="MLAIGLDNTIPHIALGQSAANFTSALNKTQEWTSQRDNVKILFT
                     YQPERPIIDTFTKLEFNVINLTSNENLKNFDARVVVTNGQRLFKFENITVPDGDFSVE
                     YIFPDDGTHQVLTRIDKGIFTRVLASFNVFVPHQAPPSILNPFPTSPGSESGDDTGIL
                     LSKILAIVLPIAGVLGLIFMIKMGKAKSRETIK"
     gene            complement(1896..4376)
                     /locus_tag="VD694_05705"
     CDS             complement(1896..4376)
                     /locus_tag="VD694_05705"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HXW12238.1"
                     /translation="MSFEIKGKLVDPTSPSKLLSNYTIKAFDRDPFPGSLDDDELGKA
                     VTLDDGSFRIKFKPSDFREVLDPSDVELYFKIYDLDGNLIHTTDLVTSPYIPYTDTAE
                     VNECEAVVIGSGFGGTITSLSLVNKYVDDANNNPSIKKKIVILERGQWWVSHELPLSP
                     SSHELNEKPKPKTGIREFLESNNLPYNTWPYPDNINGLSQMVNNLHNSNNRRGLLNYR
                     ISPKVHTLTASGVGGGSLIYTNVTEEPHQSVIDAWDTNLNTGINYANLEPFFEMARGF
                     LGVNKIVTNSSMGDVKLPRSKAFQDAAKKMKEELPPGTITNKETFDPNSELNEDVFAA
                     DLSITDIPYRKDDYSLFFKKNPIYEQVPTYQNVKNLIIGKPELQEKLALFLRKYFEEQ
                     NACQRQGRCAIGCIPGARHTNNKKLFDYLKDPKKKEHFQVRALAEVYDIEPLTASTRK
                     YKIHYRDYGARDKKEISFSWPAGSPSFKLEATLFKYIPEGRAKTISCNTLILAAGALG
                     STEILLKSVSTTRTTGERLNLSTKLGKGYSTNGDLLGIVTPTKDNIRATRGPMVTSAM
                     RFKEGSNFIYTIEDTGIPKIFAGLSNLLPQANLFRELLVSVGSESINNLVDILTRHLS
                     GISLRSESSIVISERDLDKTLILSGMGTDTSDGEIKLMDNWKNSTNRNMNEWNVVNIE
                     FDINKLAPLIDKIRSSMKRIAKEIGEKGSASLSTPLWDPNPSNINRNITAVVHNLGGC
                     SIGKDRDHGVVNNFGKVYRGNGASLTDTYDDLYVVDGAIVPTSLGVNPSLTISALAFR
                     IAKEIVQSMGFLPVEEVPIGLEKVYFSK"
     gene            4408..4671
                     /locus_tag="VD694_05710"
     CDS             4408..4671
                     /locus_tag="VD694_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12239.1"
                     /translation="MLIIDKTLISSPFAGNVLKQLPKVQPQGLPFPTSNNAIEEYWRQ
                     GKYDLLVSRYYPRFEGFKHVIANYYRTRRFKPDIAKYLSRNMS"
BASE COUNT         1629 a         1000 c          952 g         1610 t
ORIGIN      
        1 aaacttggag aataccaaga gagctgatta aagatttgaa gcgataccta cttaaaacaa
       61 tatgtatgtt cactaaagct tgcgagagtc tggcgaagta taaaattttc agacaagtag
      121 aggtctcata gtgtgacaat aagcatcact taaaattgtc aacaaatttt tatctaacaa
      181 gtagagcaat aattgacgtc ccaataaatg tagcagtcaa gtacaaccat aaattatcaa
      241 gaaaccctga agtgagggta ggagctagtg aacgtgcagg attcattgat gtccattgat
      301 gtttccagat ataaatgcaa ggaagaatat gtcaagcccc actattccgc caatgacaag
      361 tccgccatat cctcttaatc ctcttgtgta aaccactacc actattacta ccatcaataa
      421 tgcagcacgt cccacgtcaa gcttgtcgct atatttaggt gcaccaagac tggggaacac
      481 acattgttca tctatagtac acacaacctc ttacagcagt tttagaaaat ttaactaaac
      541 tggtcaaaga taatgtgtat atttaggaac gatcgtacag attagaggat tcctatagcc
      601 gtagtgcctc aagacagtcc ttctatgaaa gccaggaaga agaagatgac tagcagaata
      661 atgacaatga ttttgtaacc agggaccagg aaacccaaaa ttctacaatt tgaccacctc
      721 gctattgaat ctatgatgat gtattgctag acaattcttt caacatgtgg aattctcaag
      781 aggaagacca atagcgactg cacagtagtg cagtgtaggc agcaacccta agtaagacaa
      841 agcagtatat accactaagg agggatggta aaaaaagaaa atggcaatat tagtgcaaga
      901 aataactaga agacaaaaca aattctggaa caaagtaatc gaatacgtga cattcactat
      961 ggccatcgca atggtcgcat ttgcagcttg gcagttttgg ctcaatactt cgcaactact
     1021 ccctgacaat atgaaaataa gcagatgacg catatgctaa cagcagcagt gtttgcagta
     1081 gcactgctcc taagtgttat cgcttaacaa cggcagtgca aacagtaaat tgaagcactc
     1141 gaacaacttt ttatttgcgt atattcgagt atgcactagg ttacgtagct cggtcggtat
     1201 ggctataact ttgcttttat tattctttac tatgttggct ataggattag acaataccat
     1261 accacatatt gctttaggcc agtcagctgc gaatttcact tcagctctta ataaaactca
     1321 ggaatggaca agccaaagag ataatgtaaa aattctgttt acatatcagc cggaaagacc
     1381 aatcattgat acattcacta aactagaatt taacgttatt aatttaacta gcaatgaaaa
     1441 tctcaaaaac tttgacgcaa gggtcgtggt aactaacggc caaagattgt tcaaatttga
     1501 gaatataaca gtacctgacg gagatttttc agtcgaatat atctttcctg acgacggtac
     1561 acatcaggtc ttgacaagaa tagacaaggg aatatttacc cgagtattag catctttcaa
     1621 tgtttttgtt ccacatcaag caccgcccag cattctaaat ccgtttccta cttctcctgg
     1681 aagtgaatcg ggtgacgaca ctggtatact cttgagcaag attttagcaa tagtcttacc
     1741 tatagctggc gtacttggct tgatattcat gatcaaaatg ggaaaagcaa aatcacgaga
     1801 gaccattaag tgatcctaat ggaacgacag atattgttgt aggcacggtc tctccataga
     1861 tgggtctaag taatgacgaa tatcatggac acgtactact tagagaagta taccttctcc
     1921 agcccaatag gcacttcttc tactggaaga aaccccattg actgtactat ttcttttgca
     1981 attctaaatg ctaatgcgga tatagttaat gatgggttta cgcctaatga agttgggaca
     2041 attgctccat cgacaacata aagatcatcg tatgtatctg tcaacgaagc tccattgcct
     2101 ctgtaaacct ttccaaaatt gtttaccact ccatgatctc tgtcctttcc aatagaacaa
     2161 ccaccaagat tatggactac tgcagttatg tttctattta tattacttgg attcggatcc
     2221 caaagaggtg tcgagaggct tgctgaacct ttctcaccta tttcttttgc aatgcgtttc
     2281 atggatgatc gtattttatc gattagcggt gccaacttat tgatgtcgaa ttcgatattt
     2341 accacattcc attcattcat atttctattt gtgctatttt tccagttgtc catcaattta
     2401 atttctccat ctgaagtatc tgttcccatt ccagaaagta ttagggtctt gtcgagatcc
     2461 ctttcagaaa ttacaattga actttccgat ctcaatgata ttcctgaaag gtgtctagtt
     2521 agaatgtcca ccaaattatt aattgattcg gagcctacag atacaagtaa ttctctaaac
     2581 aagttggcct gtggtaagag gttagataaa cctgcaaata tttttggaat accagtatcc
     2641 tcaattgtat atatgaaatt agagccttct ttgaatctca tagctgaagt taccataggc
     2701 cctcttgttg cacggatatt gtccttagtt ggagtaacga ttcccaacaa atcaccattt
     2761 gtcgaatatc ctttgcctag tttagtgctg agattaagcc tctccccagt agtgcgtgtg
     2821 gtagaaactg attttagtaa gatttccgtg cttcctagag ccccagctgc aagaatcaat
     2881 gtattacaac tgatagtttt tgctcttcct tctgggatat acttgaacaa tgtggcttca
     2941 agcttaaatg atggagaacc cgcaggccaa ctaaaagata tttctttttt atctctagca
     3001 ccataatctc tatagtgtat tttatatttg cgagtagatg cagtcagtgg ctcaatatca
     3061 tagacctcag ccagcgctct aacttgaaag tgttctttct ttttaggatc ctttaggtaa
     3121 tcaaataatt tcttgttatt agtatgacgc gcgcctggga tacaaccaat agcacatctg
     3181 ccttgtcgtt gacatgcgtt ttgttcttca aaatattttc tcaaaaatag agctagtttc
     3241 tcttgtaact caggttttcc aattatcaga ttctttacat tctgatatgt cggaacctgc
     3301 tcgtaaattg gatttttctt aaaaaataag gaatagtcat cctttctgta tggtatgtca
     3361 gttatcgata aatcagccgc aaaaacgtct tcgtttaatt ctgagtttgg atcaaaagtt
     3421 tctttgtttg ttatagtccc tgggggtaat tcttctttca ttttcttagc agcatcttga
     3481 aatgctttag acctcggaag ttttacatcc cccatagacg aattagtaac gatcttgttt
     3541 actccaagaa atccacgagc catttcaaag aatggttcaa gatttgcata gtttattcct
     3601 gtattcagat tggtatccca tgcatcgata acgctttgat gtggctcttc cgtaacattg
     3661 gtatatatta atgaccctcc gccaactccg ctggctgtta gcgtatggac tttgggagag
     3721 attctataat ttaataatcc tcgtctatta ttgctgttat gaagattgtt taccatttgg
     3781 gaaagaccat ttatgttatc agggtatggc catgtattat atggtaaatt gttagattcc
     3841 agaaattctc ttatacctgt ttttggtttt ggtttttcat tcaattcatg agagctcggg
     3901 ctcaaaggca attcatggct gacccaccat tgccctcttt ctagaatcac tattttcttc
     3961 ttaatgcttg gattattatt tgcatcatca acgtatttgt ttaccaaaga taaagaggta
     4021 attgtgcctc cgaaacctga acctatgact accgcttcac actcgttcac ttctgccgta
     4081 tctgtatatg gaatataagg ggaagttact aggtcagtag tatgtattaa attcccatcc
     4141 aagtcataga ttttaaaata aagttcaaca tcgctaggat ctaaaacttc tcgaaaatcc
     4201 gatggtttaa atttgattct aaaagagccg tcgtctagtg taacagcttt tcctaattca
     4261 tcatcgtcta gtgatcctgg aaagggatcc cgatcaaatg cctttattgt atagtttgat
     4321 aatagttttg acggtgatgt agggtctaca agttttcctt ttatttcaaa ggacataatt
     4381 tataactatg acgcttgaat aaaaatattg ctaatcatag acaaaacgct catatcatca
     4441 ccatttgcag gaaatgtgct taaacaatta cccaaagttc aaccccaggg actaccattt
     4501 ccaacatcca acaatgctat agaagaatac tggagacagg gaaaatatga tcttcttgta
     4561 tcaagatact atccaaggtt tgaaggcttc aagcatgtca tagccaacta ctacagaacg
     4621 agacgtttca aaccagacat agctaaatat ctatctagga atatgagtta gcaaatttat
     4681 gttattgagt ttagcatatt ctatatcttg agatataaac tccaaggatt ttctgtgaat
     4741 aggttctatg gcaatccata gccaagcttg gtcggaacca ctctccagca tagttttgtc
     4801 aatcagaaag taagtgttcg aagagttgaa gttgaagtga atgagagcta tctctatatt
     4861 ggtaattata gacgaagaga ctaaaaaact tggagaatac caagagagct gattaaagat
     4921 ttgaagcgat acccacttaa aacaatatga atgttcacta aagtaatact aaagcttgtg
     4981 agagcctagc gaaggataaa attttcagac aagtaaaggt ctcataatgt gacaataggc
     5041 atcacttaag attgtcaaca aatttttttc taacaagtag agcaataatt gacgtcccaa
     5101 taaatgtagc agtccagtac aattataaat tatcaagaaa cccagaagtg agggtaggag
     5161 ctagtgaacg tgcaggattc attgatgtcc a
//
LOCUS       DASPFX010000261         2958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2017957, whole genome shotgun sequence.
ACCESSION   DASPFX010000261 DASPFX010000000
VERSION     DASPFX010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2958
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2017957"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..1099)
                     /locus_tag="VD694_05715"
     CDS             complement(107..1099)
                     /locus_tag="VD694_05715"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HXW12240.1"
                     /translation="MTSIIGPEIIQRIGNTPLYELTSYSTENIKFYAKLEWYNPFGSV
                     KDRAAYWMIKDAEKKGLLVKNKSIIIEPTSGNTGIALTGIASSMGYKVEIVIPEKVSE
                     ETKRILRNLGATLHETSDDLCPRVGAGTDQSIALATAIAKPRSDVYYMPNQYENDSNY
                     LAHYESTGPEIWEQTNGKVTHFFTGCGTGGTITGTGTFLKEKKENLQVIAIQAQQNHL
                     LQGLRNFEESSMPDLFKRREKVVDRWMTATNQDSFDTVKELLKKEGLFVGPSSGSVMS
                     SMLKFSKEIDKGVIVGIFADDGRKFKSLYKEQNVVAESDYASALSKLPELYIQP"
     gene            complement(1105..1359)
                     /locus_tag="VD694_05720"
     CDS             complement(1105..1359)
                     /locus_tag="VD694_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HXW12241.1"
                     /translation="MTAENGTKESFAKVIDVRGLYCPEPVFRTKIEIEKLGIGDKLKI
                     IADDPESEEDITRWADKTGHNLLSIEKKDNDLEFVIKKTK"
     gene            complement(1449..2213)
                     /gene="cofE"
                     /locus_tag="VD694_05725"
     CDS             complement(1449..2213)
                     /gene="cofE"
                     /locus_tag="VD694_05725"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HXW12242.1"
                     /translation="MDELSNTQIIPILIDDDIRKGDDIAHLIMEAIKERNESLLENDV
                     IVITHKVISKAEGKVADLSTIIPSEDSKKISLNTGKDPRLVELIISQSNEIVKIERDI
                     IIAETKHGFVCANAGIDASNVGKLSNHVVLLPNDPDESARRIRSDIKSRTKINVSVII
                     SDTFGRPFRKGQVNVAIGIAGIDPIVSYIGKTDMYGKILKVTEIAVADELASAAELVM
                     GKSSRIPVAIVRGYNYIPGDSSISKINRLKEDDLFR"
     gene            complement(2244..2894)
                     /gene="serB"
                     /locus_tag="VD694_05730"
     CDS             complement(2244..2894)
                     /gene="serB"
                     /locus_tag="VD694_05730"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HXW12243.1"
                     /translation="MLIIFDVEGVLLNAEYLPVLAQKLGPVKEKEIWDITKQGIRGEI
                     DWEEGLMMRVNALRGTSFEDAKYIADNLEIMPGARKLCYTLKKAGWKMIAISGGFTII
                     TDKLKDELYLDKIYSNELIFKDGKLDGVIINVSSDKSLGVKSIIKEWGIKKEDIVVVV
                     DGANDLKLFDIAGYTVGFCPVDIVKQRADATIEIRDLSNLLSLLEKKFGKTIETQL"
BASE COUNT          849 a          617 c          466 g         1026 t
ORIGIN      
        1 tgttcacgac tatcgataca gacaagccat tactgcggca ggatttggat gtatggctgc
       61 actggatgta gaaaaatggc taagcgaaaa aaaatttcgt aagtaattat ggctggatat
      121 ataattctgg taacttgctc agagcagaag cgtagtcact ttcggctaca acattttgct
      181 ctttatacag actcttgaac tttctaccat cgtcagcaaa aatacctacg ataactcctt
      241 tatcgatttc ctttgaaaac tttagcatcg aggacattac agaaccagaa gatggaccga
      301 cgaacagacc ttcctttttg agaagttctt taactgtatc aaatgaatct tgatttgtcg
      361 cagtcatcca tctatccacc accttttctc tgcgcttaaa gagatctggc atcgatgatt
      421 cctcaaagtt cctcaagccc tgcaataaat ggttctgttg tgcttggatt gctataacct
      481 gcagattctc ttttttctcc ttgagaaagg ttcctgttcc ggtaatagtg ccccctgttc
      541 cacaacctgt aaagaaatgt gtaacttttc catttgtttg ttcccaaatc tcaggaccag
      601 tactttcata atgtgcaaga taattagaat cattttcgta ctgatttggc atataataga
      661 catcagacct tggttttgca attgcagtag caagggctat gctttgatca gttcctgctc
      721 caacccgagg gcaaagatca tctgaagttt catgtagtgt tgctccaagg tttcttagta
      781 ttcttttagt ttcttcactt actttctctg gaataacgat ttcaaccttg tagcccattg
      841 aagatgcaat accagttaat gctattccag tatttccaga ggtaggttca ataataatgc
      901 tcttattctt aacaagtaag cctttttttt cagcgtcttt gatcatccaa tatgctgcgc
      961 gatctttgac agaaccaaac ggattgtacc actctaactt agcataaaat ttaatatttt
     1021 cagttgaata tgaagtaagt tcgtataatg gagtattgcc aatgcgttgt attatttcag
     1081 gtccaattat agatgtcatc tagttcactt tgttttcttt atcacaaatt ctagatcgtt
     1141 atcttttttt tcaattgata acaaattatg accagtttta tctgcccacc ttgtaatgtc
     1201 ctcttctgat tcaggatcat ctgcgataat cttgagtttg tcaccaatac ctaatttttc
     1261 aatctcaatt ttagtcctaa aaacaggttc tggacaatat aatcctctaa catcaataac
     1321 cttagcaaat gattctttag ttccattttc agcagtcata tccatcccta acactattaa
     1381 tcaaggtctt gtttatatta aatgtttata gaagagactg caagcgttag ttgagtttga
     1441 atattaggct atctgaataa atcgtcttct tttaatctgt taatcttgga aattgaagag
     1501 tctccaggga tgtagttata accacggaca attgctacag ggattctcga cgattttccc
     1561 atgacaagtt ccgctgcaga tgctaattcg tcagcaacag caatctctgt aaccttaaga
     1621 atttttccgt acatatcagt ttttccgata taactcacga taggatcaat ccctgcaatg
     1681 ccaattgcta cattgacttg gcccttcctg aaaggcctac caaaggtgtc ggagataatt
     1741 acgctcacat tgattttggt ccttgattta atatcacttc taatccttct agcagattca
     1801 tctggatcat taggcaataa tactacatga tttgataatt tacctacatt gctggcatca
     1861 atacctgcgt tagcacaaac aaaaccatgt ttggtttcag ctataataat atctcgctcg
     1921 attttgacaa tttcgtttga ctgtgaaata ataagttcta ccaatcgagg atccttaccc
     1981 gtattcaatg atatcttctt tgagtcttct gaaggaataa tagttgataa atcagcaact
     2041 ttaccttccg ccttcgatat gactttatgg gttataacaa tcacatcgtt ctctagcaag
     2101 gactcatttc tttctttaat cgcttccatt ataagatgag caatatcatc tccttttcta
     2161 atatcgtcat caatcagaat cggaatgatt tgtgtattag aaagttcatc catattgaac
     2221 aatcaaacaa aggagaattg atttcataac tgtgtctcta tagttttacc aaatttcttt
     2281 tccaaaaggc ttaacaggtt agataggtcc ctaatttcaa tcgtggcatc ggctctttgt
     2341 ttgactatgt cgacaggaca aaagcctaca gtatatcccg caatgtcaaa caattttaaa
     2401 tcattggcac catcaactac taccacaata tcctcctttt ttatgcccca ttctttaatg
     2461 atggatttta cacctagtga tttatctgaa cttacattaa ttattacacc atcaagttta
     2521 ccgtccttga agattaactc atttgagtaa attttatcca agtataactc atctttgagc
     2581 ttgtctgtaa ttattgtgaa tcctcctgaa atcgctatca tcttccaccc agctttctta
     2641 agcgtatagc agagctttct tgcgccaggc ataatttcca aattatcagc aatgtatttt
     2701 gcatcttcaa atgaagtacc tcttagtgca ttaaccctca tcatgagtcc ttcttcccag
     2761 tcaatttctc ctcttattcc ctgttttgtg atatcccaaa tttccttttc cttcactgga
     2821 ccaagctttt gagcaagaac tggaaggtac tctgcattga gaagaacacc ttcaacatca
     2881 aagattatca gcattttaac tgttagtcga gagagttaca acacaatata ttaagtttat
     2941 tcaggttgga tttgtatc
//
LOCUS       DASPFX010000262         3909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1189455, whole genome shotgun sequence.
ACCESSION   DASPFX010000262 DASPFX010000000
VERSION     DASPFX010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1189455"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VD694_05735"
     CDS             <1..305
                     /locus_tag="VD694_05735"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HXW12244.1"
                     /translation="SQFSLTFPGIDYYEKEDLVFVVDKLSTNIQVFDKNGKFLFKFGS
                     KGTENGQFKRPEDLAIDPQGRIFVCDTGNSRIQVFSQSTNTTSTATDVSYNNNNTI"
     gene            complement(1006..>3909)
                     /locus_tag="VD694_05740"
     CDS             complement(1006..>3909)
                     /locus_tag="VD694_05740"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HXW12245.1"
                     /translation="RMLEHILIDGESEEDLTERYPQIPTIPGPSIEINQNDLLIIHSI
                     DENGEQKTQRIEPKEIGSFEYFGDSFRTLGLFGAIIVNPIDKVPAQLDGKVVSVDVNI
                     LDKQYVLFMVGSTFWGQEIDQNHKQRPLWTNPKLGADLNQLVRFHILGAAHQHTFHLH
                     AHRWLDPGTTDIIDTKLIQPKSSHWFIVEAGDRVGPGEWQYHCHVFAHMEAGMMGEFI
                     VGKVGSNTKSIAGPGPSVAGGPSEQQQGPPNFITFDITDEPGQWFRNLGGEVTKYATN
                     SLGIVKPGGSAHFIMSSTNTVHTISSLLWPTGAPNMPFDQMTAYRGGAIVQLEKPGLY
                     VFTCKIHPYMLGGVIADDPRTSALDLGDKLSLSTGVDLDPNNKNGVATALALLKTFFI
                     ANNPSNWVDYSGTNPTWTPKFPGYEENQPVPVRFGEKEGNLNDLIYSTFTTSSLKPGN
                     LPIPEEPIKSGIGEVWIDTQFEKTANKTKSGTATKVNVVDWNVERKVSLPDINMNNPH
                     NMWSDREQEIIYQTQWFDNMLTAFDRETGQLLDNTRVGDAPSHVMTNPANDLLYVTLS
                     GEQGVAELKFNKENSKFEILRIIPLQDAGQYPTHPHAHWITSDGSKMITPNDFTDDVT
                     IYDYNEYATDSLEGEAGKIQSRTSTAAMPIATGMMPDGKTAYVANFLSSTISVVNMET
                     GEVEKEKEINLADEGHVLPIQTPVSPDGKYVVTANTLSGTIAIIDTKTNKIVASLPCD
                     PGCHGVNFGAKEGGGYYAYVSSKFSNRMIVVDADPNNNGNLAEAEIAGSILLTGDYDL
                     IDTPLFETDDKITEYHGMGGQGVYAIPNVYSGWVQQLDLTWDLTPEQRNPLNAIDNYQ
                     QQLEQQQLEQQQLEQQQLEQQQLEQLHQYQYQQQLESVQPEQSNNNDVNIDSLQTRQQ
                     QETTTPESFADKIAKIRQQSANQAIDPKLKEENVNTSLEKVGNIISMLPIPYP"
BASE COUNT         1170 a          668 c          644 g         1427 t
ORIGIN      
        1 caagtcaatt ttctcttaca tttcctggaa ttgattatta tgaaaaagaa gatttggtat
       61 ttgtagtgga taaattgtca accaatatcc aagtatttga taaaaatggc aaattccttt
      121 ttaaatttgg ctctaaaggt actgaaaatg gacaatttaa gaggccagaa gatcttgcga
      181 tagacccgca aggacgaatt tttgtttgtg atacaggcaa ttcaagaatt caagtatttt
      241 cacaatctac taatactact agtactgcta ctgatgtgtc atataataat aataatacca
      301 tatagataag aagaaagtaa aagcataaaa taaaacatta tccttttctg aaatttccaa
      361 agtaggaccg ttgaaataaa aatagttttt aatagcaaat attaaaaatg atgcaacatg
      421 gacaattaat gctggaatat gtaaaattca aagtttctgt atagtactaa attatatcta
      481 aaaatctctt atctattatt atttattaaa taaaatagaa agaaagaaac aaaagagaaa
      541 ctgagaataa tacaattata caatattgta attagtataa cagaataaaa ttcaaagaaa
      601 tatccttttt acaggtaact tgttatcaag aaataaatta gtttaaaaag ctgaacttta
      661 tcaatttttt catttcatat agttacgggt atttctctat cattgctgag ttgtgaatgc
      721 tcaaaataaa gtatattcat ctttgctttt agttagtatt ggttattata taatattaag
      781 aaaaataacc tttgaatccg aaaaagataa aattatgcaa cttagaagag tgaatgatat
      841 ttgaattttt ttatcaaatc atagaaaata tactattttc ttataaaatt ttatagtcta
      901 acatttttag aatgatgatt gacatttaaa ttttaaaaat ggcaaattga tttatttctg
      961 agattatata tcaaaattct tattttgata aaaagaaaaa aaattttatg gatagggaat
     1021 tggcagcatt gaaataatat tacctacttt ctccaaagat gtgtttacat tttcctcttt
     1081 cagttttgga tctattgctt gattagctga ttgttgacgt attttagcta ttttatcggc
     1141 aaaactttct ggagttgttg tttcttgttg ttgacgagtt tgtagtgaat ctatgttaac
     1201 atcattattg ttggattgct caggctgaac tgattctagt tgttgttgat attgatattg
     1261 gtgcaattgc tctagttgtt gttgttctag ttgttgttgt tctagttgtt gttgttctag
     1321 ttgttgttgt tctagttgtt gttgataatt atcaattgcg tttaaaggat ttctttgttc
     1381 aggagttaaa tcccatgtta aatctaattg ctgcacccaa ccagaatata cattgggaat
     1441 tgcatatact ccctgtcctc ccataccatg atactctgtt attttatcat ctgtttcaaa
     1501 caatggcgta tctataagat catagtcacc tgttaacaat atactgcctg caatttcagc
     1561 ttctgcaaga tttccattat tattaggatc tgcatcaact acaatcatcc tattggagaa
     1621 tttgcttgat acatatgcat aatatcctcc tccttcttta gctccaaaat tgactccatg
     1681 gcatcctgga tcacagggta ggcttgctac gatcttattc gttttagtat cgataatggc
     1741 aatagttcca ctcaaggtat tggcagttac aacatatttt ccatcaggac tgactggtgt
     1801 ttgaattggc aaaacgtgtc cttcatcagc taaatttatt tccttttcct tttctacctc
     1861 tcctgtctcc atattgacaa cagatattgt acttgacaga aaattagcaa cataagcagt
     1921 ctttccgtca ggcatcatac ctgtagcaat aggcattgct gcagtagaag ttcttgattg
     1981 aatttttcct gcttcgcctt ctagtgaatc agtagcatac tcattgtagt catagatagt
     2041 gacatcatcc gtaaaatcat ttggtgttat cattttgctt ccatcagagg tgatccagtg
     2101 agcatgagga tgtgttggat attgtcctgc gtcttgcaaa ggtattattc ttagtatttc
     2161 aaatttacta ttttctttgt tgaatttcag ttctgctaca ccttgttctc cacttaaagt
     2221 cacatataac aaatcgtttg ctggatttgt cattacatga gacggagcat cgcctacacg
     2281 tgtattatcg agtaattgac ctgtctctct atcaaaggca gtaagcatgt tgtcgaacca
     2341 ttgtgtttga tagattattt cttgttcacg atcgctccac atgttatgcg gattgttcat
     2401 attgatatca ggaagagata cttttctttc tacattccaa tccactacat tgactttagt
     2461 agcagttcct gattttgttt tgttggctgt tttttcaaat tgtgtatcta tccatacttc
     2521 acctatacct gatttaatag gttcttctgg aataggtaaa ttacctggtt ttaaggaact
     2581 ggttgtaaat gtactataaa taagatcatt cagattaccc tctttctctc caaatctaac
     2641 agggactggt tgattttctt cataacccgg gaatttagga gtccatgttg gattagtacc
     2701 actatagtct acccaattag atggattatt tgctataaag aatgtcttta aaagtgccaa
     2761 tgcagtagca actccatttt tattatttgg atccaagtca actccagtac ttaggctcag
     2821 tttatctccc aaatctaatg cactagttcg aggatcatca gcaataactc ctcctaacat
     2881 atagggatgt attttacacg taaagacgta caagccaggt ttttctagct gtactattgc
     2941 tcctcctcta tatgcagtca tttgatcaaa cggcatgttg ggagctcctg ttggccagag
     3001 tagacttgat attgtatgta cagtgttagt acttgacata ataaaatggg cagatccgcc
     3061 tggctttact atgcctagag agtttgttgc atacttagtt acttctccac ctaaatttct
     3121 aaaccattga cctggttcat cagtaatgtc aaatgtaata aagttgggtg gtccctgttg
     3181 ttgttctgat ggtccacctg ctacactagg tcctggacct gcaatacttt tagtattact
     3241 gcctaccttt ccaacaataa attctcccat catgcctgct tccatatgtg caaatacatg
     3301 gcaatgatat tgccactctc ctggacctac tctatcacct gcttctacta taaaccaatg
     3361 tgatgacttt ggctgaatca attttgtatc aataatatct gttgttcctg gatctagcca
     3421 tctatgagca tggagatgaa atgtatgttg atgagctgcg ccaagtatat ggaaacgtac
     3481 caattgatta agatcggcac caagttttgg atttgtccat aacggtctct gtttatgatt
     3541 ttgatctatc tcttgtcccc agaaagttga tcctaccata aataatacat attgtttgtc
     3601 taagatattg acgtcgacgc tcactacctt accatcaagt tgagctggaa ctttatctat
     3661 tgggtttact attattgcac caaataatcc aagtgtccta aagctatctc caaaatactc
     3721 aaatgatcct atttctttgg gttcaattct ttgagttttt tgctctccat tttcatctat
     3781 tgaatgaata attagcaaat cattttgatt aatttcaatt gatgggccag gaatagtagg
     3841 aatttgtgga tatcgctctg taaggtcttc ttcagattca ccatctatga ggatatgttc
     3901 taacattct
//
LOCUS       DASPFX010000263         3279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_122564, whole genome shotgun sequence.
ACCESSION   DASPFX010000263 DASPFX010000000
VERSION     DASPFX010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122564"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VD694_05745"
     CDS             <1..420
                     /locus_tag="VD694_05745"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12246.1"
                     /translation="FCSQKIDDYDQKGKEVAKILDSYNLVYVHIKGPDEFGHDGDAPG
                     KMSNIELIDKNFFGTFLKSVTRAHVVVISGDHSTPCIKKSHSDDPIPLLVSGNSIESD
                     GSQRFTESWAGKGSIGTLKGSEVISHVLKMMSRQKNN"
     gene            complement(441..848)
                     /locus_tag="VD694_05750"
     CDS             complement(441..848)
                     /locus_tag="VD694_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HXW12247.1"
                     /translation="MLLPSEIESKLLIPAIRAILSRELVIEKGLKEEEVARMLGITQA
                     AVSNYLRGTRGDNELIAKLMSLSEIMSMIKEISNDLSTNRAYTAKTLSKFIGLCNYMR
                     YSLIICDAHHSLERNIDEKVCEQCKIILTGTQQ"
     gene            1081..1533
                     /locus_tag="VD694_05755"
     CDS             1081..1533
                     /locus_tag="VD694_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HXW12248.1"
                     /translation="MQKFDDLDMKILSELCKNANISVPRLSKLLSTNSSVLYSRIKRL
                     YKRNLIQKSTIVVNEPLLGINVKAVVGINRDPKLKEEIHTALLKIFQIISISEVTGRF
                     DILVTISATTLEELHNVVIKQIGKIEGVQNTETFVEMQRTEKERIFTT"
     gene            1764..2024
                     /locus_tag="VD694_05760"
     CDS             1764..2024
                     /locus_tag="VD694_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12249.1"
                     /translation="MLFYLIGSFVQNIDRFKYSNLAIKYEFLSFVQQKVVEIIQTLKL
                     AKKTSKDDYMTHLRLVLLGIGIVGGIAFVIKLIAEFLTFNGK"
     gene            2102..3130
                     /locus_tag="VD694_05765"
     CDS             2102..3130
                     /locus_tag="VD694_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase"
                     /protein_id="HXW12250.1"
                     /translation="MRKIIGTLGSHCSLQVLKGAKDEGFKTLLITEKKRYRVYRRFSF
                     IDHIILVDSFRDILNPDIQSRLNQLNCILIPHGTLISNLSSDEIESINVPLFGNKFIL
                     RWEADRNLKQKLMIESRLQVPTEINSKSEIKDLCIVKLHGAAGGKGYFLASDQNGFEQ
                     GFQKLLNENVVTSENDLYIQEYVRGVPVFLHFFYSPISGDIEFMGVDRRYESDIDGIS
                     RIPSKHQLNVLTEPTYNVVGNIPLVLRESLLEGVYQMGENFVEASERLVPPGMPGPFC
                     LEGVYNKDAKFISFEFSARIVAGTNLYVSGSQYSDLLFQKNMSMGRRIALEIKNAINK
                     RKLDKVLT"
BASE COUNT         1101 a          516 c          593 g         1069 t
ORIGIN      
        1 ttttgttcac aaaaaattga tgattatgat caaaaaggaa aggaagttgc aaaaattctt
       61 gactcgtata atcttgtcta tgttcacata aaagggcctg acgagtttgg acatgatgga
      121 gatgctcccg gtaaaatgtc taatattgaa ttaatagata aaaatttctt tggtacgttc
      181 ttaaaatcag tgacgagagc gcatgtagtt gttatttctg gtgatcattc tactccttgc
      241 attaagaaat cacattcaga cgatccaatc ccattattag tatcgggaaa tagtatagaa
      301 agtgatggga gtcaacggtt tacagaatct tgggctggta aaggttccat tggaacttta
      361 aaaggatcag aagtaatttc acatgtattg aaaatgatga gcagacaaaa gaataactag
      421 aatttaatct cacaagataa tcattgctgt gttccagtca ggattatctt gcactgttcg
      481 catacctttt cgtcaatatt tctctcaaga ctatgatgcg catcacatat gatgagtgaa
      541 tatcgcatat aattacacaa cccaataaat tttgacagag tttttgctgt gtatgccctg
      601 ttagttgaga gatcattgct gatttcttta atcatgctca tgatttcact gagagacatg
      661 agtttagcaa ttaactcgtt atccccacga gtacctctca aataattact tactgctgcc
      721 tgggtaattc ctaacattct agctacttct tcttccttca accctttttc aatcaccagc
      781 tctcttgata atattgccct tattgcaggg attaataatt tagattcaat ttctgatgga
      841 agtagcatta ggtgagccta aatatgactt gttaaatata tatagtttct ttcattgttt
      901 ccagacgtga aggatatatg aaacttttta gttctagttc ttgataatca atttcttata
      961 cccttaaatt ttattgaatt gtattgacta tacacgctca aattttttat agcattttgc
     1021 ataagctatt ttcatcaaaa attacattta ttaatactta agaatattat tgactagaaa
     1081 ttgcaaaaat tcgacgattt agacatgaaa atattgtcag aactttgtaa gaatgctaat
     1141 atttctgtgc caagattgag taaattatta tccactaatt cgtcagtgct gtatagtaga
     1201 attaagcgac tatataaaag aaatttaatt caaaaatcca ctatagtcgt gaatgaacct
     1261 cttttgggaa tcaatgttaa agccgtagtt ggaataaaca gggatccaaa attaaaagaa
     1321 gaaattcaca ctgcgttatt gaaaatattt cagataatat caatttctga agtaacagga
     1381 aggtttgata tcttagtgac tatcagtgca actactctgg aagaactaca caatgtagtc
     1441 attaaacaga ttgggaaaat tgaaggagtt cagaatactg aaacctttgt ggaaatgcaa
     1501 agaacagaga aagagcgtat ttttaccaca taactacaac atttacacct caaggttcac
     1561 aaaaaatcct tacgatatag atcttgaatg cttttagtag taacataatc aaaccaaatt
     1621 ctaagtgcga atgcattttg ataaaacaaa gttatgcaac atactactct agccggcgtc
     1681 agcttgaaat gggctctttc gtttctattg gtcagtcatt gttgattttg gaagcatttt
     1741 ctgacatgtg ttgttaatct agcttgcttt tttatctaat tgggagtttt gttcagaata
     1801 tcgatagatt caaatattcc aatcttgcga taaaatatga atttttgtct tttgtacaac
     1861 aaaaagtagt ggaaataata caaactctga aacttgcaaa aaaaaccagc aaggatgatt
     1921 acatgaccca tctcagacta gttctattgg gaattggaat agtcggtgga atagcttttg
     1981 taattaaatt gattgcagaa tttctaacct ttaatggcaa gtaaaggatt gttttcagac
     2041 aataacctaa tttcgaataa gattaattta ccagtcacag tagtccttta cggtagctaa
     2101 attgcgaaaa ataataggga ctctcggatc tcattgttca cttcaggtgt taaagggtgc
     2161 caaggatgaa ggatttaaaa cactattgat aacggaaaag aagcggtacc gcgtatacag
     2221 gagatttagt tttattgacc atataatact agttgacagt tttagggaca ttctaaaccc
     2281 agatattcaa agcagattaa accaattgaa ttgtattctg atacctcacg gcactctgat
     2341 atctaattta tcttctgatg aaatagagag tattaacgtt cctttgtttg gtaataaatt
     2401 tattttaaga tgggaggctg atcgtaatct taaacaaaaa ctgatgatag aatctagact
     2461 acaagtgcct acagaaataa attcaaagag tgagattaag gatctttgca ttgtaaagtt
     2521 acacggagca gctggaggta aagggtattt ccttgcgtca gatcagaatg gattcgaaca
     2581 gggattccag aaactcttga atgaaaatgt agttactagt gaaaatgatc tatacattca
     2641 ggaatacgtg aggggagttc cagtgttttt acatttcttt tattctccaa tctccggaga
     2701 catagagttt atgggcgtag atagaaggta cgaatctgat atagacggta tctcgcgaat
     2761 tccatcaaaa catcaactga atgtcctaac agaacctaca tacaatgtcg tgggaaatat
     2821 cccactagtc ttgagggaat cattattaga gggagtttat caaatgggcg agaattttgt
     2881 tgaggcttct gagaggcttg ttcccccagg aatgcccgga ccattttgct tggagggtgt
     2941 ttacaataag gatgcaaaat ttattagttt tgagttctct gcaaggattg tagcagggac
     3001 taatctatat gtctcaggtt cccaatattc tgacttgctt tttcaaaaga atatgagtat
     3061 gggaagaaga atcgcattag aaataaaaaa cgcaattaac aagaggaaac ttgataaggt
     3121 acttacatag gaatcaagac tttccctggc tacatcaaat tcatcattgt ataagatcta
     3181 tggaatttat caaaccatat attggatttt tcaagaaatg ctccaagctt tttttatcat
     3241 taatatccat aactattact ttttcattta caagtgata
//
LOCUS       DASPFX010000264         2366 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1180274, whole genome shotgun sequence.
ACCESSION   DASPFX010000264 DASPFX010000000
VERSION     DASPFX010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1180274"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1857)
                     /locus_tag="VD694_05770"
     CDS             complement(<1..1857)
                     /locus_tag="VD694_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HXW12251.1"
                     /translation="MAEQDEAYLEFLSMYDDGHVEMVQDLESVIEQEKLVRPLSEIKE
                     LISKNNAVGNNLLEDVLKSKRDYLVDFIVFEEPEPEMGHELKFLNIDEGIVTSLNYRN
                     IQRLYKFQEESILQILEGKDVVIVAPTASGKTEAFCIPIVQRISVEATHFSSLRLETK
                     LKRRKVFAVFVYPTKALARDQLPKIKQIASSVGLNVGIFDGDTSQSERELITRGLIPE
                     IIISNFDVIHYHLLHKTRFSRLLRTCKFLVVDEAHVYTGVFGANVHYIIKRLERMASS
                     ATKHKLQIIAASATLPNAHEFCSSLFGRDLSLIYGKGRKGKINLVIIFPSLHSQRSLM
                     LDILKRLIKASHKTIAFSKSHLGSELLAFYSNKQGNQIRVHRAGLLPSERKTVEDQFR
                     NGKILAISATPTLELGIDIGDVDAIVSDIVPVNRLIQRLGRAARTGQEGYAFLALGND
                     PISQYYKLHPEDYLQDQEIAYTDPTNSFVEEYQVLAMACDKPISMDESSPIQNTLQKL
                     ISVGLVQISRGKFVPELGKALDVLWNFSIRGIGSRVDIIYNEKKIGERQMPQALEELH
                     DQAIYFLGGKRYKVTKLYIESPDNNLEKGSYAKLAAIPGDYPYYTKAIVDEWP"
BASE COUNT          708 a          466 c          412 g          780 t
ORIGIN      
        1 tggccattca tcaacaatcg cctttgtata gtatggatag tctccaggta tagccgctaa
       61 ttttgcgtat gaccctttct cgagattgtt atctgggctt tctatgtata gtttggtaac
      121 tttatacctc tttcctccaa ggaagtagat cgcctggtcg tgcagctctt ccaaagcctg
      181 tggcatttgt cgttcaccaa tttttttttc attgtaaatt atgtcaactc tggatccaat
      241 acctctaata ctaaagttcc aaagtacatc taacgccttg ccaagttcag gaacaaactt
      301 tcctcttgag atttgaacca atcccactga aattaatttt tggagagtgt tctgaattgg
      361 agatgactca tccattgaaa ttggtttgtc acaagccata gcaaggactt gatattcttc
      421 tacaaaagaa tttgtcggat cagtgtacgc tatctcttga tcttgaagat aatcttctgg
      481 atgaagcttg taatattgac taattggatc gttgcccaat gctagaaatg catatccctc
      541 ctgcccagtt cttgccgctc tacccaatct ttgaataagc cgattaacag gaacgatatc
      601 agatacgatg gcatcgacat ctcctatgtc tattccgagc tccaacgtag gagtcgctga
      661 aattgctaat atcttgccat ttctaaattg atcttcaact gttttacgtt ctgatggtag
      721 caaacctgct ctatgaactc gtatctggtt tccttgtttg tttgaataga atgccaaaag
      781 ttctgatcct aaatgtgact tgctgaatgc tatagttttg tgacttgctt tgatcaatct
      841 ctttaagata tcaagcatta gtgatctctg ggaatgtagt gacggaaata tgattactag
      901 attaatttta ccttttctac ctttaccata aattaaactc agatcccttc caaaaagaga
      961 actacagaat tcatgtgcat ttggtaaagt ggcagacgcg gcaatgatct gaagtttgtg
     1021 ctttgtagca cttgatgcca ttctctcgag tctttttatg atataatgca catttgctcc
     1081 aaaaactcca gtatatacat gagcttcgtc cacaactaaa aatttgcatg tccttagtag
     1141 gcgggaaaat cttgtcttat ggagaagatg gtaatgaatt acatcgaagt tggaaattat
     1201 tatctccggg atcagccccc tcgtaattag ttccctttca gattgcgaag tatcaccgtc
     1261 aaatatacct acatttaatc ccactgaact agcaatttgc tttatttttg gaagctggtc
     1321 ccttgccaat gccttcgtag gataaacaaa tacagcaaac acctttcgtc tctttagttt
     1381 tgtttctagc cgaagagatg aaaaatgtgt tgcttcaact gaaattctct gtactatagg
     1441 aatacaaaag gcctcagttt taccagacgc ggtcggtgca acaataacaa catcttttcc
     1501 ctctaatatt tggagaatcg attcttcctg aaacttgtaa agtctttgga tatttcgata
     1561 gtttagacta gtaacgattc cctcgtcgat gttaagaaat ttaagctcat gacccatttc
     1621 gggctcaggt tcttcaaaga ctataaaatc aactagataa tctcgcttag acttcaatac
     1681 atcctcaagt aaattgttgc ccactgcatt atttttactg attaattctt ttatctcaga
     1741 caatgggcgc acgagttttt cctgctcaat tactgactct aaatcttgta ccatttcaac
     1801 gtgtccatca tcatacatgg aaagaaattc caaatatgct tcatcctgtt cagccataga
     1861 tgggacaata ccacatatac tacatttgga gcatgcaaac atcaatcgac cattataaat
     1921 cctattagca ttaattgagt taacgtcatt acaatttgga catctataac ctatagacac
     1981 attctgaaca tgtcttccca aaatatatct cttctcaata ttgcgctaaa tgcggcagag
     2041 attataataa taatatgtcg tttattgagt gccaccttac ttgttaatac taatagaata
     2101 atattaatag aatattctag ttggtcgctt tttgggtaag ggtgaatttt tttacgtcat
     2161 ttaattaaag atactcgaac tttagtcgta cgagtaaaat agaaagatat gaagtaactt
     2221 gaaacagagc ggctggatga aagtaacttg aaacagagcg gctggatgaa attaataaaa
     2281 ttaaaaaaga aaggagaatg ctaggacgaa ccttctcaaa caagtaccga atttctgtag
     2341 gtggaaaaat gttagtatga ctcttt
//
LOCUS       DASPFX010000265         2508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1922606, whole genome shotgun sequence.
ACCESSION   DASPFX010000265 DASPFX010000000
VERSION     DASPFX010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1922606"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..731
                     /locus_tag="VD694_05775"
     CDS             <1..731
                     /locus_tag="VD694_05775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12252.1"
                     /translation="SSENFSAHEHARNAAELMKDLESNITQTNPPSSDITQVYDQGQK
                     NSTTLALVVANIVDDILRKYGSAFAVRYDLTNMSNMMNMDMMTMPKMDNSSSHSMDMM
                     ATTNVTNGDSILGGHSNTSMIMENDLVNMNDYETAKVLSSNIKDQFSTQLRPRSLVNE
                     TTNLDTLENGLERLEEAVDVKALPEAIMDIVHVQFHPMLQRIYDLELQRNVMTESRLS
                     VCLRIYDISAAISRILSYSRAEIN"
     gene            complement(790..1167)
                     /locus_tag="VD694_05780"
     CDS             complement(790..1167)
                     /locus_tag="VD694_05780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12253.1"
                     /translation="MTEANTTLGKAIDKLVSNFYNLRNSEDNMLQYVYRSVEQHDALG
                     LLGISHSMPLPKNYFEREVNSEIPPIQDADGNNKLDCFDFFVILPGDNHCGYIGVRGL
                     SPFEGILRSDGAIDIMVQDWSSE"
     gene            complement(1130..1555)
                     /locus_tag="VD694_05785"
     CDS             complement(1130..1555)
                     /locus_tag="VD694_05785"
                     /inference="COORDINATES: protein motif:HMM:NF017121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF726 domain-containing protein"
                     /protein_id="HXW12254.1"
                     /translation="MPPREGNWYLYSWSWTDEQAANEQLNRTAMSLMSNNYTIPLIGF
                     SWDSNTPVNREGWVTAKDIAEKNGPKLAQFILDFKNECKDADIRLIAHSLGAEVVNST
                     LASLRSNQQWDKKAGSNIESVHLLGAAIDRSKYNIREGY"
     gene            2074..>2508
                     /locus_tag="VD694_05790"
     CDS             2074..>2508
                     /locus_tag="VD694_05790"
                     /inference="COORDINATES: protein motif:HMM:NF019272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HXW12255.1"
                     /translation="MNKAGITTITVIVLILFLIVEPSTTGSYSTNMLTKFNPVLATTD
                     SEGNTGQSSSPVSTSTAWNNGASSPTPKMESAYTAIGDKIYIIAGYGETGKRNKNSVE
                     VYDVKTDTWTTAAPVPVNLNHAAAAALDGKIYLVGGYLDNKIP"
BASE COUNT          798 a          479 c          451 g          780 t
ORIGIN      
        1 tgtctagcga aaatttctca gctcatgaac atgcaagaaa tgctgccgag ttaatgaagg
       61 atctggaaag taatattacg caaacaaatc ctccgtcatc agatattact caagtatatg
      121 accaagggca aaaaaattct actactcttg cattagtagt tgcaaatata gtcgacgata
      181 tattaagaaa atatggaagc gcatttgctg tacgttatga cttgaccaat atgtcaaata
      241 tgatgaacat ggatatgatg acgatgccga aaatggacaa tagttcttct cattctatgg
      301 atatgatggc aactactaat gttactaatg gcgatagtat tttgggcggg cattcaaata
      361 cctcaatgat tatggaaaac gacttagtaa atatgaatga ctacgaaact gctaaggttc
      421 tttccagtaa tattaaagac caattcagta ctcaactacg tccaaggtct cttgtcaatg
      481 aaacaaccaa ccttgataca ttagaaaatg gccttgaaag acttgaagag gcagtagatg
      541 tgaaggcctt gcctgaagct ataatggata tcgtacacgt tcaatttcat ccaatgttac
      601 aacgaatcta tgatttagag ttacaacgaa atgtaatgac agagtcaaga ctgagcgttt
      661 gtttgagaat ttacgatatt tctgcagcga taagcagaat tctttcttat tctcgagctg
      721 aaataaacta agctaaattc agaatccaat cagttcatgg caattaatat cgatattatt
      781 attattttat tattctgacg accaatcttg taccattata tctattgctc catcacttcg
      841 tagtataccc tcaaacggag aaaggcctct gacacctata tatccacaat ggttatctcc
      901 gggtaagata acaaagaaat caaaacaatc aagtttatta tttccatccg catcttgaat
      961 aggaggtatt tcagagttta cttctcgttc gaagtaattt tttggtaaag gcatactatg
     1021 agatattcct agtaatccaa gtgcatcatg ttgctcaaca gatctataga catactgtag
     1081 catgttatcc tcagaattgc gcaagttata gaagttactt actaatttgt caatagcctt
     1141 ccctaatgtt gtatttgctt ctgtcaatag cagcaccaag aagatgtact gactctatat
     1201 tcgaaccagc cttcttatcc cattgttgat tacttctcaa gcttgctaga gtactgttga
     1261 cgacttcagc acccaaagaa tgagcaatga gtctgatatc agcatccttg cattcattct
     1321 tgaaatcaag aataaattgt gcaagtttgg gtccattctt ttctgctatg tcttttgcgg
     1381 taacccaacc ttccctattt actggcgtat tagagtccca gctaaaaccg attaacggga
     1441 ttgtatagtt attgctcatc agggacatgg ccgttctatt tagttgctca ttagctgctt
     1501 gttcatccgt ccagctccat gaatataaat accaattacc ttctctgggg ggcatatgaa
     1561 cttatttgat aatttactgt tattattatt ggctaaatca ctactatacg tgtaatctgt
     1621 tatattatga ccttgaatca attgtccttt tgaacggtaa tcaaaatgtc cacgtgtaaa
     1681 aatactgcca ctattttgat acatatttgg gccagtttca gtcccagttt cagatgtatt
     1741 tatcctcgtt accataccat aggtaggtgg aaaagatata aaacatgaaa catgatgaga
     1801 atcaacgaaa atgatgaagc tgctgcagca aaggttacta atttagatat agattgtcca
     1861 tggacttttc ttattgattg attctgtttc aatctactca acaaatgtct atctgcccgt
     1921 ccatttaaag gtatgaaaac tcttttacac tctccagtga aaattttaac ggacgttatt
     1981 cgctcacctt atcgtattgt tttaacacgt ctctcagaac agaaaaacaa aaggaattat
     2041 aaccgtcatg cattaatgaa ttgcatttcg gatatgaaca aagcaggtat cacgacaatt
     2101 actgtcatag tgttgattct ttttttgata gttgaaccta gtactactgg ttcatatagt
     2161 acaaatatgt tgacaaaatt taacccggtt cttgccacaa ctgatagtga ggggaatact
     2221 ggacaatctt ccagtcctgt ctctacgtct accgcttgga acaatggtgc aagtagtcca
     2281 acgccaaaaa tggaatctgc atacaccgca attggtgaca agatctatat aatcgcaggt
     2341 tacggcgaaa ctggaaaaag aaataagaat agtgtcgaag tgtatgatgt taaaacagat
     2401 acatggacta ctgctgctcc tgtaccagtg aatctgaatc acgccgctgc ggcagccctg
     2461 gatggtaaaa tctaccttgt gggaggctat ctagacaaca agattcca
//
LOCUS       DASPFX010000266         2192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1570640, whole genome shotgun sequence.
ACCESSION   DASPFX010000266 DASPFX010000000
VERSION     DASPFX010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1570640"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            318..628
                     /gene="ffs"
                     /locus_tag="VD694_05795"
     ncRNA           318..628
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VD694_05795"
                     /product="signal recognition particle sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01857"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal-type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01857"
     gene            complement(661..1662)
                     /gene="dph2"
                     /locus_tag="VD694_05800"
     CDS             complement(661..1662)
                     /gene="dph2"
                     /locus_tag="VD694_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043364 - glycyl-radical enzyme activating
                     activity [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthamide biosynthesis enzyme Dph2"
                     /protein_id="HXW12256.1"
                     /translation="MIQIDEEKIHSTINEMKPRSVALDGPDGLLKKIQGCAHMLSEKY
                     QVPVYVIGDTSWGSCDLNLHAAETLGVDVLFNIGHTIAMEKFGDKVVMINAFDDVDFS
                     KIANRCAIELKKNFNKISLVTNSQYLPSVQQVKEIFENHGYKVVIGRGKGHLNDAQVF
                     GCEFYPAYDTRNDVDAYIFMGQSIFHSASIAIVTQKPTFMMDPYFNEYSEINEIARKL
                     EKKAILSVLKAQDAKTIGIIIGLKEGQFAKIKALEIKKMLEDQGKRIMLIAMTEITDE
                     RLLSFQDADAFVQVACPRIGTDNHFHKPVLSVPQAMSLIKILKGESQEGFLQIKHWL"
     gene            complement(1739..>2192)
                     /locus_tag="VD694_05805"
     CDS             complement(1739..>2192)
                     /locus_tag="VD694_05805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12257.1"
                     /translation="TGWAAISEIKNQRTQRALEYLSVMADRIISENGMYAETYRGDRP
                     EPFNSCILQAWSVGLYVYSLRELMLGIKPNMIKNNICLEPKLPDSIRSDLGNLNFDHF
                     ISTNEGLNKISISVRPDRDKITIIPERNDVKLPEFSSSTYSIDIQKNK"
BASE COUNT          631 a          421 c          412 g          728 t
ORIGIN      
        1 tgcgattagt gttgtaacta actaaatcta aagcagtcaa actaaggata gagaaatgaa
       61 gaacattatc agttatttgt attgaatctt aaataaaatt gtgggaacca atcgtattgt
      121 ctttcttgaa ttcattgtta tgttagtcaa ttgattgatg attccctcac catataggca
      181 ccaatcaagt tcacaggtat tatcagtaca aaaattggaa ataattaatg caatagtatg
      241 gtgtgccaaa acagtttgat tttgttatta cttgcaggat acacaaatat atctacactg
      301 tataacattt ttcgcggtag taggtaggat tggggtgtta gccgtacccc aaaccggaaa
      361 tcggctttat gctgggatca gtaactactg ggtaaatctt cagaggtgaa attcctgctt
      421 gctaggctga tatgaaacca cgccgtgtcg gatgggtatg agcaacaata tatgcgaagg
      481 catgtgtttg attgtgaatt gtcgaaatgg atgaggtccg ggagggtgca atcctaaggc
      541 agcgtatcca tgctagcacg tctacgtgat tgatcttgca gagcttgaga ttgggcttta
      601 cttctttagt ggtaccggta ggctactacc gcatttgagt gttacattat agattaacat
      661 ctacagccag tgctttatct gaagaaaacc ttcctgtgat tcacctttta atatctttat
      721 gagagacatt gcttgaggaa ccgataatac tggtttgtgg aaatgattat cagttccaat
      781 tctgggacaa gcaacctgca caaatgcatc tgcatcttgg aaggataaga gtcgttcatc
      841 tgttatttcg gtcatggcaa tcagcatgat tcttttccct tgatcttcca acatcttctt
      901 tatttcaagt gccttaatct tagcgaattg cccttccttc aatccaataa ttatcccaat
      961 tgtcttggca tcttgagcct taagcactga tagtattgct tttttttcga gtttccgtgc
     1021 aatttcgtta atttctgaat attcattaaa gtagggatcc atcatgaagg tcggtttctg
     1081 tgtaacaatg gcaatactgg cagaatggaa aatactctgt cccatgaaaa tgtacgcatc
     1141 tacatcattt ctagtgtcgt aggcgggata gaattcacat ccaaatacct gagcatcatt
     1201 aagatgaccc ttgcctcttc caataactac tttataccca tgattctcaa aaatctcctt
     1261 tacttgttgt acagatggga gatattgact gttggttaca agtgaaatct tgttaaaatt
     1321 cttcttcaat tcaatggcac atctatttgc aattttacta aagtctacgt catcaaaagc
     1381 attgatcatt acaaccttgt ctccaaactt ttccatagct atggtatgtc ctatattgaa
     1441 cagtacatca actcccaaag tctcagccgc atgaagattc agatcacatg aaccccacga
     1501 tgtatctcca attacatata cagggacctg atacttttct gataacatat gggcacagcc
     1561 ctgtattttc ttcaaaagtc catctggacc atctagtgct actgatcgtg gtttcatttc
     1621 attaattgtg gaatgtatct tttcttcgtc gatttggatc aaatatagta cccatcaaag
     1681 aattcaattc ggctaatttt aagatataat tcatttcccc tatgaaagat tagcatgact
     1741 atttgttttt ctgtatatca atagaatagg tggaactcga gaattcaggt agtttgacat
     1801 cattccgttc gggtataatg gttattttgt ctctgtcagg tctcaccgaa atgctgatct
     1861 tattcaagcc ttcgttggta ctaataaaat gatcaaaatt aagattgcca agatctgatc
     1921 ttatggaatc gggtaattta ggctccaaac agatattgtt cttgatcata tttggtttga
     1981 tacctaacat aagttcacgt aatgaataga cgtacagtcc aactgaccaa gcctgaagga
     2041 tgcaagaatt aaatggttca ggcctatcac cacgatatgt ttctgcatac ataccgtttt
     2101 ctgaaatgat tcgatcagcc attactgaga gatactcaag tgcccgttga gttctttggt
     2161 tttttatctc gcttatcgcc gcccagcctg tt
//
LOCUS       DASPFX010000267         3018 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_804527, whole genome shotgun sequence.
ACCESSION   DASPFX010000267 DASPFX010000000
VERSION     DASPFX010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804527"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1620)
                     /gene="argS"
                     /locus_tag="VD694_05810"
     CDS             complement(<1..1620)
                     /gene="argS"
                     /locus_tag="VD694_05810"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HXW12258.1"
                     /translation="MEGSPVKQEDFNISQAPRRELGDITCNIAFKLSKSLKRSPYEIA
                     KEIVEKQLSPYIKQHEMGPQSQLTLPWVEQLVSAEAHPAGYINFRINFAALAVSTMSQ
                     IITNPGYGFNNIGKGKNVIVEHTSVNPNKALHVGHLRNVILGDTIYRMLKATNHKTSV
                     LNYVDDSGLQVADIVVGFIFAGFPMEPKIDHSHSTMKFDQYCGDEVYAKINKMYEIHP
                     TLQEKRKCVLREIEKTKSAIAKFAALITDKVLTEQLKTCWRIKARYDLLNFETHIVSS
                     GLWSSTLDLLKNRGLIFKERAGKNKGCWIIRPKNGNIGLDGELEEADKVIVRSDGTST
                     YIAKDIPYAAWKTGLVDDPFSYSKFVEQWDGSFLWSTRVACSNQNENKTHSFQSRDMT
                     ITIIDSRQSRLQKIISHILFHLRSGAFNDNKMTNKKDSGSNYIHLAYEAVTINSQTAK
                     VLGLDIGGREFIHMSGRRGINVNADFVLDKLHEKALAEARKRNPKLADEQLIDIAEKI
                     AISSIRFYMIKQDLNKIIPFDIVECLSLEGET"
     gene            complement(1694..2401)
                     /locus_tag="VD694_05815"
     CDS             complement(1694..2401)
                     /locus_tag="VD694_05815"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HXW12259.1"
                     /translation="MDTVKAFAIDIDGTLTNNGGGTIYLEALASLRYLEQIGCRVIFV
                     TGRSSTEAYILSVFGGTTKVAVGENGGAVMTGPQQYITFANKENCMKGFEVLKDKFSN
                     IKLKPAFDRLTEVVLCRTFDIEKGQKALEDNQLDLYISDSQYAFHINEKGIDKSVGLT
                     KALKILEIDPAFAVAIGDSETDIPMFNMCGYSIALNHAKDNVKAKAKHVVRGRQGEGA
                     VDAVEFVAASFLSGTGT"
     gene            2566..2665
                     /locus_tag="VD694_05820"
     tRNA            join(2566..2596,2622..2665)
                     /locus_tag="VD694_05820"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2626..2628,aa:Arg,seq:ccg)
     gene            2776..>3018
                     /locus_tag="VD694_05825"
     CDS             2776..>3018
                     /locus_tag="VD694_05825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12260.1"
                     /translation="MSSQEVVTLQDRHNALLNRRELEVIIKNVKGQLTKIDASSIVAS
                     HFKLSQQDQVMPILIRSQTGLTDIHASFYVYKSQEDA"
BASE COUNT          821 a          659 c          539 g          999 t
ORIGIN      
        1 agtttcaccc tctaagctta gacattcaac aatgtcaaaa gggattatct tattcagatc
       61 ctgttttatc atataaaatc ttatagatga aatggcaatt ttttctgcta tatcgattaa
      121 ctgttcatcg gctagttttg ggttcctttt ccttgcttct gcaagtgctt tttcatgtag
      181 tttatctaat acaaagtcag catttacgtt aattcccctt cttcctgaca tatggataaa
      241 ctctctgcct ccaatatcca gtccaagtac tttagctgtt tgggagttta tagtgacagc
      301 ctcatatgcc agatggatat agttgctacc tgaatctttc ttgttagtca tcttattatc
      361 attaaatgcc ccagacctta gatggaataa gatatgggat attatcttct ggagtctaga
      421 ttgcctggag tcaataatgg ttatagtcat gtctcgagat tgaaagctat gagtcttatt
      481 ttcattttga tttgaacaag ctaccctagt agaccataga aatgaaccat cccattgttc
      541 tacaaattta ctataagaaa agggatcgtc aaccaggccc gtcttccacg cggcataagg
      601 aatgtctttt gcaatataag ttgaagtacc atcactcctc actattactt tatctgcttc
      661 ttctaactca ccatccaggc caatattacc gttcttcggc cgtattatcc agcaaccctt
      721 atttttcccc gccctttctt taaaaatcag cccccgattc ttcagtaagt ctaatgtact
      781 cgaccataat cccgatgata caatatgagt ttcgaagttc aaaaggtcat aacgtgcctt
      841 gattctccaa catgttttca gttgctctgt taatacttta tcggtgataa gagcagcgaa
      901 ttttgcaata gccgattttg ttttctcaat ttctcttagg acacattttc ttttctcttg
      961 cagtgtagga tgaatttcgt acattttgtt aatttttgca tagacttcgt caccacaata
     1021 ctgatcaaat ttcatggttg aatgactatg gtcaattttt ggttccattg gaaatccagc
     1081 aaagatgaat ccaacaacaa tgtctgcaac ctgcaatcct gagtcgtcta cgtaatttag
     1141 gacgctagtc ttatggttgg tggccttcag cattctatag attgtatcac caagaattac
     1201 atttcttaaa tgccctacat gcagtgcctt gttaggattg acgcttgtat gttctactat
     1261 tacattcttg ccctttccta tgttgttaaa gccatagcct ggatttgtga ttatttgact
     1321 catagtggag accgcaagag cagcgaaatt tatacggaaa tttatgtaac ccgcaggatg
     1381 agcttcggct gaaactaact gctcaaccca gggtaatgtt agctgcgatt gcggacccat
     1441 ctcatgttgc tttatgtacg gactaagctg cttctcaacg atttctttag ctatctcata
     1501 tggacttctc ttgagactct tacttaattt aaaagcaata ttacaagtaa tatctccaag
     1561 ttccctcctt ggcgcctgtg aaatattgaa gtcttcttgc tttactgggc ttccttccat
     1621 caagtatcca aggtctttac ttgctagcaa gactaagtta cgaatgttat caattaggtt
     1681 cctaaatgtc aattcaagtc ccggtccctg ataaaaaaga ggctgctacg aattctactg
     1741 cgtccacggc accttctcct tgtctccccc taaccacatg ttttgctttc gccttgacat
     1801 tgtcttttgc atggtttaga gcgatactgt aaccacacat attaaacata ggaatatcag
     1861 tctcgctgtc ccctatagca actgcaaatg cagggtctat ctctaaaatc tttagtgcct
     1921 tcgttagtcc tactgactta tctatgcctt tttcgtttat gtgaaatgcg tactggctat
     1981 ccgagatata caagtctaat tggttgtcct ctagggcctt ttgtcctttc tcaatatcga
     2041 atgtacggca tagtacaact tcggtgagcc tgtcaaaagc tggtttcaat tttatattgg
     2101 aaaatttatc ttttaatact tcaaaacctt tcatgcagtt ctctttattt gcaaatgtta
     2161 tgtattgttg cggtcctgtc atcactgcac caccattttc tcccacagcc acctttgtcg
     2221 ttccaccgaa tacagacaaa atgtatgcct ctgtcgatga tctccctgtt acgaaaataa
     2281 ccctacagcc aatctgttca agatacctta aactggctag ggcctctagg taaattgttc
     2341 cccccccatt attagtcaac gttccatcga tatctatagc aaaagccttg acggtatcca
     2401 attaagtatg tcctccaaat atccctggta tatataatta gttattgaat aagagacgaa
     2461 aagagattct gagcatcctg ctgataacta tgtattacct agaccaagcg ggggtcttca
     2521 gtctccgagc ctaccgttat atatggctat tttctaaatc gctgtgggtc cgttgcccag
     2581 ctaggatagg gtgctgattg gtcgattctt ggcaagcata agcctccgga gccagttgtc
     2641 gtgggatcga agcccaccgg acccgcctaa agttgattta atgaaaaatc aaactgtttc
     2701 gtatattgtg tcatgaagat gacttgactt ggggccgtaa aaatttataa gagatacgac
     2761 gacgtatttt agtaattgag ttcacaagaa gttgtcacac tacaggatcg tcataatgcc
     2821 ttgttgaaca gaagagaact tgaagtgatt ataaagaacg taaaaggtca attgaccaag
     2881 attgatgctt catcaattgt cgcgtcacat ttcaagctaa gccagcaaga ccaagttatg
     2941 ccgatattaa tacgatctca aacgggcctg actgatatac atgcatcatt ctatgtatac
     3001 aagtctcaag aagatgca
//
LOCUS       DASPFX010000268         4250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1668522, whole genome shotgun sequence.
ACCESSION   DASPFX010000268 DASPFX010000000
VERSION     DASPFX010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4250
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1668522"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VD694_05830"
     CDS             complement(<1..273)
                     /locus_tag="VD694_05830"
                     /inference="COORDINATES: protein motif:HMM:NF016050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclophilin-like fold protein"
                     /protein_id="HXW12261.1"
                     /translation="MKKLIKALFPNIDREVSIELDDSRSPKTFQAILENLPVEISITK
                     WGDELYTERTHIKANEENAKREVDYLDVAYWPEGNALCLFYGPIPVS"
     gene            complement(298..603)
                     /locus_tag="VD694_05835"
     CDS             complement(298..603)
                     /locus_tag="VD694_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12262.1"
                     /translation="MIPNKSNQISHLVDDNSKFETTFFEPALESYQDKRSSPNIVDSI
                     TDNTIKPIPSRIDYNFYNYCSICELKYPKQILRCKDCKQKVRTRPWHRSKIIDQKRI"
     gene            complement(653..1183)
                     /gene="hsp20"
                     /locus_tag="VD694_05840"
     CDS             complement(653..1183)
                     /gene="hsp20"
                     /locus_tag="VD694_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HXW12263.1"
                     /translation="MWKDSWGFRDRFFEQIDKEFSDAENMLNRMFKTVTESGADGPSQ
                     QPYFYGYQITVGTDGKPHIREFGNVRPSQKGLVEQNAVREPLVDTSINEKENAMIITA
                     EMPGITKEDVKVTMEEGLVKIHAEKGNKKYHTELPVDKELDEDTTKASYINGVLELRI
                     QFKKPLKTKSKEIKVE"
     gene            1447..2589
                     /locus_tag="VD694_05845"
     CDS             1447..2589
                     /locus_tag="VD694_05845"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HXW12264.1"
                     /translation="MALSSSKIIAIIIALAGVSFVFTSSSIIENEHTVEAKPDRKDIK
                     KKIEKAIENLREKFRDNDDEREKEREEEEEREEEEEKTNYDYNFADEGKTKLKDFNFV
                     AAGDYGCSKNTKNTISNMLDKKPELVLPLGDLSVDNTATCWLDLISPFDDKLQITFGY
                     HDVKNGDSKLSQYKEAFGLDKLYYSFDYRHVHFIVMSTLSDFAVTSDQYKFIEQDLKA
                     ASENENIDWIVVTSYGPFYTSPTAHPAKNDIRNIYHPLFDKYGVDLVLQGHNHNYQRT
                     YPVTFNPSKQSNPIVTNQFTTGYQGAKDGVVYAIVGTAGEGFHPLEGRQSYVATQFEG
                     KFGFLDIEISNGNPHTKLAATFYDNREDGIQDYFTIEKEIKNVKPQ"
     gene            complement(2670..3098)
                     /locus_tag="VD694_05850"
     CDS             complement(2670..3098)
                     /locus_tag="VD694_05850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12265.1"
                     /translation="MLIFLVVLQSINRFRESTFMQVNLYIFVTMAFENLDANSIIIFL
                     VGLLISTIVIYVVTLIFGQRRSIKLALFTAIIGSIVFGISYALFGNGFLSAVLGGIAW
                     LLALKTIYRMGWLKSLIVAVIVWIITTAVGTLLPTAIGPL"
     gene            3091..3594
                     /locus_tag="VD694_05855"
     CDS             3091..3594
                     /locus_tag="VD694_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HXW12266.1"
                     /translation="MSKSKSRTTSILDIDTGISRENVKRIVNILNDDLADEYVLLTKT
                     RNYHWNVEDPRFNDLHKFFDEQYELISASVDEIAERVRAVGGRTRATLKEFINSSQIG
                     EDVGSFPDADAMLGNLLSDHETIIKTLRKNIKECQDLNDEGTANFLTDKMEEHEKMAW
                     MLRSFIV"
     gene            complement(3727..>4250)
                     /locus_tag="VD694_05860"
     CDS             complement(3727..>4250)
                     /locus_tag="VD694_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12267.1"
                     /translation="KASLAGEDSKPSITFKLDEGAGSSSTTANANPMELPQAKPAITF
                     KLEDATADNANTEPVAGHEVQEVKPAVSTTSDDSTPAEEKPMLLSEEQVKQEQTKPGI
                     TTKLDDSDNSQSDDKPAQMSQENADSNDKSVSFDSNDKADKSNGNNDSDEDSETTITT
                     INTNVMDPFASLN"
BASE COUNT         1292 a          767 c          797 g         1394 t
ORIGIN      
        1 actgacaggg atagggccat aaaataagca taatgcattg ccttcaggcc agtatgcaac
       61 atccaaataa tctacttctc ttttggcgtt ttcctcgtta gccttgatat gggtcctttc
      121 agtatacaat tcgtctcccc atttagtaat gctaatttcg actggcaaat tttcaagtat
      181 tgcttgaaaa gtctttggag aacgtgagtc atccagctct attgagactt ctctatcgat
      241 gttaggaaac agtgctttga tcagtttctt catatcattt caatacaacc gaatatatta
      301 aattcttttt tgatctataa tctttgaacg atgccaaggc ctcgttctta ctttctgctt
      361 gcaatcctta caacgcaaaa tctgctttgg atatttcaat tcgcaaatag aacagtaatt
      421 gtaaaaatta taatcaattc tgcttggaat aggctttatg gtattgtcag ttatggaatc
      481 aacaatattg ggtgaagatc ttttgtcttg atacgattca agtgcaggtt caaagaaagt
      541 ggtttcaaat tttgaattgt catctacaag atgagatatt tggttacttt tatttggaat
      601 catttaactc aatcctaata caaacaaaaa aatatttagt tgactagtgt gactactcaa
      661 cttttatttc tttagatttt gtttttagag gttttttgaa ctgtatccga agttccagta
      721 ctccgttaat gtagctggcc tttgtagtat cttcatctag ttctttatct acgggtagct
      781 ctgtatgata tttcttattt cctttttcag catgtatttt taccaaacct tcttccattg
      841 tcacttttac atcctctttg gttataccag gcatctctgc tgttattatc atagcgttct
      901 ccttttcatt gattgatgta tctacaagtg gctctctaac cgcgttttgc tcaaccagtc
      961 ctttctgcga aggtcttaca tttccaaatt ctcgtatgtg aggtttgccg tcagttccca
     1021 cagttatttg atatccgtaa aagtatggct gttgacttgg gccgtcagcg cctgattcgg
     1081 ttactgtctt gaacatcctg tttagcatat tctctgcatc tgagaattct ttgtctatct
     1141 gctcaaaaaa tctgtctcta aatccccatg aatctttcca cattcttcca tttcacctta
     1201 cattatgtaa ggtacattac aatatatata tttttctcta tctagtaaat gtattatgac
     1261 tttatgattg ttttagatgt ttaattctat tgtaattcta ttgaattgaa aataagacag
     1321 cagtctaagt ctgtagatat tcaatcagac ataattaaat gcaacatttt ttccatttat
     1381 tgatactcgt agaatggact tgcaaaactt ttttataata tctaacaaaa tccaaatcag
     1441 aacaaattgg ctcttagctc gtccaagata atagcaatca taattgctct tgcaggagtt
     1501 tcttttgttt ttacctcaag ttctattata gaaaacgaac ataccgtcga agccaaaccg
     1561 gataggaaag atatcaagaa aaagatcgaa aaggccatcg aaaacctacg agaaaagttt
     1621 agagacaacg acgatgagag agagaaagaa agagaggagg aggaagaaag agaggaggag
     1681 gaagaaaaaa ctaactatga ctataacttt gcagatgagg gaaaaaccaa acttaaagac
     1741 tttaattttg ttgcagccgg cgattatgga tgctcaaaaa ataccaaaaa tactatcagt
     1801 aatatgctgg ataagaaacc tgagttggtc ttacctctgg gagatctttc cgttgacaat
     1861 actgctacat gctggttaga tctaatttct ccattcgatg ataagctaca aataacattt
     1921 ggttaccatg acgtaaaaaa tggagattcg aaattaagtc agtataaaga agcttttgga
     1981 ttggataagc tctactattc atttgattac agacatgtgc attttatcgt catgtctaca
     2041 ttatctgact ttgccgttac ttctgatcag tacaagttta ttgagcaaga tttgaaagct
     2101 gcatctgaaa atgaaaatat tgattggata gtagtaacta gctatggacc attttataca
     2161 tcacctacgg cacatccagc aaaaaatgac ataaggaaca tttaccatcc actatttgat
     2221 aaatatggtg ttgacttggt attacaagga cacaatcaca attatcagag aacttatcca
     2281 gtcacattta acccttctaa gcagtcaaac cccatcgtaa caaatcaatt taccacagga
     2341 taccagggag ctaaagacgg tgtggtatat gcaatcgttg ggacagctgg agagggtttc
     2401 catcctcttg aaggtcgaca gagttatgtg gctacacaat ttgaaggtaa gtttgggttt
     2461 ctcgatatag aaattagtaa cggtaatcct catactaaac tggctgcaac tttctatgat
     2521 aatcgagaag acggcataca ggattacttt acgattgaga aagaaatcaa gaatgtgaaa
     2581 ccacaatagt tttacaaatc ataatgaatt atgatgagcg gtatcaaact cttggcgttt
     2641 gggttgttca agcatacttt ggatttgtat tagagaggac ctattgcggt tggcaataat
     2701 gtgcctacgg cagttgtgat aatccaaaca atcactgcca caataaggga ttttaaccag
     2761 cccattctat agattgtctt taaggccaat agccaggcta ttccccccag taccgcagaa
     2821 agaaaaccat ttccgaagag agcgtaactg attccaaata ctatcgaacc aataattgca
     2881 gtaaacaaag ctagctttat gcttcttctc tgtccaaaaa tgagtgtaac aacatagatt
     2941 actatcgtag aaatcagcaa tccgactaga aatatgataa ttgaattagc gtcgagattc
     3001 tcaaatgcca tagttacaaa aatatacaaa ttaacttgca taaaagttga ttctctgaac
     3061 cgatttatac tttgtaggac aactaaaaat atgagcaagt ctaaatcacg aacaactagt
     3121 attttagata tcgacacagg aatttctcgt gagaatgtaa aaaggattgt caatatctta
     3181 aatgacgatt tggccgatga gtatgtcctt ttaacaaaga caagaaatta tcattggaac
     3241 gtagaggatc caagattcaa tgacttacac aagttctttg acgaacagta tgagttaata
     3301 tctgcttcag tcgatgaaat cgctgaaaga gtgagggccg ttggtggcag gacgagagct
     3361 acattaaagg aattcataaa ttcttctcaa ataggagagg atgttggttc atttcccgac
     3421 gcagatgcca tgttagggaa cctactatca gatcatgaga ccataatcaa gacgctgaga
     3481 aagaatatca aggaatgtca agatctaaat gacgagggaa cggctaactt tctaacggat
     3541 aaaatggaag aacatgaaaa aatggcgtgg atgctaagat cattcatagt atagctaatt
     3601 ccaagacgca aaccttggca taattcctgc atatcttttc ctttttcggt tagaatttgt
     3661 ctagttctga atagtcacat attaaaaaaa caaaaaattt ggaactttct ccagctaaag
     3721 tctcaactag ttcagtgatg cgaaaggatc cattacattg gtattaatag tcgttattgt
     3781 agtttccgag tcttcatccg agtcattatt tccgttagat ttgtctgctt tatcgttact
     3841 atcaaatgaa acggatttgt catttgaatc ggcgttttct tgactcattt gtgccggttt
     3901 gtcatctgat tgtgaattat cgctatcgtc aagctttgtt gttattcctg gtttggtttg
     3961 ttcttgtttt acttgctctt ctgatagcag cattggtttc tcttctgcgg gtgtgctgtc
     4021 gtcagacgtt gtggacactg ctggtttgac ctcttgtact tcatgtcctg ctactggctc
     4081 tgtgttggcg ttgtcggctg ttgcgtcttc aagtttgaat gtaatagctg gcttggcttg
     4141 tggtagctcc attgggttgg cgtttgcagt agttgatgat gatcctgctc cttcatcaag
     4201 cttgaaggtg atagatggtt tgctatcctc tccggctaga cttgctttct
//
LOCUS       DASPFX010000269         2678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1314214, whole genome shotgun sequence.
ACCESSION   DASPFX010000269 DASPFX010000000
VERSION     DASPFX010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1314214"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..891)
                     /locus_tag="VD694_05865"
     CDS             complement(<1..891)
                     /locus_tag="VD694_05865"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HXW12268.1"
                     /translation="MINREKQSPLLPILLVNFIGTLGFSIVLPFLVFLVMKFGGDAVV
                     YSLLAATYPAFQLLGSPILGRWSDIYGRKKVLLLSNAGTALGWILFLIALVLPHDGSL
                     NVNMIYFGTVMISVPLLFIFLARAIDGITGGNISVANAYLSDVSSEENRSSNFGKMAI
                     SSNLGFILGPALAGILGGTVYGALLPVLAALLLSIVTIFVIAFLLKESKTKANPILIS
                     QEGTIRKVFSQECKDCLPPASDVEPKFRDVFKLKYVSFLLILYFLIFLGFNIYYSSFP
                     THAANTLQWSVTQLGIFYAVL"
     gene            complement(943..1182)
                     /locus_tag="VD694_05870"
     CDS             complement(943..1182)
                     /locus_tag="VD694_05870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12269.1"
                     /translation="MTEFVLLNDDEQELWEIDYEKKIALNVSDLGIVKDNISNYAGTI
                     EDFLKQKGFSEIHFHNNSSLPSRAHYKDQRNCSFK"
     gene            1317..1910
                     /locus_tag="VD694_05875"
     CDS             1317..1910
                     /locus_tag="VD694_05875"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03618 family F420-dependent PPOX class
                     oxidoreductase"
                     /protein_id="HXW12270.1"
                     /translation="MLISDGRPEMYVQNDEKHDLGKMPASAEIVDVAPPNMESDSISK
                     SELLEGVTELNKDDLPRLFQFRNLAYVGTLSNDGSPHITPVWAEMVEDLILINTFEES
                     AKIKHISKDKRIALSVVEQNNPFNMVSIKGRVVEQTSEGADEHLKRLAKRYLGIGKYY
                     YRKPNHKRVILKIKPEKIMGLSIHPAFYFLAYSPWLK"
     gene            2056..>2678
                     /locus_tag="VD694_05880"
     CDS             2056..>2678
                     /locus_tag="VD694_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HXW12271.1"
                     /translation="MIPISEESIVDAAKKVSDSVVNIASVRMIQDQLFRVFPVQGVGS
                     GVVIDTRGHILTNNHVIDGTDRLRVTFGDSKQVNAKVVGKDKDTDLAVVRAELEDIEF
                     NVKDEVKLIPANFGNSDELSVGQIVMALGNPFGLTGGPTVTAGIISSLNRNVQFDNGI
                     LELIQTDAAINPGNSGGPLINTKGEVVAINTAKIPYGQGIGFAVPINT"
BASE COUNT          942 a          452 c          512 g          772 t
ORIGIN      
        1 taatacagca taaaatatcc ctaattgtgt tactgaccat tgtaatgtat tagctgcatg
       61 agtcggaaat gaagaatagt atatgttaaa tccaagaaat attaaaaaat ataatatcag
      121 taaaaacgaa acatatttta gtttgaatac atctcgaaac ttgggctcca catcgctggc
      181 agggggcaag caatctttac actcttgcga gaaaaccttt ctaattgtcc cttcttgaga
      241 aatcaaaatt ggattagctt tagtttttga ttcctttaat agaaatgcta ttacaaatat
      301 agttactatt gatagtaata atgcagccaa aactggaagt agagctccat aaactgtccc
      361 tcctaaaatt cctgccaacg caggacccaa aataaaacct aagtttgaag atattgccat
      421 ttttccaaaa ttactgcttc tgttttcttc agacgagaca tcagaaagat aggcatttgc
      481 aacagaaata ttgccgccag ttatcccatc aatcgctctt gctaggaaaa tgaacagtaa
      541 cggaacagat atcattactg ttccaaaata gatcatgtta acattcagag atccatcatg
      601 tggtaggacc aatgcaataa gaaacaatat ccacccaagt gccgtacccg cattgcttaa
      661 caaaagtacc ttttttcttc catatatgtc agaccatctg cctagtatcg gagatcctaa
      721 aagttggaaa gctggataag ttgcagccag gagactgtaa actactgcat cacctccaaa
      781 tttcattact agaaatacca gaaacggtag aactatgctg aaacccagcg taccaataaa
      841 attaactaac aagataggaa ggagtggact ttgtttttct cgattaatca cagtctaaac
      901 actgattgag taaagaagta acgaaggtcg tacattgcat actcatttaa atgaacagtt
      961 tcgttggtct ttataatgag cacgcgaagg aagtgaactg ttattgtgaa aatgtatctc
     1021 gctgaaacct ttctgtttca agaaatcttc tatcgtacct gcgtaattgc ttatattgtc
     1081 ttttacaata ccgagatctg agacgtttaa tgcaattttc ttttcataat caatttccca
     1141 taattcttgt tcgtcatcat tgagaagaac gaattcagtc atactatcat acataagaac
     1201 agcaatttat tatttatata tagaggaata gtgcaaatgt gaaaaattca taatctaatg
     1261 tatcattaat tttcgcaaaa aactagtaac tacatttggt tgtaaaatat ggaagaatgt
     1321 taatatctga tggacgacct gaaatgtatg tgcaaaatga tgagaaacat gacttaggca
     1381 agatgccagc ttcagcagaa attgtagatg ttgctcctcc caatatggaa agcgactcca
     1441 tttcaaaatc agaactattg gaaggagtca ctgaattgaa taaagatgac ctaccacgtc
     1501 tattccagtt caggaatttg gcttacgtag gaacgttatc aaatgatggt tcgccccata
     1561 tcacgccagt ctgggccgaa atggttgaag atttgattct gataaataca ttcgaagaat
     1621 cggcaaagat aaagcacatt tcaaaagaca aaaggatagc tctgtcagtt gttgagcaaa
     1681 ataatccatt taacatggta tcaataaaag gaagggtcgt agaacaaact agtgaaggag
     1741 ctgatgaaca tttaaaaagg ctcgcaaagc gatatttagg aataggaaaa tattattatc
     1801 gcaagccaaa ccacaaaagg gtaattttga agataaagcc agaaaaaata atgggtctat
     1861 caattcaccc agctttctat tttcttgcgt attcaccttg gctaaagtaa gataattagg
     1921 tcctagcagg ttctaagttg ccagttcaca agagcaactc tttttatttt cgtattggat
     1981 atacgatata tataaatacg taaacaggca aataatatat cggatgaccg atattatttt
     2041 ggaagtggat gtgaattgat accaatatct gaggagtcaa ttgtcgatgc tgctaaaaaa
     2101 gttagcgata gcgtagtaaa cattgcgagt gttagaatga tacaggatca attgtttagg
     2161 gtgtttccag tgcaaggtgt tggatcgggt gttgttattg atactagggg ccatatatta
     2221 acaaataatc atgttataga tggtactgat agactaagag taacatttgg cgactcaaaa
     2281 caagttaatg caaaagttgt aggaaaagac aaagacactg atttagctgt agttcgggct
     2341 gaacttgagg atatagaatt taacgtaaaa gatgaggtaa aattgatacc ggcgaatttc
     2401 ggaaactctg atgaacttag cgtgggacaa attgtaatgg cattgggtaa tccgtttggt
     2461 ttaactggtg gtccaaccgt aacagctgga attatcagtt cactaaatag aaacgtacaa
     2521 tttgacaatg gaatattaga gttaattcaa actgatgctg caattaatcc aggcaactca
     2581 ggtggaccgc taattaacac aaagggcgaa gtagtggcaa taaatacagc aaaaattcca
     2641 tacggtcaag gaatcggatt tgcagttccc attaatac
//
LOCUS       DASPFX010000270         2237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_887071, whole genome shotgun sequence.
ACCESSION   DASPFX010000270 DASPFX010000000
VERSION     DASPFX010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_887071"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VD694_05885"
     CDS             complement(<1..191)
                     /locus_tag="VD694_05885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12272.1"
                     /translation="MDFLTTEIPFLELIESILYIIGTIFAAILIALSISAYRNTKLRK
                     LLYAIVAFLLFGIFLFYEF"
     gene            complement(206..751)
                     /locus_tag="VD694_05890"
     CDS             complement(206..751)
                     /locus_tag="VD694_05890"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HXW12273.1"
                     /translation="MRKKTSNSNKERILQYIQNNPGCYLRQIRNELDLSMGSVQYHSY
                     QLQKGGKITSMRQGLYKLHFQSGTFEDHEKILLQVLNQETPREIILFIIEQGDPTQTD
                     IVKRLGISAPSVNWHVKRLIELNLVDEIREGKYKRYRLRDDSIDSRYIEQLLKTHHPN
                     LWNKWSNRLVEVFLSLTNEDK"
     gene            complement(862..>2237)
                     /locus_tag="VD694_05895"
     CDS             complement(862..>2237)
                     /locus_tag="VD694_05895"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HXW12274.1"
                     /translation="DTSKVEANIDTGESPYDVDVNPFSNRIYSSNRESNTVSVIDGFT
                     NKELTEIPVGNSPVGIGTNLAANWIYVASMDSKTISVIDPIVNKVRQTLKYASSPYDI
                     IVNPHTNKVYVSDLGKDSVLVLDGNNNTLISSIPVGSRPSGLAINTQTNTIYVSNFRN
                     DSVSVINGTSNKIETNIKVGDSPVGIAVNPRTNKIYVNNLVDNSISVVNGTTNKLVKD
                     ISLDPAIVASGVNNPFISIPLKVTFPLIASKLTVDPTTNFTYVTNTRTNGIIAIDGKT
                     DRIITKIFIEINPPNSGTVKCNDIQLGAGESTTLPLLSTAKCEAIPDRGYDFGHWTVT
                     NSTKQNPVFFNVTGYETITANFKGAILTETFIVLTSVIIGLVSTIGGWFYRQRSRLSF
                     KRNLTNIDYTYEMLSKNNKEECIKQLEQIQRDLNFLHRKGKINESQLEFLEKRINWYI
                     SRVSTSK"
BASE COUNT          652 a          410 c          361 g          814 t
ORIGIN      
        1 aaaaactcat aaaataagaa tatgccaaat aacaaaaatg caacaattgc atagagtaat
       61 tttcgtagct ttgtgttcct ataggcagaa attgatagag caatcaaaat tgcagcaaag
      121 atagtaccaa taatgtatag aatactttca atgagttcca agaaaggtat ttcagtcgta
      181 agaaaatcca aaatattccc tataactatt tgtcttcatt tgttaacgac aggaaaactt
      241 caactaatct attactccat ttgttccaga gatttggatg atgtgttttt agcaattgct
      301 caatatacct tgaatcaatc gaatcatcac gcagtcgata tcttttgtac tttccttccc
      361 ttatttcatc aaccaaattc agttcgatta atctcttaac atgccaattt acagaaggtg
      421 ccgatatacc caaccttttt acaatatcag tttgtgtagg atccccctgt tctattataa
      481 acaggataat ttctcgaggt gtttcttgat ttagcacctg cagtagtatc ttctcatgat
      541 cttcaaaggt gccagattga aaatgtaatt tgtacaaacc ctgcctcatt gatgttattt
      601 tccctccttt ctgaagctgg tatgagtgat attgaactga tcccatcgat aaatctagct
      661 catttcgaat ttgacggaga taacatcccg gattattctg aatatattgc aatatccttt
      721 ctttgttaga gtttgatgtc ttttttctca tgcttcaggt taccccacta taattactac
      781 cttattcgtc atattaatta tttattgaat ctattctttt atagagtctg gtagaaatgt
      841 ttaagcatcc ttcccttaaa tttatttgga tgtacttact cggcttatat accaattaat
      901 tctcttttcc aagaattcta gttgggattc gttaattttt cctttccgat gcaagaaatt
      961 caagtctctc tggatttgtt ccagctgttt tatgcattct tccttattgt tctttgataa
     1021 catctcatat gtataatcta tatttgttag atttctcttg aaggataacc tggacctctg
     1081 tctgtaaaac catcccccaa ttgttgaaac tagacctatt attacggaag tcaatacaat
     1141 aaatgtttca gttaaaattg cacctttgaa atttgctgtt atagtttcat atccagtaac
     1201 attaaaaaat acgggatttt gttttgtact gttggtaaca gtccaatgac caaaatcata
     1261 tcctctgtct ggtattgctt cgcattttgc tgtcgaaaga agtggtaatg tcgtagattc
     1321 gcctgccccc aattgaatat cattacattt tacagtgcca gaattaggag gattaatttc
     1381 gatgaatatt tttgtaatta ttctgtcggt ctttccgtcg attgctatta ttccattggt
     1441 cctcgtatta gtgacgtaag tgaaatttgt agtgggatct actgttagct tacttgcaat
     1501 aagtggaaaa gttaccttta aaggtatact aatgaaggga ttgtttactc cggaggcaac
     1561 tattgctggg tctaaagaaa tatccttaac cagcttattt gtggttccat tgactacgct
     1621 tatggaattg tccactaaat tatttacata aatcttgtta gtccgtggat taacagctat
     1681 tcctactgga ctatccccga ccttaatatt tgtttcaatc ttgttagatg taccgtttat
     1741 aacactgaca gaatcgttcc tgaagtttga gacataaatt gtattagttt gcgtattgat
     1801 tgctaatcca gaaggccttg aaccaacggg tatagatgat atcaatgtat tattatttcc
     1861 atctagtacg agtacgctat cctttcccaa atcagaaaca taaaccttgt tggtgtgtgg
     1921 attgactatg atatcgtatg gtgatgaagc atacttcaat gtctgtctta ctttattaac
     1981 aattggatct atgacactaa ttgtttttga atccatgctt gcaacataaa tccagttagc
     2041 tgctaaatta gtacctatcc cgactggaga atttcccaca ggtatttcag ttagttcctt
     2101 gttcgtaaat ccatcaataa cagaaactgt attagattcc ctattcgaag aatatattct
     2161 gttagaaaat ggatttacgt caacatcata tggtgattca cccgtgtcga tatttgcctc
     2221 cactttggat gtgtcaa
//
LOCUS       DASPFX010000271         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_963783, whole genome shotgun sequence.
ACCESSION   DASPFX010000271 DASPFX010000000
VERSION     DASPFX010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_963783"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            378..926
                     /locus_tag="VD694_05900"
     CDS             378..926
                     /locus_tag="VD694_05900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12275.1"
                     /translation="MKQSAASTKLPTKCVTFRLSKEKLEQLRKAANDRNISLNTLVNQ
                     ILKAYLDWHSMAAHAKLYYLPKSFLVRLLNELTNDELSELARDVAKNDLVDISLFLRG
                     GFNIASISEIAETWLRISQMPHRVEVARDVHKIIIEHDMGHKYSYLIKEVSRYLLEIA
                     FETKSSCDVTENAVIITIWQRQ"
     gene            1059..1460
                     /locus_tag="VD694_05905"
     CDS             1059..1460
                     /locus_tag="VD694_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12276.1"
                     /translation="MSAMSQQQQQQQQLLLTQNLTVPQILRTYGKRFRQITEQYSDGL
                     NGRCALGVILSYYGWNGRDDSQATRKLLNTLIALSYAGIERNVLMEMNDSGFTFDEIA
                     DYIDKVSAPARNGDESAYHGFSSDYDTSSRI"
     gene            1519..1980
                     /locus_tag="VD694_05910"
     CDS             1519..1980
                     /locus_tag="VD694_05910"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HXW12277.1"
                     /translation="MMSKNTINRYRLPIPNDQLQRIDRSSSPAHQGRLRNAIDFIASE
                     ETPVLAAANGVGTFVKDSSNTGGPSPVYWNDTNFIVILHSNMEYSRYDHLQYKSSKVK
                     VGQSVKAGGEIAKVGMTGYTFLPHLHFQVFVVTGNNAWTDFDTLEVEDFDN"
BASE COUNT          662 a          356 c          413 g          644 t
ORIGIN      
        1 tgacccactt ttaccttggg gattaaatac acatggtctc tgatattttc atcatcaaca
       61 acaatgagct tatttttgga ttctgcgatt actgttccaa actctctgtc tctattatga
      121 tttgataata aagctggagc actgtaaaac atacaatact ttcccgatgg atcgccaata
      181 ttgatggctt cgcttttcat cgtgaatcag agaaatgttc gtaaaagtat ataacagttg
      241 gttcttcggt tagtccaata agttttgcgt atatttattg cctttgtatg taaaagcaca
      301 tcttgtgatg ttcttttcgg cgatttttga attattgaag caatatttaa ttatggcaaa
      361 ttacttaaat agatctcttg aagcagtcgg cagcctcaac taagttacca actaagtgtg
      421 ttacatttcg actatcaaaa gaaaagttag agcaactgcg taaagctgca aacgacagaa
      481 atatttctct aaatacgctt gttaaccaaa tactcaaagc atatcttgac tggcatagta
      541 tggcagcaca tgccaagctg tactacttac cgaagtcatt tttagttaga ttgcttaacg
      601 aactcaccaa tgatgaatta agtgagctag cacgtgatgt agcaaagaat gatcttgtag
      661 atattagttt gtttcttcgg ggtggattta atattgcttc aatttcagag attgcagaaa
      721 catggttaag aatttcacag atgccccaca gagttgaagt cgctcgggat gtccataaga
      781 ttatcattga gcatgacatg ggacataagt attcatatct gattaaggag gtctctagat
      841 atctgttgga aatagcattt gaaacaaagt catcttgtga tgttacagaa aatgctgtta
      901 ttataacgat ctggcagcgg cagtaataac tactattatg acctccaaag ccaagtgttg
      961 tgcaactggt ctgtctttcc aattttttct aatttttaag gctaatcatg tttttgccca
     1021 catagattat agtttctgaa tagcatgttg attatgttat gagtgcaatg agtcaacagc
     1081 aacaacaaca gcaacaacta ctactaacac aaaatcttac tgttccccag attcttcgta
     1141 catatggtaa acggtttaga cagatcactg aacagtattc tgatgggctc aatggcagat
     1201 gtgctcttgg agtgattctg tcgtactacg gttggaacgg ccgagatgat tctcaagcta
     1261 caagaaaatt actgaatacg ttaatcgcat tgagctatgc tggcatcgag agaaatgtat
     1321 taatggaaat gaatgactca ggttttacgt ttgatgagat cgccgactac attgataaag
     1381 tgtcagcgcc agctcgtaat ggtgatgagt cagcttatca tggtttttcc agtgactacg
     1441 acacttcgag tcgaatatga tagaacaatt aaaagtcatg cagttaacaa ttgtcatctt
     1501 acaataagag aataagctat gatgagcaaa aatactatca ataggtatag gctaccgata
     1561 ccaaacgatc agctacaacg tatcgataga agctcatcac cagctcatca ggggagatta
     1621 cgaaatgcaa ttgattttat agctagcgaa gaaacgcctg ttcttgctgc ggctaatgga
     1681 gtagggacat ttgttaaaga tagttcgaat accgggggac ccagcccagt ctattggaat
     1741 gacacaaatt ttatcgtaat tttgcattca aacatggaat attctcgata cgatcatctt
     1801 caatacaaga gttcaaaggt gaaagttggt cagtctgtca aggcaggtgg agaaatagcg
     1861 aaggttggaa tgactggata tacatttcta ccacatctcc atttccaagt ttttgtagtt
     1921 acgggaaata atgcatggac agattttgat actttagagg tcgaagattt tgataactaa
     1981 actaatcggt ttttttcaga acaaatgact aagtatgtac agaagatcac atatagtaat
     2041 attgtatgtt tatcaatagt tagtagaaaa agagt
//
LOCUS       DASPFX010000272         8851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1245995, whole genome shotgun sequence.
ACCESSION   DASPFX010000272 DASPFX010000000
VERSION     DASPFX010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8851
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1245995"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /locus_tag="VD694_05915"
     CDS             <1..474
                     /locus_tag="VD694_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit beta"
                     /protein_id="HXW12278.1"
                     /translation="AVMIKNIKALVVASSMVNVDKSYETLLSRIQGDLVNASKKDSAR
                     LEIPKPQIIWVGQRTIFRNFMEFPKALRREPEKLLLYLNKELASAGYIAGERVIFLGR
                     KEPSSFGALMERYVKDYVICPVCQSPDTRTEKVKKLGFLVCEACGARSSIKGNYA"
     gene            543..1196
                     /locus_tag="VD694_05920"
     CDS             543..1196
                     /locus_tag="VD694_05920"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M57 family metalloprotease"
                     /protein_id="HXW12279.1"
                     /translation="MNKTYNLVFSLNVIMIVAILSYPESFSVFKDLSSENQNILQICC
                     TWGKSLDDGVLTFHTNNSKHLVTDSVIQKSFEQWDSKLPRLNFLEAQNASSADVIVSF
                     EDKGEQTVGQTTNVLNDKGFIKRVNIRISVNFSEVRLAEDTIKLVLTHEIGHALGLGH
                     SNFHDLMNPIVNYQNTIITNCEIDAVLIANNWKLVENLQQPKKPELPIEKTIDCNSG"
     gene            1355..1951
                     /locus_tag="VD694_05925"
     CDS             1355..1951
                     /locus_tag="VD694_05925"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HXW12280.1"
                     /translation="MLNRFREKITPITTRIGNIFGSLGLSPTFWSMIGFAFAILSTVF
                     FGLNFLNQQGWEFPWQVIASIMLLISGFFDIVDGSVARVMKKTTTRGAFLDSNFDKVS
                     EASIFIGIAIGGLSNPILAMIALSTSILVSYLRARAESLGIELKGIGIGERAERLLIL
                     AICGFIPISGSIQWGVLIIILISAISFIQRFMYVLKRI"
     gene            complement(1966..2253)
                     /locus_tag="VD694_05930"
     CDS             complement(1966..2253)
                     /locus_tag="VD694_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S26e"
                     /protein_id="HXW12281.1"
                     /translation="MPKKRTSRGRAKGGKGSSGTVHCSQCGAMVPRDKAKKVTGRITL
                     VEPTLAKELRAQGAYIAPVTDVKFYCVSCAVHRGIVKVRSEVERRRTGRLG"
     gene            2354..3268
                     /locus_tag="VD694_05935"
     CDS             2354..3268
                     /locus_tag="VD694_05935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12282.1"
                     /translation="MKAAILSNIVLDEIMSRDLKSSQSLGGPAAYCGVTARKFGFDTT
                     IFTHFGNDLDHQYIEYLKNQGVSFSNLQPSSFPTTRFVLKNFETDRELTLQSKCIPID
                     IEEIKNVKANCWIISPVFDEVPLDILQYLVSSSKEKQFVMLDPQGYTRTVDSKGRVSI
                     RKKMDIPIHKVNGIKLDSQEISCFTNGLQGMEGMKKIRSLYGIEYVLYTHDQVIHLLE
                     EGKHYWIGVPKHETPDSTGLGDIIASTFALTMVKENDSVWAFCFAAGALSAALQTKEI
                     GIKKIPSRSAIEQTATYYYNTMNFEIIG"
     gene            3315..4322
                     /locus_tag="VD694_05940"
     CDS             3315..4322
                     /locus_tag="VD694_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HXW12283.1"
                     /translation="MKVAISSLSSRDDSLLGKIKRILDDEYIDSEIIKRSDKMTTSNI
                     DMVITAGGDRAILDYSHYVKEFSVPVLGVYESDSTGFLGQIDVSDLKKSIGRIKKGDY
                     EIDNVCRLSVNVDGKEVEPVLNDISLFPRKSATLMEYILKINGNDLWHDNSDGVIIST
                     PIGSTAYCMSAGGPMVLQKSPVFVIVPVNSMDNTRRPLIVPNTDRLEIEDILCRYLCE
                     VILDGGKRVPVRKNIICEKHEFPAKFVRLIKDSPMDIIAKKVKLAGDLLDMPPSAKLI
                     LKTLEYEGELSQKDLSKRTMLPERTIRLSLSHLIQRGYVRKKTSLRDARQKTYELNLK
                     L"
     gene            complement(4335..5957)
                     /gene="pyrG"
                     /locus_tag="VD694_05945"
     CDS             complement(4335..5957)
                     /gene="pyrG"
                     /locus_tag="VD694_05945"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HXW12284.1"
                     /translation="MQHRHSKPDSKFPKFIFITGGVMSGLGKGIVASSVAKLLQLTGL
                     RVTCTKIDPYVNYDAGTMNPTAHGEVFVTDDGGECDMDMGNYERFLNTPMTKWHNITT
                     GRIYSDVIRAEREGKYLGQCVQIIPHVTDVIKNSLKKLAKGYDVLVVECGGTVGDIES
                     LPFLESFRQMELEEGDTKTLFIHVTLAPILDVVGEQKTKPTQHSVQELRRIGIHPHIL
                     AVRCQKPLNKEARHKISMFASVREQCVISSHDCSSIYEVPEILKDQGIVDVISDKLDL
                     KNRNIRWAEWKKVTNSFTNFSGNVNIGIVGKYVNLPDSYVSVYQALLHSSAKMGKKLS
                     VEWIDSERFENGNKNEVKFLNKFDGILVPGGFGARGSEGIINSINYARQKDIPFLGIC
                     FGFQLSLIEFARNKCGLVDASSQEFNHNNSNSLVKFMPEQEHTVDLGGTMRLGNHDIT
                     IIPNTLASSIYRYKRIGRRHRHRYEFNQDYRQVIEENGMVLSGHSDKGRRIEILEFPS
                     NKFFFAVQYHSEFSSIPGKPEEAFEAFIASCI"
     gene            complement(6087..6377)
                     /locus_tag="VD694_05950"
     CDS             complement(6087..6377)
                     /locus_tag="VD694_05950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12285.1"
                     /translation="MDYDSKTIIENGIGTIGKIKILKALAEENKMVTIYVLHKRTGLK
                     REDIKRNLKDLRSIEWIKEKKMANTMYILNKDNEYVNAILGFFANVGYIGQA"
     gene            complement(6377..7534)
                     /locus_tag="VD694_05955"
     CDS             complement(6377..7534)
                     /locus_tag="VD694_05955"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW12286.1"
                     /translation="MSESKIFLDRSKLSARYVPDELHHREREMSLLMMMFKDSYIKPE
                     QFLFSTPQIVGRSGIGKTSTIIKFSGMLESEFAKAGLTLKVAYINLKLQGGNKYAVYR
                     FLLEKIAPELPSQGLSAEEMLRYLLSYLYDNKLYTLIILDEIEFLLRSNKDSGIIYDF
                     TRLNEFDLSKHCNVIGVIFIARSTDFHDKIDSSELSTLGRIPIEFLPYSEEQIGDILV
                     TRSSESFNPKVVGTDIIDEVSLITTSSQVGGDVRYALDLLLYAGNLAEANGSDRITLE
                     QIRKVHGHNRPSITMEDLKELPKNHLLTLMAILKVQSKRKKQYVEIKEIRAYALELVE
                     EHKAKKFEFEDCMSDLLDRKIIEMKSLKEIGMNITSLVELEPLLEQQINKK"
     gene            7630..7998
                     /locus_tag="VD694_05960"
     CDS             7630..7998
                     /locus_tag="VD694_05960"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW12287.1"
                     /translation="MPRISYLDFSADDPDRAVNFYSKVFGWQINKWEGPKEYWEIKTG
                     EPNEPGIDGGLSKRERIGDWTTPFINVPAIDQYIDKIESNGGKIIQPKTSIPSIGYTL
                     LVKDTESNTIGLFEENKEAK"
     gene            complement(8108..8458)
                     /locus_tag="VD694_05965"
     CDS             complement(8108..8458)
                     /locus_tag="VD694_05965"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12288.1"
                     /translation="MLILEFSLLQIRLALEHFTLNKDDYAMVIYDLNMPGLNGMELIK
                     KTKSLNPYARMILMTAFNTDDAMFKDFAKKQIIKGFLHKPVRIDDLCAKLNEELDLYE
                     MGIQKVRHNKIIYE"
BASE COUNT         2752 a         1651 c         1566 g         2882 t
ORIGIN      
        1 gccgtcatga taaagaacat taaagccctc gttgtagcat ctagtatggt caacgtggat
       61 aaatcatacg aaaccctctt atctagaatt cagggagatt tggtgaatgc ttcaaagaaa
      121 gattcagcaa gacttgagat ccccaagcct caaatcattt gggtaggaca gagaacaatt
      181 tttagaaatt tcatggaatt tccaaaggca ttaagaaggg agcctgaaaa gttgttactt
      241 tatttgaata aggagctggc atcggcaggg tacattgccg gagaaagggt tatttttcta
      301 ggtcgaaagg aaccatcatc ttttggagct ctaatggaaa ggtacgttaa agattacgtc
      361 atttgtcctg tatgtcaaag tccagataca aggacagaaa aggtaaaaaa actagggttt
      421 ctagtatgtg aggcgtgtgg tgcaaggtca tctattaagg gaaattacgc ctagaatcaa
      481 tcttcaagta gtaatacaac ctctatattg gattgattgc agaaaaatag cgcttgatat
      541 aattgaataa aacctacaac cttgtttttt ctcttaatgt aataatgata gttgccatac
      601 tgtcttatcc cgaatccttt tctgtattca aggatctgtc gtcagaaaat cagaatatct
      661 tgcagatatg ttgtacctgg ggcaaaagcc ttgatgacgg tgtgttgaca tttcatacca
      721 acaacagtaa gcacttggta acagatagtg taatacaaaa gtcatttgag caatgggact
      781 cgaaattgcc aagattgaat tttttggagg ctcaaaatgc atccagtgcg gatgttatag
      841 tttcatttga ggataagggt gaacaaacag taggccaaac tacaaacgtt ctaaacgaca
      901 aaggtttcat aaaaagagta aacataagaa tttctgtaaa ttttagcgaa gtgaggttgg
      961 cagaagatac cataaagctt gtgttaactc atgagatagg acatgctctt ggactaggac
     1021 actcaaactt tcatgatcta atgaacccga tagttaatta tcaaaatact atcattacca
     1081 attgtgagat tgatgctgta ctaattgcca acaactggaa attagttgaa aatctacaac
     1141 agccaaaaaa accagaacta ccaatagaaa aaactatcga ttgtaattca ggctaaacaa
     1201 aagatgagcc tttaatcaaa atagtcgaca gttattatac catcatccgt gagtgttttt
     1261 gagatctatc agcatatccc attgtataat ttgaatttgt atacaataag gataacaaag
     1321 attatttgca aggctatcga taatatcatg atatttgctt aataggttta gggaaaaaat
     1381 aactcctatt acaactcgaa taggaaatat ttttggttca cttggtttgt ctcctacctt
     1441 ttggagtatg attggatttg catttgctat tctatctacc gtattctttg gacttaattt
     1501 tttgaaccaa caaggctggg agtttccctg gcaagtaatt gctagtatca tgctgttgat
     1561 ttcaggcttt tttgatattg tggatggaag tgtagctcgt gtaatgaaga aaactacaac
     1621 gagaggtgca tttttagatt caaactttga caaggtttca gaggcttcaa ttttcatagg
     1681 catagcaata ggcggtttat caaatccgat cctagcaatg attgctttat ccacttctat
     1741 attggtgagc tatctccgcg ctagggcaga atcccttggc atagaactca aaggcatagg
     1801 tattggcgaa agagccgaaa ggttactaat tttggcaatt tgcggtttta ttccaatttc
     1861 tggatcgatt caatggggag ttttaataat tatcctaatc tctgccatct cctttatcca
     1921 gagatttatg tatgttttaa aaagaatatg aaaaatagat taatcttatc cgagtcttcc
     1981 tgtccttcta cgttccactt ctgatcttac ttttactatt cctctgtgta cagcacaaga
     2041 aacacaatag aatttaacat ccgtaacagg tgcgatatat gctccctgag ctcttaattc
     2101 ctttgccaaa gtgggttcca ctaacgtaat cctaccagta actttttttg ccttgtctct
     2161 gggcaccata gcaccgcact gactacaatg tactgttcca gagcttcctt tcccgccctt
     2221 cgctcgtcct ctgcttgtcc tcttctttgg cactactcaa ctactatctc ttcttctttt
     2281 aaatcttctg atatccctga tgccttcata tcaacattta tcaaagcaac agaatcaatg
     2341 atggtattta gagatgaagg ctgccatact ctcaaacatt gtactagatg aaataatgtc
     2401 acgagatcta aagtcaagtc agagtttagg aggtcctgcc gcatactgtg gtgtaaccgc
     2461 aagaaaattt ggatttgata ccacgatctt tactcatttt ggaaatgatc ttgaccatca
     2521 atatattgaa tatctgaaaa accagggagt gtcctttagt aatcttcaac cttcgagttt
     2581 tccaacaact cggtttgtcc tgaaaaactt tgaaactgat cgtgaactga ctttgcaatc
     2641 aaaatgtatt ccaatagata ttgaagaaat caaaaatgta aaggcaaatt gctggataat
     2701 tagtcctgtt tttgatgaag taccacttga tatcctgcaa tatttggttt catccagtaa
     2761 agaaaaacag tttgtcatgt tggatcctca gggttacaca agaactgtcg attctaaagg
     2821 aagagtttct ataagaaaaa aaatggatat accaatccat aaagtaaatg ggataaagct
     2881 agatagccag gaaatttcct gctttacaaa tggtctacaa ggaatggaag gcatgaaaaa
     2941 aattcgctcc ctgtatggaa tcgagtatgt attatacacg catgatcaag tcattcatct
     3001 tcttgaagaa ggtaaacatt actggatagg cgtacctaaa catgaaactc ctgattcaac
     3061 aggattaggt gatatcatag catccacatt tgcattaact atggtaaaag agaatgattc
     3121 tgtttgggca ttttgctttg ctgcaggggc attatctgcg gcactacaga caaaagagat
     3181 tggaattaaa aagataccat caagatcggc cattgaacaa accgccacat actattataa
     3241 tacaatgaat tttgaaataa ttggatgata aatcaggttt aaatttgagt atttgttgac
     3301 ttttaataac tacaatgaaa gtggctatct caagtttaag ctccagagac gatagtctac
     3361 taggcaaaat caagcgaatt ttagatgacg aatatattga ttcagagata ataaaacgat
     3421 ccgacaaaat gacgacttca aacatagata tggtgattac tgcaggtgga gatcgcgcga
     3481 ttcttgatta ttcacattat gttaaggaat tctcagtacc agtccttggg gtatacgaat
     3541 cagattcaac tggatttttg gggcagattg atgtaagtga tttaaaaaag tccataggta
     3601 gaataaaaaa aggtgactat gaaattgata atgtatgcag actttctgtt aatgtggatg
     3661 gtaaagaagt tgaacctgtt ttaaacgata tttcgctatt tcctagaaaa agtgctactc
     3721 ttatggaata tatattaaag ataaatggga acgatctctg gcatgataac agtgatggcg
     3781 taattatttc cacgccaatt gggtcgacag cttattgtat gtctgcagga ggaccaatgg
     3841 ttctacaaaa atctccggtc tttgtcattg tgcctgtaaa ctctatggac aatacccgga
     3901 ggcctcttat agttcctaat acagataggt tagaaattga agatatactc tgtagatatt
     3961 tgtgtgaagt aatactagat ggaggaaaga gggtacctgt tagaaaaaat atcatatgtg
     4021 aaaaacatga atttccagca aaattcgtga gattgatcaa ggattctccc atggacatta
     4081 tcgctaaaaa agtaaaattg gcaggagact tacttgacat gcctccaagt gccaagttga
     4141 tattaaagac gcttgaatat gaaggcgagt tgagtcaaaa agaccttagc aagagaacga
     4201 tgttaccaga gaggaccata agattgtcat tgagccacct cattcaacgc ggatatgtca
     4261 gaaaaaagac atcattgcgt gatgccagac aaaaaactta tgagctaaat ctaaagctct
     4321 gatttagata cgatttagat acaagatgca atgaatgctt caaatgcttc ttcgggtttg
     4381 cctggtatac tgctaaattc cgaatgatac tgtactgcga aaaagaactt gtttgatgga
     4441 aactctagaa tttctattct tctcccttta tcagaatgtc ctgacaagac catgccgttt
     4501 tcttcaataa cctgtctgta atcttgatta aattcgtacc tgtgtctgtg tcttcgccca
     4561 attctcttgt atctatatat ggaacttgct agcgtattgg gaattattgt aatgtcatgg
     4621 tttcccagtc tcatagtacc tccgaggtca actgtatgtt cctgttcagg catgaatttt
     4681 actagggagt tactattatt atgattaaat tcctgtgagc tggcatcgac tagaccgcat
     4741 ttattccttg caaattctat taacgatagt tgaaatccaa aacaaattcc caaaaatggt
     4801 atatcctttt gcctagcata attaatcgaa tttattattc cctcacttcc tctagcgcca
     4861 aatcctcctg gtaccaggat tccatcaaat ttattcaaga atttaacttc atttttattt
     4921 ccattctcaa atctctcaga atcaatccat tcaacactta atttcttacc catctttgcc
     4981 gatgagtgca acaacgcttg atatacgctc acatagctat ctggtaaatt tacatattta
     5041 ccaacaatgc ctatgttcac attccctgaa aagttagtaa aagaatttgt tacttttttc
     5101 cattcagccc atctaatgtt ccgattttta agatcaagtt tgtcagagat tacatcaaca
     5161 attccttgat cttttaatat ttcaggaact tcataaatcg aagaacaatc atggcttgaa
     5221 ataacacatt gctctctgac gctagcaaac atggaaatct tgtgtcttgc ttctttattc
     5281 agtggctttt ggcatctgac tgcaagtata tgtggatgga ttccaatcct cctgagttcc
     5341 tgaacactgt gctgtgtggg ttttgtcttt tgttcaccaa ccacatccaa aattggagca
     5401 agtgttacat gaatgaatag agttttagta tcaccctctt ctaattccat ttgtctgaat
     5461 gactctaaaa atggcagact ttctatgtca cctactgttc caccacattc aacgactaaa
     5521 acatcgtaac ctttggctag tttctttaag ctattcttta taacatcagt aacatggggt
     5581 attatttgca cgcattgacc cagatacttg ccttctcttt ctgcccttat tacatctgaa
     5641 tagatccttc cggtagtaat attatgccat tttgtcatgg gtgtgttaag aaacctttca
     5701 tagtttccca tatccatgtc gcattccccg ccgtcatcag taacaaacac ctcgccatgt
     5761 gctgtgggat tcattgtacc tgcatcataa ttcacatacg gatcaatctt tgtgcaggtc
     5821 actcttaaac cagtcaattg caataacttt gcaacagaag aagcaactat tccttttcca
     5881 agacctgaca ttactcctcc agtgataaat atgaacttgg gaaatttgct gtcgggtttg
     5941 ctatgtctat gctgcacatt agagtttatt ttctcacctt tttaatcgtt ttctgaatat
     6001 ctggtcttgt aatttgaaag caagtccaag accagaaaca aagataaaat ctacaaaatc
     6061 ctgataacca gattaacaga ctagtttcag gcttgtccaa tatagcctac gttagcaaaa
     6121 aaaccaagga tggcgttcac gtactcattg tctttattaa gaatgtacat tgtatttgcc
     6181 attttttttt ctttgatcca ttcaatgctg cgtaaatcct taagatttcg tttaatatct
     6241 tctctcttca atccagtcct tttatggaga acataaatgg ttaccatttt attttcttcg
     6301 gccagggctt ttaatatctt gatttttcct atcgttccga ttccattttc tatgatggtc
     6361 ttgctatcat aatccattat tttttattta tctgctgttc taataaaggt tctaattcaa
     6421 ctaatgatgt tatgttcata cctatttctt ttagtgattt catttcaatt atttttctat
     6481 caagaagatc actcatacaa tcctcgaatt caaatttctt ggccttgtgt tcttctacta
     6541 gttcaagtgc ataggctcga atttccttta tctcgacata ttgttttttt ctcttacttt
     6601 gtacttttag tatggccatc agtgtaagca aatgattctt tggaagttct ttcaaatcct
     6661 ccattgtaat cgatggtctg ttgtgaccgt gcactttacg aatttgttct aatgttattc
     6721 tatcgctccc gttagcctct gccaaattcc ctgcatatag cagtagatca agagcatacc
     6781 taacgtctcc tccaacttga gatgatgttg taataagtga tacttcatca attatatcag
     6841 ttccgacaac tttaggatta aatgattctg aagatctggt aactagaata tcacctatct
     6901 gctcttcaga ataaggcaaa aattctattg gtattcttcc cagagtactt aattctgaac
     6961 tatcaatctt gtcatgaaaa tccgtactcc ttgctatgaa tatcacacca ataacgttac
     7021 agtgttttga cagatcaaat tcattgagcc gagtaaaatc gtagattata ccactatctt
     7081 tatttgagcg caacaagaat tcgatttcat ccaaaataat caatgtgtat aatttgttat
     7141 catacaggta agaaagaaga tatcttaaca tctcttccgc actaagtccc tgtgaaggca
     7201 attcaggagc aatcttttct agtagaaacc gataaactgc atatttattc cctccctgaa
     7261 gtttcaaatt tatgtaggca accttgagtg tcaatcccgc tttggcaaat tcactttcta
     7321 gcatgcctga aaattttatt atcgtggatg tttttcctat tcctgacctt cctactattt
     7381 gtggggtaga aaacaggaat tgctctggtt tgatgtagga gtctttgaac atcatcatta
     7441 acaatgacat ttctctttct ctgtggtgaa gctcatcggg tacgtatctt gctgacagct
     7501 ttgacctatc aaggaatatc ttactttctg acaattctca agtagattga tagcatgatc
     7561 ataatatatt tattaattaa ccttagcgaa ctcttcaact cttttaaggt atgttaagcg
     7621 ttacacggta tgccaagaat ttcatatttg gatttttctg ctgatgaccc agatcgtgcg
     7681 gtgaactttt acagtaaggt ctttggttgg caaatcaaca agtgggaggg tcccaaggaa
     7741 tattgggaga tcaaaacggg cgaaccaaac gagcctggaa tagatggagg gttatctaaa
     7801 cgtgaaagaa taggtgattg gacgacacct ttcataaatg ttccagctat agatcagtat
     7861 attgacaaga tagaatcaaa tggtggaaaa attattcaac ccaaaacatc gatacctagt
     7921 attggttaca cgctactcgt caaggacacc gaaagtaata caattggatt gttcgaggag
     7981 aataaagaag ccaaataaaa actgaaaaca aagaaatacc ttcatttttg gcttactaca
     8041 tctactgcag tttctaaagg taatttgaga ttacgttacc aatcatgacc tttctatttt
     8101 gtgatgatta ttcgtaaatt attttgttat gacggacttt ttgtattccc atttcataaa
     8161 ggtctaattc ctcattgagt ttagcgcaca aatcatctat tctaacgggt ttatgaagaa
     8221 accccttaat aatttgcttt tttgcaaaat ccttaaacat tgcatcatcc gtgttaaatg
     8281 cagtcatcag aatcatcctg gcatagggat tcaaagattt tgttttttta atcaattcca
     8341 ttccgttaag accaggcata ttcaggtcat atattaccat cgcataatca tctttgttaa
     8401 gtgtaaagtg ttctagtgcc aaccggatct gtaaaagtga aaattctaat attagcaata
     8461 tcggtcaaag cgtctttaaa gaggtctgtt atgtctggtt catcaccaac tattgaaacc
     8521 aatctgagac gactcgcgat acttctggca ctcttaatcc ttatctgcta taaacgactg
     8581 tacatcgaat aatggccgtt acaaatattt atgcttctaa ttgctcagta tagttgcatt
     8641 ttttgatcaa gatttccaag taattggcat ttctgtagct tcaaaatgtc atcaaatttt
     8701 taaactgtcg agactaaata ttacttgcac aattgtccct agaagtaaat gcccaaaccg
     8761 tgcaactatc accaattgat agaaagctct tgaaagttct actgtcaccg aatggagaaa
     8821 taaagtccac aaagaacata tcagaaaaat t
//
LOCUS       DASPFX010000273         3333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_441144, whole genome shotgun sequence.
ACCESSION   DASPFX010000273 DASPFX010000000
VERSION     DASPFX010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441144"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..865)
                     /locus_tag="VD694_05970"
     CDS             complement(<1..865)
                     /locus_tag="VD694_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12289.1"
                     /translation="MTTIPSLPPSSGINKSEILYGVENAVGRGVYFMSNVKQRMDIFF
                     DYRAPSIVVDIAEYRNGYIDIRRRGGKIRAFTEITKDNLRYCKELMKLVDELRHLDGV
                     RGGIAVSESEYMATTVLQEAKPLTQVIYSNVKEVVEQGKYIFDTLWNAAIPAEQKIRE
                     IEEGKIIYGTKLIENNPEEIVNQIAQMTANSNELATCLPSGGIQYSYNYFFDIKKRLL
                     EKQKQGKHKGIRYVTAIDKENIHLIKIYLESGIQIKHVTNLPPMSFGISDKQIAVTIE
                     KMEGGKSVQSLL"
     gene            complement(917..1318)
                     /locus_tag="VD694_05975"
     CDS             complement(917..1318)
                     /locus_tag="VD694_05975"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12290.1"
                     /translation="MGYTNHKKKKRILLVDDEIDITFSLKILLEENGFEIYTFNKPSS
                     VLRDFRAGLYDLIILDIKMPEINGFNLYKKIREIDNKVHVLFLTALSDFSNQEEPNEA
                     PLMLDEQNVILKPVDNKTLLEKIMTIQGMSK"
     gene            complement(1361..1828)
                     /locus_tag="VD694_05980"
     CDS             complement(1361..1828)
                     /locus_tag="VD694_05980"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HXW12291.1"
                     /translation="MQELATAIVNEYRQIIAKSNRNVKLEYRLKSGQGATNSLFIYAD
                     KVRMSQVLSNLLANAIKFTEEGRIVVTAEINDENKNSIVVSVQDSGAGIDSEIQPHLF
                     TKFASKSFQGTGLGLFISKSIIEAHGGEMWAENNSDGRGATFYFTLPMQKVKV"
     gene            complement(1901..2662)
                     /locus_tag="VD694_05985"
     CDS             complement(1901..2662)
                     /locus_tag="VD694_05985"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HXW12292.1"
                     /translation="MKDMVEQQHHVFEGLWNRAVPVRDKIAEVEEGKEAEFYEVINDY
                     KKAQEKYIDLARSVDREALLLLANSKSMVRAYRLGVLDYLIEASSKKGALVRIVCPLS
                     EENSEIVKTISERAPDIRILNYDNASSHSGLLIVDRAKLMRFELKEPKAEEFSKAIGF
                     IIYSNSKASVESSKSFFELLWNERIQQEKLKEYEKLKEADKMKTEFINVAAHELRTPV
                     QPIIGLAEILHSNNRLTPQENEYLDVIIRNGKRLQ"
     gene            complement(2659..3027)
                     /locus_tag="VD694_05990"
     CDS             complement(2659..3027)
                     /locus_tag="VD694_05990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12293.1"
                     /translation="MEVRKGQNSAWYPSGKFIMDIFSSVSKTICVCCNSKFPSQLLSL
                     EITKKTIAAKSSLIEQRYLIEVVKDNIASCRNLIEVVGRNNSNFRHSDEVEANFVVSE
                     KEYLGSIILRNLISRRYIVI"
BASE COUNT          914 a          680 c          518 g         1221 t
ORIGIN      
        1 tcaaaaggct ttgaacactt tttccaccct ccattttctc tattgttaca gctatctgct
       61 tatctgaaat cccaaagctc atggggggca gatttgttac atgttttatt tgtattcctg
      121 attcaagata tatcttgatt aaatggatgt tctctttatc tatggcagta acatacctta
      181 tgcctttgtg tttcccctgc ttttgtttct ctaatagtct tttcttgata tcaaaaaaat
      241 agttataact atactgtatt ccccctgaag gtagacaagt ggctaattcg tttgaattag
      301 cagtcatttg tgctatttgg ttaacgatct cctcaggatt attctctata agcttcgttc
      361 cataaattat ttttccctct tcaatttctc ttattttctg ctcagctggg atagcagcat
      421 tccataatgt gtcaaagatg tatttacctt gctctacaac ttctttgaca ttgctgtaaa
      481 tgacttgggt aaggggtttt gcttcctgaa gtacagtagt tgccatatac tctgattcac
      541 ttactgcgat tcctcccctg actccatcta aatgcctgag ctcatcaacc agtttcatta
      601 attctttgca atagcgtagg ttatccttgg taatctcagt aaaagctctt atttttccgc
      661 ctcttcttct aatatcgata tatccatttc tatattcagc aatatcaact acaatagagg
      721 gcgctctata gtcgaagaat atgtccatcc tttgttttac atttgacata aaataaacac
      781 ccctcccaac ggcattttct actccgtata atatctcaga tttgtttata ccagaactgg
      841 gtggcaggga tggaattgtg gtcacttctt caattcagca cgcaataact ctttataaac
      901 aaacgtctag agtgcattac ttagacattc cttgtattgt cattattttc tctaaaagcg
      961 tcttgttatc aactggtttt aggataacgt tctgttcgtc caacatgagc ggtgcttcgt
     1021 ttggttcttc ctggttcgaa aaatcgctga gtgctgtcaa aaatagcaca tgcaccttgt
     1081 tgtctatctc tctaatcttc ttgtagaggt tgaagccatt tatttctggc attttgatat
     1141 ctaaaattat caggtcatac agaccagctc taaaatctct aaggacagaa gacggtttgt
     1201 taaatgtata aatctcgaag ccgttttcct ctaaaagaat ttttaatgaa aaggtaatgt
     1261 ctatctcgtc atccactagc aatatccttt tctttttttt atggtttgtg tatcccattt
     1321 ttttatggtt cagccgtgta gttcatgctg gaacttgttg tcacaccttt actttttgca
     1381 ttggcaatgt gaagtaaaag gttgcgcctc ttccatctga gttattttca gcccacattt
     1441 caccgccatg agcttcgatt atactcttag aaatgaataa ccccaagcca gttccttgaa
     1501 aagatttaga agcaaacttt gtaaataagt gaggttgtat ctcagaatcg ataccagctc
     1561 cgctatcctg aacacttaca actattgagt ttttgttctc atcatttatt tctgcagtga
     1621 caacaattct tccttcttca gtaaatttaa tagcgtttgc cagtaaatta gaaagaactt
     1681 gtgacattct tactttgtct gcgtatatga aaagagagtt ggtggctcct tgccctgact
     1741 tgagcctgta ttctaatttc acattcctat tagatttcgc aataatttgt ctgtattcgt
     1801 ttacaatagc tgtcgctagc tcctgcaagt caaacccttc attttttagt ttcagagatt
     1861 ggctctcgat ttttgtaaca tctaatatgt catctgcaag ctattgcaac cgttttccgt
     1921 ttctaattat gacatctaaa tactcattct cttgtggtgt cagtctattg ttagaatgga
     1981 gaatttcggc taatccaata ataggttgta caggcgttcg cagctcatga gcagccacat
     2041 taataaattc agttttcatc ttatctgctt ctttgagttt ttcgtattct ttcagtttct
     2101 cttgctgtat gcgttcattc caaagcagtt caaaaaatga cttggaggat tctacactag
     2161 ctttgctgtt tgaatatatt ataaatccga tagcctttga aaactcttca gcctttggtt
     2221 ctttgagctc aaacctcata agctttgctc tatctactat caagagacca gaatgagaac
     2281 tagcattatc ataatttaga attctaatat caggtgccct ctcagaaatc gttttaacta
     2341 tttctgaatt ctcttctgat aatggacaaa caattcttac tagtgcgcct tttttagaag
     2401 aggcttctat caaataatct aaaactccca acctatacgc tctcaccata gacttactat
     2461 tggcaagtaa tagtagagct tccctatcta ccgaccttgc caggtcaatg tacttttcct
     2521 gtgctttttt gtaatcatta ataacttcat aaaattcagc ttcttttcct tcctcaactt
     2581 ctgctatttt atctcgtact ggaactgctc tattccaaag accttcaaag acatgatgtt
     2641 gctgttccac catatctttc atattactat atatcgcctg ctgattaggt tccttaaaat
     2701 tatagaacct aggtattctt tttcgcttac tacaaaatta gcttcaactt catctgaatg
     2761 tcgaaagttt gaattattcc tgcctactac ttctataaga tttctacaag atgcaatatt
     2821 gtctttaacg acttcaataa gatatctttg ctctattaga ctacttttgg cagctatagt
     2881 tttctttgtt atttctagtg aaaggagctg cgacggaaac ttggaattac agcaaacaca
     2941 tattgtcttg cttacagatg aaaaaatgtc cataatgaat ttaccacttg ggtaccatgc
     3001 actattttgg ccctttctga cctccaaatt tgcaactaac tagttaattg actacaaatt
     3061 ataaaggatt tggtctgtaa ggtaagaaat cctgccaact tttagaaata aatttaaaat
     3121 atatcggttc ttggaattaa accatggcag aaataatgtt tgataactat cgattctagg
     3181 agagaatatt tcaaataaca cttgagatat tgaccgaaga aaatagccgt aaatcgaaat
     3241 tatcctttgt ctaaatgagc ccttaacatc catgccattt tttcatgttt ttccattaat
     3301 ccgatcaaga agtcgtttgt acccatatcg tga
//
LOCUS       DASPFX010000274         4684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_59505, whole genome shotgun sequence.
ACCESSION   DASPFX010000274 DASPFX010000000
VERSION     DASPFX010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4684
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59505"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VD694_05995"
     CDS             complement(<1..245)
                     /locus_tag="VD694_05995"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12294.1"
                     /translation="MFTSILVPVDGSDNSYRALDSALLLSEKLGSNITVVNMLEQVPI
                     THIESEKLLSELLEAYRKENQEILSKCSKIATEKGLR"
     gene            complement(404..736)
                     /locus_tag="VD694_06000"
     CDS             complement(404..736)
                     /locus_tag="VD694_06000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12295.1"
                     /translation="MNKKQPMKSKFLFASLLTILFGASFAVVGPQVYADIWDDDDTME
                     ELVKDIDSGKDNDDTMDWDEFKNSKIYTQEDVETQICIENRQDLSNNLADYEVVRCFE
                     DSDYAYDN"
     gene            complement(1065..2381)
                     /gene="glyA"
                     /locus_tag="VD694_06005"
     CDS             complement(1065..2381)
                     /gene="glyA"
                     /locus_tag="VD694_06005"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HXW12296.1"
                     /translation="MDAKESYYKVFDLVEKHHKWFKSSIPLIASENIPSPAVREAIVS
                     DFGNRYAEGWPGERVYAGCIYIDEVELICNELAKRVFKSEFADCRATSGVVANLAIYS
                     AFSNPGDHMLAASIPSGGHISHGKKEHSGTAGLVHGLNIEHYPFSKEDMTIDVDATKK
                     KVDEMIANGKKPAIAMFGGSLFLFPHPVKELAPFMHDNDIYVNYDGAHVAGLIAGGEF
                     QDPIGEGSDSMTMSSHKTLWGPQGGIIVSQEKYADNIKKAIFPGNTSSHHLHHVAGKA
                     IALAESLEFGKEYARQVIKNAKTLAESLANFGFTVLGEKRGYTESHQLAVDVSKFGDG
                     GTIEKELEKANIILNRQLLPGDIKSGKHYMHPSGVRIGVPEVTRLGMKESEMKEIASF
                     IKQMVIDKSDPKQVANSVSRFREQFQKVQYAFENSTDAYEYIRIRT"
     gene            2527..2694
                     /locus_tag="VD694_06010"
     CDS             2527..2694
                     /locus_tag="VD694_06010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12297.1"
                     /translation="MDKNDLKCALCGNTLTFRYKSMEEWNISGYLCGICYEKKLTEFY
                     ISPDRKDIVKR"
     gene            complement(2787..3230)
                     /gene="rpsI"
                     /locus_tag="VD694_06015"
     CDS             complement(2787..3230)
                     /gene="rpsI"
                     /locus_tag="VD694_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HXW12298.1"
                     /translation="MNKIDLYPGQRKSSRAVATISKGTGKVRINNIPAELINSEVARE
                     LVLVPLKLIGEYRDKVDISVKVHGGGFMGQAFASTVSICRALTGAGKGGRDPKDHPFA
                     KSVRTEIRKRITEFDRHLLSGDPRQTESKKFGGSGARRRKQKSYR"
     gene            complement(3223..3705)
                     /locus_tag="VD694_06020"
     CDS             complement(3223..3705)
                     /locus_tag="VD694_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HXW12299.1"
                     /translation="MAKQITEQKQESNQIITVDAKDCIAGRMCSHISKLLLKGHHVRV
                     VNAEKSMISGNRYKTIEIYKEYLEIASNTNPIHGPFHPRKPDRIITRMVRGMLPKRKS
                     SGLTALKRLRVYISIPPELKNTKLETFEDSKIRKPASYFITLGELSKQIGWNGLDNYE
                     "
     gene            complement(3698..4045)
                     /locus_tag="VD694_06025"
     CDS             complement(3698..4045)
                     /locus_tag="VD694_06025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18e"
                     /protein_id="HXW12300.1"
                     /translation="MFPDTLNNTIWTLRSAIKKNKVPIWKAVLKELSRSRSNRRQVNI
                     GQLAHVTKDKEVVIVPGKILGSGEIGHKLTIWCLGISEAAASKVLDSGGKILALDSLI
                     KKYPDGKGVRIIG"
     gene            complement(4087..>4684)
                     /locus_tag="VD694_06030"
     CDS             complement(4087..>4684)
                     /locus_tag="VD694_06030"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit D"
                     /protein_id="HXW12301.1"
                     /translation="SDIPRQYVNALRRLSISQVPTFAIDDVVILENSSVMHDEAIAHR
                     LGLIPLRTDLERFVMPHACDCKSTLGCSKCRVLLVLDAESQDKTKVITSADLISEDDV
                     VKPVHSEIPIVSLAPGQKLKFEAYARLGTGKSHAKWQPTSVAVVKDSKKEEGSILVIE
                     SNGALTPEEIVIEAAKILGSKIKDFDSVIQSLSLPKNI"
BASE COUNT         1344 a          920 c          750 g         1670 t
ORIGIN      
        1 atccttaatc ctttttcagt agcaatcttt gaacactttg atagtatttc ttgattttct
       61 tttctatagg cttctagtaa ttcgcttaac agtttttctg attcaatatg agttattgga
      121 acttgttcca acatgtttac tacagtaata tttgaaccca atttttctga aagcagcaat
      181 gctgaatcta gggccctgta ggaattatcc gaaccatcaa caggaactag gatacttgta
      241 aacacgagag atcattaatt gacttgtgtc taatatatgt aacatctatt cctaactaat
      301 ttcaaattca aagttaaaag ttctatacca taagttagta aattatcaat caatgtgggt
      361 aatgtaaaag aaaagaaatt aaaagcggga ctatttgtgg atgctaatta tcatatgcat
      421 aatctgaatc ttcaaagcat ctaaccactt catagtcagc tagattattt gaaagatcct
      481 gtctgttttc tatacatatt tgtgtttcaa catcttcttg tgtgtagatt tttgaatttt
      541 tgaattcgtc ccaatccatt gtatcgtcgt tatcttttcc actgtcaata tcttttacga
      601 gttcttccat agtgtcgtca tcgtcccaga tatcggcata tacttggggg cccactacag
      661 caaatgaggc tccaaataaa atggttaaca acgaagcaaa caaaaacttg cttttcattg
      721 gttgtttctt gttcattggt tctatgggtt aggctcatca taaataaatt aatacattat
      781 aataatcata tttaatatat tatttataaa taattattgt aaatcataac aattactata
      841 caatttattt acttttatct gttaatttaa taaaatattt tctatgatat attacttgtc
      901 ataatacaag attagatgtt ttattgcgaa ttttactata gccgctagaa tttgtcgatc
      961 ttacaggcaa ttagtcaata aagttaagct tgaagtaaaa tattttgaac aaaattcaga
     1021 atagaatgat agcaagcaat gttaatggta attcagtatt gtaatcaagt tcttattctt
     1081 atgtattcat aagcatctgt agagttttca aaagcatatt gtactttttg aaattgttca
     1141 cggaacctag atactgaatt agcaacttgc tttggatccg acttgtctat taccatttgt
     1201 ttgataaacg atgcaatctc tttcatttca ctttctttca ttcccaatct agttacttca
     1261 ggtactccaa ttctaactcc acttgggtgc atgtaatgtt taccagattt gatatcacca
     1321 ggtaagagct gtctgttaag aataatattg gctttttcta attctttttc tatagttcca
     1381 ccatctccaa atttggaaac atctacggcc aattggtgcg attctgtata accacgtttt
     1441 tctcctaaaa ctgtaaaacc aaaatttgca agtgattcgg caagtgtttt tgcgtttttt
     1501 atgacttgtc ttgcatattc ctttccaaat tccaatgatt ctgctaaggc tatcgctttt
     1561 cctgccacat ggtgtagatg atgactactt gtattacctg gaaagatggc tttcttgatg
     1621 ttatctgcat atttttcttg tgagacaata attcctcctt gtggacccca tagagtcttg
     1681 tgggagctca tagtcatgga atccgaacct tctccaattg gatcttggaa ttctcctcct
     1741 gctatcaatc ctgccacatg agctccatca taattgacgt aaatatcatt atcatgcata
     1801 aaaggtgcca attcttttac tggatgagga aaaagaaaca aacttcctcc gaacattgca
     1861 attgcaggtt tcttaccatt tgcaatcatt tcatcgactt ttttcttggt ggcatctaca
     1921 tcgattgtca tatcctcctt tgagaaggga taatgttcta tgttgaggcc gtgaacgaga
     1981 cctgcagttc cagaatgttc ctttttacca tgagaaatat gtcctccact ggggatagat
     2041 gccgctagca tatgatctcc tggattagaa aaagctgaat aaattgcaag atttgcgaca
     2101 acacctgaag tagcccgaca atcggcaaat tcggatttga acaccctttt tgctaactca
     2161 ttgcagatta gttctacttc atcaatgtag atacagccgg cgtaaaccct ttcaccaggc
     2221 caaccttcgg cgtatctatt tccgaagtct gaaactatgg cttcccttac cgcaggacta
     2281 ggaatatttt cgcttgcaat caatggaata gaagacttga accacttgtg atgtttttca
     2341 acaagatcaa ataccttata atatgattct ttagcgtcca ttgtgatatt tatggtgact
     2401 ttaagttcct aatttaaaat attgcttgtc attttgaatc tgtttttgcg tgttcttgtt
     2461 ggctgagact gccttcatct atattttttc acaactttta atttactcta gattagaccc
     2521 atattgatgg acaaaaatga tcttaaatgt gccttgtgtg gtaacacgtt aacttttaga
     2581 tacaagtcta tggaagagtg gaacatttca ggatatcttt gtggcatatg ttatgagaaa
     2641 aagttaactg aattttatat ttctccagat cgtaaagata tcgtgaaaag ataaggatag
     2701 cactagaaaa aatagatcta atcctgatag atttacattt ctgatttggc tttcactagt
     2761 acgtttgaaa taaaaaaata gaaaatctaa cggtacgatt tttgttttct acgcctagct
     2821 ccagacccgc cgaacttctt tgattctgtc tgtctggggt cgcctgatag caaatgccta
     2881 tcaaattctg ttattctttt acgaatttcc gtacgaacgc tttttgcgaa tggatggtct
     2941 tttggatctc taccgccctt gccggcaccg gtcagagctc gacaaataga aacagtactt
     3001 gcaaacgctt gtcccatgaa accgccaccg tgaaccttta cactaatatc tactttatct
     3061 ctatattcgc caatcaattt taggggaaca agtaccaatt ctctcgctac ttcagaattt
     3121 atcaattcgg ctggtatatt gttgattcta actttccctg ttccttttga tattgtggcc
     3181 acagctctac ttgactttct ctgaccagga taaagatcta tcttattcat aattgtctaa
     3241 cccgttccaa cctatttgtt ttgataattc gccgagtgta ataaagtatg acgctggttt
     3301 cctaattttg gaatcttcaa atgtttcaag ttttgtattc ttgagttcag gcggtattga
     3361 gatataaact ctcaacctct ttaaagctgt caggccacta gatttccttt ttggtagcat
     3421 acctctaacc atccttgtaa taatcctgtc aggttttctt ggatgaaatg gtccatgtat
     3481 gggatttgta ttagatgcga tttctagata ttctttatag atttcaatag ttttgtatct
     3541 atttcctgaa atcatacttt tttctgcatt tactactctg acatgatgtc ctttgagcaa
     3601 aagttttgaa atatgagagc acattctccc agcgatgcaa tccttcgcat caaccgtaat
     3661 aatctgatta gattcttgtt tttgctcagt aatttgctta gccaattatt cttaccccct
     3721 taccgtctgg atatttcttt atcaagctat caagggcgag tatttttccg cctgaatcaa
     3781 gtactttact tgcagcagct tctgaaatac caagacacca aattgtaagc ttgtgaccta
     3841 tttcaccaga acccaatatc ttaccaggta ctattacaac ttctttatct ttagtaacgt
     3901 gagctaactg accaatgtta acttgccttc tgttggatct tgacctagaa agctctttta
     3961 atacagcttt ccatatcgga accttattct tctttattgc acttcttaga gtccaaatcg
     4021 tattgttcaa tgtatcagga aacatgaaat attctcgcta tccctaaacc ccaaataaat
     4081 ctatacctaa atattctttg gcaatgatag tgattgaata acactatcaa aatctttgat
     4141 ttttgatccg agtatttttg ctgcctctat gactatctct tctggtgtca atgcgccatt
     4201 ggattctatt acaagtatgg aaccttcttc tttcttacta tcttttacaa cagccactga
     4261 cgttggctgc cactttgcat gggatttccc agtccctagc cttgcatatg cctcaaactt
     4321 taatttttga cctggagcta aggatactat tggtatttca ctatgcactg gtttaacaac
     4381 atcgtcctcg gatatcagat ctgcagaagt aattaccttc gtcttatctt gagattcagc
     4441 atctaaaacc aacaatactc tacactttga acaaccaagc gtgcttttac aatcacaagc
     4501 atgaggcatt acaaaccttt caagatctgt ccgtaatgga ataagcccta gtctatgggc
     4561 gatagcctca tcatgcatta cagacgagtt ttcaagtatt actacatcat caattgcaaa
     4621 agtaggaact tgactgatag ataacctcct taatgcattg acatattgtc ttggaatgtc
     4681 acta
//
LOCUS       DASPFX010000275         2223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_915582, whole genome shotgun sequence.
ACCESSION   DASPFX010000275 DASPFX010000000
VERSION     DASPFX010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915582"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VD694_06035"
     CDS             <1..382
                     /locus_tag="VD694_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HXW12302.1"
                     /translation="GFLIGWLVFLWTPPHFWSFAIKSREEYASVKVPMLPVLIGNEKT
                     AGYIFANTAILLPYSLSLYLLGLGVVYFITAAISGSLMLIYHYKLTRDPTPDFAWKAY
                     KITAPYLVVIFISLAFDSLYYYRF"
     gene            complement(441..722)
                     /locus_tag="VD694_06040"
     CDS             complement(441..722)
                     /locus_tag="VD694_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 1-beta"
                     /protein_id="HXW12303.1"
                     /translation="MSKLVARIKILPSESDSDIDSIPKILKETLPESFKLLAHKKEPI
                     AFGLYSVLADFTLEDSEGQMELLEESIRKLEAVGEIEVINVSRQSVNIK"
     gene            complement(725..949)
                     /locus_tag="VD694_06045"
     CDS             complement(725..949)
                     /locus_tag="VD694_06045"
                     /inference="COORDINATES: protein motif:HMM:NF011481.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HXW12304.1"
                     /translation="MIQARYKFGLMFVLSVSKSLQLPICTSCSRPIIANDECVKYYCP
                     NCGYVLIWRCQSCRQFARSYKCIGCGFEGP"
     gene            complement(1000..2175)
                     /locus_tag="VD694_06050"
     CDS             complement(1000..2175)
                     /locus_tag="VD694_06050"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HXW12305.1"
                     /translation="MENCDVLIAGGSVAGLATARECSSNGPSTIVIEEDHEIGTPEHC
                     GGMVSLGGLQKLGIIVDSNNFQNAVSMAKISSNSSSFELPAEKQNVIVVDRRGLDKQI
                     AKQAQSAGAEIRTRCSFKGITKNRSSYVVKTSDGEIECKYFVDAKGLSSLKDATNNGI
                     LASAQFEIYANWIDGKTVEILFDAVKYPGFFVWIIPTGEGKGKVGVAGKGINTLVALN
                     EFIKSRGEKFSIIRKIYAPIWIGGPRPPFIKERVLVVGDAAGQTKPTTAGGIFSCGMA
                     GILAGKAIAKAIATQDNGCLYDYEKTWKSMFWREFNSMLLARKVLERLDNKSIDSIFS
                     SISKMAINQVSNFSDFDFHSSALDLFLKSKIASNLTKILIGNEFRRVFNTNKDVQNT"
BASE COUNT          630 a          460 c          372 g          761 t
ORIGIN      
        1 agggttcttg ataggatggt tggtattttt gtggacaccg cctcattttt ggtcttttgc
       61 tataaaatca agggaggagt acgcaagtgt aaaagttcca atgttacctg ttcttatagg
      121 taatgaaaaa acagcgggct atatttttgc aaacactgca atcctgttac catattcgtt
      181 atctttgtac cttctcggtt tgggggtagt ctattttatc actgctgcaa tttcaggttc
      241 gttgatgtta atttaccatt acaaattgac aagggatcca actcctgact ttgcatggaa
      301 ggcttacaag ataacagcgc cttatttggt tgttatattt atctcactgg cgtttgattc
      361 actttactat tatcgatttt gataaaacta gttcaagtca aattactgtt cataaaaata
      421 agaactgacg acagctgatt ctacttaata ttgactgatt gtctactaac gtttattact
      481 tctatttcgc ctactgcctc taattttctt attgattctt ccaataactc catctgacct
      541 tcagagtctt ctagggtgaa atctgctaaa acagaatata acccaaaggc aattggttct
      601 tttttatgtg ctaataattt gaacgattct ggaagcgttt ctttcagaat ttttgggatc
      661 gaatctatat ctgaatctga ttcggaagga agtatcttga ttctcgcgac taatttgctc
      721 attattatgg accttcaaac ccacatccga tgcatttgta tgatctagca aattgtctgc
      781 aactttgaca tctccatatt aatacatagc cacaattagg gcagtaatat ttcacacatt
      841 cgtcgtttgc gattattggt cggctgcaag aagtacaaat tggtaattgt aatgattttg
      901 acacagagag cacaaacatt aatccgaatt tatatcttgc ttggatcatt gaacatgaag
      961 tgtgctgtcg acatctcaag tttaaaacgc aagttggaac taggtattct gaacatcctt
     1021 attggtattg aaaactctcc gaaattcatt accaatcaaa attttggtca aattactcgc
     1081 tatctttgat ttaagaaaaa gatcaagagc acttgaatga aaatcaaagt cagaaaaatt
     1141 ggaaacttga ttaattgcca tttttgatat tgacgagaat attgaatcga ttgacttgtt
     1201 atccaatctt tccaatacct tccttgcaag caacatggag ttaaattccc tccaaaacat
     1261 ggatttccaa gtcttttcat aatcatacag gcatccatta tcctgagttg ctatagcctt
     1321 tgcgattgct ttacctgcca ggatacctgc cattccacaa ctaaaaatac ccccagctgt
     1381 cgttggttta gtctgtccag cggcgtcccc aaccacaaga actctttctt ttatgaaagg
     1441 tggtcttggt cctccaatcc aaattggagc atagattttc ctgattatgg aaaatttctc
     1501 tcctctggat ttaatgaact cgttcagtgc gactagcgtg tttatgcctt ttcctgctac
     1561 tcctaccttg ccttttcctt caccagttgg aattatccag acaaaaaagc cggggtattt
     1621 tacagcatca aataatattt ctaccgtctt accatcaatc caatttgcat atatttcaaa
     1681 ttgagcagaa gctaaaattc cgttattagt agcatccttt agagagctta gcccttttgc
     1741 atcaacaaag tacttgcatt caatttctcc gtccgatgtc tttacaacat aggaggatcg
     1801 atttttagtg atacctttga atgaacatct agtccgtatt tcagcacctg cgctttgcgc
     1861 ctgtttagca atttgtttat ccagtcccct gcgatctact actatgacat tttgtttttc
     1921 ggcaggtaat tcaaaacttg aggaatttga acttatttta gccatagaca cggcattttg
     1981 aaagttatta gagtcaacta tgatgcctaa cttttgcaga ccaccgaggc taaccatccc
     2041 cccacaatgt tctggtgttc caatttcatg atcctcttcg ataactattg tggatggtcc
     2101 atttgaagaa cactctcttg cagttgcaag tcctgctaca ctcccacccg caattaaaac
     2161 atcacagttt tccatgccta taaggaaaca attatttcat cattttatta actaacctgt
     2221 agt
//
LOCUS       DASPFX010000276         4076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_69527, whole genome shotgun sequence.
ACCESSION   DASPFX010000276 DASPFX010000000
VERSION     DASPFX010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69527"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..977
                     /locus_tag="VD694_06055"
     CDS             <1..977
                     /locus_tag="VD694_06055"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HXW12306.1"
                     /translation="GKHFLTLFIIAPHNLSANVSTAIDEQRYFSIFIIATIAAVAIGI
                     SFIIFKWNSKLQSLVDSRTQELRNSNKSLVESNKRLDLANRQLELHDKMQKEFINVAA
                     HELRTPIQPIIGLTEILQSKIKDNDQLNILNTVVRNSRRLHQLTEDILDVTRIEGHTL
                     RFNREPCNINDIVKAVVEDYVAQIEKGRTKHELVIEYKSKGDNIIADVDKGRISQVVS
                     NLINNAIKFTSNGTITVTTEIIDKTSSKEALVSVKDSGIGIDPEITQKLFSKFVTKSF
                     SGTGLGLFISKNIIEAHGGRIWAVNNNSDGREEKGATFYFTLPLATHT"
     gene            complement(1288..1461)
                     /locus_tag="VD694_06060"
     CDS             complement(1288..1461)
                     /locus_tag="VD694_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12307.1"
                     /translation="MKAASPLDRGQKNRIFDSHLVERFEYEIQINEDAGIPELKRARK
                     LDIGIHDDGNTRI"
     gene            complement(1510..1755)
                     /locus_tag="VD694_06065"
     CDS             complement(1510..1755)
                     /locus_tag="VD694_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12308.1"
                     /translation="MQIDCIEWVLEKIEVNKVPNDRLDGLIQKMIKSLENKKGQSHEK
                     TRHGRPWTRIETLQGVLYVIFAIRNERMVVILGITGG"
     gene            complement(1926..2393)
                     /locus_tag="VD694_06070"
     CDS             complement(1926..2393)
                     /locus_tag="VD694_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HXW12309.1"
                     /translation="MKIISAIPGAPSMSKEDVNKFLESKLLLQIGTIDDEGDPNIQPV
                     WFDYDKDREKLLIITPKIAKKIRNLRSKPNVYFSIDDENFPYKGVKGKGTTAIIEDPI
                     RTVPLGEKINMKYLGTLDHPIPKMILDSAKKGNHVVVEISPRFFSTWDFAKMQ"
     gene            2574..2705
                     /locus_tag="VD694_06075"
     CDS             2574..2705
                     /locus_tag="VD694_06075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12310.1"
                     /translation="MEPKKGDEHLHHPVCEVCQKEFDDVHELSKHVNEEHRNQDRAA"
     gene            3348..3818
                     /locus_tag="VD694_06080"
     CDS             3348..3818
                     /locus_tag="VD694_06080"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12311.1"
                     /translation="MNNSAAFLPLTRHQEERKKRIMTVDDEADVVFSLREFLQETGLF
                     EVDGFTDPLRALSYFRPGKYDLVLLDIRMPQMNGLELYRKIKQLDKNVDICFLTAVSN
                     FSEYRQVYPDITDEIEKDKDSCVIDKPADTEQLMKKIDKVIGRRIRKQSKAAEA"
     gene            complement(3862..>4076)
                     /locus_tag="VD694_06085"
     CDS             complement(3862..>4076)
                     /locus_tag="VD694_06085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12312.1"
                     /translation="FLIALAMAITTPKCLDIQLPGGGKINNCAEGVSNLTPDSIPTIP
                     DPVSEGEPTPARTPAPSIQPEIGTPN"
BASE COUNT         1380 a          703 c          730 g         1263 t
ORIGIN      
        1 atggaaagca ttttctgact ttattcatta tcgctcccca taatctgtca gccaatgtta
       61 gcacggcgat tgacgaacaa agatacttta gcatattcat tattgcaaca atagctgcag
      121 tagcaatagg aatttcattt ataatattca aatggaatag taaattgcaa agtcttgtag
      181 attcaagaac acaagaacta cgtaattcaa acaaatcttt agttgaatca aacaagagat
      241 tagatttagc aaacaggcaa ttagaattac atgataaaat gcagaaagaa tttatcaacg
      301 tggccgctca tgaattacga acaccgatac aacccataat tggattaact gaaatattac
      361 agtcaaagat aaaggataac gaccaactta atatccttaa tacagtagtt agaaactcaa
      421 gaagactgca tcaacttacc gaagatatac ttgacgttac aagaattgaa ggtcatacac
      481 ttcgattcaa tagggagcca tgcaatatta atgatatagt gaaagcagtc gtcgaggatt
      541 acgtagccca aattgaaaaa ggtagaacta aacacgaatt agtaattgaa tacaagtcta
      601 agggagataa tattattgcc gatgtggata agggaagaat ttcccaagtt gtttctaatt
      661 tgataaacaa tgcgataaag ttcacgtcaa acggaaccat aactgtgaca acagaaatta
      721 tagataaaac cagcagcaag gaggcgctgg taagtgttaa agactctgga atcggaatag
      781 accccgaaat aactcagaag ttattttcaa aatttgtgac aaaatctttc tcaggaacag
      841 gattaggctt atttatatca aaaaatatca tagaagcaca cggcggcaga atctgggccg
      901 tcaacaacaa tagcgatgga agagaagaaa aaggagcaac attttacttc acattaccac
      961 tcgccactca tacctagaga aatatttgac gattgggatt tcagaactaa caagactaat
     1021 caatcaaatt atcaaagaaa ccatttaaaa ttagcctctg gcagggttac tatagacata
     1081 ccaataaaca aaatagtgaa acttcagtga ataagagtcc ctaaaatatc gaactcaact
     1141 gaagtgctat ggtaatacct gaaaatacat gataacatag ataatatgaa ggaaataatg
     1201 ataccaaact tggtaataga tggtaatagc tataaaccat ctctgagggg aactacaagt
     1261 aaagagggat ctgaactttt cttctcttta aattcgagta tttccatcat catgaattcc
     1321 gatgtcgagt tttctagcac gttttaattc aggaatgccc gcatcttcgt tgatctgtat
     1381 ttcatactca aaccgttcca ctagatggga atcaaatatc cgattttttt ggcctctatc
     1441 taatgggcta gcggctttca ttattggtca actagactaa tacagtgaca gatatgtata
     1501 aggattatct tatcctcctg taatacctaa aattacaacc attctttcat tccttattgc
     1561 aaatataaca tacaaaaccc cttgaagagt ttcaatcctt gtccaaggtc gtccgtgtct
     1621 ggtcttctca tggctttgtc ctttcttatt ttcaagactt ttaatcattt tttgaataag
     1681 accgtctaat ctatcatttg gaaccttgtt tacttctatc ttttcaagaa cccattctat
     1741 gcaatctatc tgcaattgca tatcgtgatt gaatcttgca ctatgttctg gatggatttg
     1801 tttctttctt ttggctatct ttgtacgtag aaattctctc agtttgtctg aatctgaatg
     1861 ataaccacaa ataaaattga agattagaag ataataagga tcgatttatg ctgcaagact
     1921 gaaccttatt gcattttagc aaaatcccag gtagaaaaga accttgggct aatttcaaca
     1981 actacgtggt ttcccttttt tgcactgtcc aatatcattt taggtatggg atgatccaac
     2041 gtgccaagat atttcatatt tattttctct cctaagggaa cagttcttat tggatcttct
     2101 attattgcag tagtcccctt tcctttgact cctttatatg gaaagttctc atcatctata
     2161 gaaaaatata cattgggctt gcttcttagg tttctaatct tctttgctat tttaggtgta
     2221 attatcaaaa gtttttctct atctttatca tagtcaaacc atacaggttg aatattagga
     2281 tcgccttcat cgtcaatggt tccaatctgt aagagtagtt tgctttcaag gaatttgttt
     2341 acgtcttctt tactcataga aggtgcgcca ggaatggcac tgatgatctt cacattactt
     2401 atctaaaagg catacacaaa agagtttctg taactatgaa aacaacacta caattagcct
     2461 aattactagg atggaagagc tacaagagtt acaaacaaag tatacttgtt cagtattatt
     2521 atttcttaaa aaagacttta atcctattac caatattatc aatattatca aacatggaac
     2581 caaaaaaagg agatgaacat ctgcatcatc cagtctgtga ggtttgtcag aaggaatttg
     2641 atgacgttca tgaattaagt aaacatgtaa atgaagaaca tagaaatcaa gacagagcgg
     2701 cgtaagataa aatagttacg atgaagactg tgttctatat ttgtcaagtt ctccgctatt
     2761 gaaatatggt tattacgaag ggtgtaacaa taatcctaac aagtaagtgg gacgattagt
     2821 aaatcccgat tttgatttga gaatctacgg ataattcact ttgcgctttc atttgtctcc
     2881 catattccaa aagcattatt ttctgtatca agacagatcg caaagtaacc cattcctgga
     2941 actgccgttt ttggaacatg gactttgcct cccaattgct gcactttaga ggaacattag
     3001 tctactgatt ttacgtcaat gtgattaatg attggttatt gatcataact cagattgatg
     3061 agggagtaga tttcgtttta tatacttcat atttttggtg tgcttcatac tttaacttcg
     3121 gcgcaatgtc aattattagg tgctcagttt gttacaatag ccgcataaat aactacaaat
     3181 atcagttggt gaatagattt gagtggcatg gtattgtaga ttactccatt aaaagttgat
     3241 actcttatca gaaatatcca ttttgggtaa attttactaa aggtcctggt tgttattaaa
     3301 tgctaaaaaa actccattat taagaaatgt tgttcaaagt cacgaagatg aacaattctg
     3361 ctgcgtttct cccgcttaca cgacaccaag aggaaagaaa aaaaagaatc atgacagttg
     3421 atgacgaagc ggatgttgta ttcagtctac gtgaattttt acaagaaacc ggactatttg
     3481 aagtcgatgg gtttacagat cctctacgtg cactatctta tttcagacca ggtaagtatg
     3541 atcttgtatt attggatatc agaatgcccc aaatgaatgg ccttgaatta tacagaaaaa
     3601 taaaacagtt agacaaaaat gttgacatat gttttcttac tgccgttagt aattttagtg
     3661 agtaccggca ggtctatcct gatataactg atgaaataga aaaggataaa gattcatgcg
     3721 ttattgataa gcctgcagac actgaacaac tcatgaagaa aatagataaa gtaataggta
     3781 ggcgaattag aaaacaaagt aaggctgccg aagcatgagt aaagaatttt agatttatta
     3841 ataaacttaa atatgataac ctcaatttgg cgtgccgatt tccggttgga tgctaggagc
     3901 aggagtacga gcaggagtcg gctcaccctc ggaaacagga tcaggtatag tcggaatgct
     3961 atctggtgtt aaattagaga caccttctgc acaattgtta atcttccctc ctcctggaag
     4021 ttgaatatct agacatttag gagtggttat ggccatcgct agtgctatta gaaaag
//
LOCUS       DASPFX010000277         3503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1154732, whole genome shotgun sequence.
ACCESSION   DASPFX010000277 DASPFX010000000
VERSION     DASPFX010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3503
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1154732"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VD694_06090"
     CDS             <1..456
                     /locus_tag="VD694_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12313.1"
                     /translation="IAYFLAPLIVDNFLKGKEENNNRYFIIAGLLLSIAVVQLQFLVM
                     IFFILIVFSLIDFQRIRKSIIGLFIIFSVTFLITFSPVFLPQVLSNMSEVPFNVNQLL
                     TYRALARASDFAESFRMLGYEQQPFSYLNLGTSRDLLESNEGIIPSWIF"
     gene            760..2865
                     /locus_tag="VD694_06095"
     CDS             760..2865
                     /locus_tag="VD694_06095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12314.1"
                     /translation="MIVVSNGYPLLLGNFAGYLQTYEFPIEYNTLYEKINSDPKNNVL
                     ILPYINAIRYDNLSLRGLDPLVIHTPTMIFPVLLGNREAPTMGISIWLLSAMKENMTD
                     NLGKVLSGFGIKYVILRNDFVSYYPNYTPLSSLPLFREKWDTPLEPILDSQNDLKVIS
                     NNPQYKIYENQNNVSKIFVPVTTGGGLSDYDSLLLLSNVTSLSNVALYPTVSDRDSLA
                     FIDDKREVNMSKDDFVDISKYATSFNAKKGWVDSIKSFAYDHIMTSRVNQGLFSDSPN
                     SEVSFELPNAYKNKQVEIWMKALTWEQGGKINVHIDGTNHTVPSISPARSFQLFKIFE
                     GLSDKPYHISIQNSQGRNYVEGFYIKEVKSPLNNSTNKVFLTNLDEDLGPNLVANSGF
                     ALVNNQTNLPLYWNDSLNKCGDTFTCKINVTSGWSDKLSYQFSTKRPHNNNGSWSSIY
                     GQEIMVEPSKSYKLVTHMKMNRFATQSHVALEGFNETSKQWYQIIQCPPGIEGELQWQ
                     PFSCVIKIPENTTKIRPVLSAGWSSQPKGVARTWFDDLSLNEVTNQTKSYKLSEINKF
                     ILSEGLDNKSSMITTTIQEFNKVNPTLWNVHISSSKPATIGFAEPYDQSWEATVYKDG
                     KKIDVVKSMPLYGAINAFQIKQTGNLDIVLSFAQQYWYQVGLVISAITFIFCVLYIIY
                     DWRKNKKRKPSSSSISNQV"
     gene            complement(2963..3313)
                     /locus_tag="VD694_06100"
     CDS             complement(2963..3313)
                     /locus_tag="VD694_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12315.1"
                     /translation="MDITFSFLSNRDIPRVIPFVITLAAIILAYIIPQDDLIALLIFA
                     VLLLAFYICKFDSRIPIIYAIILLLIAAVLTSQKADDSAKRLALISYSLLVVGVMAVL
                     IDFYRKKKPVQTVA"
BASE COUNT         1147 a          638 c          615 g         1103 t
ORIGIN      
        1 atcgcctact ttctagcacc tttgattgtg gacaatttct taaaaggcaa agaagaaaat
       61 aacaacagat atttcattat cgctggtctt ttactatcta ttgcggtagt ccagctccag
      121 tttttagtaa tgatattttt cattttaatt gttttttccc ttattgactt tcaaagaata
      181 aggaaaagca ttatcggttt atttattatt ttttccgtta cttttcttat aacgttctca
      241 ccagtatttc ttccgcaggt tctttccaat atgagtgagg ttccatttaa tgtgaatcag
      301 cttttgacat atcgtgcact ggctagagca tctgattttg cagaaagttt caggatgttg
      361 ggttatgagc agcaaccttt tagttattta aatctaggta cttcaagaga tctactcgaa
      421 tctaatgaag gtattatccc atcatggata ttctagttag atttcattat tccaatcgcc
      481 ggattctcaa ttctcttttt taggagagac aagtatacca tatcactagc cataatctcg
      541 atagttggcc tgttcttatt gaaaggactg aatcctattt tctcggaagt ttttgctttt
      601 ttattcattc atggtcttta tatcttcaga gaaatctggc atctggcttt tttgtacagc
      661 ttctctataa cttttatgat agcgttcttc attcaatgga tagttcaatt aaagatcaag
      721 gctgttctta aaatcatagt ttctctatcg ctaatttcta tgatcgtagt gtcgaatgga
      781 tatccactat tattgggaaa ctttgctggc tacctacaga catatgaatt tcccattgaa
      841 tataatacgc tatatgaaaa aattaactct gatcctaaaa acaatgttct aatcttacct
      901 tacataaatg ctatccgata cgacaattta tcattaaggg gtctcgatcc tttggtaatt
      961 catacaccta ccatgatctt ccctgttctt ttgggaaata gggaagctcc tacgatgggc
     1021 atttcaatat ggttactatc agctatgaaa gaaaatatga ccgataacct cggtaaagtt
     1081 ttgagcgggt ttggaataaa atatgtaatt ctaagaaatg attttgtatc atactatccc
     1141 aattatacac cattaagctc actcccgctt ttcagagaaa aatgggatac tccactagaa
     1201 ccaattctag attcccaaaa tgatttgaaa gtaatctcaa ataatcctca atacaagatc
     1261 tacgagaacc aaaacaatgt tagtaaaatt tttgttcctg ttactactgg aggaggacta
     1321 tctgattatg attcattgct tttactctcg aatgttactt cactctccaa tgtagctctg
     1381 tacccgacag tctctgaccg ggactcttta gccttcatag atgacaaaag agaagtaaat
     1441 atgtccaaag atgactttgt tgacataagt aagtatgcta cctcatttaa tgccaaaaaa
     1501 ggatgggttg acagtatcaa atcatttgca tatgatcaca taatgacatc aagagttaat
     1561 caaggcttgt tcagtgactc gccaaattct gaagtctctt ttgaattacc aaatgcatac
     1621 aaaaacaaac aagtagaaat atggatgaag gcgctaacat gggagcaagg aggcaaaata
     1681 aatgtccata ttgatggaac aaatcatacg gtaccgtcaa tttcacctgc tcgatcattc
     1741 cagttgttca agatcttcga aggactttct gacaagccct atcatatatc gatacaaaat
     1801 agccaaggga ggaattatgt cgagggtttc tacattaaag aggtaaagtc tccactgaat
     1861 aattctacca acaaagtgtt cctgactaat ttagatgagg accttggtcc caatctagta
     1921 gccaattcgg gtttcgcatt ggtaaacaat cagactaatc tcccattgta ctggaatgat
     1981 tcacttaaca agtgtggaga cacatttacc tgtaaaatta acgttacgtc cggttggagc
     2041 gataaattaa gctatcaatt ctctacaaaa cgtccacaca ataacaatgg gagttggtca
     2101 tcgatatatg gtcaagaaat catggttgaa ccatctaaaa gctataaact cgtaacacac
     2161 atgaaaatga atagatttgc tactcagtct catgtagcat tggaaggctt taatgaaacc
     2221 tcaaagcaat ggtatcaaat tatacagtgt cctcctggaa tcgaaggaga gctacaatgg
     2281 caaccgttca gctgcgtaat aaaaattccc gagaatacta caaaaataag accagtatta
     2341 agtgccggat ggtcatctca accgaaagga gtagctagaa cttggtttga tgatctttcc
     2401 ttaaatgaag taacaaatca aactaaatct tataagcttt ctgaaatcaa caaattcatt
     2461 ctatcagaag gattggataa caaatcttca atgataacaa ctactataca agaatttaat
     2521 aaggtcaatc caacgctttg gaatgtacat attagcagct ccaagccagc aacgatcgga
     2581 tttgcagaac cttatgatca atcatgggaa gctacggtct acaaagatgg caaaaaaatt
     2641 gatgttgtaa aatcgatgcc actatacgga gcaatcaatg cttttcagat caaacaaacc
     2701 ggcaatctgg atattgtttt atcgtttgca cagcagtact ggtatcaagt tggtctagtg
     2761 atctccgcaa taacttttat tttctgcgta ttgtacatta tctacgattg gagaaaaaat
     2821 aaaaagagaa aaccctcatc ttcatccatc tcaaatcagg tttagatgta gtaacatacg
     2881 agctgcttta ccagaagaca accatttact tgtggaaagg ctgctaggca aacaaatcgt
     2941 agcggtatgg aagtgggaaa tatcaagcta ctgtttgaac aggttttttc tttctataga
     3001 aatcaattag aacagccatg actccaacaa ccagtaacga gtaacttatc aatgccaatc
     3061 tcttggcgga atcatccgct ttctgagatg tcaatactgc tgcaattaga agtaatatga
     3121 ttgcatagat gataggtatt cgtgaatcaa acttgcaaat gtaaaaggcc agaagaagta
     3181 ctgcgaaaat tagcaatgct atgagatcgt cctgcggtat gatgtaagct aaaataattg
     3241 ctgcaagggt tataacgaaa ggaatcactc ttggaatgtc tctgtttgat aagaatgaga
     3301 aggtgatgtc catagtttct tattgcaagt acttaattaa aaactaatgt aacagacaaa
     3361 tcaatgatat gttgcaatag ttgactagat cataattctt ctaagattgg cttgtcataa
     3421 agttctggaa ccaattttga acaaacaact gtctatgttg gagagacatt tttatttttt
     3481 agagttctag atactttatc ctt
//
LOCUS       DASPFX010000278         4192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_892897, whole genome shotgun sequence.
ACCESSION   DASPFX010000278 DASPFX010000000
VERSION     DASPFX010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892897"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..926
                     /locus_tag="VD694_06105"
     CDS             186..926
                     /locus_tag="VD694_06105"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HXW12316.1"
                     /translation="MDLIEFRYSDFNLLCPRKYLIHLRETFILDAYQSHLLKSNDVVL
                     DLGSTTGDFCILASRKVGPTGKVIAIEPNPTDYEILQENIVRNKCSNVTSLNIGAAGK
                     RGRQVLDFRGTTFTFKTDTLDNIVKSLTNVRNIDFIKMDIEGYEYDVVKSSIDIFRKA
                     RVVSMEFHGTKQKIDDLLLPIGFTYHPVTVPLLFKRLAANIFSHPIHFVKSSFSIIKD
                     NPKLIYSIPLGYEPSKNSQAAFTGYYTK"
     gene            1168..2013
                     /locus_tag="VD694_06110"
     CDS             1168..2013
                     /locus_tag="VD694_06110"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HXW12317.1"
                     /translation="MTGKNKNDVSNHGVCTDTGLVSIVIPTKDSGRTLQRCLDSIMTQ
                     TYQHFEILIVDKRSTDDTISIAGQFKVRIFSLDVERTTAKNFATRKANGTYVLFLDSD
                     MLLEPTVIEQCVNAIQAADVGGIVIPEKSAGLGFWIKVRDFERSFYYGTKIESARFFR
                     TNQVIEVGGFDEMVIMYEESTLPQRIEKIGLKTAVRVSSFIIHDEGNFKLKSWLRKKR
                     YYSQTARIYAQRYKSYSQQQLDLGRRTGIYIRNKNWITLMRHPILTTGLVILKSLEFL
                     VSKMK"
     gene            2442..3578
                     /locus_tag="VD694_06115"
     CDS             2442..3578
                     /locus_tag="VD694_06115"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HXW12318.1"
                     /translation="MKFLIIINGSTGKDMGGGDYHMLQVMKEWSKSHDISLMTPLVGF
                     LFCRPLLLDKYKVYFTSCGTKATESFRLIPAYFNRIVKSIFLRFDDKPDVIVCSTHIL
                     FDTLPGFILQFRFRTKRVVYVHHIIGKHSDHRRGILSRISILAEKLSLPLIRSANIVF
                     VVNEEVRSDLIEMGFDPTKICVSSNGIDYSYIDTIRPTDDTRYDGCFCGRLVKRKGIY
                     DLIKIWKLVTSRYPNLKLVIVGDGPEYTSLSNKMKEMNLVDNIKLTGFISERDKFLIM
                     KRSKVFIFPSYEEGWGIAVTEAIACGLNVVLYDIGTFDVFGKHVIMVEKGNTSKMAEI
                     IINLIERESHKNIEDKKLVRIESVLDWKEVANKELQDIDDRSHR"
     gene            complement(3681..>4192)
                     /locus_tag="VD694_06120"
     CDS             complement(3681..>4192)
                     /locus_tag="VD694_06120"
                     /inference="COORDINATES: protein motif:HMM:NF026018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HXW12319.1"
                     /translation="EFILSLIGTDYISGQLMLFILASGILPFAIATNSISRFNYLGKP
                     KKVLFIGLLQLIGFVVGFILLVPVFQGVGAALAILISYSMSCIPALIWSEKSLLRYVA
                     NAAIAVVAGWAISNMFRLLLPDMVITELIALAVSIFITTTLIFALKNTSISEVRTLLK
                     TVVNSSTIK"
BASE COUNT         1423 a          652 c          819 g         1298 t
ORIGIN      
        1 tattcaatac aaagagctca aaatagttta ttgatgataa attaaatcct ttggatttca
       61 ttgcaattta aaagtctcta gttatgactt cccttcttgc aacaacattg gacattgccc
      121 agagtaattg atgataatag catcagtgaa ccattaatag atgagggtgt acttattgtt
      181 tcaagatgga tttgattgaa ttccgatatt ctgactttaa tttactttgt cccaggaaat
      241 acttaataca tctcagggaa accttcatct tagatgctta tcaaagtcat ttattaaaat
      301 caaatgatgt ggtattggat cttggatcga caactggaga tttctgtatt ttagcttcta
      361 ggaaggtcgg tcctacggga aaggttatag ccattgaacc aaatcctact gactatgaaa
      421 tacttcaaga aaatatagta agaaataaat gttcgaacgt tacttcgttg aatattggag
      481 ccgcgggtaa gcggggccgc caagtattag actttagagg aacgacattc acattcaaaa
      541 cagatacttt ggacaatatc gtcaaatcct taactaatgt taggaacatt gattttatta
      601 aaatggatat tgaaggatat gaatatgatg tggtcaaaag tagtattgac atctttagga
      661 aggctagagt cgtatccatg gaatttcatg gtacaaagca aaagatagat gacttgttac
      721 tgccaattgg ttttacatat cacccagtta ctgtaccact tctttttaaa aggttagctg
      781 caaacatatt ttcacaccca attcattttg taaagtcatc tttctcaatc attaaagata
      841 atccaaagtt aatatattca attcccctcg gatatgagcc atcaaaaaat tctcaggcag
      901 ctttcactgg atattatacg aaataaattt acggtcttta acggtttttc gttgagattt
      961 gattgatcct tctctcaggt taatatgtaa ggtggtacag tgtcatcgag tatgatcgtt
     1021 gtcattagga cagcaatggt tgtgtgcagt aaattcagac agatggatac aaatttaggt
     1081 aataatagca tttacaataa taataatgat gggaaaatcc aaaatgatca atattaaatt
     1141 ggacttacga attgttttaa tctgtacatg actggtaaga ataaaaatga tgtaagcaac
     1201 catggagtgt gcactgatac aggtctcgtc tctattgtta ttccgacaaa ggactctgga
     1261 agaacactac agaggtgcct agactccata atgacacaga cttaccagca ttttgaaatt
     1321 ttgatcgtag ataaaagatc cactgatgac acaatcagta ttgcaggtca gttcaaagtc
     1381 aggatcttta gtttggatgt agaaagaaca actgcaaaaa attttgcaac acgtaaggca
     1441 aatggaacat atgttttatt tttggattct gacatgcttt tagaacctac agtaattgaa
     1501 caatgtgtca atgccataca agctgcagat gtaggaggaa tagttatccc agaaaagagc
     1561 gcgggactag gtttttggat aaaagtgaga gattttgaaa gaagtttcta ttatgggaca
     1621 aaaattgagt ctgcacgttt cttccgaact aaccaagtaa tagaggtagg aggtttcgat
     1681 gaaatggtga tcatgtatga agaaagcact ctaccgcaaa gaattgaaaa aatagggtta
     1741 aaaacagctg ttagagtttc atcatttatt attcacgatg aaggcaattt caaactcaaa
     1801 agctggctta ggaagaagcg ttattattca cagactgcaa gaatatacgc acagagatat
     1861 aagagttatt cacagcaaca acttgatttg ggacgcagga ctggcattta tatacggaat
     1921 aaaaactgga taactttgat gaggcatccc attctaacca ccggtcttgt aattctcaag
     1981 agtttagagt tcctcgtttc aaaaatgaaa tgaaagtaga ctattcaaag attattataa
     2041 gtcgattctt atttaaagag caggactacc tgattgtggt atcaaatttc cgcatttagc
     2101 aaaaagaaac tgttttactt tcgaatctgt ctttcccact tccgataatc gattagatcg
     2161 gatctgatac aaatgttggt aatgacttct gacagattga atttttctag aggtcaagaa
     2221 aaatttttgc taggtttatt ggctattttg gaaataaaga ccattttggt caatttttat
     2281 tcaaagctgg acttggatat aattatgtct aggtggattt gtttaggcat ttacgaaact
     2341 tgaaaaacta acatggagaa ttttaatttt aaataaagtc attgcattta gtagaataat
     2401 cactaacagt ttttaaatct catttcatta ctaactttta attgaaattc ctaattatta
     2461 ttaacggctc cactggaaaa gatatgggag gaggagacta tcatatgtta caggtgatga
     2521 aagaatggag taagtcacat gacatctctt tgatgacccc actggttggg tttctatttt
     2581 gcagacctct tcttttagac aagtacaaag tttactttac gtcttgtgga actaaagcga
     2641 cagaatcatt tcggctaatt ccagcctatt ttaatcgtat agtgaaatct atattcctac
     2701 gcttcgatga taagcccgat gtaatagtgt gttctacaca tatacttttt gatactctcc
     2761 ccggtttcat cttacagttt agatttcgta cgaagcgtgt cgtgtatgta catcatataa
     2821 ttggtaaaca ttccgaccac agaagaggaa tattgagtag gatttcaata ctagcagaaa
     2881 agctaagtct acctttgatt cgaagtgcga atattgtatt cgtggttaat gaagaagtaa
     2941 gatctgatct catagagatg ggatttgacc cgaccaaaat atgcgtatcg agtaacggaa
     3001 tagattatag ttatatagat acaatcagac ctactgatga tactagatac gacggctgtt
     3061 tttgtggacg attagtaaag agaaagggaa tctatgatct gataaagata tggaaattag
     3121 tgacaagtcg ttaccctaac ttaaagctgg taattgttgg agatgggcct gaatacacaa
     3181 gcttgtccaa taagatgaag gaaatgaatc tggtggataa cattaaattg acgggtttta
     3241 tttcagaacg agataaattt ctaataatga agcgttctaa agtatttatt tttccgagct
     3301 atgaggaagg atggggaata gccgtgacag aggctattgc ttgtggactt aatgttgtcc
     3361 tatatgatat aggtacattt gatgtatttg gtaagcacgt aattatggtt gagaagggta
     3421 acacgagcaa aatggccgaa attattatca atctcataga aagagaaagc cacaagaata
     3481 tcgaagacaa gaaattggtt aggattgaat cagtattaga ttggaaggaa gttgctaata
     3541 aggagctaca ggatatagat gatagatccc atcgttgatt acgatcctta cttcaaagcc
     3601 tgcacttagg ttattcggat ggaagctaaa caatcgacat aattttctca tttgattcat
     3661 atttatgcaa atgatgaatc ttactttatg gttgaactat tgaccactgt ttttaatagt
     3721 gttcttactt cagatatcga cgtattcttg agtgcaaata tcaatgtcgt agtaatgaat
     3781 atggagacag ccagtgctat taattcagtg ataaccatat caggaagcaa taatctgaac
     3841 atatttgaaa tagcccaacc agcaaccacg gcaattgcgg catttgcaac ataacgaagc
     3901 aggctttttt ctgaccaaat taatgctggt atacaagaca tagagtatga tatcagaatc
     3961 gcaagtgcag caccaacacc ttgaaagacc gggaccaaaa ggataaaacc aactacaaat
     4021 cctatcaact gtaacaaccc aataaacaga acttttttgg gtttaccaag gtaattgaac
     4081 ctggaaattg aatttgtcgc gatggcaaaa ggtaaaattc ctgatgcaag aataaataac
     4141 attaattgtc cagagatata gtctgttcct ataagagaga gtataaattc ag
//
LOCUS       DASPFX010000279         3876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_92837, whole genome shotgun sequence.
ACCESSION   DASPFX010000279 DASPFX010000000
VERSION     DASPFX010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3876
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92837"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..622
                     /locus_tag="VD694_06125"
     CDS             116..622
                     /locus_tag="VD694_06125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12320.1"
                     /translation="MLFGKNKLRSGDYAFVTQDYSGKIRLIIGRIVSLTDSVARIKGS
                     YVIPVGLMEKVSAGRGDGRPKEALKNPDPDNCIFMLIDNVETGVFDEDVDIGSSNAKW
                     INEERFHVLDGWIKENLPELFANVLRATSSEERMQARAVLMEKMSSLYERDLKEHMYA
                     VARSTKIL"
     gene            667..978
                     /gene="rpl12p"
                     /locus_tag="VD694_06130"
     CDS             667..978
                     /gene="rpl12p"
                     /locus_tag="VD694_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein P1"
                     /protein_id="HXW12321.1"
                     /translation="MEYVYAALLLHKLNKDITEDNVKNVIAATGASPDEVKIKALVAA
                     LSEVNIEESLKATPMAMAVPATAAAADAGAAQAKDEKKEEKKDEKKEEEALEGLSSLF
                     G"
     gene            complement(1129..2013)
                     /gene="rplJ"
                     /locus_tag="VD694_06135"
     CDS             complement(1129..2013)
                     /gene="rplJ"
                     /locus_tag="VD694_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HXW12322.1"
                     /translation="MTAQKHTRTSYPKGKQDLYQQMMELPKLYSVIALSKVNKVRATQ
                     LMMIRKKFHKEIVIKVIKNRVTQRAFEKIADLKGIQELSSQLEGQCALMFTNISPFKL
                     NLIFEQNKVFLAAKGGDITKTEIMIPAGDTGITPGPVLSEFKEANVPTKIDQGTIWVS
                     KDTVVARPDDVISTKLASLLSKMNIKPIEAGIVVNYALADKLIFTENDLRIDLNELKN
                     DLSRSYNESISLAVESSYFTKESMGHLLSKASRHARSLAIDSNYMTKETAGQIISLSV
                     LKANNVTAQLKNKGYSPN"
     gene            complement(2025..2687)
                     /locus_tag="VD694_06140"
     CDS             complement(2025..2687)
                     /locus_tag="VD694_06140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HXW12323.1"
                     /translation="MLDDNQLRGMIKNAREGFEKRNFTQSAELTLILKDIDVKKGFSV
                     NEIVNLPNKVTKTSSICVFASGDMGTRAKKAQVDRIIEPEELSRLGTNKKDARKVVKA
                     YDFFLADTTLMSSVGRSLGQFMGPKGKMPSPIAYGAPIENIADRFRGSVRARTKNQLN
                     ISAKIGDEKMEDEQILGNAVAVISAIEKKLPQGDKNIHNAVIKFTMSKPSKASALKQE
                     KK"
     gene            complement(3106..3738)
                     /locus_tag="VD694_06145"
     CDS             complement(3106..3738)
                     /locus_tag="VD694_06145"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HXW12324.1"
                     /translation="MESKIILVFGAHPDDLEIGMGGTIAKLAGMGYEVQPVIATLPNF
                     VKSDTKEGRKTESLLAAKVMGCNSPEFLDLSPEEMVFGRKFITLIDSIVTKYKPESVF
                     TQWYGDSHQDHQILTKSVISACRNQNNLFMYETTIPGGITENSFRPQLFVDITETIEI
                     KKNALECFESQFVRCGEIWIPAILGRCSFRGYQINSKYAEAFEVVKVTKW"
BASE COUNT         1104 a          733 c          713 g         1326 t
ORIGIN      
        1 tttttcatga atatctgcgg ctacaaatat tctaggcaca agatacgcta tcgaggtatc
       61 atatattaaa atttgaacag caaataataa ataatttact aaaactcatt ttgatatgtt
      121 atttggaaag aataagttac gaagtggaga ttatgctttt gtaactcaag attattcggg
      181 aaaaattaga ttgataattg gtaggattgt ttctcttact gattcagttg ctagaattaa
      241 aggatcatat gttatccctg taggattgat ggagaaggtt tctgcaggac gaggagatgg
      301 aaggccaaag gaagctctga aaaatcccga tccagataac tgcattttca tgttgattga
      361 taatgttgaa acaggcgtct ttgatgagga tgttgatatt ggctcttcaa atgcaaagtg
      421 gataaatgaa gagagatttc acgtacttga tggctggata aaagaaaatc ttcctgaact
      481 ttttgcgaac gtactgcgag ctacaagcag tgaagagcga atgcaggcca gagctgtact
      541 gatggaaaaa atgagctcac tttatgaaag ggatctaaaa gaacacatgt atgcagtagc
      601 tagaagtacc aagatactgt gattttgaaa gttttatatt atggacaagg agagagcatt
      661 gttgaaatgg aatacgtata cgctgcatta ttactacaca aattaaacaa ggatatcact
      721 gaagataatg taaagaatgt gatagcggct actggtgcaa gtcccgatga agtaaagata
      781 aaagctctcg tagcggccct gagtgaagta aacattgaag aatcattaaa ggcaactccg
      841 atggctatgg ctgtacctgc tacagcagct gctgctgatg ctggagccgc tcaagctaag
      901 gatgagaaga aagaagagaa aaaggacgaa aagaaggaag aagaagcttt agaaggatta
      961 tcttccttat ttggctaagt aacccttttt ttaatatttt tagttcattt gatttttgta
     1021 tcctcgatat tttgttatct atagataaaa agatgcagaa ccgattcata acaagcttct
     1081 atccagtagt gtactaatta gaattcaaat tctaaggggt ttaaatgact aatttggtga
     1141 atagccctta ttcttgagct gggcagtcac attgtttgcc tttagcacag ataatgagat
     1201 tatttgtcct gctgtctctt ttgtcatgta gtttgaatca attgccagcg atcgtgcatg
     1261 tcttgaagcc tttgacagca agtgtcccat tgattctttt gtaaagtaac ttgattcaac
     1321 ggcaagagat atagattcat tatatgatct gctcaaatca ttctttaatt cattcagatc
     1381 aattcttaga tcgttttctg tgaaaattaa cttgtccgca agtgcatagt ttactacaat
     1441 tcctgcctcg atgggcttga tattcatctt ggacagaaga gaagcaagtt tagtggaaat
     1501 cacatcatct ggtcttgcta ccaccgtgtc tttacttacc catattgttc cttgatcaat
     1561 ctttgtaggt acatttgctt ctttgaattc tgataaaact ggaccaggag ttattcccgt
     1621 atcgccggca ggtatcatta tttcggtttt agtgatatct cctccttttg ctgctaaaaa
     1681 caccttattc tgttcaaaaa ttaaattgag tttgaatggg ctgatattag taaacataag
     1741 tgcacattgt ccctctaatt gggaactcaa ttcttgaata cctttaagat cggcaatctt
     1801 ttcaaatgcc ctttgtgtta ctctattctt gattactttg atgacaattt ctttgtggaa
     1861 tttctttcta atcatcatca attgagttgc tcgaacttta ttgacctttg aaagtgcaat
     1921 tacgctatat aattttggaa gttccatcat ctgttggtac aagtcctgtt ttcctttcgg
     1981 atagcttgtt ctggtgtgtt tttgagctgt cattatctat cttcctactt tttctcttgt
     2041 tttaatgctg aggcctttga aggcttgctc attgtaaact ttattaccgc attatggata
     2101 tttttatctc cctgtggtaa ctttttctca atggcagaaa ttaccgcaac agcattaccc
     2161 aaaatttgtt catcttccat tttttcatca cctatctttg cagatatgtt aagttgattc
     2221 tttgttcttg ctctaaccga acctctaaat ctatctgcta tattttctat cggagctcca
     2281 taagcgattg gtgatggcat ctttcctttt ggccccatga attgacccag tgagcgacct
     2341 acacttgaca tcagagtggt atctgccaag aaaaagtcat aagctttgac gacttttctt
     2401 gcatctttct tattggtacc aagcctgctt aattcttcag gctctataat tctatcaact
     2461 tgagcttttt tcgctcttgt tcccatatcg cctgatgcga atacacatat gcttgaggtc
     2521 tttgttactt tatttggtag atttacgatt tcgtttacgc taaaaccctt tttaacatca
     2581 atatccttca atatgagggt taattccgca gattgagtga aatttcgttt ctcaaatccc
     2641 tcgcgggcat tttttatcat acctcttaat tgattatcat caagcatagt tgaaattttt
     2701 agatctcaag cctcttataa acgtgatttg taaatgcatc cctcttgtta tccagagatg
     2761 gtttagttgg aacgtcttct gacacacacc tcgggtctaa gtaatagcac gggcccggag
     2821 ggcttcgatc cctcgacttc cggctctctt cgtttagact tagaaggcag gcgctctatc
     2881 caagctgagc tacgagccca tccggactgc tttatttagc aaatcctttg caaaaaggaa
     2941 ataaaatatt cacttataaa ctgttcaaat ctttttctga atcctcaaaa actaaattta
     3001 gtttgcagat ttttagtctt ttcaatctgc ctatactgca acaagtttcc atgaacacaa
     3061 aaatcaatcc tactgatttg aatgaataaa cgattgtcta ttaatctacc atttagtaac
     3121 tttgaccact tcaaaggcct ctgcatactt tgaatttatt tgatatcctc taaaggaaca
     3181 tctgccaaga atcgctggaa tccaaatctc gccgcagcga acaaactgag attcaaaaca
     3241 ctcgagggca tttttcttta tttcaattgt ttcagtaatg tctacaaata attgcggcct
     3301 aaatgagttt tcggtgattc ctcctggtat tgtagtttca tacatgaata gattattttg
     3361 atttctgcat gccgaaatca cgctttttgt caagatctga tgatcctgat gagagtcacc
     3421 ataccattga gtaaatactg actctggttt gtatttagtg actatcgaat ctattagtgt
     3481 gatgaatttt cttccaaata ccatctcttc cggtgagagg tcaagaaatt caggcgaatt
     3541 acaacccatt actttggctg caagtaaaga ctctgtcttt ctaccttcct tggtatccga
     3601 ctttacaaaa tttggtaatg tggctattac cggctgaact tcataaccca tgccagcgag
     3661 tttagctata gtaccaccca taccaatttc caggtcgtct gggtgagctc cgaatactaa
     3721 aattattttg gattccatac aaccagagtt ggatgatttg cttacttatg attgttaatg
     3781 gctgaaggta ctaacctgta gcccctcatt tctctaagtc ttctataatc ctgatcgact
     3841 tccattgccg ccatcagtat cttgctcttt attgat
//
LOCUS       DASPFX010000280         3640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1771902, whole genome shotgun sequence.
ACCESSION   DASPFX010000280 DASPFX010000000
VERSION     DASPFX010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3640
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1771902"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VD694_06150"
     CDS             <1..285
                     /locus_tag="VD694_06150"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HXW12325.1"
                     /translation="RVFLDETKNALVSRRKFQMGLVDVRSPKEFTGEILAPPEYPTEH
                     TQRGGHIPSAINIPWAQVVNDSDGTFKSIEQLKQLYESNGITKDRDNHLL"
     gene            200..424
                     /locus_tag="VD694_06155"
     CDS             200..424
                     /locus_tag="VD694_06155"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HXW12326.1"
                     /translation="MGLSNQLNSSNSYTNPTALQKIEIITYCRIGERSSHTWFVLKYL
                     LGYPDVKNYDGSWTEWGNMIANPREITLFI"
     gene            complement(546..893)
                     /locus_tag="VD694_06160"
     CDS             complement(546..893)
                     /locus_tag="VD694_06160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12327.1"
                     /translation="MSGISSNNNRHLLLYTLKWMSLYIAIGFISALLLPFPVSLLGTI
                     GGFMLVNFLRTRFMMKKMGISMKGLFGSLRSSDASPSMYGYNPIKYYCMSCGNENKEI
                     SCLKCGSKMKRVG"
     gene            complement(1321..1494)
                     /locus_tag="VD694_06165"
     CDS             complement(1321..1494)
                     /locus_tag="VD694_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12328.1"
                     /translation="MERIFSMLRSFVDDSEKTKFCVSCGNKATQEALFAVGDGAILIE
                     KYCDTCATNVQRR"
     gene            1731..2570
                     /locus_tag="VD694_06170"
     CDS             1731..2570
                     /locus_tag="VD694_06170"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HXW12329.1"
                     /translation="MTGSSSGIGYETSLLLARNQFTTYATMRNIYKSDRVREIALKEN
                     IPLNVTQLDVNSDSSVDDSIESIIKENGRIHVLVNNAGYDLFGSLEESSLEEIKQQFE
                     TNVFGVIRTTKAVIPTMRKQRNGTIVNISSVGGTVGLFPFSTAYHASKFAIEGFTESL
                     KQEIADFGINVILIEPGFIDSNFLDNMKTAKGFEPNKSPYSNTVQRVFQGFESISAYS
                     SHPSKVAHTILNAANSPNLELRNPVGKDAESIFKARNELSDRELERWARESYMEKKGF
                     IRQ"
     gene            complement(3255..3470)
                     /locus_tag="VD694_06175"
     CDS             complement(3255..3470)
                     /locus_tag="VD694_06175"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HXW12330.1"
                     /translation="MDNNVPKMALSLNCKEAGDPVCTHTMYGDTEEELLANAKKHGIE
                     VHGYTEETWNEEVSKNLDHFRKLIKTS"
BASE COUNT         1233 a          654 c          635 g         1118 t
ORIGIN      
        1 cgggtatttc ttgatgaaac taagaatgca cttgtaagca gacggaaatt tcagatggga
       61 ctagttgatg ttagaagtcc aaaagagttt acaggtgaaa tattggcacc gccagaatat
      121 cctactgaac atacacaaag aggaggacat ataccgagtg caataaacat tccatgggca
      181 caagtagtca atgattcaga tgggactttc aaatcaattg aacagctcaa acagctatac
      241 gaatccaacg gcattacaaa agatagagat aatcacctac tgtagaatag gggaaaggtc
      301 atcacatacc tggtttgtcc ttaagtattt actaggatat ccagatgtaa agaactatga
      361 tggttcatgg actgaatggg gaaatatgat agcaaatcct agagaaataa ctctatttat
      421 ttaattagcc tgacaagcga tttcattgaa tagattcgtg gaatagttaa ttacaagtta
      481 gccttatttg taatactgtt accaaatacc tgtttactcc attgtatact tatatattgt
      541 taaaatcatc ctaccctctt catttttgaa ccacatttaa gacatgaaat ttctttgttc
      601 tcgttaccac aactcataca gtagtatttt attggattat atccatacat ggaagggctt
      661 gcatctgacg accgcagcga accaaatagt cctttcatac taattcccat ctttttcatc
      721 ataaagcgtg ttctcaagaa gttaactaac ataaatcctc caattgttcc gagcagagat
      781 acagggaatg gcagcaataa agctgagatg aatcctatag ctatgtacaa gctcatccac
      841 tttagagtgt atagcaacaa atgtctatta ttattgctag aaattccact cattacgcat
      901 caccctgtat tctttactta tattatacaa caagcactat taaagcaaat gtatacactg
      961 caataccagt atttcctaat tttcactaaa ttgggagttt gtagcagatt taatgatttg
     1021 agcaggaggc tattgtgcct cttgtttaat acgcaatttt tccttacctt ttttataatt
     1081 tggtgaagtc cgtagagggc atttgcagca tggataggta taaccctcat gaaatagaaa
     1141 tatttcacat ctactgcaat attttattct tgtgctataa tatccaaaac ttgaacctat
     1201 tttcatacat atatttcgac atggtattgc gatgcacaat acacaataat taaaagatca
     1261 taaaagatac tgtaataccc tactgtgagg gggagacaac ctattactgc tgtactcctg
     1321 ttaccttctc tgcacatttg tagcacatgt gtcacaatat ttttctatga ggatagctcc
     1381 atcgcctaca gcgaataatg cttcctgagt agccttgtta ccacaggata cacagaattt
     1441 tgtcttttca ctgtcgtcaa caaacgacct taacattgaa aatattcttt ccattctatt
     1501 ctttcacccc tacgatggtt tcgttgattg tatttcttgg caatactgca atcgtcgcat
     1561 ctgcggcaac tatgaatttc ggattgtttc tcatcgttat atatagtcgt catacatata
     1621 agaacttaca tttttcatcc caacatcacg ataaattagg gagcaaaaat gcttgtcgct
     1681 atgctcatat aatgcgatgt catgtttata tcatgacaaa ggtggctgtc gtgacaggca
     1741 gttcaagtgg aataggttat gaaacatctc tactgttagc aagaaatcaa tttacaacat
     1801 atgcaactat gcgaaatata tacaagagtg atagagtacg ggaaattgca ttaaaggaaa
     1861 atattccact taatgttact caattagatg taaacagtga ttcgtcggta gatgattcca
     1921 tcgaaagtat tataaaagaa aatggaagga tacacgttct agtcaacaat gcggggtatg
     1981 acctatttgg ctctcttgaa gaatcaagcc ttgaggagat aaagcagcag tttgaaacaa
     2041 atgttttcgg tgtaataaga accactaaag cagtaatacc aacaatgaga aaacagcgta
     2101 atggcacaat agtaaacata agttctgttg gcggcacagt aggattgttc ccattttcaa
     2161 ccgcatacca tgcaagcaag tttgccatag aagggttcac agaatccctc aaacaagaaa
     2221 tagctgactt tggtattaat gtcatattaa ttgaaccagg atttatcgat agtaactttt
     2281 tggataatat gaagactgcc aaaggctttg agccaaacaa atctccgtat tccaatacgg
     2341 tgcagcgagt ctttcaaggt tttgaatcaa tcagtgctta ctcttctcat ccttccaaag
     2401 tggctcacac aatcctaaat gcggcgaatt cacccaacct agagttaagg aatcccgtag
     2461 gaaaagatgc agaatctatc ttcaaagcga ggaacgaatt atctgacagg gaactggaac
     2521 ggtgggcacg agagagttac atggaaaaga aaggttttat acgtcaataa tattataaga
     2581 ttgccagctt atcaattggt tactatatag ccaaaacgct ataaattgaa cattttagaa
     2641 caaattaatg acaggaattc gttagagata aaaatagaca gcttctaagt agaggtaaaa
     2701 cacaacgtca aattagtaaa ataatgaaga tatcccaggc tataatctaa tcactcaaag
     2761 aagaatcgaa agcctatatt caaaaatatg taaatgagga actaccagca caatacgaaa
     2821 ctacatgatt aagtcaaatt attagcataa aagcgttaag gcaggcaggc ggagaacatg
     2881 gaaagaaggc acagaaaatt aaggatagac tgaacggcga cgactgtcca acatgtggat
     2941 aggtttggga agaatctaat tttttcttta tttactaata ccttattttc cactgacggg
     3001 aaaaatcagc aggagcaggt tgaccattcc agtcagtttc ataatataca tctaaacaag
     3061 gatacttatt catataatat ggataatatt taatttttag tacatataat tgtcgagaca
     3121 aaccgaggag gtgaagaata gccctcgaaa tgatgactac atacgactat ttctctttct
     3181 ttctttctta tattttctgt gttgataagc agaataaaaa aatataaata ttttattttg
     3241 tcgtaatctg ttatctagga agtcttaatt aatttacgaa aatggtctag attctttgaa
     3301 acttcttcat tccacgtttc ttcggtatat ccatgcactt ctattccgtg cttctttgca
     3361 ttagcaagaa gctcttcttc cgtatctcca tacatagtat gagtacatac aggatctcct
     3421 gcttccttac aattgagact caatgccatc tttggtacgt tattatccat atagttgttt
     3481 ttatcttttt cataaacgaa attaaaggta aatgtttgta ttgaattaat aagatacata
     3541 gcagttaaaa catttggttt acaatgcaat gaatgccaaa cgatattgca tcaataaatg
     3601 tacttcgctt tttgatacaa cgcttagtat caagaattat
//
LOCUS       DASPFX010000281         2891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1345618, whole genome shotgun sequence.
ACCESSION   DASPFX010000281 DASPFX010000000
VERSION     DASPFX010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345618"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..216)
                     /locus_tag="VD694_06180"
     CDS             complement(7..216)
                     /locus_tag="VD694_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HXW12331.1"
                     /translation="MSKAATSLRNCFFCGKHIPTHEGMMLVKNDGSIQWTCSPKCKKN
                     MKLKRDPRKFKWTRKYVKGGIKVKK"
     gene            complement(225..440)
                     /locus_tag="VD694_06185"
     CDS             complement(225..440)
                     /locus_tag="VD694_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HXW12332.1"
                     /translation="MSKAAEVKVTPAEVIQIVGRTGIAGEVIQVRVKVLEGKDKGRIL
                     TRNVKGSVRMNDILMLRETEREARKIK"
     gene            complement(449..829)
                     /gene="rpl7ae"
                     /locus_tag="VD694_06190"
     CDS             complement(449..829)
                     /gene="rpl7ae"
                     /locus_tag="VD694_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7Ae"
                     /protein_id="HXW12333.1"
                     /translation="MSKPFYVKFETPKDLVNAVYEAVRVAKQSGSVRKGTNETTKAIE
                     RGIGKLVVIAEDVQPPEVVAHIPIICEERNTPYIFVPSKQQLGESLGIEVGSAAATII
                     DAGEGQHIIDQVVGALSSIKDKKE"
     gene            complement(911..2284)
                     /gene="glmM"
                     /locus_tag="VD694_06195"
     CDS             complement(911..2284)
                     /gene="glmM"
                     /locus_tag="VD694_06195"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HXW12334.1"
                     /translation="MMNKNMPLFGTNGIRGVFRKDLSLDFLVDITRSLAAYYKKGPIL
                     IGRDGRNSNNILFNIVTAALNSDGLDTVDAGILPTPCLQYAIKRNHYQGGIMITASHN
                     PPEYNGVKPIASDGVELPREDESVVEQIFTNKKFIASEIVGRNFKEEMIIDKYIDDVL
                     ALVETDKIRKRKFKVTMDLGNGVQALVAPALAKKLGCNVVTVNGTVDGNFPGRGSEPT
                     PSNLGLMSSIAKETNSDIGAAYDGDGDRSIFCDEKGIVHWGDRTGTLLARYLISTKHP
                     KAKIVCPINTTHILTKIAQDGGSEIIHTKVGSVEVSREMVRQGAIIGMEENGGFMYGV
                     LNQVRDGALTTALMLDLMASEERSLSEILSSLPKVYQYKSKFECDEMSMIQKVIDSVK
                     KHGSPMKIETLDGVKIWFDEESWLMLRPSGTEPLIRIYGESTDELLINSKVNEYTRLV
                     KESLNEK"
     gene            2357..2488
                     /locus_tag="VD694_06200"
     tRNA            join(2357..2389,2412..2419,2445..2488)
                     /locus_tag="VD694_06200"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2415..2417,aa:Leu,seq:tag)
BASE COUNT          785 a          654 c          464 g          988 t
ORIGIN      
        1 tattgcttat tttttaacct tgattccgcc cttaacatac ttgcgtgtcc atttgaattt
       61 tcttgggtca cgctttaatt tcatattttt cttgcatttt ggtgaacatg tccattgaat
      121 agatccgtcg ttttttacca acatcatacc ctcatgtgta gggatatgtt ttccacaaaa
      181 gaaacaatta cgaagtgaag tagctgcttt gctcatctat atccctactt tatctttctt
      241 gcctctcttt cagtttctct caacatcagg atatcattca tcctgacgga tccttttaca
      301 tttcttgtaa gaattctacc cttatccttt ccttctagaa cctttaccct aacttggata
      361 acttcaccag caattcctgt cctgccaact atttgtataa cttctgctgg cgttaccttt
      421 acttctgcag ctttactcat tagtaatatc actccttctt gtctttgata ctagataatg
      481 ctccaactac ctggtcgatt atgtgttgac cttctcctgc atcaataatg gttgctgcag
      541 cagagccgac ttcaattccc agagattcac ctaattgttg tttgcttggc acaaaaatat
      601 aaggagtgtt cctctcttcg caaataatgg gaatgtgagc aactacttct ggaggctgga
      661 cgtcttcagc tattaccacc agtttaccaa ttcctctttc tattgccttt gtggtttcgt
      721 tggttccttt cctaacactt ccgctttgtt tggccactct aacggcttcg tagacagcat
      781 ttactagatc ttttggagtc tcaaatttta cataaaacgg tttactcatt ttataatgca
      841 tcacccattg ggatcatctt attctactga atagaaggag aggcgtatta aaaatgttgc
      901 cgcgtaaaca ttacttttca ttcagagatt ccttgacaag tcgagtgtac tcatttacct
      961 tcgaatttat gagcagttcg tcagttgatt caccataaat tcttatcaag ggttcagtac
     1021 cactgggccg aagcatcaac caactttctt catcaaacca gatcttaaca ccatccagag
     1081 tttcaatctt cattgggctc ccatgcttct ttacagaatc aatcactttt tgaatcatgc
     1141 tcatttcatc gcattcaaat ttagatttgt attgataaac cttagggaga gaagacagta
     1201 tttcagataa actcctttcc tccgaagcca ttaaatccaa catcaaagca gttgtgagag
     1261 caccatctct tacctgattt aatactccat acataaatcc cccattttcc tccattccaa
     1321 ttatcgctcc ttgcctaacc atttcccgag aaacttccac actgccaact tttgtatgaa
     1381 taatttccga acctccgtct tgagcaatct tggtcaggat atgagtagtg tttattggac
     1441 aaactatttt cgcttttgga tgtttggtcg agatcaaata tcttgccaat agggttccag
     1501 tcctatcacc ccaatgcaca attccttttt cgtcacagaa tattgatcta tcgccatcac
     1561 cgtcatacgc tgcaccaata tcagaattag tttcctttgc aatgctactc attagaccca
     1621 gattcgatgg agtaggttct gaacctctgc cgggaaaatt tccatccacc gttccgttaa
     1681 cagttaccac attacatccg agtttttttg ctagtgcagg tgccaccaac gcttggactc
     1741 cattacccaa atccattgtc actttgaatt tgcgttttct tatcttgtct gtttcaacaa
     1801 gtgctaaaac atcatcaatg tatttgtcaa taatcatttc ctccttgaaa tttcgtccca
     1861 caatttctga agcaataaat tttttatttg taaaaatttg ttccacaact gactcgtctt
     1921 ctcttggcaa ttctacccca tcgcttgcta ttggttttac accgttgtat tccggaggat
     1981 tatgtgatgc agtaatcatg ataccacctt gataatgatt cctttttata gcgtactgaa
     2041 gacaaggtgt gggcaaaata cctgcatcta ccgtgtccaa accatcggaa ttgagtgcag
     2101 cagtaacgat gttaaacaaa atattatttg aatttcgccc gtcccttcct atcaatatgg
     2161 ggcctttctt gtagtatgcc gctagggacc gagtaatgtc gaccaagaaa tcaagagaaa
     2221 gatcttttct aaatactcct ctgattccat tagtaccaaa aagtggcata ttcttgttca
     2281 tcataactaa acaccaatat attctaaata atagatcatt ttggtcggcc agctatcagt
     2341 aggcggacaa ctatatgcgg gggttgccaa gctaggtcaa cggcgcaggt ctcgtgaaaa
     2401 gcgagtgcga agcttagaat ggataacatt caatattcct agatccctgt tccttaggga
     2461 ttcgtgggtt caaatcccac cccccgcata cattttaaaa atttcaggca attctaattc
     2521 taattactct gcttatgtga attgccttat agaaaacttg cctacaggat gatttaatca
     2581 agaactacaa agttttttgt ggttttcatc atgaaagtga atttcacaga aatctgcgtt
     2641 acatttgtaa caatgccatc ctgataaagt atagcaaacg gagcattttc gcgtgggatt
     2701 attataatca aaatcccttc ttgatttttt ggaagtttta tgtttctgct caggactcat
     2761 atcttgcaaa ccaaattgga aaggtcaaac gttgagaaca tatccctgtt atttttttag
     2821 acataaattc actaaaagtg tatttatcat cgcattacaa ttggaatcag cttatttaag
     2881 cattagcgtt a
//
LOCUS       DASPFX010000282         3228 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1594748, whole genome shotgun sequence.
ACCESSION   DASPFX010000282 DASPFX010000000
VERSION     DASPFX010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1594748"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..1850
                     /locus_tag="VD694_06205"
     CDS             72..1850
                     /locus_tag="VD694_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HXW12335.1"
                     /translation="MDNSKFADKVIVVTGSGTGIGQAIAKKFAENGASIILLGRRKEP
                     LEQTRSELERIVSSTESNGKIRIFPGVDVSDEIAITEMFGTIAKEVGPIDILVNNAGV
                     SGPVKLFTNSNFNEFKECVNIHLTGTFWTTSKCIENMRKDSKVITISTFFTEENKYEQ
                     RPYRFRTPYTSAQGAKNRLAEAFAWELVPDGIQSVATNPGPVHSDRIYKTVYPKAAAE
                     FLRIGGFPGLSSVEIEKTLQRLLNVLGEDQAIIDKETESVLQDVFAERIKNQDDKAKL
                     TSTLGQILSKTQEIAEKIQINTKKMIVDKEFLSQDQVAEMVLNLSSEKMSKLLNGRVI
                     PNDRVFYPTRPIVGTSIRQEVADISNKVIVLVVNSSAKKDLNRAKSIADSLVKSVKQL
                     VILTKDGKDMSHFKDFHAHSVNLSSEDSVKRMFDVISEKFSSVDGVVLLTGEHDYNVA
                     LKSLDRKQWDQLVEDYLLVPALITRESATHMAPKGAVTEPSLFKGSTGSIIIVGPDSP
                     VGDKISGVVRARSEIFRGALRPFNATVNQELRDVIKSDIRQYLLLAGNIDGQEPKEDK
                     ISNMILSILSQSDGGNNQTIFYVDES"
     gene            1944..>3228
                     /locus_tag="VD694_06210"
     CDS             1944..>3228
                     /locus_tag="VD694_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HXW12336.1"
                     /translation="MTDTFVLDTSVIIEGKVPEIINDKIRAGSKIIIPIAVLDEIQAQ
                     ASTNKSQGVQGLLEIKKIRDLCEAKKIDLEFSGTRPTIEEIKLAKHGRIDAIIKDIAL
                     DNDATLITCDYIQHLVTEAHGIKSLHISSLKEVSKLRFEKYFDNDTMSIHLKQETYPF
                     AKRGVPGNLKLVRLEENKLTADEIHDITKEILEHSRSKNGFTEINKEGATVIQLGKYR
                     IAITKEPFSNGQEITIVKPVAKLTLEDYGLSEKLLARLTSDVEGVIIAGPPGSGKSTL
                     ASSLAEFYVAQNKIVKTFESPRDLQVPKEVTQYGPLEGSFENAVDILLLVRPDYTIFD
                     EIRRYRDFQVFSDMKLAGVGMIGVIHASKPLDAVQRFIGRIELGMIPQILDTIIFMDA
                     GMVKKVYEILLTVKVPYKMTEADLARPVVEVKDFTT"
BASE COUNT         1140 a          544 c          674 g          870 t
ORIGIN      
        1 cggatcctcg ctatatttaa tagtgtattt aatatgcctt caacttatgc gtaaagggga
       61 tggactctca tttggataat tccaaatttg ccgataaagt catagtggtc acgggtagtg
      121 gaacaggaat aggccaagca attgcaaaga aatttgctga aaacggcgca agcataattt
      181 tgcttggaag aaggaaggaa cctctggaac aaacacgttc tgagttggaa aggattgtat
      241 caagtacaga aagcaatgga aaaattcgga tatttccggg ggttgatgtc tccgatgaaa
      301 ttgctataac agaaatgttc ggtactattg caaaggaagt cggaccaatt gacattcttg
      361 tgaataatgc aggagtatct ggacctgtaa agctgtttac taattctaat tttaatgaat
      421 tcaaggaatg tgtaaatatt catttaactg gcacattttg gacaacatca aagtgcattg
      481 agaatatgcg aaaggattct aaagtaatta ctatttctac tttctttaca gaagaaaaca
      541 aatacgaaca gagaccttac agattcagaa caccttatac aagcgcacaa ggagcaaaaa
      601 ataggttagc cgaagcattt gcatgggaac tagtacctga tgggattcaa tccgtggcga
      661 ctaatccagg tcccgtccat tccgaccgca tctacaaaac tgtatatcca aaagcagccg
      721 cagaattcct tcgaatagga ggctttcccg gactgtcatc tgttgagatt gaaaaaacct
      781 tgcagcgtct cttgaatgtc ttaggagagg atcaggccat tattgataaa gaaacggaat
      841 ctgtccttca agacgtattt gccgagagga taaaaaatca agacgataaa gcaaagttaa
      901 cctcaacact tgggcagatc ttatcaaaga ctcaggaaat cgctgaaaaa atacagataa
      961 atacaaagaa aatgattgtt gataaagaat ttctatcaca ggatcaagtt gcagaaatgg
     1021 tactcaatct ttcatctgaa aaaatgagca agttattgaa tggtagggtg atcccaaatg
     1081 atcgagtttt ctatccaaca cgtccgatag tcggaacatc aattcgccag gaagtcgcag
     1141 atatttcaaa taaagtaata gtactggtag taaattcttc ggcaaaaaaa gatcttaacc
     1201 gagcaaaatc catagccgat tctcttgtga aaagtgtcaa gcagttggta attctaacta
     1261 aagatggcaa agacatgagt cattttaaag atttccatgc ccactctgta aatctgtcaa
     1321 gtgaggattc tgtgaaacga atgtttgatg ttatttctga aaaattctct tcggttgatg
     1381 gggtagtatt gctaacaggt gaacatgatt ataatgtggc gctaaaatcc cttgaccgga
     1441 aacagtggga tcagttggta gaggattatt tgcttgtgcc agcattaata actagagaat
     1501 ctgcaactca catggctcca aaaggtgcgg ttacagaacc atccctattc aagggatcaa
     1561 caggctcaat aataattgta ggacccgact ctcctgttgg agataagatt tcaggtgttg
     1621 ttcgtgcaag gtcagaaata tttaggggcg cccttagacc ctttaacgca actgtaaatc
     1681 aagaattacg tgatgtaata aagtcggaca taagacagta tttgctgctt gcaggaaaca
     1741 tagacggtca agaacctaaa gaagacaaaa ttagcaatat gatattgagt attctctcac
     1801 agtcagatgg tggaaataat cagacgatat tttatgttga tgaatcgtaa aacaattaga
     1861 gcacgaaact ttacgataga ttcccaccct ttgttccaat tttataaaaa agcaaattaa
     1921 tccacaagtt atagtttaat cagatgacag atacattcgt tttagatacc agtgtaataa
     1981 ttgaaggaaa agttcccgaa attattaatg acaagattag agcaggatcc aaaattatta
     2041 ttccaatagc cgtcctcgat gagattcaag cacaggcatc gacgaataaa tctcaaggtg
     2101 tgcaaggatt gcttgaaata aaaaaaataa gggatctttg tgaggcaaaa aaaatagacc
     2161 ttgaatttag tggaaccaga cctacgattg aagaaatcaa attagctaag catggaagaa
     2221 tcgatgctat aattaaagac atagccctgg acaatgatgc aacattaatt acgtgtgatt
     2281 atattcaaca tttggtaaca gaagctcacg gtatcaaatc attgcacatt agttctctca
     2341 aagaagtttc aaaactgcga ttcgaaaaat attttgataa tgataccatg agtattcact
     2401 tgaaacaaga aacttaccca tttgcaaaaa ggggagtgcc aggtaatctg aagctagtac
     2461 gactggaaga aaataagtta acagctgatg aaattcatga tattaccaaa gaaatcctag
     2521 agcattcacg atcgaaaaat ggattcactg aaatcaataa ggagggagca actgttattc
     2581 agctaggtaa atacagaatt gcaataacta aagaaccatt ttcaaatgga caagaaatta
     2641 cgattgtaaa accggtagca aagttgacac tagaagatta tggactgagt gaaaagttat
     2701 tagctagatt gacatcggat gttgaaggtg tgataatagc aggacctccg ggatctggca
     2761 agagtacact agcaagtagt ctggccgaat tttacgttgc tcaaaataag attgtaaaga
     2821 cttttgaatc tcccagagat ttacaagtcc ctaaagaggt aacgcaatac ggtccgctcg
     2881 aaggaagttt tgaaaatgca gtggatatcc tgttactcgt tcgtcctgac tacaccatat
     2941 ttgatgaaat aagacgttat agagattttc aagttttttc tgacatgaag ttggctggag
     3001 tagggatgat aggcgtcatt cacgcaagca aacctttgga tgcggtgcaa agattcattg
     3061 gaagaattga actaggcatg ataccacaaa ttcttgatac tattattttt atggatgcag
     3121 gcatggtaaa gaaggtttat gaaattttgc ttacagtcaa agtaccttac aaaatgacag
     3181 aagcagacct tgccagacca gttgtagaag tcaaggattt tacaacag
//
LOCUS       DASPFX010000283         7882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2058798, whole genome shotgun sequence.
ACCESSION   DASPFX010000283 DASPFX010000000
VERSION     DASPFX010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7882
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2058798"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1411)
                     /locus_tag="VD694_06215"
     CDS             complement(<1..1411)
                     /locus_tag="VD694_06215"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HXW12337.1"
                     /translation="MKKEVLNYPDKKHFSPKSNSRWGKEEETEIFGQNVKLFRKGKMN
                     EDDFRRFRLQHGAYGSRLQQNYSMIRIKIPSGEITPEQLQKIAMLSEAFSIGSAHVST
                     RQNIQLHWVQLEDVSEVMRGLVEVGLTTREACGNTVRNVMCSHFAGVCPDEEFDSTPY
                     AMAIARFFLRNPVCQNLPRKFKINFACCANHGLVRIADIGLIPMKKEGTNGFKIYLGG
                     GLGAASFIGHQLEEFTPEERLVSTCMAVVRLFDRLGNRENMARNRMRYLVNEMGWEKF
                     QKLVIKERKNVEMTISLETLNRYKVDLESPVIKQLSNGKKLPLINEKVDINSDPYKRW
                     IHSNVVSQKQNGYFVVFVTLGAGDITSNQLRSLAKTIQTYSGEGCARNTPNQNFAVRF
                     VKARDLPEFYNELAKSGLANPGALTMSSAVGCSGTTSCNLAITNSHRLAKEIQSKFLE
                     LGLDTEDDLRDSTIKISGCP"
     gene            complement(1642..1716)
                     /locus_tag="VD694_06220"
     tRNA            complement(1642..1716)
                     /locus_tag="VD694_06220"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1679..1681),aa:Val,seq:cac)
     gene            complement(1789..3039)
                     /locus_tag="VD694_06225"
     CDS             complement(1789..3039)
                     /locus_tag="VD694_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HXW12338.1"
                     /translation="MNYRIKDLNLAEEGKKKIDWAEVHMPVLSGLKKKFKLNSPLDGV
                     KVAGCLHVTKETGVLIRTLRDLGAELAWCGCNPLSTQDDVAAALVEEGISIFASRGVS
                     NEQYYEDIHATMAINPNITIDDGADLTVEMHNSTANISQIYGGTEETTTGVVRLRAME
                     KNGKLKYPIMAVNDAETKHDFDNVYGTGQSALDGVIRATNILISGKNVVVCGYGHVGK
                     GIARRAAGLGANVIITEIDPIAALKAKLDGYSVLPMVTAAATGDLFVTTTGCKDVIRE
                     EHILRMKDGSILANAGHFNVEISVDALKANSKSVKQINQNTTEYELEKGNKVYLIGEG
                     RLVNLVAAEGHPSEVMDMSFANQLLSAIKLIHSKGSLSPAVYDIDRAQDQEIARAKLE
                     SMDINIDTLSEEQHTYLIGFSEGT"
     gene            3232..3759
                     /locus_tag="VD694_06230"
     CDS             3232..3759
                     /locus_tag="VD694_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00725 family protein"
                     /protein_id="HXW12339.1"
                     /translation="MKNMRRLQIAVIGYNHDKSSEKTNEIAYQVGTEIAKANAVLICG
                     GLGGVMENACRGAKENGGLTVGIIPQGEAKFANKFCDVVIATGIGYARDFVVATSADG
                     IIAVGGGVGTLIELCVGYMLKKILVTIPSSGGTAENFGGKYLDDRKRVFVQTSQDAQS
                     AVKIISDYFGSQEES"
     gene            complement(3792..4958)
                     /locus_tag="VD694_06235"
     CDS             complement(3792..4958)
                     /locus_tag="VD694_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HXW12340.1"
                     /translation="MKFGVSLLPQINKITVLGSGIMGHGIAQISAMNGYDVVLRDIEQ
                     KFLDNAMSRIRWSLDKMVEKNKINKQESDKIHGRIKPIVDLKEALQDTDLLIEAVPED
                     LKLKKKVYSEVDQFAQEKTIYSSNTSTLPISEISQLTSRPDRFIGLHFFNPPQLMKLV
                     EVIPGVSTDKSIVDLGINFVKSLSKDPILCNKDVPGFIVNRIFIPLVHEAAYSLENDG
                     KSMTQIDSAVKFKLYLPMGIFELADYTGLDVIHKATFEMYSRDKKVVNPHPRIEQLFS
                     SGKLGKKSGEGFYSYGDENYERVPLSEEEARQYDPIRILSVAINNAAWLISNGVCTRE
                     DVELALKLGMGLKKELFEIGKENGFEKIVSTLSQLQEKNGSFYAPDPYLRTVSN"
     gene            5063..5584
                     /locus_tag="VD694_06240"
     CDS             5063..5584
                     /locus_tag="VD694_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF367 family protein"
                     /protein_id="HXW12341.1"
                     /translation="MISPFALLLNQDDPKKCSALKLIRFGAVSPTNSIRDKMLVLNPF
                     ANEVVCKSDKTLIDSICVIDCSWNKADGVLTNHKFLRKGIPRKIPALLAGNPINYAKL
                     GKLSSVESLSACYYVLGEKNFASNLLDKFKWGHTFLELNHDALEDYSLADNRDDITKI
                     EIDYFGSYSLKNE"
     gene            complement(5708..6124)
                     /locus_tag="VD694_06245"
     CDS             complement(5708..6124)
                     /locus_tag="VD694_06245"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HXW12342.1"
                     /translation="MWKSDNLQDEDVELKVETILNPSEDPEKVKKCLLNVANGCSPMV
                     TDGHVEATCKGIMSLHHIRVGVRSKSSLGVLRKLLDWNRTGNVTWFYLNKQAAYAGVI
                     SLAENYEESPLGPIRITVTSNDLDKLIEWLLSNRKE"
     gene            complement(6145..6729)
                     /locus_tag="VD694_06250"
     CDS             complement(6145..6729)
                     /locus_tag="VD694_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW12343.1"
                     /translation="MPEDILIVALTGMPGAGKTTVANYLAQKGIPLLIMGDAVREAAQ
                     NDGLEPTSDNLAKLMLRLREQNGPEAIAHLIANKIKNMKYENKEFGVVIVDGIRSMAE
                     IQVLKRVGNVKLLAIHGSTFTRYSHIKERARSDVPSNIGEFDKRDKVEMGVGISDAIA
                     LADETISNNDISISELCDLSFHIVQKWMDENKIK"
     gene            complement(6764..6994)
                     /locus_tag="VD694_06255"
     CDS             complement(6764..6994)
                     /locus_tag="VD694_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histone"
                     /protein_id="HXW12344.1"
                     /translation="MTEYPELGLAGMYRIIKKSGGERISEEAADQLRMILETVATKIS
                     DQAVALASHAGRKTIKAEDIQLAEKNLLNLIH"
BASE COUNT         2290 a         1560 c         1357 g         2675 t
ORIGIN      
        1 ttggacatcc acttatcttt atggttgagt ctctaaggtc atcttcagta tcaagtccaa
       61 gttcaaggaa tttggattgg atctcttttg ccagtctgtg agaattggta attgctaggt
      121 tgcatgaagt tgtgccagaa catccaacag ctgatgacat agtcagtgca cctggatttg
      181 caagtcctga tttggcaagt tcgttataaa attctggtag atccctggct ttaacgaatc
      241 ttactgcaaa attttgatta ggagtattcc ttgcacaacc ctcgccagaa taagtttgaa
      301 tagtctttgc aagggaccgg agctgatttg aagttatatc tcctgcacct aacgtaacga
      361 atactacaaa gtaaccattc tgtttttggg aaaccacatt ggagtgaatc catctcttat
      421 acgggtcact attgatatct actttttcat taataagagg taatttctta ccattggaca
      481 attgcttgat gacgggactt tccaagtcta ctttgtatct atttagtgtt tcaagcgaaa
      541 ttgtcatttc tacatttttc ctctctttga ttaccaattt ctgaaacttt tcccatccca
      601 tttcattgac caaatatctc attctattcc tggccatatt ttcacgattg ccaagtctat
      661 caaacagtct cactacagcc atacatgttg atacaagtct ttcttcagga gtaaactcct
      721 ctaattggtg ccctatgaat gaagcagctc caagaccacc accaaggtat atcttgaatc
      781 cattagttcc ttccttcttc atcgggatca gaccaatatc cgcaatcctt actaagccgt
      841 gattggcgca acatgcgaaa tttatcttga atttccttgg caggttttga cacactggat
      901 ttctaagaaa gaatcgtgca attgccatgg cataaggagt tgaatcaaat tcctcatctg
      961 gacacacacc ggcaaaatgg ctacacatga cattccttac tgtattgcca caagcctctc
     1021 ttgttgttaa tcctacttca actaggcctc tcatgacttc acttacatct tcaagctgca
     1081 cccaatgaag ctgaatgttt tgacgagtcg aaacatgagc tgatccaatt gaaaaggctt
     1141 cagaaagcat agcaatcttt tgtaattgtt ctggagttat ttctccgcta ggaattttaa
     1201 tcctaatcat actgtaattc tgttgtaagc gtgatccata ggctccatgt tgaaggcgga
     1261 aacgtctgaa gtcatcctca ttcatttttc cctttctgaa taatttgacg ttttgaccaa
     1321 aaatctcagt ttcttcttct tttccccatc ttgaattaga ttttggagaa aaatgctttt
     1381 tatcaggata atttagaact tcttttttca atactaatct aatttctttt tcaaaaccat
     1441 atatttttta tggatttaac tatttttggc attctaaatg gattgatagg gcaaattatt
     1501 actctaccca atccgtattc gtatctatcg gtgagatgaa atagtcctgt gatgattcaa
     1561 aattaagaga aattttgggg cttggtttga ttctagtact ttacgaattg atatttcaaa
     1621 actagagcag atcataaaaa gtggatgggg agagatttga actctcgacc acctgtgtgt
     1681 gagacaggta tcataaccag tctagaccac ccatcccaaa tttggttaat gttttcccaa
     1741 ttaatatctt gataaattta tagtgacatg aaaatatggg attttacttt atgttccctc
     1801 actaaaacct atcaagtaag tgtgttgttc ttccgaaagg gtatctatgt taatgtccat
     1861 cgattccaat tttgctctcg caatttcctg atcttgagct ctatctatat catatactgc
     1921 tggagaaagc gatcccttag aatgaatcaa ttttatggcc gaaagaagct ggtttgcaaa
     1981 gctcatatcc ataacctcag aaggatggcc ttctgcggcg actaaattca ccaatctccc
     2041 ttctccaatt agatatacct tatttccctt ctcaagctca tattctgttg tgttttggtt
     2101 aatttgtttt accgactttg aattggcttt gagtgcatca acagaaatct cgacgttgaa
     2161 atgtcctgcg ttggccagaa tacttccatc tttcatccga agtatatgtt cctcgcggat
     2221 tacgtcctta catcctgttg tagtaacaaa tagatcacct gtcgccgcgg cagtaaccat
     2281 cggcaaaaca gaataaccat caagctttgc tttcagtgcg gcaataggat caatttcagt
     2341 tattatgaca ttagcaccaa gtcccgctgc tcttcttgct attccttttc ccacatgccc
     2401 atatccacaa acaacaacat tttttcccga aatcaggatg ttagtggctc taataactcc
     2461 atctagggct gattggcccg taccataaac attgtcaaaa tcatgcttag tttcagcatc
     2521 gtttacggcc attattggat attttaattt accatttttt tccatagctc ttaatctaac
     2581 aactcctgtg gtagtttctt ctgtcccacc gtagatttgg ctaatatttg ccgtggaatt
     2641 atgcatttca acggtgagat ctgccccgtc atcaattgtg atattaggat taattgccat
     2701 agttgcatga atatcctcat aatactgttc attcgaaaca cctctacttg caaatatcga
     2761 tattccttct tcaacgagcg cggcagcgac atcatcttgt gtacttaatg gattgcaacc
     2821 acaccatgct agttctgccc ccaaatctcg taatgtacga ataagaacac cggtttcttt
     2881 cgtgacatgt aagcatcctg caaccttaac tccatctaaa ggactattca gtttgaattt
     2941 ttttttaaga ccagataata ctggcatatg aacctctgcc caatcaatct ttttctttcc
     3001 ttcttcagct aaattaaggt ccttgattct gtaattcatt catctcagtg acctattgcg
     3061 gacatattat tcttcacatc aaatcggtat tctctgaaat tcggggcctt agcttgaata
     3121 atgatgataa gaaattgatg taagtactga acagtgcatc ggttgatgtt aagcaacaag
     3181 aaaagaattt gcgcaaacta acattataat aaatatgtga attaaattat catgaaaaat
     3241 atgagaaggc tccaaattgc agtcattgga tacaatcatg ataaatccag tgaaaaaaca
     3301 aatgaaatag catatcaggt tggaacggag atagcaaagg caaatgctgt gttaatttgt
     3361 ggaggtctgg gcggtgttat ggaaaacgca tgtagaggag caaaagaaaa tgggggttta
     3421 accgtcggaa tcatccctca gggagaggct aaatttgcca acaagttttg tgacgttgtt
     3481 attgcaaccg gaatagggta tgccagagat ttcgtagtgg cgacatctgc agatggaatc
     3541 attgccgtag gtggaggtgt tggtaccctg atagagctat gcgttggata tatgttaaag
     3601 aagattttgg taacaatacc aagtagcggt ggcactgctg aaaactttgg tggaaaatat
     3661 cttgatgaca gaaaaagagt attcgtacaa acctctcaag atgcccaaag tgcagtaaaa
     3721 ataatatcag actattttgg ttcacaagaa gaatcgtagt gatgatacca aaaatggaaa
     3781 tataagttgc actaatttga tacggtcctt aggtaggggt caggagcata aaaagatcca
     3841 tttttttctt gcaactgact caaagttgat actatttttt cgaatccatt ttcttttcca
     3901 atctcaaata gttctttttt gagacccatt cctaatttca aggctaactc gacatcctct
     3961 cttgtacata cgccgttgga aatcagccac gcagcgttat ttatcgcaac tgacaaaatc
     4021 cttattggat cgtactgtct tgcttcctct tcagacaatg gcaccctttc gtaattttcg
     4081 tcaccgtagg aatagaaacc ttcccctgat ttttttccaa gtttccccga tgaaaacaat
     4141 tgttctattc taggatgcgg gtttaccact tttttatcac gagagtacat ttcaaatgtc
     4201 gccttgtgta taacatcaag tcccgtataa tcagccaatt cgaatatgcc cattggaagg
     4261 tacaatttga atttcactgc cgaatcaatt tgggtcatac ttttaccatc attttctagg
     4321 ctgtaagcag cctcgtggac caatggtatg aatattctat ttactataaa gccaggaaca
     4381 tctttgttac acaaaatagg atcctttgac aatgatttta caaaatttat tccaagatcg
     4441 acaatagatt tatctgtact tacccctgga atgacctcaa ccaatttcat caattgcggt
     4501 ggattaaaaa aatgcaatcc tatgaatctg tcaggtctac tggttaattg agatatttca
     4561 ctaattggta aagtgctagt attggacgaa taaattgtct tttcttgcgc aaattgatcc
     4621 acttcagaat agactttttt ctttaatttg agatcttcag gaacggcttc gataagcaag
     4681 tcagtatctt gcaatgcctc tttcaggtca actattggct ttattctgcc atgaattttg
     4741 tcagattctt gtttgtttat cttgtttttt tccaccatct tatctagtga ccatcttatc
     4801 ctactcatag cattgtccaa aaatttttgt tcaatgtcgc gcaatactac gtcatatcca
     4861 ttcattgcag aaatctgtgc tataccatga cccattattc ctgaacctag aactgtaatt
     4921 ttatttatct gtggcaatag tgatactcca aatttcatga tttttaatgt tgcgattcct
     4981 ttgtcaaatt atataataac aataaccccg acatgtctcg aaactatttt attgataatt
     5041 gcctttcatt attagattac agttgataag tccatttgcg cttttactaa atcaagatga
     5101 tccaaagaaa tgtagtgcat taaaattaat tagatttggc gcagtttcgc ccacaaattc
     5161 tatacgagac aaaatgcttg tattgaatcc ttttgctaat gaggtggtct gtaaatcaga
     5221 caagactttg atagattcta tctgtgtaat tgactgctcc tggaacaaag cagatggtgt
     5281 tttgacaaat cacaaatttt tgaggaaagg cattccaaga aaaataccag cgctattggc
     5341 aggaaatcca attaattatg cgaaacttgg caagttgtca agtgttgaat ctttatcagc
     5401 atgttattat gtcctaggag aaaagaactt tgcatcaaat ttgcttgata aattcaagtg
     5461 gggacataca tttttggagt taaatcatga tgcattggaa gattattctt tagcagataa
     5521 cagagatgac ataacaaaaa ttgaaataga ctactttgga agttatagct tgaagaatga
     5581 gtaggtacgt agtgtcctga catagtttat tcattgtttt tctttgccca attcatagtt
     5641 gcgacattgg gtatctatta aatgtaattg tgagaaattc gaatattaat ctgaacataa
     5701 aaatgtttta ttcttttcta tttgatagta accattctat taacttgtca agatcattgc
     5761 tagtgactgt aatccgtatg ggaccaaggg gtgattcctc atagttttcg gcaagtgaaa
     5821 tcacccctgc ataagctgcc tgtttgttca aataaaacca cgtgacattc cctgttctgt
     5881 tccaatccaa gagttttcta agaactccta gtgaggattt tgatctcacg ccaacccgaa
     5941 tatgatgtag tgacataatt cctttgcagg tagcttctac atgtccatct gttaccatgg
     6001 gagagcatcc attggccaca tttaatagac atttcttcac tttttctgga tcttcagatg
     6061 gattaagaat agtttctact tttaattcaa catcctcatc ttgaagatta tctgatttcc
     6121 acaactatta tcatcactag caagctattt gattttgttc tcatccatcc atttttgtac
     6181 aatgtggaaa ctaagatcac atagttctga tattgaaata tcattatttg aaatagtttc
     6241 atctgctaag gcaatggcat cgcttattcc tacgcccatt tcgaccttgt cacgcttatc
     6301 aaactcgcct atattagatg gtacatccga gcgtgccctt tccttaatgt gtgaatacct
     6361 tgtaaaagtt gaaccatgta ttgctaacaa tttgacattg ccaacacgtt ttagaacttg
     6421 aatttctgcc atacttctaa ttccgtctac tatcactaca ccaaactctt tgttttcata
     6481 tttcatgttc ttgattttgt ttgctatcaa atgtgcaatt gcttcaggcc cgttttgctc
     6541 tctcagtctt aacattaatt tagcgagatt gtcactagtg ggttccaatc catcattttg
     6601 agcagcttct ctcactgcat cacccataat caacagtgga attcctttct gagctaaata
     6661 attagcaact gtagtttttc cagctccggg cattcctgtt aaagctacaa ttagaatatc
     6721 ttctggcatg acaaaatcaa gcgactatgg tatttctcac taactaatgt attaagttta
     6781 gcaaattttt ttctgctagt tgtatgtctt ctgctttgat tgtctttctt ccagcatgtg
     6841 aagctaaagc cactgcttga tctgaaatct tagtagcaac cgtttcgagt atcattctga
     6901 gttgatcggc tgcttcttca ctaattcttt ctcctccaga tttctttatg attctataca
     6961 tgcccgcaag tccaagttct ggatattctg tcatttctca taaagtattc atagattgca
     7021 ttaaagtatt ctgtcaaaaa agagagagtt caaaataaac tatagcagcc ataaaaatat
     7081 attaataaat gcaatattat ccgaatatct ttccctcctg ccgcaatcca atctaagcac
     7141 acttgaaaaa tacgttatag atgtcattac caagagaact tgatggttct caaatggcag
     7201 caataaacgc agtaagggca atgagttgat tgtgagtcaa aaacaagaat aattccatat
     7261 tgtcgtccct gtcttcattt tctcgtactt tgctaatatt aattctaaag aaagacctca
     7321 tttgttgtat caaaagtaca tcgagcatta taggaataat attaaattgt ctatggtgcc
     7381 attcttttaa tatgttggca aagattagta aatagtaacg atattgagaa gtcgtattgt
     7441 gtttgttctt ccactttgaa agcgaactaa cttttgagga gcaatcctga tgaactaata
     7501 atttgtctga ttgttttttt ctttaaacta agattgactt tcttggttag caaacttgca
     7561 ggaactagta tttcttttgg agcaagttta tccaaaaatt acgctactct tgttatctcg
     7621 atatcgcggg cgcaaatatc atacctagtt tgaggagatg tcttaaatcc tattcttata
     7681 ttgagtcttc ttacccgctg gtttagtgtg cgggtgccgt gcattcgcat ctacagttaa
     7741 agggatcttt tgcatctgcg atgcagatgc aaccttcaac acattcagcg acacacattc
     7801 cggcgccaca ttttgcaatc attcttaaat ttgatgcctg aattcttata taaggatata
     7861 tgaacccatt taaaggacta tt
//
LOCUS       DASPFX010000284         2141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1467602, whole genome shotgun sequence.
ACCESSION   DASPFX010000284 DASPFX010000000
VERSION     DASPFX010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1467602"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(339..755)
                     /locus_tag="VD694_06260"
     CDS             complement(339..755)
                     /locus_tag="VD694_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12345.1"
                     /translation="MISDERYHLYCKEGSKNIVNQLQPKKERVRGQVLINTEESSMIQ
                     RNKVGLEKHENDDNNAISLSSNRWNDYLISSFSSFVKSVHDNQDQLNEQLRYSSVNLS
                     SSYLSTFFEYLKLINNYWMKVYTHSSYKLLANRLST"
     gene            complement(1179..1607)
                     /locus_tag="VD694_06265"
     CDS             complement(1179..1607)
                     /locus_tag="VD694_06265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12346.1"
                     /translation="MKTTKTTIAIALLGISLILLVLYGIDVAIIFSSDSGQTTEDSRG
                     FLPLDERTRGTAFGGSAVIMSIIAFVIARKERSNIISILLFVNGGLIIVGILAVSGGL
                     GATSLASTIAMGIILVGLGIWKVLIDRRTPTTQDYRSKIR"
BASE COUNT          706 a          381 c          348 g          706 t
ORIGIN      
        1 aaagagtaag agagaattaa agaatacact agatctgctg aagccgagat aatcttcaag
       61 tctgctctga tgcatattct attggaggct taccagatcc gcaatagcat cttttacatt
      121 attttcgacc cttgattgct aagaccaggt aaatgggttt taattgtttt taatagtttt
      181 gcgtcgatga gaaagaaatc aaaaatagga attaatgagc agacacagga tcgattatga
      241 atggaactaa ctagtcttat cttgtgtgaa tatcggtatt ttctcatgac ttatactaga
      301 tctagtttga accaaatctc gaactattta atctgccttt aggtactgag cctgtttgcg
      361 agcagcttat aactgctatg agtatatacc ttcatccaat aattattaat tagttttaag
      421 tattcaaaaa aagttgatag atatgaagat gatagattaa ccgatgaata tctaagctgc
      481 tcgttcagtt gatcttgatt atcatggaca gacttaacaa atgaggaaaa tgatgatatt
      541 agataatcgt tccatctgtt agatgacaaa cttatcgcat tattatcatc attttcatgc
      601 ttttcaagtc caactttgtt cctttgaatc atactagatt cttctgtatt aattagaact
      661 tgtcctctta cccgttcctt ttttggctgt aattgattaa caatattttt tgatccttct
      721 ttacagtaaa gatgatatct ctcgtctgaa atcatgttac aagacgaaca tacaaatcta
      781 acaacctgat tgcacacctt gcaataagaa aaaggcacta gatcagatcc gcatctcaca
      841 cacgaggtag aactcattct ttattaatat taaacataac gacgatgtat cctttatacc
      901 ttgactatag atttcattct ttagattgat acaatacatg aaaaatgtac tagtttgcgt
      961 ccttatttag atagatagaa taaacattat cttcactttt caatagaatt tggaggctag
     1021 aaggaattct gtattagaag gaagtcaaaa aattcgactc ttttttatgg attattttca
     1081 ttattaacga cagctatagt gatgataatg tgaaataata cctcctcaaa atagatcagt
     1141 ggtaaaaata aaataacaca acataaaata agatgatgtt acctaatctt tgatctataa
     1201 tcctgtgttg tcggggtcct tctatctatg agaaccttcc atatacccaa acctacgagg
     1261 ataatgccca tcgcaatggt tgaagccaat gaagtcgctc ccagcccacc agatacagca
     1321 aggatgccaa ctataattaa tcctccattt acaaatagca atatcgaaat tatgtttgat
     1381 cgttcctttc ttgcaattac aaaggcaata attgacatga tcaccgcgct tccaccaaag
     1441 gccgtacctc ttgttctctc atctagtggg agaaatcctc gtgagtcttc tgtagtttgg
     1501 ccggagtcag atgagaaaat tatagcaaca tcgattccgt acaatactaa caatatcaat
     1561 gaaattccca gtaaggcgat tgcaatagtt gtctttgtag ttttcatcta tcgactatca
     1621 tttgtagaaa tttcacatat attaatgata tagtacggcc aaataaagta tgagaagatt
     1681 gactgaaatt aactattaat ctgtctttag aaatgagttt atcagcaaca acatcaccta
     1741 ttccattaca aagctttctc aattttcagc tcattataaa caacatagtg tgcgatcaca
     1801 taatgaaatt tgtaaaaaga gtaggagaat taggctaacg taaataaacc gacaaaaatg
     1861 gtttatatat ctggctcatt agcttctaac gctctactta tctaccgtac ttagtaaatg
     1921 aaatttgagc acatgtcttt ttatgtacat gcgtcgacgt cagtctaact tatggaactt
     1981 gctactattt caattagatt aggtatccta taggactttc tgaagctacg ccatacttag
     2041 ctatcagtca attaggcgag gttatgttag ctacatcgac agtgtatttc agatcatctg
     2101 gatagaataa tattccagtt gtcgggtttg tcaaacttgc t
//
LOCUS       DASPFX010000285         3545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1778255, whole genome shotgun sequence.
ACCESSION   DASPFX010000285 DASPFX010000000
VERSION     DASPFX010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1778255"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            454..654
                     /locus_tag="VD694_06270"
     CDS             454..654
                     /locus_tag="VD694_06270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12347.1"
                     /translation="MVWKNGSILHDLPTKRYECGYCEIIVTKYVDGSYETTKPNADTY
                     GDNNNNTSHKKSSRFRKMLHIK"
     gene            complement(893..1189)
                     /locus_tag="VD694_06275"
     CDS             complement(893..1189)
                     /locus_tag="VD694_06275"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HXW12348.1"
                     /translation="MTWDFHDFPGAFPVHVKQTIKNKKIVLEWANSGNTQVVMNFEAL
                     DKDSTLVRIEEYGWKNQIRESLDESYSHCQGWMQMLCCLKVYVEFGKNLREFLF"
     gene            complement(1769..2140)
                     /locus_tag="VD694_06280"
     CDS             complement(1769..2140)
                     /locus_tag="VD694_06280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12349.1"
                     /translation="MSGPNEVLSRFGELEDAIKTHYGKVDPRLLVDMIFRQRGSKKDP
                     IYTLEVFIKPNQNTDQIREMIIERTGMVPAFYDSGTHIVVAHKVSFELLKEIKDIDWV
                     ESIKGTYSGSGIASIGPTYER"
     gene            3153..3533
                     /locus_tag="VD694_06285"
     CDS             3153..3533
                     /locus_tag="VD694_06285"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12350.1"
                     /translation="MLHVVPEIYVPPTLFDRDVNNKSKVTGERLTSQQYLKEYYHEME
                     SEAKKTLETKKSKEVEPANIMIRTYVTYGYPSDKILEFSNKHQVNLIVIGSIGLTGFS
                     RIKALGSVARGISERAKGPVMIVR"
BASE COUNT         1130 a          643 c          646 g         1126 t
ORIGIN      
        1 aaattaatgt aacaataaag cccatttata catcttaatt aataatctgg aagaatttat
       61 gaatgaaata ttgtaagacc tgaacaattt ttgtatatca ttttaactat tgaacttgcg
      121 tttccttcta aacataagtt gcaagcttgt tcaatgaatt ttattaatga ttcgcatttt
      181 gataagatgc gatgaggaaa atcattaatc ggctaattcc tacgttgctt tttcttattg
      241 tcacgaaagt gcaggaagca catcatagta atttcttact ggattagctg agctaaaatt
      301 gatgagaatg tcccactctt agaattctct cttgaattcc catttaatct gaatagacac
      361 tacaaaatgg actattaaat ggagtactta ataaggagaa tattccattg tggtatactc
      421 atgactatgt attgtcctaa ctgtggtgct ctcatggttt ggaaaaatgg atctattctt
      481 cacgatctcc cgactaagag atatgaatgc ggttattgtg aaattatcgt aacaaaatat
      541 gttgatggat cttatgaaac aactaaacct aatgccgata cttacggtga taacaataac
      601 aatacttctc acaagaagtc atctcgtttc agaaagatgc tgcatattaa atgacctagc
      661 cctgacatgt ttcgggatga taaaaatatt tgaaaaattc aagagattga gtggtcactg
      721 agagtttgtt ttgtttagtg gtcgtcacat atacatattt caattccgac tcgtgcctaa
      781 ctgaagaagc tatctagaga gatttgctga aatagataag gattaattga cgaattcttg
      841 tgcatggttt tttgttgtaa actccaggta gagtgcgtat tatagacagg tattagaata
      901 agaattctct aaggtttttg ccgaattcta cgtaaacttt aagacaacaa agcatctgca
      961 tccatccctg gcaatgacta taagattcat caagtgactc tcgtatttga ttcttccaac
     1021 catactcttc aattctgacg agggtcgaat ctttatcaag ggcttcgaaa ttcataacca
     1081 cttgagtatt ccctgagtta gcccattcga ggacaatttt tttattttta attgtttgtt
     1141 tgacgtggac tggaaatgct cctggaaagt cgtgaaaatc ccacgtcact ttttttcctt
     1201 aatcgagagg gccactcgcc ccccctgttg tgaaatagcc acggagtttc ttagtaatac
     1261 gatgatgtgc tgcgctttat caagcaattt tggatattag aacttatatt tctaatgata
     1321 ggtggtcact ttcaccgctc aggtcttcct cctagcttgg tatgaaatta gtcgatcgta
     1381 aaattatacg catgatagta aaaaaaggag ggaattagtt cgcggcgatt agagcttcgg
     1441 ctccttgact gccaatatag atccctttca agttcatatc atttatcacc ttaattatat
     1501 caaactaaat cctgcgcgcc actacagcat gagcttcact attatagaat gtaggcatcg
     1561 tgctagttgt gttcattatc ctatttctta tttcttcagt gtaatttact attacgtatg
     1621 ataactgatg gcaacatagt cccaagctag tcagacaatt tcttaagcag gccttaaatc
     1681 acctcttgac ttaactaata cctgtatctg tggcaactga tttcaatctg tccaaatctt
     1741 tgctttctgc aaaaacgaat ctcgtcagct atcgttcata tgttggcccg atagaagcga
     1801 ttccactgcc actataagtc cctttgatcg actctaccca gtcaatatct tttatttctt
     1861 tgagtaattc aaaactaacc ttgtgtgcaa ctactatatg cgtcccgctg tcgtagaagg
     1921 ctggtaccat acctgtcctt tcaatgatca tctcccttat ttggtctgta ttttggtttg
     1981 gttttatgaa aacttcaaga gtatagatag gatccttttt gctacctctt tgtctaaata
     2041 tcatatcaac tagaagtctt ggatcgacct tcccataatg tgtctttatc gcatcttcta
     2101 gttctccgaa cctgcttagc acttcatttg gtccgctcat acaattgtaa atatttttgc
     2161 taacctttta acttaactcc tgatgttttc tgtaggcgaa gacagtcttc atttgatttt
     2221 tactttgaat acctaagaca gagcgtaaga ttctttcaga actatggatg aacctcttat
     2281 atgtcatgtt ttcgttgtga atattttaac agtgagatga gacctagatg ggagtgcatc
     2341 tattgtggca gtgtaatgga taagacaaac ttcgccgact tcgttaagca gagtgacgat
     2401 gacaagaata gtgttcgaga agcaagagtg cagtatcaca cctggctacg gttagcagac
     2461 tagataggaa cgcaagcata tgtaaacagc agagaataca tgactcaaat tatctaccgc
     2521 accggatcaa ataagtacca tactaaaatt atactattcg agaaatttgt ccagagataa
     2581 ttgtacaaga attggataca tccaatgata tagtactgca gatcatcaat aaggaagtac
     2641 ttaaaaacta cgaaaacagt aactgacctt catttacact taaatcaaga tcagaaagat
     2701 tacctttaaa taatttagat aatggagacc taattgattt ggagcaaaag gacgtgagtc
     2761 agtagagcca cagatagcac ccagtgttac tgatatccaa cgaataaagg aggagaaata
     2821 gggaagcacg actgccttac agtcccttaa aaaagttgat taatcaggtt cgatcaagta
     2881 ttcactccaa caatacctga ttaattcgat ctgtttgaaa atattaaaat tcacctagta
     2941 ccattctgcg tataagttat ctttatttta tttacaggaa tgttcataat cacgtaatct
     3001 aaatattata gaaagaaatc ttgattaata taatggaacc atggataatt ttagtccctt
     3061 acgatggatc caaacagtca gacagagccc ttatgaaagc agtagaactc gcagaattga
     3121 tcaaaaaagg tggaaccaag atctagataa gcatgttaca cgtggtacct gaaatatatg
     3181 tgcctccaac actttttgat agagatgtta ataataagtc gaaagttact ggggaaagac
     3241 ttacctcgca acaatatctc aaagaatatt atcatgaaat ggaatcggaa gcgaagaaga
     3301 cgctagagac aaagaaatcg aaagaggttg aaccagctaa tataatgata agaacttatg
     3361 taacatatgg ttatccctct gacaaaatat tggaattttc aaataaacac caagtaaatc
     3421 tgatagttat cggaagtatt ggattgactg gtttttcgag gatcaaagcc ttgggcagtg
     3481 ttgcacgagg tatctcagaa agagcgaagg gtcctgtgat gatagttcgc tagttcagct
     3541 aattg
//
LOCUS       DASPFX010000286         3765 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1773266, whole genome shotgun sequence.
ACCESSION   DASPFX010000286 DASPFX010000000
VERSION     DASPFX010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1773266"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..887
                     /locus_tag="VD694_06290"
     CDS             <1..887
                     /locus_tag="VD694_06290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12351.1"
                     /translation="NSHKILYTEHFGSAGAQFSIDFGNRTQVIINKLISKSKHVLYVN
                     LVEPLLRFLFISRGYILLHSACLDKNGSGLLMSAPPDTGKTTTVLKCVKNGFSFLSDD
                     MTIIRLPNEALCFPKPMTISSHTFKTAVSVSNTRDTDRSMRIRSLVHSKTGRAFMHKL
                     AKLNVPIFTINTVGQSLVRPPKYGINSILKDANIKNNTKVDNLFFLKREGNEFTKLDT
                     NSALDIAIENSDDAFIFPPYAELLKYIAINGKSAFELLEEEKKLLNSFLSGISCHMVK
                     SETRGWFNMISEFTEKMV"
     gene            1069..2118
                     /locus_tag="VD694_06295"
     CDS             1069..2118
                     /locus_tag="VD694_06295"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HXW12352.1"
                     /translation="MFQNVHEYGQINYVIAIGSLSASFSLLGLNTAVTTLVPHGHKNI
                     DVQANQVILISAIVSAIIASIFNWLLGLFVLGMAFWMMSSYELLSKKLYSKYAINIIG
                     SRGSQLILSIILYSFLGLQGIIIGFIISFFAFSITYFKTIPKFSKSFDEITKEFRTSL
                     HLYSYNLSNALLLYLDKLIIAPIYGYTILGYYQLGFQFLMFFSMISVSFYQYLIPEES
                     SGSKRNRLRMYGIALSVIITILVFVFAPAILQVFFPNYVNSLNSIRILSLGIVPMMIA
                     GTLNSKFLAMKLTRYVLFSSVTYQVTQIILIIILGRLYGIEGISMSVVIAMLFQITFL
                     GIAHLRLSKSNKQKV"
     gene            complement(2218..2832)
                     /locus_tag="VD694_06300"
     CDS             complement(2218..2832)
                     /locus_tag="VD694_06300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12353.1"
                     /translation="MISKSIMIPLAMIVLATLFISIDNGNKYVLADSSNNKVKINTDS
                     EYRIDCDEYKDGTNDAICADEDTTTIDGINIAGENNKVTPNIHVNQVQKCDETDNGDN
                     NALCSNISENFLDAISVSGNNNNVNYDINTKQTNDCDDKLRGNNNVQCENELKTQVNS
                     LSLSGNNDAIDLDVNTRQSNDCDDKTNNDNNLKCTNLQHRIETP"
     gene            complement(3028..3666)
                     /locus_tag="VD694_06305"
     CDS             complement(3028..3666)
                     /locus_tag="VD694_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HXW12354.1"
                     /translation="MSIDELFSFYDDFGYLGILLISFLGSIIVFVPIPYFPVLITAAF
                     NDNLDPTLISLSSAIGAVVAKLVIFYASYYGRNMLSSKIKGKMVPLQRLLGRYGAIGA
                     FIAAVSPIPDDIVYIPLGLAKYNPLKFAIATFLGKFAFNEIFVLGAIYFGKPFVNNML
                     SNSANLDYLLVVTIASIAVLGVIIYFALKIDWAKIIGHWFPWTLDKDPEEKK"
BASE COUNT         1238 a          641 c          599 g         1287 t
ORIGIN      
        1 gtaattcaca caagatactc tacacagaac attttggttc ggccggtgcc caattcagta
       61 ttgattttgg caatagaact caagtaatta tcaacaagtt gatatccaaa tccaaacacg
      121 tgctttatgt taatctggta gaaccgctgc ttcgatttct tttcatttcc agaggataca
      181 tattattaca ttctgcatgc cttgataaaa atggatccgg gttattgatg tctgcaccac
      241 ctgatacggg aaaaactaca acggttttga aatgcgtgaa aaatggattc tcttttcttt
      301 cagatgatat gaccataatt aggctaccta atgaagcctt gtgttttcct aaaccaatga
      361 ctattagctc acatactttt aagactgctg ttagcgtttc caatacgcgt gatacagatc
      421 ggagtatgag aatccgaagc cttgttcatt caaaaactgg tcgtgccttc atgcacaaat
      481 tggcaaagct aaacgttcct atctttacaa taaatactgt aggtcaatct ttagtaagac
      541 ctccaaaata tggtattaat tccattttga aagacgcaaa tattaagaac aataccaaag
      601 tagataactt attttttctt aaaagagaag gaaatgaatt tactaaactc gatactaatt
      661 cggcgcttga tattgctata gagaatagtg atgatgcatt tatattccca ccatatgcag
      721 aacttttgaa atatattgca attaatggaa agagtgcatt tgaattgctg gaagaagaaa
      781 aaaaattatt aaactcattt ctatctggca ttagttgcca tatggttaaa agtgaaacaa
      841 gaggctggtt caacatgatc tcagaattta ctgaaaaaat ggtataggca atgtgagaca
      901 agattgaaaa aattctccat taaattaaat tatacgctaa agaatctgac aaatcggaga
      961 tgaaacaaga tattcaaatc tgttcgtcat catgaaggct taatctatat cactattggt
     1021 aattttgttg gagcaaccct tactggaata ttttggctac tgttagcaat gttccagaat
     1081 gttcatgagt atggacaaat aaattatgta atcgcaattg gctctttatc tgcaagtttt
     1141 tcattattag ggcttaatac agcagtaacg acgctagtac cgcatggtca caaaaatata
     1201 gatgtacagg caaatcaggt aatcctcatt tctgcaattg tttctgccat aatcgcctcg
     1261 atctttaatt ggttactggg attgtttgta ttgggtatgg cattttggat gatgtcctca
     1321 tatgaactct tgagcaaaaa attgtattct aaatacgcaa tcaacataat tggctcaagg
     1381 ggttctcagc taatcttatc tataatactt tatagttttc ttggacttca gggaattatt
     1441 attggtttta tcatttcatt ctttgcattt agcataacat atttcaagac tattccgaaa
     1501 tttagtaaaa gttttgacga aataacaaaa gagttcagaa cgtcgttaca tctgtactcc
     1561 tataatctat caaacgcatt actgttatat cttgacaaac taattattgc acctatctac
     1621 ggatatacga ttctcggtta ctatcaatta ggatttcaat tcctgatgtt tttcagcatg
     1681 atttccgtga gcttctatca gtatttaatt cctgaggaat caagcggaag taaaagaaat
     1741 agactaagaa tgtacggaat agcgctttcc gtaataataa ccatcctagt atttgttttt
     1801 gcacccgcaa tcttacaagt cttctttcca aactatgtta attcacttaa ttcaattaga
     1861 attctaagtc tcgggatcgt tccaatgatg atcgcaggta ctcttaactc aaaattcttg
     1921 gcaatgaaat taacgcgata tgtattattt tcttccgtaa cttaccaggt tacacagatt
     1981 attcttatta tcattcttgg aagactttac ggaatagaag gaatatcaat gtcagtagtt
     2041 atagcaatgc tattccagat tacttttctt ggaattgcac atttgagact ttctaaatca
     2101 aacaaacaaa aagtttgaaa tttgaatatt atgctacttc caaaaaaaag gcgaagatga
     2161 ttattatttt aatacaagaa agtatggtta atggtctctg aaatagtaaa ttaacaatca
     2221 gggagtttca attcggtgtt gtaaattagt acacttcaaa ttgttgtcgt tgttagtttt
     2281 atcatcgcaa tcattgcttt gtcttgtgtt gacatcaaga tcaatcgcat cattatttcc
     2341 acttaaactc aaactattaa cttgagtctt taattcattt tcgcactgga cattattgtt
     2401 tccccttaat ttatcatcgc aatcgtttgt ttgctttgta tttatgtcat aattaacatt
     2461 attgttatta ccggaaacag aaattgcgtc aagaaaattt tcactaatat tagaacataa
     2521 tgcattattg tctccgttgt cagtttcatc acatttctga acctgattaa catgaatgtt
     2581 gggtgttacc ttgttatttt ctcctgcaat attgatacca tctattgttg ttgtatcttc
     2641 atctgcacaa attgcatcat tagtaccatc tttgtattcg tcacagtcaa ttctatattc
     2701 ggaatcggta ttgattttca ctttgttatt agaggaatct gcaagtacgt acttgttacc
     2761 attatctata ctgataaata atgtagctaa aactatcatt gctagtggaa tcataataga
     2821 tttcgaaatc ataatcgata gagttttaat ctatattata aataaaattt ggtagataat
     2881 attctaacaa gattgtgcta tagttttgag gaaatagatt caataatatt tactaataga
     2941 attaactgaa tcttgagata tagaaaagat actaaagaat catagatatt gttaagctct
     3001 tttttgagtt caaaaaattg acgtagttta ctttttctct tctggatctt tgtctaaagt
     3061 ccatggaaac caatgaccga ttatttttgc ccaatctatc ttaagagcaa aataaattat
     3121 tactcccaaa actgctatgc tagcgatagt tactactaag aggtaatcta gattcgctga
     3181 atttgacaac atgttgttaa caaacggctt tccaaagtag atcgctccca agacaaaaat
     3241 ctcattaaat gcaaatttac ctaaaaatgt agctatcgca aatttcaatg gattatattt
     3301 tgcaagtccc agtggaatgt acacaatgtc gtctggaatc ggacttactg cggcaataaa
     3361 tgcgcctatt gcaccatatc ttccgagcaa tctctgaaga ggtaccattt ttcctttgat
     3421 ttttgagctg agcatattgc gaccataata acttgcataa aaaatgacta attttgcaac
     3481 taccgcacct attgcacttg aaagtgaaat gagggtagga tctaaattgt cattgaatgc
     3541 tgcagtgatt aacactggaa aatacgggat tggaacaaaa acaattatgc ttccaagaaa
     3601 actgattaat aatataccta aataaccaaa atcgtcataa aatgaaaata attcatcaat
     3661 actcaaatct tctcagaact tggatctctt gcttaatatg ctctaccaaa atacacttct
     3721 ttggtcactt gttctccgca tccaatgcac gatgaaatgt tattt
//
LOCUS       DASPFX010000287         3449 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1338322, whole genome shotgun sequence.
ACCESSION   DASPFX010000287 DASPFX010000000
VERSION     DASPFX010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1338322"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..913
                     /gene="bluB"
                     /locus_tag="VD694_06310"
     CDS             182..913
                     /gene="bluB"
                     /locus_tag="VD694_06310"
                     /EC_number="1.13.11.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016722 - oxidoreductase activity, acting
                     on metal ions [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0032363 - FMN catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5,6-dimethylbenzimidazole synthase"
                     /protein_id="HXW12355.1"
                     /translation="MTEDLDSFTLTEKEGLYKAVFSRRDVRSHFIDKKIPDDILVKIL
                     NAAHHAPSVGFSQPWDFVLIRNKNTKLKVKESFTKEREKSIPLLDNDLERQDKYVKLK
                     LEGILESDINICVTYNPEKFGPFILGRTSIPETGEYSVCCAIQNLWLAARAEGIGVGW
                     VSILSIEDLHKILDIPNHVKPIAYLCLGYVNKFQVRPDLETSGWLKRAILSEVIHFEN
                     WNNTEVNNWNDTNMIIQGLDDVPEE"
     gene            complement(956..2185)
                     /locus_tag="VD694_06315"
     CDS             complement(956..2185)
                     /locus_tag="VD694_06315"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HXW12356.1"
                     /translation="MTLRDDAINLHRMLKGKIEIRSRVSLDNAAEERGTLGLIYTPGV
                     AYVALEISKNKKYAYDYTSKWNNVAIICDGTRVLGLGDIGPEGALPIMEGKSVLFKLL
                     GDINAIPLCIDTQDKEEIIRFAKLIQPNFGAINIEDIESPKVLEIVERLTKEVSIPVF
                     HDDQHGTAIITLAALINALKLVKKELHKVRVIISGSGSAGYGIFKILQSAGCKDIIVT
                     DSKGAIFDGRVDIDNQNPYKKEISINTNFSKLKGTLIEVIRKSDVFIGVSGKAGILNK
                     QMIESMNKDAIVFALSNPDPEIIPNHALDYGATIVATGRSDFPNQINNAVVFPSVFRA
                     LLDLRASNLSESMLVSVAHAIAGIVEDIHLRNDYIIPKVDDPRILSIVTKTIKKVLGR
                     HIKKNIRSKTDTEKQFL"
     gene            complement(2657..3442)
                     /locus_tag="VD694_06320"
     CDS             complement(2657..3442)
                     /locus_tag="VD694_06320"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HXW12357.1"
                     /translation="MTNETLEGEHKRFLEEMNAIEVRNMTNEKTIAILVLGACENHGD
                     HMPFGSDFIFPTEIAKRVATKVSNVIVLPAIQYGVSLHHDKFQMTMSLNPETMVGIIS
                     DVLSSLDQNKISRVLIVNGHDGNIGPIEIAARIMKNKNPEMIIACLESWWVLVGQLRK
                     DLFEVWNGLGHGGEAETSAVLAVRPDLVKIESAPKDTIPNLPENIRIFWKFDELTSTG
                     ATGSPQKATIEKGNEILRLLEDVLISFIKEMDSTDWKYGIYLK"
BASE COUNT         1079 a          646 c          593 g         1131 t
ORIGIN      
        1 taggaaaatt taagcagcta atattaggaa gtgtgtcaag caaaattgta catcattctc
       61 catgcgcagt attattgata aggtaatgat gacaatttta tgatcaagtt tccatgtcat
      121 atgcgacatg atattggtgc aattacaact agtcgtataa tcataaatga attgacagaa
      181 aatgactgag gatcttgatt cttttacatt gactgagaaa gagggtctat acaaggctgt
      241 tttttcaaga agagacgtca gatctcattt tattgacaag aaaattccag atgatattct
      301 cgtcaagata ttgaatgcag ctcatcacgc tccatcagtc ggtttctccc agccttggga
      361 ttttgtttta ataagaaaca agaacacaaa actaaaagtt aaagaatcct ttacaaaaga
      421 acgagaaaaa tctattccat tgcttgataa cgatttagaa agacaagata aatatgttaa
      481 gctaaaatta gagggaattt tagaatctga tatcaatatt tgtgtgacgt acaatcctga
      541 aaaatttggc ccatttattt tagggagaac atcaataccg gaaacaggtg aatacagtgt
      601 ttgttgtgct atacagaact tgtggttagc agcaagggct gaaggtattg gagtaggttg
      661 ggtaagtatt ctctcaattg aagatttaca taaaatatta gatataccta atcatgttaa
      721 accgatagcg tatctctgct taggatatgt aaacaaattt caagttagac cagatttgga
      781 aacatcaggt tggttgaaaa gagcaatcct ttctgaggta attcattttg aaaattggaa
      841 caataccgaa gtaaataatt ggaacgatac aaacatgatc atacaaggat tggatgatgt
      901 tccagaagag taaatctcta gattggacat ttcatcatcc atttagattt gcggcttata
      961 aaaactgctt ttctgtatct gtcttagaac gaatgttttt tttgatatgt ctgcctagta
     1021 ccttctttat ggtttttgta acaatggaaa gtattctggg gtcatcgact tttggaatta
     1081 tgtaatcatt tctaaggtga atatcttcaa ctatacccgc aatagcatgt gccacggata
     1141 caagcataga ctcactcaag ttactagctc gaagatccag taatgccctg aataccgacg
     1201 gaaatactac cgcattgtta atttgattag ggaaatcgga cctacctgtt gcaacaatgg
     1261 tagcgccata atctaaggca tgattaggaa ttatttccgg gtccggatta ctcaaggcaa
     1321 atactattgc atccttattc atcgattcta tcatctgctt attcaaaata cccgcttttc
     1381 cagaaacccc gataaataca tctgatttcc tgattacttc tattagagtt cctttgagtt
     1441 tactgaaatt cgtgttaatg gatatctctt ttttgtatgg attctgattg tcaatgtcta
     1501 ctcttccatc aaatattgcc cccttggaat cagtgacaat gatgtccttg caacctgccg
     1561 attgtaagat cttaaatatt ccatatcctg ctgatcctga gcctgatata atgacacgaa
     1621 ctttgtgaag ttcttttttt actaacttga gcgcatttat cagagctgca agagtaatta
     1681 tggcagtacc gtgttgatca tcatggaaaa caggtatcga tacttccttg gtcagtcttt
     1741 caacgatttc taaaaccttc ggtgattcga tgtcctcaat gtttattgca ccaaaattgg
     1801 gttgtatcag tttagcaaat ctaattattt cttctttgtc ctgagtgtca atgcacaaag
     1861 ggattgcatt aatatctcct aacaacttga ataagacaga ctttccctcc attattggca
     1921 aggcgccttc tggaccaatg tcgcccaaac ctagaaccct tgtcccgtca cagattattg
     1981 ctacattatt ccactttgat gtataatcat aagcatattt tttgttctta cttatttcta
     2041 aggcaacata tgctacacca ggagtataaa tcagccctaa tgtcccgcgt tcttcagctg
     2101 cattgtccaa tgaaactcta ctccgaattt cgattttacc cttcaacatc ctatgtagat
     2161 taatcgcgtc atcgcgtaat gtcaactata tacaattatg aattagatca tattttattc
     2221 tgctcatagt aattgaaata tctatttgtt ctccttaagg ttcttgatag aggggatcaa
     2281 aattactccc tccccctctc tttcaagtca tatatatctt ataaatcata attctgtaga
     2341 ttcaaacatg tctactcata aagccatgag aaacaaacgg acgagtaaaa cagtagcatt
     2401 agaatcgcaa taccttgtgc aaattggaaa tcagcatgag ggggaaaaaa aagtcagcga
     2461 cacaatagaa catgaaatag gatgtccaag atgttataat gtcatgactt tatgctctga
     2521 ttttgacagc ctctattatc tatgtgaaga atgcgatttc tctttatata cgctaaagta
     2581 attattcgat tcaataggcg acaaggaatg tattgaagat aatattgatg taatctggcg
     2641 aattggaaga aaactattat ttcaaatata taccgtattt ccaatccgtt gaatccattt
     2701 cttttatgaa ggaaatcaac acatcttcta gcaagcgtaa aatttcatta cccttttcaa
     2761 tagttgcctt ttgaggagaa ccggttgccc cagtagaagt taattcgtca aatttccaaa
     2821 atattctgat gttttcaggc aaatttggaa tggtgtcctt tggagcagat tctattttta
     2881 ctagatcagg gcgcacagca agaacagcgg atgtttctgc ctcacctccg tgtcctagtc
     2941 cattccaaac ttcaaataga tctttcctta gctgcccaac caaaacccac caagattcca
     3001 aacatgcaat aatcatctca gggtttttgt ttttcataat tcttgctgca atttcaatgg
     3061 ggccaatatt cccatcatgt ccatttacta tcagaactcg acttatcttg ttctgatcaa
     3121 gactggaaag tacatcagaa attattccta ccatggtttc aggattaaga ctcattgtca
     3181 tttgaaattt gtcgtgatgc aaactgactc catattgaat tgcaggaaga acaatgacat
     3241 tactaacttt agtggcaact ctttttgcaa tttcggttgg aaaaataaaa tctgatccaa
     3301 atggcatatg atctccatgg ttttcacaag caccaagtac caggattgca attgttttct
     3361 catttgtcat attacgaact tcaatggcat tcatttcttc tagaaatcgt ttatgttcac
     3421 cttccaaagt ttcatttgtc atagactac
//
LOCUS       DASPFX010000288         2122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2059404, whole genome shotgun sequence.
ACCESSION   DASPFX010000288 DASPFX010000000
VERSION     DASPFX010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2059404"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..515)
                     /locus_tag="VD694_06325"
     CDS             complement(<1..515)
                     /locus_tag="VD694_06325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12358.1"
                     /translation="MTRSKTQFYIGLSVAMLTFVGVNLFENIVDPVFAQTDNTNFAST
                     SNNINNTTIATDQQQDTSSLHPQVVLIMEEEGKITNQRVLEVHPYPVIESTFVANQTI
                     FGDIQAHNLGTYWATIYPNGSLHGEGHGISTTTEGEMVTWTAEGVGNANPDGDVRFEG
                     SLFFNTSSEGE"
     gene            complement(953..1198)
                     /locus_tag="VD694_06330"
     CDS             complement(953..1198)
                     /locus_tag="VD694_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12359.1"
                     /translation="MLDIDDLGSVVPIKDLDFNILPHDDSIIDLLKTSNHVIIVTEDV
                     HNNATIISAINLTDEELNNEKERMIKAANKDRNSKTS"
     gene            complement(1442..>2122)
                     /locus_tag="VD694_06335"
     CDS             complement(1442..>2122)
                     /locus_tag="VD694_06335"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HXW12360.1"
                     /translation="KDHKVIIFDNRGVGNTTSGIKPFSIKQFANDTAGFLSALKLQQA
                     DVLGFSMGSFIAQQFALTYPDKVNHLILYGASCGGQESTPQSPQVVIALSNFVNNHTE
                     DETSFLEVTFPIKWIRENPNFLDTIPKTSEIILFTTLKKHFEINENWLSTNWTGVCDQ
                     LQKMTKPTLIITGTKDQAVPAANSLLLADKIPGAWLVQIKDAGHGLMYQYPEIFTRVV
                     ETFLNVTN"
BASE COUNT          644 a          363 c          342 g          773 t
ORIGIN      
        1 aactctcctt cagatgatgt attaaaaaat aatgaacctt caaacctaac atcgccatct
       61 gggttcgcat tgcctactcc ttctgctgtc caagttacca tttctccttc tgttgtagta
      121 gatattccgt gtccttctcc atgtaaagaa ccattagggt agattgttgc ccaatacgtg
      181 ccaaggttat gtgcttgtat atctccaaat atagtctggt ttgcaacaaa cgttgactca
      241 attactggat aaggatgaac ttcaagaact ctttgatttg tgattttacc ttcctcttcc
      301 attattagta ctacctgagg atgaagactc gatgtgtctt gctgttgatc cgttgctatg
      361 gttgtgttat taatattgtt ggaggtagaa gcaaagttag tattatctgt ctgagcaaat
      421 actggatcca caatattctc aaatagatta accccaacaa atgtcaacat agctacactt
      481 aagccaatat agaattgtgt ctttgatcga gtcattttac atgtttttaa taaattgcat
      541 ttcattgcag attaatcgca tttcttgtat ttaagttgta actaagctta ttggtttaat
      601 tgtaaaaaat ggaatttgat cacattatac ggtctttttt gtaggcttaa tttctcgtat
      661 tttaagcaga tatttgaatt atctggatct tgcactagcg actatggatt acaattcaag
      721 acctttgtaa aattattgtg taatgatttg aataatatca tttacgtcta gtttaagaat
      781 acattgtatc ggtagttcta tctcactata gttataatca tggttgaaac aacaatagga
      841 agcagcaatt ggttacctca agaagaatga gatagtgtat taagacaaaa tacctctgac
      901 tactgttata ttatctcagt tagagtttta aactaaagtg ttttatgatt ccttaactgg
      961 ttttgctatt tctatcctta ttggctgctt ttatcattct ctctttttca ttgttaagct
     1021 cttcatcggt caaattaatc gcagaaatta tagtagcatt attatggaca tcttccgtta
     1081 caattatcac atgattagaa gttttcaata aatcaataat tgaatcgtca tggggcaaga
     1141 tattgaaatc caggtccttt ataggaacca ctgatcctag gtcatctata tcaagcaaag
     1201 tcacattcac tttattctct gcttcataaa tgtgatttac tttaactagc atgattataa
     1261 tatgacataa ttactaatac cctttacgtt tacttaatag cacctaagca gataatttca
     1321 agaatacata tgactcgagg gtaaattttc ttaacacatg gtttgtattg ataaagctat
     1381 tcgtaagcat cttttataga tatatacgta attacaattt tgaggtaatc tcgttaatct
     1441 tttaatttgt cacattcaag aatgtttcaa caactctagt aaagatttca ggatattgat
     1501 acatcaagcc atgtcctgca tctttaatct gtacaagcca agctccagga attttatctg
     1561 ctaaaagtaa agagttcgca gccggaacag cttgatcttt agtacccgtt attattaaag
     1621 ttggtttagt cattttttgg agctgatcac atacaccagt ccagttcgtt gaaagccagt
     1681 tttcatttat ctcaaaatgt ttctttaagg tagtaaaaag tataatctca gatgttttag
     1741 gtatagtatc taaaaagttt ggattttctc taatccattt aattggaaat gtcacctcta
     1801 gaaatgaagt ttcatcctct gtatgattat tgacaaaatt tgatagtgct attacaactt
     1861 gggggctttg aggagtactt tcttgtcctc cacatgaagc gccatataat atgaggtggt
     1921 ttactttatc tggatatgtt agcgcaaact gttgcgcaat aaaagaaccc attgagaaac
     1981 ctaatacatc agcttgttgt aatttcaaag cactcaaaaa tcccgcagtg tcgttagcaa
     2041 attgtttaat ggaaaacggt tttattcccg atgtcgtatt tcctactcct ctgttatcaa
     2101 agataatcac tttatgatct tt
//
LOCUS       DASPFX010000289         3223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2059980, whole genome shotgun sequence.
ACCESSION   DASPFX010000289 DASPFX010000000
VERSION     DASPFX010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2059980"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VD694_06340"
     CDS             <1..458
                     /locus_tag="VD694_06340"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HXW12361.1"
                     /translation="GILLTDLILGKSNPWTALYDPSRKPRKVPSTKSEEGGEAQSQEA
                     GKPTDQDEQENDKKSSSKSEEKMASLKNLKERQGIVLGEEKIAAYKDHKGQLHTYSAV
                     CTHLGCTITWNNSEKSFDCPCHGSRFSSSGTVINGPVNTALENKQVHNS"
     gene            636..1943
                     /locus_tag="VD694_06345"
     CDS             636..1943
                     /locus_tag="VD694_06345"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HXW12362.1"
                     /translation="MRSNKKTSIPIKLGLRANKNQFSILVLVNAFVGAMIGLEQTVVP
                     LIGKDEFGIESNALIVSFIASFGAIKAILNLFAGSMSDRWGRKRMLVLGWLFGIPVPF
                     ILLFAPDWNWIIFANVLLGINQGLAWSMTVNMKIDLVGKERRGLALGLNEFAGYVSVA
                     VVGFVTGYIAAIYGLKPYPFFLGIVFALLGFIISWLIVKDTRNFTLLEIKENQEEFAK
                     TSDNQLDSHKKATANERFGNLTFIQVFIETSWKNRSLLSVSQAGLINNLIFGVSWGLF
                     TLYFASLNISINDIGFLKALHPGVWGVLQLVTGSLSDKVGRKILIYPGMIVQGIGIWV
                     VLLSVNSFIGNIVGMSLLGIGTALVYPTLLAAISDTAHPKWRATSLGVYRFWRDLGFV
                     FGAIGVGFIADLSTNSIAIQLVAWIAVASGIFVLLVMKETRKV"
     gene            complement(2645..3031)
                     /locus_tag="VD694_06350"
     CDS             complement(2645..3031)
                     /locus_tag="VD694_06350"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12363.1"
                     /translation="MGKQRIRILIADENKDVNILLAATLVLKGYEVYKTYSADECISK
                     LEEYEGKVNVLLLNGAIAADRGAMVIVKAKRINPDIKILAVADDESEKTRVLDYGADG
                     FTTKPISAETIVNKISALLIVGKSIG"
BASE COUNT         1002 a          529 c          619 g         1073 t
ORIGIN      
        1 ctggaattct tctaacagat ctgattctag gaaagagtaa cccgtggact gctttatatg
       61 atccttcaag aaagcctaga aaagtgccta gtacaaaatc tgaagaagga ggagaggcac
      121 aatcccagga agcaggaaaa ccaactgatc aagatgagca ggagaatgac aaaaagtcat
      181 cttctaaaag tgaagagaag atggcatctc ttaaaaattt aaaggaaaga caaggtatag
      241 ttttaggaga ggaaaaaata gccgcataca aagatcataa gggacaacta cacacatatt
      301 ctgcggtatg cactcacttg ggttgtacta taacttggaa taattcagaa aaatcatttg
      361 actgtccatg tcatggttca cgcttttctt catcaggaac agtaattaat ggacctgtta
      421 atactgcatt agaaaacaag caagtacata attcataact atgtttcaga tcaaatgtgc
      481 tgattgtgga tgctatccaa aggattgtaa agatagcaat tctcctcgag tatgtctaaa
      541 tcgctcatag aaagaatgtc gttgctgctg gacttatcta tcgattatga gggtcggttt
      601 ccccaaatta atctaaattt gaagaatagg gtaatatgag gagtaacaag aagacttcca
      661 ttcccataaa attaggccta agagcaaata aaaatcaatt ttctattctt gttctagtta
      721 atgcatttgt aggtgctatg attggtcttg agcaaactgt agttccactc attggtaaag
      781 atgaatttgg aatagagtcc aatgcattga ttgtatcatt tatcgctagt tttggtgcaa
      841 tcaaggccat tttgaatctt tttgcaggta gtatgtctga tagatgggga agaaagagga
      901 tgctagtgtt ggggtggcta tttggcatac cagttccatt tatcttgcta tttgcgcctg
      961 actggaattg gattattttt gccaacgtgt tgcttggaat aaatcaaggt ctagcctggt
     1021 caatgactgt gaatatgaaa attgatttgg taggcaagga aagaagagga ctggctttag
     1081 gattaaatga atttgcagga tatgtctctg ttgcagtagt gggatttgtt actggatata
     1141 ttgcggcaat atatggattg aaaccctacc cattctttct tggtattgta tttgctttac
     1201 ttggtttcat aatctcttgg cttattgtta aggatacaag aaattttact ctactagaga
     1261 taaaggagaa tcaagaggag tttgcaaaaa caagtgataa tcaacttgat agtcacaaga
     1321 aggctactgc caatgaaagg tttggaaacc ttacttttat tcaggttttc attgaaactt
     1381 cttggaaaaa cagatctctt ctctcagtta gtcaggctgg tcttattaac aatttaatat
     1441 ttggtgtttc ttgggggtta tttactctgt attttgcttc tctgaatata agtataaatg
     1501 acattggatt cttaaaggca ttgcatccag gtgtatgggg tgtcctacaa cttgttaccg
     1561 gctctctgag cgacaaagta ggaagaaaaa tactgattta ccctggtatg attgttcagg
     1621 gtataggaat ttgggtagta ttattatcag taaattcatt tatcggtaat attgttggca
     1681 tgtcacttct tggtataggc actgcacttg tctatcctac tttacttgca gcgattagcg
     1741 atacagcaca tccaaaatgg agggctactt cacttggggt atatagattt tggagagatt
     1801 tgggatttgt atttggcgct ataggtgtag gatttattgc agacttatca accaacagta
     1861 ttgcaattca gttagtggcg tggattgccg tagcatcagg tattttcgtt ctattggtaa
     1921 tgaaggaaac aagaaaagta tgacctcaaa ataatattta acaccacgat taacatgaat
     1981 acataattgg tttattaata tgaccgattt agtctatcga tatgtcaaca aaaccttaat
     2041 gtgtgtttaa atcttgtatt ccattattgt tatacatccg ttacaatact ttaattgtta
     2101 aaaatgaatt ttcctgcagg caaaggggct attatcagcc agttccgtgt ttggcctttc
     2161 ccctccacct taataatggc ctttggtgaa cggaacagaa acccaggtca tcattttgca
     2221 ggtatgtgtt tgtattatct ttttttattt aaaacgatgt acaataaaat cagacgcaaa
     2281 aaggataatt gtaagataga aggttcagtt ctcgcgatat tgaaagtcga agttaatggt
     2341 gaaaaagata tgttttgcta atgttaatga tatattatta agaaacaaaa agagaatagc
     2401 tagtataatg taacagatgc acctcgctaa ttagttgagc attaacacgt tgagcattaa
     2461 cacgtagtta gggaatatgg tttgctaaca cagggacata tcacagggga actggttcag
     2521 cctcagcata ttatatattg tattctgaaa ttagaaatgg caaaagtccc taccagatat
     2581 taagcttgat ttcaaaccta tatctgaaaa atttgacaag aacgatcgac tgttcagctt
     2641 actattatcc aatacttttt cctactatta ataatgctga aatcttgttt actatggtct
     2701 ctgcactgat aggtttagtg gtaaagccat cagctccata atccaagact cttgtctttt
     2761 cactttcatc atctgctact gccaagatct tgatatcagg gttaattcgt ttagccttaa
     2821 caataaccat tgctcctctg tctgcagcta ttgcaccatt tagaagtaaa acatttactt
     2881 ttccctcata ttcctctaac ttgcttatac attcatcagc actataagtt ttatagactt
     2941 catatccctt gaggacaagc gttgcagcta atagtatatt tacatcctta ttttcatctg
     3001 caatcaatat tctaatcctt tgtttaccca aatctagtat cagtatcgtc ttactttatg
     3061 taaatttatc tataatgatt ttgcctcttt actcttatta ttattattta gaatgacaaa
     3121 tctatgagtt agccattttt ggaatagtaa acgaaaacat agcacctatt ccatcattat
     3181 tattttgtgc ctgtattttg ccgccatggg cctcaactat att
//
LOCUS       DASPFX010000290         2518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1774195, whole genome shotgun sequence.
ACCESSION   DASPFX010000290 DASPFX010000000
VERSION     DASPFX010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2518
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1774195"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..645)
                     /locus_tag="VD694_06355"
     CDS             complement(<1..645)
                     /locus_tag="VD694_06355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12364.1"
                     /translation="MKDKKNVFYFSSVIVATTVMFMNFDVDATESNQSAVVSNLNLSN
                     TAAADAIDMAVRGIATNNIDRLMSETILPVLANSSSSNIVANKNNHTTGGAAVAGESR
                     SINNTGDISNGQSIKGMQIQNDPLAANIGSRNSTNSPAVIMMDPEQRSSERGDTRAIA
                     DNGTILLQFQNPMDADIVNRLERIETIIQNYTMRNEINMASKSIEESNNQIKSEL"
     gene            complement(1282..1482)
                     /locus_tag="VD694_06360"
     CDS             complement(1282..1482)
                     /locus_tag="VD694_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12365.1"
                     /translation="MTDTAYDILKVLGKDADFLYDTIETYIKDAQRANKPQLVEIWTT
                     IKNDRKRHMHLLKEALEREIHG"
     gene            complement(1572..1841)
                     /locus_tag="VD694_06365"
     CDS             complement(1572..1841)
                     /locus_tag="VD694_06365"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HXW12366.1"
                     /translation="MVTTQAYCVKCKSKRDMKNEKQVTMKNGRQAISGTCSVCGTKMF
                     RIGGSSSSKSASVAVAKQRPKVKAASRKPTSKAANTRKSKTKGKR"
     gene            complement(2143..>2518)
                     /locus_tag="VD694_06370"
     CDS             complement(2143..>2518)
                     /locus_tag="VD694_06370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12367.1"
                     /translation="EVTSSPESKIITFRLIPIAPATGAFLSINATKSESGMDFDELIE
                     TMSDALNPETGVHTLESGSASISGIPVYKIVQRYENSPYGRDATAVFIGAVRDKTSYI
                     LSSLSADENVLRQMINSLEFTK"
BASE COUNT          672 a          519 c          452 g          875 t
ORIGIN      
        1 taattcactt ttaatttggt tgttagattc ctcaatggat ttggatgcca tatttatttc
       61 atttctcatt gtatagtttt gaatgattgt ttcaatcctt tctaatctat tcacaatatc
      121 agcatccatt gggttttgaa actgcaaaag gatagttcca ttatcggcta tggcccgtgt
      181 atcacccctt tcgctagatc gttgttctgg atccatcatt attactgcag gactattagt
      241 gctattccta cttcctatat tcgcagcaag aggatcgttt tgtatttgca ttcctttgat
      301 gctttgacca tttgaaatat ctccggtgtt gttgatagaa cgtgactcgc ctgctactgc
      361 tgcgcctcct gtagtgtgat tattcttatt tgccactata ttagaggatg aagaattggc
      421 caggaccgga agaatggttt cactcataag acggtctata ttgtttgtcg ctatgcccct
      481 gacggccata tcaatggcat ctgcggcagc tgtattactt agatttaaat tggatacaac
      541 agcagactga ttactttccg tcgcatcgac atcgaaattc ataaacatga ctgtggttgc
      601 tacaataacg gaagagaaat aaaagacatt tttcttgtct ttcacgggtt ttattcactt
      661 tctgtgttct attaagccac ttacttcata atgtgaatgg catgggataa taaaagttga
      721 cttcaatgac gctacatcaa gtggtttgac tttgagatag ttgttacttt tgctctagac
      781 aaatgccgag aagttggatt tacacgaagc tttcccatgg ccgcaaaatt ttagaacatt
      841 gaatcccaca ctaggcatct tgcgaatatt ttcctcttct atggttaagg gagtatcctg
      901 aacatagacc ccatcatgat gtctcgttgt ggggtattgt aatctggcgt cgcgttaacg
      961 aataggtttg ttctcgctaa aagttgaatg gcgttgtgtc aacaaaaatt cagccctatg
     1021 actaaaatgg tccaaccaac actgtattag gttatccctc ttccatactc gccaaaaatc
     1081 ttcttgcctg taatttggct cttttggacg tttatttgtc aaatgattct ttctgcaaat
     1141 ttgcgccccc tggacgttat cattccttat actcctaacc tttagccagt caaattttct
     1201 gaaaaataaa aaaatgaact gctaaaaaga cagcaaataa taaaaaggct gttatgttac
     1261 tgcaaatgct cttgagaata tttatccgtg aatctctctt tccaatgctt ctttaagcaa
     1321 atgcatatgt ctttttctgt catttttaat tgtcgtccat atttccacta gctgtggttt
     1381 attggctctt tgtgcgtctt taatatatgt ctcaattgta tcatataaaa agtctgcatc
     1441 tttgcccaaa acttttaaaa tgtcatatgc tgtgtctgtc aattcagttg aagttgagga
     1501 ggaggatgcc atattctata gttgacccat aatatattta acaggtatac cagttggttt
     1561 tacttttagt ttcacctttt gcctttggtc ttggactttc ttgtattggc ggctttactt
     1621 gttggttttc tgcttgctgc ctttaccttt ggacgttgtt tagccacagc aacactggca
     1681 ctcttactac tactactacc acctatcctg aacatcttcg taccacagac tgagcatgtt
     1741 ccagatatag cttgccttcc gtttttcatt gttacctgct tctcgttctt catatctctt
     1801 ttagatttac attttacaca atatgcttgt gttgttacca ataggaggta aatctcgtgc
     1861 ttggatataa aagtagctat ttcttatagt atgaattaga acagtcgatg tcaaactcag
     1921 ccttatttct gcagttttgt aggtccgagg atctatatcc ctgcgactag atcatagaaa
     1981 tctcaattgt gccaactaaa aatgacctaa ttaacttact cctgagacga aattaaaggt
     2041 ggtaagataa gctgaccaaa ctcaagattt ctccaagtca tgaatttcca taatttgatt
     2101 actaaactgt agctcttcag tcggccctca gaccaagaga gcctattttg taaattctaa
     2161 agaatttatc atttgccgta gtacgttctc atcagctgac aatgaactca gaatataact
     2221 cgtcttatcc cgtacagcgc caatgaatac agctgttgcg tctctaccat aagggctatt
     2281 ctcatacctc tgaactattt tgtacactgg aattcccgaa atgctagctg atccgctttc
     2341 cagagtgtga acccccgttt ctgggttaag agcgtctgac atcgtctcta taagttcatc
     2401 aaaatccatt ccagactccg atttagtagc atttattgat agaaaagccc ctgttgcagg
     2461 agcaatagga atcaacctaa aagtgatgat tttggactca ggagaactgg tgacctca
//
LOCUS       DASPFX010000291         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1532034, whole genome shotgun sequence.
ACCESSION   DASPFX010000291 DASPFX010000000
VERSION     DASPFX010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1532034"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..620)
                     /locus_tag="VD694_06375"
     CDS             complement(228..620)
                     /locus_tag="VD694_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12368.1"
                     /translation="MGLPQQEQKRILVVDDEADLTLLCALALEYNGFKVDTFTDPRKA
                     LSNYKPGYYDLIILDIMMPNMDGFELYDEIKQKDQKAKVCFLTASELYYKEFREKEYN
                     AIDKALFIQKPIQNEELLKEVNRRISSD"
     gene            complement(965..>2253)
                     /locus_tag="VD694_06380"
     CDS             complement(965..>2253)
                     /locus_tag="VD694_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HXW12369.1"
                     /translation="YKHRVQVCRDAAAKIADRKFELAAWISYENGKNRYEAIADVDEA
                     IDFIKYYSEEMEKNSGFTVETAKAESNERSKSVMKPYGVWGVIAPFNFPAAILIGMSI
                     GALISGNTVVLKPASNTPIIGYLFAQIMKEAGLPAGVLNFVTGSGDIIGRAIVENQDV
                     AGIVFTGSKEVGLKMSREYGSKLNPRPIIAEMGGKNPVVVTDSADIDKAVDGVLKAAF
                     GYSAQKCSACSRLYIHRNIKEAFMMRLVYETKNLHVDNPLKRDSFIGPLVNSSAYNKY
                     KKFSKIAYRDGNVLVGGTVRNNGDYKYGYYVEPTIVDGLPKNHRLFKEELFVPILCVT
                     EYDNYKEILQQCNDSEYGLTAGIYSNRKYEIERFLDTIEAGVIYVNRYRSATTGAMVG
                     CQSFGGWKASGTTGKGTGGPYYLMQFLREQSQTIAE"
BASE COUNT          614 a          506 c          384 g          749 t
ORIGIN      
        1 cacaaaacat ctgtggagtt ataaaatagc attcgcatct tctacagtat ttcttgccaa
       61 ccgaataatg cgattggcct acaatcattt tagaatatct cagacataag tttcgacaaa
      121 ccaatgggga atcgagcttg ctcagctatc tcagcagaat ataagcaatg aatatcgcca
      181 tggagagggg gagactaaga cggctttcgg cgatattagt aggactatca atccgaactg
      241 attctcctat ttacttcttt tagcaactct tcattttgga tcggtttttg gataaatagg
      301 gctttgtcta tcgcgttata ttctttctct ctaaattcct tataatacaa ttcacttgcg
      361 gtaaggaaac agactttggc cttctggtct ttctgtttta tttcatcata taactcaaac
      421 ccatccatat ttggcatcat tatatctaga ataattaaat catagtaacc gggcttgtag
      481 tttgataacg cctttcgtgg atctgtaaac gtgtctacct taaatccatt atattccaat
      541 gcaagggcac agagcaatgt aagatcggct tcatcatcta ctaccagaat cctcttttgt
      601 tcctgttgtg ggagacccat ttgtcgaccc tatcttcctt agtataagta agttatagaa
      661 tggccgaagg aaacaagtta ttataaattg tgttagaaaa ctttagaagc ctttgagcgt
      721 attatatatc agccgcagga gtccccccga agcaactctg gtatcatcat gccgtgttgt
      781 ttcgctctcc tgcggcttta ttctaaaggc tgtatccata cctaattatt aacagttatt
      841 atttcaccat ttacgagagt agagaagaag atttatacca ggaagaatat ggccagttaa
      901 ctctatcgta taatctaaca aggcaagaca ggattggtta ggtaatctgt tattctgtca
      961 tatattactc agcaatagtc tgactttgct cccgcaaaaa ttgcattagg taatacggtc
     1021 ctccggtccc tttgccggta gtgccagagg ctttccatcc gccaaatgat tgacacccaa
     1081 ccatagcccc ggttgtagca cttctgtatc tattgacata aattactcca gcctcgatgg
     1141 tatctagaaa tctttcaatc tcatattttc tattgctata aatcccagct gtcaatccat
     1201 attctgaatc gttacactgc tggagtatct ctttgtagtt gtcatactct gttacacata
     1261 ggatggggac aaataattcc tctttgaata aacgatggtt ttttggtaac ccatcaacaa
     1321 tagtgggttc tacatagtag ccgtatttat aatcgccatt gtttctgact gtaccgccta
     1381 ccagcacatt tccgtctctg tatgcaattt tggaaaattt cttgtactta ttgtaggcgc
     1441 tagagttaac aagtgggcct ataaagctat cccgtttaag cgggttgtca acatgtaaat
     1501 ttttagtctc atatactagt ctcatcatga atgcctcttt gatgttccta tgtatatata
     1561 gccgggaaca tgcactgcat ttttgtgctg aataaccaaa cgctgctttc agaacaccat
     1621 caacggcttt atcaatatct gcactgtcag tgacaaccac tggatttttt ccacccattt
     1681 ccgcaataat tggacgcgga tttagtttgc ttccatattc tctgctcatt tttaacccca
     1741 cttccttcga gcccgtgaat actatacctg ccacatcttg gttttcaact attgctctcc
     1801 ctatgatatc tccagaacca gttacgaaat tcagtactcc agcgggtaga cctgcctcct
     1861 tcataatttg tgcaaataga tagcctataa tcggcgtatt gcttgctggt ttcagaacta
     1921 ccgtatttcc cgagatcaag gctccaatac tcattcctat caatattgca gcaggaaaat
     1981 taaaaggggc aattacaccc cacacgccat aaggtttcat aacactctta cttctttcat
     2041 ttgattctgc ttttgctgtt tcaacagtaa atccactatt tttttccatc tcttcagaat
     2101 agtatttgat aaaatctatt gcttcatcca catctgcaat tgcctcgtat ctgttcttgc
     2161 cgttttcata agaaatccat gctgccaatt caaacttcct gtcagcaatt ttggctgcag
     2221 cgtccctaca gacttgtact cgatgtttat aat
//
LOCUS       DASPFX010000292         2095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_350131, whole genome shotgun sequence.
ACCESSION   DASPFX010000292 DASPFX010000000
VERSION     DASPFX010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350131"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1117)
                     /locus_tag="VD694_06385"
     CDS             complement(<1..1117)
                     /locus_tag="VD694_06385"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HXW12370.1"
                     /translation="MLQVPVRFSLRPTQFSVAAWFKTSSNFGSDAFIVNKGGIGSDSS
                     GQNLNYGIWMTSTEKIKAGFETSSGSDQYVTSLNSYNNNQWHYAVVTNDGSNLRLFID
                     GAQVATKSTSSATPETSGTKPVRVGANSRVTPPGNFFTGEIDEVRVWNDDLTTQQVTD
                     AFSGSSFNTGEQVLYLPFASSGTDNDIFGIKKLYQTKNSGEEWYINMNNPTSDSRFNP
                     QNTITKNPDGSWKMKATQVRMNVYTSTGYDGDDIPTLDHSEIATKGYMLRPNDWKNFE
                     MTQYVKVNTSPSDDGFSPYGRGGRHTGGGAPEGCEGSSMKGDVFFSGKVRFAKEQWHV
                     SYVFTSLKTLSTGSIEDKWTGIKFIVYNFVQNNKVVVK"
     gene            complement(1331..1582)
                     /locus_tag="VD694_06390"
     CDS             complement(1331..1582)
                     /locus_tag="VD694_06390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12371.1"
                     /translation="MISRLFSNSDMGVIYEIHKYQQEEFQYVVASTNKYPETKVKNDV
                     ERMNSMLNESVRTMGIKYVFVVSDTSDSVYKERKKKNSY"
     gene            complement(1687..>2095)
                     /locus_tag="VD694_06395"
     CDS             complement(1687..>2095)
                     /locus_tag="VD694_06395"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YgjP-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HXW12372.1"
                     /translation="YWILSENLLKISFHVKDRRREKENIINWYRSQTKKILDTKVPLF
                     GKRLSITYGKVRIKNQKLRWGSCSKDGNLNFNLLLSALPSHIMDYIIIHELIHLIEFN
                     HSDRFWQLVEEAIPTYKDCRDWLKKNGPYIQLN"
BASE COUNT          610 a          417 c          342 g          726 t
ORIGIN      
        1 ttttcacaac taccttgtta ttttgcacga aattatatac aatgaatttt attccagtcc
       61 atttgtcttc aattgatcca gttgaaagag ttttgagact agtaaataca tagctcacat
      121 gccactgctc ctttgcgaac cttacttttc ctgagaagaa gacatctcct ttcatggaag
      181 agccttcaca tccttctggt gcacctccac cagtatgtct gccccctcta ccatatggtg
      241 aaaaaccgtc gtcactagga gatgtattta ctttaacgta ttgagtcatc tcaaaatttt
      301 tccagtcatt tggcctcaac atatatccct tcgttgctat ttcactatga tccaaagtag
      361 gaatatcgtc accatcatat cctgtagagg tataaacatt catgcgaact tgagttgcct
      421 tcattttcca agacccatct ggattttttg taattgtgtt ttggggatta aatctactat
      481 cacttgtagg attgttcatg ttgatatacc attcttcccc gctattcttt gtctggtaaa
      541 gtttttttat tccaaaaata tcattgtctg tgccagaact agcaaatggc aggtaaagga
      601 cttgttctcc cgtattgaat gaactgcctg aaaatgcatc tgttacttgc tgtgttgtca
      661 ggtcatcatt ccatactctg acttcatcta tctcgccggt aaagaagttt cctggtggag
      721 taactctgga attagcccca actcgtactg gttttgttcc tgaggtttca ggagttgcac
      781 tggatgttga tttggtggca acttgagcac catctatgaa tagcctaaga ttagaaccat
      841 catttgttac cactgcatag tgccattgat tattgttata tgaattgagc gaagtaacat
      901 attgatcgga accactactt gtctcaaatc ccgcctttat cttttcggtg cttgtcatcc
      961 atataccata attcaaattc tgaccagaac tgtcgcttcc tatgccgcct ttgttgacta
     1021 taaaagcatc tgatccaaag ttagatgacg ttttaaacca cgcagcaaca ctaaattgag
     1081 tgggtctaag cgaaaagcga actggaactt gcaacatctt ggtaatttga accgtctaag
     1141 accagcccag gtgaatattg atatcctgct tgagcatcag cactattaat aaaattttta
     1201 ttcattacgg tagtggagaa aaataatatt acccagcaaa agagcaaaaa gaatagacca
     1261 aaattcttag tgctttggaa agggtaaatt ttcttaaaaa tcaaatatga tggcaataaa
     1321 acaattctgt ttaataagaa ttcttctttt tgcgctcttt atatacagaa tcagatgtgt
     1381 cggagactac aaaaacatat tttattccca ttgttctcac tgactcattt aacatggagt
     1441 tcattctttc aacatcattt tttacctttg tttcgggata cttattcgtg ctagcaacaa
     1501 catactgaaa ctcctcttgt tggtatttat gaatttcata gattacgccc atgtccgaat
     1561 tactaaataa tcgactaatc atattatggt ccaaaaatat ttgacaagaa tatgaaacta
     1621 cgttgatatt gttatcacct caagttgatt tagataagcc tcgtatcctc tcatgaagtt
     1681 caatagctaa ttgagttgga tataaggtcc attttttttc aaccaatctc tacaatcctt
     1741 gtatgttgga attgcttctt ctaccaactg ccagaaacga tccgaatgat tgaattcaat
     1801 caggtgtatc aattcatgga ttataatgta atccatgata tgagagggaa gagctgacaa
     1861 tagtagatta aagttcaagt tgccatcttt agagcaactt ccccatctta atttttgatt
     1921 ttttatcctt acctttccat aagttataga taaccgtttt ccaaacaaag gcacttttgt
     1981 atccaatatc ttctttgttt gtgatcgata ccaatttatg atattttctt tctctcttcg
     2041 tctatctttt acatgaaatg agattttcag gagattttca gagagaatcc aatat
//
LOCUS       DASPFX010000293         2382 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1232312, whole genome shotgun sequence.
ACCESSION   DASPFX010000293 DASPFX010000000
VERSION     DASPFX010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1232312"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..1383)
                     /locus_tag="VD694_06400"
     CDS             complement(10..1383)
                     /locus_tag="VD694_06400"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAD55 family ATPase"
                     /protein_id="HXW12373.1"
                     /translation="MINKVNKVTTNLDIPSELEEFMKNDTYSLLVKGPSGSGKTTFSL
                     TILRSLKAKNNFFYISTRTSPKQIFEHHPWLRKYVKEPSRDIDSPDVGQNLSAFEDAR
                     LDEPESLFERVTNQLMDVKNPVIIIDSWDSVASLMDREARLNNERVLQTWRERAKAKL
                     IFTTEESVESSLENIVDGVIELDYELKDGIRTRSLFLKKLRGIPIKRSIYFFTLKDRI
                     MQCFHSYDARDFKIMNKDNIPRERESHTQILQSGFHDLDIYLGNTLPQNGLVTIEKDD
                     AVSNDTIILFMSDLLQNFSRMNYSLLLDSAVGLILHDMYKSKSKNQKKLYLMEEPDLQ
                     EKSSKNDSRRKNTFYNYIDNAISGRQTREKIVAMLDSSSMAGLVTSTFDIDSYCRYVK
                     RKFELSILILNSNNNPEKYYQFSDIHLKFILIYGTLFLKCSTPASALFGIKVVNSVPQ
                     IQLDHVL"
     gene            1690..>2382
                     /locus_tag="VD694_06405"
     CDS             1690..>2382
                     /locus_tag="VD694_06405"
                     /inference="COORDINATES: protein motif:HMM:NF014808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HXW12374.1"
                     /translation="MVIIEAENNVSSLKTKLLVNYVFTGEVSTLSLSDITNDFDPIIR
                     EIVESKEFTAKEGSMSVIHNKPGSSIRRVVLLGMGDKKNLEPEKTRNLTGKVVSKSKE
                     LATDEFVIVPFKDIDNEHVSAIVEGIKLSDYSFSNYKKDEDSTELNQVRILTGKNLPA
                     IQNIIKSASVLSDAVIFTRDISNLPPNDCSPKVLASFSEKLTANSKIKVRVIGKDEME
                     TYGFGGILAVGRG"
BASE COUNT          764 a          395 c          406 g          817 t
ORIGIN      
        1 aatataaagt tacaaaacat gatctagttg aatttgtggt accgaattaa caaccttaat
       61 tccaaacaat gctgaagcag gtgtcgaaca cttcaagaaa agtgttccat aaattagtat
      121 aaatttcaga tgaatatctg aaaactgata atatttctca gggttattat ttgaatttag
      181 aatcaaaatt gaaagttcaa attttctttt gacgtatctg cagtaactat caatatcgaa
      241 agtagatgtc actaggccag ccatggaact tgaatccagc atagcgacta ttttttctct
      301 agtttgacgt cctgaaattg cgttatcaat ataattgtag aaagtatttt ttcttctcga
      361 atcattctta gatgactttt cttgcaaatc aggttcttcc atcaggtaaa gtttcttctg
      421 atttttactc ttagatttgt acatatcatg taatatcaac cctactgcag aatccaaaag
      481 taaggaataa ttcattcttg aaaaattctg caaaagatcg ctcataaata gtattattgt
      541 atcattagat acagcatcat ccttttcaat agttaccaat ccattttgtg gtaacgtgtt
      601 gccaagataa atatctagat cgtgaaaccc tgactgcaat atttgcgtat gagattccct
      661 ttctcttgga atattatcct tattcattat tttaaaatct ctagcatcat aactatgaaa
      721 acattgcata attctatctt ttagagtgaa gaaatatatc gatcttttta ttggaattcc
      781 ccgaagtttt tttagaaaca aacttcttgt ccgtatccca tctttaagtt catagtctaa
      841 ttcgatcaca ccgtctacta tattttctag actagattcc actgattcct cggttgtaaa
      901 aatcaatttt gcttttgctc gttctctcca agtctgaaga actctctcat tgtttaacct
      961 ggcttctctg tccattaatg aggcaacaga atcccaactg tcaattatta tcacagggtt
     1021 cttaacatcc atcaactgat tagtaactct ttcaaagagc gattcaggct cgtccaatcg
     1081 agcgtcttca aaagctgaga gattttgtcc aacatcagga ctgtcaatat ccctacttgg
     1141 ttccttaacg tactttctca accatggatg gtgttcgaag atttgttttg gagaagttct
     1201 agtggaaata tagaaaaaat tgttttttgc tttcaatgaa cgtagaatgg tgagagaaaa
     1261 tgttgttttt cctgatcccg aaggcccctt gacaagtaag gagtaagtat catttttcat
     1321 gaattcttca agttctgatg gaatatcaag attggtagta actttgttaa ctttattgat
     1381 catatccctt cttaacgatt tgacaatact cacacttata gatatttaat aaatatccta
     1441 cttttttatc cttgattctt acaaaattat tgattaagtg tattgataac gatagtcaga
     1501 tgagttctaa ccctatggac tctatgttgt catgtaatta ttctgcaata tttcttgact
     1561 tgcttttttt gttctgtact tgtttgaatt ggctttcact cagtttttgg aatgaattca
     1621 taattagaaa tcttgcggta acatcaagtc ttcaatactt taaaataaag tatacttctg
     1681 attttgaaca tggtcattat tgaggctgag aataatgttt cgtcattgaa aacaaaactc
     1741 ttggtgaatt atgtctttac gggtgaagtt tcaaccttgt cgttatcaga tattactaat
     1801 gactttgatc ctatcattag agagatagtt gaatcaaagg aatttacagc aaaggaaggc
     1861 tcaatgagtg taattcacaa taagcctgga tctagtatta gacgtgttgt actattagga
     1921 atgggtgaca agaaaaattt ggaaccggaa aaaacaagga atctgactgg taaagtagtt
     1981 agcaagtcaa aagaattggc tacagatgaa tttgtaattg ttccattcaa ggacattgat
     2041 aacgaacatg tatcggcgat agtagaagga atcaaattat cagattattc atttagtaac
     2101 tataagaagg atgaagatag cactgagctc aatcaagtta ggatcttgac aggaaaaaac
     2161 ctgcctgcca ttcaaaatat catcaaatcg gcttcagtat tatctgatgc ggtgatattc
     2221 actcgagata ttagtaactt gcctccaaat gattgctctc caaaggttct tgcaagtttc
     2281 tcagaaaaat taacagcaaa ttcaaagatc aaggtaagag taattggaaa ggacgaaatg
     2341 gaaacgtatg ggtttggagg catactggca gttggtagag ga
//
LOCUS       DASPFX010000294         4895 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1244802, whole genome shotgun sequence.
ACCESSION   DASPFX010000294 DASPFX010000000
VERSION     DASPFX010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4895
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1244802"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..540
                     /locus_tag="VD694_06410"
     CDS             70..540
                     /locus_tag="VD694_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HXW12375.1"
                     /translation="MLGTVSTNSDVDEELFLGTAESEHVEMYLKAIWHIRERKEKVKV
                     SSIAKILNVRQPSVVQMLHKLNDTDLVEYSKGNSVMKLTPEGEQVGERMMRNTRLLEV
                     MMNEALKIEIDEEMVCGIEHHMKEIFTDALCTLLKHPRSCPHGYRIPPGKCCKK"
     gene            611..1705
                     /locus_tag="VD694_06415"
     CDS             611..1705
                     /locus_tag="VD694_06415"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HXW12376.1"
                     /translation="MSSEYNESWTMFRGNPRRTGSVRTKPLMRPLLYWTIKLGPIISS
                     PVYESGFLYVATMTGRIFCLDTLRREIRWHQNVGSPIVSSPLIMGDMMICATFDSWIN
                     GDSLENNYVYCLDKNDGSVVWNVQMKGNFFSSPCPAGENIALGSMDNNLYLLNSKGEI
                     IWNFETGGQVWSSPSYHENMFYFGSDDGFVYSVLTDGSLRWKSKLNGKIRSSSPCVSE
                     DSVFVGTYEGGMYCLNNIDGIPKWNKNISNPVLSSPLLVKDKVMFGTSDCTLYCFNLM
                     GSKLWEFEIVGKIWSSPSSSEFDRLMFFGGLDSFIYGINSSTGKQEWKFPTMGSIDSS
                     PCISNGMLFVGSRDGILYCFERYRDPSYIH"
     gene            complement(1745..3022)
                     /locus_tag="VD694_06420"
     CDS             complement(1745..3022)
                     /locus_tag="VD694_06420"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW12377.1"
                     /translation="MQISTSMYNYLIFVSIFAVFVSIVLYAQNIFAYGQETTKLPQVN
                     DTNLQIQEYSSGFKFPTGMNFLGPDDILVIEKNTGVVKEIKNGTVVGTVLDVNVANVS
                     ERGLLGIAIAREPKYVFLFYTETENVDGGKVLGNRLYRYEYDAGKLVNPKLLLDLPTI
                     PGPSHNGGVLKIGPDDKTVYLVIGNLNYVQNLTYITKAQNNKDGPPPDGRGGVLRVTF
                     DGGAVGGKGLLGDEDPLNKYYAYGIRNSFGIGFDAVTGNLWETENGRSTDDEINLVLP
                     GFNSGWREVIGFSNETDEFNAENLETFGGKGTYRDPEFIWRDTIAPTSVVFIHTDNLG
                     PKYKDNLFVGSVKNGTIFNFPLSENRMHLVLTGPLADKAADNNQETGSVTFGRNFGII
                     TDLQIGPDGNLYVLSNYKHDGTIFKISAKGNAN"
     gene            3416..4588
                     /locus_tag="VD694_06425"
     CDS             3416..4588
                     /locus_tag="VD694_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12378.1"
                     /translation="MKINLGFGIFLLFGIFLASYVLSSPALAQLPSATGIGVKIDTPA
                     DSASLPVGDLTIYGTSSDSNTTNCQVFADWNDLKPMQTVNANGPEGSSDYSKWSFTYT
                     GSYHGITEGANELTSKITCSEQGQNASSKSYSINVTGIKATNEIANNNTQKSTEVVDT
                     KDVANEDTNILPVNSNTSNTDSINNTVQSTEDVDVDDVSNEDVGSEDIPVLPIDNNKD
                     NGTYKILPLYSESDEESTTSTSSEDSGQSYIRNMKTAGSQDGVTSTGTIDTGSGTYNT
                     FSSDQQGTIDETNNMDMTSTEASDEGLASHGESNTFFTYEPDLAEDASNQNDVNTFVT
                     SSDTGSSFSNHQIDDNSIFGLKFNGLDDVAQNKIEKRIEKLEDRITDRMSLFDLIG"
     gene            4692..>4895
                     /locus_tag="VD694_06430"
     CDS             4692..>4895
                     /locus_tag="VD694_06430"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HXW12379.1"
                     /translation="MSDLKFTKVNNLHVRYLDRNKRGTPLLLLHGLGGSIESWTNNIR
                     SLSTKFRIIALDLPGFGLSDKPKI"
BASE COUNT         1580 a          881 c          878 g         1556 t
ORIGIN      
        1 taaaaaaata tgttcagaaa attgtcgaac ggaaccttaa taattatatc attataaaga
       61 ttatatcgaa tgttaggaac cgtcagcacg aattctgatg tagatgaaga gctattcttg
      121 ggaactgccg agtctgaaca cgttgaaatg tacttgaagg caatatggca tattcgtgaa
      181 cggaaggaaa aagttaaagt tagttccatt gccaagattt tgaacgttag acaaccttct
      241 gtcgttcaaa tgcttcacaa actaaacgac acagatcttg ttgaatattc aaaaggcaat
      301 tctgtcatga aattgactcc agaaggagag caagtaggag aacgtatgat gagaaataca
      361 agactcttgg aggtaatgat gaatgaagct ctaaaaatag aaattgacga agagatggtg
      421 tgtggaatag aacaccacat gaaggagata tttaccgatg cattatgtac attgttaaaa
      481 catccccggt catgtcccca tggatatcgt attcccccgg gtaaatgttg caaaaaatga
      541 actattgaat ttttccacat ttctaattat tatcgtggat tatcccaatc tcgtttaaga
      601 aaaattaggt atgtcaagtg aatataatga atcatggacc atgttccgcg gaaacccgag
      661 aagaacaggt tctgtaagaa ccaagccact aatgagaccg ttactttact ggactatcaa
      721 gttgggtcca ataatttcat cgcctgtata tgaaagcgga tttctatacg tagctaccat
      781 gactggacgt atattttgct tagatacact aagaagagaa ataagatggc atcaaaacgt
      841 tggtagtcct attgtatcgt caccactaat tatgggtgat atgatgatat gcgccacatt
      901 tgattcatgg ataaatggcg atagtttgga aaataattat gtatattgcc ttgataagaa
      961 tgacggaagc gttgtttgga atgttcagat gaaagggaat tttttttcat caccgtgtcc
     1021 tgcaggggaa aatatagctt tagggtcgat ggataataac ttgtatcttc ttaattcaaa
     1081 gggtgaaata atttggaact ttgaaacagg aggtcaagtt tggtcttctc catcttacca
     1141 tgaaaatatg ttttattttg gctcagacga tggttttgtc tactctgttc ttactgacgg
     1201 atcactgaga tggaaatcaa aattaaatgg caaaatacgt tcgtcgtcac cgtgcgtttc
     1261 agaggattca gtctttgttg gaacatacga gggaggtatg tattgcctga ataacattga
     1321 tggtattcca aaatggaaca aaaatatttc aaaccctgtt ttatcatctc ctttattggt
     1381 taaagataag gtcatgtttg gaacttctga ttgcacactt tactgcttca acttgatggg
     1441 ttccaaatta tgggagtttg aaattgtcgg aaaaatttgg tcttctcctt catccagtga
     1501 atttgacaga ctgatgtttt ttggaggtct ggattcattt atttatggta taaattcttc
     1561 tacaggcaag caagagtgga aatttccgac aatgggatct attgactctt ctccatgtat
     1621 atcaaacggc atgttgtttg ttggttcacg agatggtata ttgtattgtt ttgaaagata
     1681 tagagaccca tcgtatattc attaagtatc cacttaattc atgaatttga aaataaaaaa
     1741 atgcttaatt agcgttacct ttagcagata tcttgaatat cgtaccatca tgtttgtaat
     1801 tgcttaatac gtacaggttt ccatcaggcc cgatctgaag atcagtgatt attccaaaat
     1861 ttctaccaaa agttacactg ccggtttcct gattgttatc tgctgcttta tccgctaatg
     1921 gacctgtgag aactagatgc atcctatttt cggacaatgg aaaattaaaa atagttccgt
     1981 ttttaacact tcctacaaat aggttatcct tgtactttgg tccgagatta tctgtatgta
     2041 tgaatacaac cgatgttggt gctattgtat ctctccaaat aaactctggg tccctgtaag
     2101 taccctttcc accaaatgtc tccaagtttt ctgcattaaa ttcatcggtc tcattagaga
     2161 atccaattac ttctctccat ccgctattaa atccgggtaa tacgagattg atttcatcat
     2221 cagtacttct gccattttca gtttcccaaa gatttcctgt taccgcgtca aaccctatac
     2281 caaaactatt tcgtatacca taagcgtaat acttgttcag tggatcttca tctccaagta
     2341 accccttacc acctaccgct cctccatcga atgtaactct tagtactcca cctctgccat
     2401 ctggtggagg tccgtcctta ttgttctgag ctttagtgat atatgtcaaa ttttgaacat
     2461 aatttaggtt accaattact aggtacactg tcttgtcgtc gggaccaatt tttagtactc
     2521 cgccattatg agatggtcca ggtattgttg ggagatccaa aagtaatttt gggtttacta
     2581 gcttgccagc atcatactca tatctataca gtcgattacc caatacttta cctccatcaa
     2641 cattttctgt ttcagtataa aataagaata catactttgg ttctcttgca attgcgatgc
     2701 ccagcaaacc tctctcactc acatttgcaa cgttcacatc taacacggtt ccaacaacag
     2761 taccattctt gatttccttt actactccag tgttcttttc gatgacaaga atatcatcag
     2821 gtcccaaaaa attcattcca gttggaaact taaatcctga agaatattcc tgaatttgca
     2881 aatttgtatc atttacttga ggcaatttag tggtctcttg gccatatgcg aagatatttt
     2941 gagcatacag tactatggat acaaagacag caaaaattga gacgaaaatt agataattgt
     3001 acattgaagt tgaaatttgc aagtgaagac tacacaaaat aactggttta aattatttat
     3061 taacgtttac tatagagata aaatccatca aatagcttca aaagcctgag taaaatgagt
     3121 tcaaatatga aaaattacaa agtaatcaag attatcgcaa cacatatgat aatggaaatt
     3181 gactattaat tggatttgaa ctagtcaagt ttacaccata agtaagattt tttgcatttt
     3241 catcatggtt aatatcattc ctccttcggc tgccatagtc tcaacattcg ataatatggg
     3301 ttagatattt tatcatcaaa tgaataagga ctgttttaag taactttctt ctctaattcg
     3361 cctattgaaa aattcttgaa aattcatatt aattattttt ctttactaca tctatatgaa
     3421 aattaatctt ggcttcggaa ttttcttact atttggtatc tttttagctt cttatgtgtt
     3481 gtctagcccc gcacttgcac aacttccttc agctacagga ataggagtta aaattgatac
     3541 tcctgcagat tctgctagtt taccagtcgg agatttgact atttacggca cttcttcaga
     3601 tagtaatact actaactgtc aggtatttgc agattggaat gatttaaaac caatgcaaac
     3661 tgtcaatgcg aatggtcctg agggaagttc agattattca aaatggagtt tcacctatac
     3721 tggaagttat catggcataa cagaaggtgc taatgaactt acttcaaaaa taacatgttc
     3781 tgagcaaggt caaaatgcat cttcaaagtc ctattccatt aatgttactg gaataaaagc
     3841 cacaaatgaa attgcaaaca ataacactca aaaatccact gaagtagtag atactaaaga
     3901 tgtagctaat gaagatacta acattttgcc agtaaacagt aacaccagca atactgatag
     3961 catcaacaat actgttcaat ccactgagga tgtggatgtt gatgatgtat ctaatgaaga
     4021 tgtaggtagt gaagatatcc cagtattgcc aatagacaac aacaaggata acggtactta
     4081 taaaatcctt ccactatact cagaatctga tgaagaatca acaacatcga cttcatctga
     4141 agattctggc caatcataca taagaaatat gaagacggct ggatcgcaag atggagtcac
     4201 ttctacagga actatcgata caggttctgg aacttataat acatttagct cagaccaaca
     4261 gggaacgata gatgaaacaa ataacatgga catgacttct acagaagctt cagatgaagg
     4321 cttggcttct catggtgaat ccaatacctt ctttacatat gaacctgatc tagcagaaga
     4381 tgcgtctaat caaaatgatg taaatacgtt tgttacaagt tcggatactg ggagttcctt
     4441 ctccaatcac caaattgatg ataattcaat attcggactt aaattcaatg gacttgatga
     4501 cgtcgctcag aataaaatag aaaagagaat cgaaaaacta gaagatagaa ttaccgatcg
     4561 tatgagcctg ttcgacctaa taggttagtt attaatgtta gagacgactc aatacatatc
     4621 tatctaggat ttgtacagtg gaaccatgtt catgttatta aatcatactg caattatttt
     4681 tcctgattat aatgtctgat ctcaagttta ctaaagttaa taacttacac gtcagatacc
     4741 tggacaggaa caagagaggc actccccttt tgcttcttca tggcttggga ggttctatag
     4801 aaagctggac taataatatt agatctttat caaccaaatt tagaataatt gctctagatc
     4861 ttccgggctt tggtctgagc gataaaccaa aaata
//
LOCUS       DASPFX010000295         3690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1418831, whole genome shotgun sequence.
ACCESSION   DASPFX010000295 DASPFX010000000
VERSION     DASPFX010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3690
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1418831"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            273..485
                     /locus_tag="VD694_06435"
     CDS             273..485
                     /locus_tag="VD694_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin family protein"
                     /protein_id="HXW12380.1"
                     /translation="MTHVAKIIEIIGSSQNGWEEAAQVAIDEAKKTIHGIHGLEIIDM
                     TAKVDPNTGKITEYRAGVKISFAVEH"
     gene            complement(728..1585)
                     /locus_tag="VD694_06440"
     CDS             complement(728..1585)
                     /locus_tag="VD694_06440"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HXW12381.1"
                     /translation="MSTMSYAHPEVLVDTQWVEDHLKDSNARIAEVDYDPKANYQLGH
                     VPGAVLFDWRQDINDPVSRNVLNKQACEDLLQRAGVNNDSTLVLYGDFNNWFAAFAFW
                     VFKYYGFKDVRIMNGGRKKWLEEDREVNKDIPNYPKGNFKATDPDKNIRVFLDEVKHS
                     LDAKDRIRMVDVRSPKEFTGEILAPPEYPTEHAQRGGHIPGAENIPWAQAVNDKDGTF
                     KSADELKKLYESKGITPDKEIIAYCRIGERSSHTWFVLKYLLGYPDVKNYDGSWTEWG
                     NMIANPIEK"
     gene            2210..2443
                     /locus_tag="VD694_06445"
     CDS             2210..2443
                     /locus_tag="VD694_06445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12382.1"
                     /translation="MSTEYEEGSAGTEKGRKDDPLKEYREKEAMTPAKEKAHEPTAVK
                     RDPSKIDEDVAKSPEESREKLRRSGMAKGTDKA"
     gene            2580..3551
                     /locus_tag="VD694_06450"
     CDS             2580..3551
                     /locus_tag="VD694_06450"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HXW12383.1"
                     /translation="MADIGRQHQQTIINLYDSGILPDIISMQLDINKDEVYQVIKNQA
                     REEQRKQIAVKQVSDASTLGAFNLDTIINIDLAIKHAQHSMWNALKGAEPQFNISMIE
                     ETQDILEKYAKSKVTFVILHIDIVGSTAMSMTLPVERLATIIQTFTQEMSIIIAAYGG
                     YVLKYIGDAILAFFPVNPDNTSLPCINAANCAYSMIKIMHEGLNPILNEYDYPEMGVR
                     VGIDIGENIVVQYGWDNRTYTAKKNKQKIFKKPHLDILGYTNSIAAKMTAFAKPNQII
                     IGQLVYNILDEVQKSTFKVLPLNSDAWSYVSNITGEVYSLYGSNIRK"
BASE COUNT         1222 a          632 c          653 g         1183 t
ORIGIN      
        1 acctcattca catttgaaaa actgttggtc ttgaggcttt cttcactgtc tattctaact
       61 gctgttaatc taaacccttt cccgcaattc ttacaactaa ctattacgac catttttgaa
      121 gcagctaaca tggttatact ctttaaagtt tccattctat ggtcttagat ggaatagaag
      181 gatttactcc acaagggaaa taggttgtta ttcaaattat tttctatagc ttatttcata
      241 ccttttttat attaagaaga acataatccg ttatgaccca tgtcgcaaag ataattgaga
      301 ttattgggag ttctcaaaat ggctgggaag aagctgctca agtagccata gacgaggcta
      361 aaaagacaat acatggtata catggattgg aaataattga tatgactgca aaagttgatc
      421 caaatacggg caagatcaca gaataccgcg ctggagtgaa aatatcattt gctgtagagc
      481 attagataat taagacgcac gttcaaaatt taacgagttg caagttattg atacctttca
      541 gtgtaatttc acctttgata acaaggatat cgtctaatat tatcacatat gtatgacgca
      601 taataataac tcagtatcag gctccttgaa gaagcggatc cttattttcg aagatttttg
      661 acactttccc tatgttcaat attattactc ctttattctg accttttcta gttgtaattg
      721 gggtctctta cttttctata ggattagcaa tcatgttacc ccattctgtc cacgagccat
      781 catagttttt tacatcagga tatccaagta agtatttgag aacaaaccat gtatgagaag
      841 acctctcacc tattctacaa tatgctatta tttccttgtc tggagttatt ccctttgatt
      901 catacaattt cttcagttca tctgcagact taaaagtacc atctttatca ttgacagctt
      961 gagcccatgg aatattctct gcacctggga tatgtcctcc tctttgtgca tgttctgtag
     1021 ggtattctgg tggagctaat atttcacctg taaattcttt tggacttctt acatctacca
     1081 ttctaattct atccttagca tctagagagt gttttacttc gtctaaaaat acacgaatat
     1141 ttttatcagg gtctgtagcc ttgaaattac ctttaggata atttggaata tctttgttaa
     1201 cctccctgtc ttcttctaac catttttttc tccctccatt cattattctg acatctttga
     1261 atccatagta cttgaatacc caaaatgcaa aggctgcaaa ccagttgtta aagtcaccat
     1321 acagcacaag tgtcgaatcg ttattaactc ctgctctttg taaaaggtct tcacaagctt
     1381 gtttgtttag tacgtttctg ctaacaggat cgttgatatc ttgtctccag tcaaataaaa
     1441 cagcacctgg cacatgtcct aattgataat tagcctttgg gtcatagtca acctctgcaa
     1501 ttcttgcatt ggaatctttt aagtgatcct ctacccattg agtgtctact aatacctcag
     1561 gatgtgcata gctcattgta ctcatattat ttcaagaata actacccttg ctataatcca
     1621 tagctaaatt agatttggtt gtcatatggt tgttatcatt tgtacgctgc atcaaaacta
     1681 tttaaacgcc attaagttga gtcaattaag cataagatgg cggctagagg catctggagg
     1741 agaagctttg aatttatgga agaaaatatt agaaacggcg aagcggtttt atcataagta
     1801 tatagcatgt aatgctaagg agaatacgtg agtatttgtt catagtaaat tataattaat
     1861 aaattcgact acaaattgtg ttgcaacgaa caaaagataa ttcgagtttc cagactagga
     1921 gtaaatgcgg ttaaggtgtt tcatgaaacc tcaaaatggt gtagtttcta ctgggttctc
     1981 tacagcagaa acggtatagt aatttcctat ctcacatctt caaacattta gtataaataa
     2041 atagatttta aatcgcattt tcaaatctat tgcttctgta aataaattag caactattaa
     2101 atgcatattt tgcatttatt tggatcctta tacccaagta tgtacttttg tgtgaataat
     2161 ttagatgcaa tgaacaactg ataaatagct ccttgtgtac caaattaata tgtccacaga
     2221 atatgaggag ggctctgctg gaacagaaaa gggaagaaaa gatgatccac taaaggagta
     2281 tagagaaaag gaagcaatga ctcctgcaaa ggaaaaagca cacgagccca cggcagtcaa
     2341 aagagatcct agcaaaatag atgaggatgt tgcaaaatct ccagaggaat caagagaaaa
     2401 acttagaaga agcggtatgg caaaaggtac agataaagcc taaaaaatca attttttttg
     2461 accaatttgc aaacaggtaa ttccattact tagattaaag aaagattatg ttcctagtgc
     2521 gtgttaatga agaaaatggt gatggtcaat ttcgaaataa ctagaaaggg atgtaatatt
     2581 tggcagatat aggacggcaa catcaacaga ctattatcaa tctgtatgat tctggtattt
     2641 taccagatat aatttcaatg cagctagata ttaacaagga tgaggtatat caggttataa
     2701 aaaatcaagc cagagaggaa caaagaaaac aaatagctgt aaaacaggtt tcggatgctt
     2761 caacattagg tgcgttcaat ctcgacacaa ttattaatat tgacttagcc atcaaacacg
     2821 cacagcatag tatgtggaat gctttgaaag gagcggaacc acagtttaat atctcaatga
     2881 tagaagaaac gcaggatatc cttgaaaaat acgcaaaatc taaagtcaca tttgtaattt
     2941 tgcatattga tattgttggt tcgactgcga tgtctatgac tttgccagtg gaaagacttg
     3001 caactataat acagacattt actcaagaaa tgtctattat tattgcagca tatggtggat
     3061 atgtattgaa gtatattggg gatgctattc tagcgttttt ccccgtaaat ccagataaca
     3121 cttctttgcc ttgtattaac gcggcaaatt gtgcatattc tatgatcaag ataatgcacg
     3181 agggtctaaa tccaatccta aatgaatatg attatcctga gatgggagta cgtgtaggta
     3241 tagacattgg cgagaatatt gtagtacagt atggctggga caatcgtact tacacagcaa
     3301 agaaaaataa acaaaaaata tttaaaaaac cccatcttga cattctgggt tatactaata
     3361 gtattgctgc aaaaatgaca gcatttgcaa aacccaatca aattataatt ggtcagcttg
     3421 tatataatat attggatgaa gtacaaaaat ctacttttaa agttctcccg cttaattcag
     3481 atgcttggag ttatgtcagt aacattactg gagaagttta cagtttatat ggtagtaata
     3541 taaggaaatg aagaaaacac atactttggt ctgtggcatg taaatacaac atctataata
     3601 atttataact agttaaaaaa tgggatttaa agagcggtca ctgcatgact agcgctactc
     3661 caaatagatt ttataactct atcgtctttt
//
LOCUS       DASPFX010000296         3047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_377224, whole genome shotgun sequence.
ACCESSION   DASPFX010000296 DASPFX010000000
VERSION     DASPFX010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377224"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..477)
                     /locus_tag="VD694_06455"
     CDS             complement(<1..477)
                     /locus_tag="VD694_06455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12384.1"
                     /translation="MRKEASGDSKTESITLRVEKKVLNKLREEADRTLKSVNVLGNQV
                     FKFYVNWHSVAVDAGFIYVDRKNFSRIIEKLTEAEIDQVLDEFFEKEFAGRIKMISGD
                     MDMEHFLKAMEGWLLGSGFHYRHMTNNEVETYVIQHDMGNKSAYYLRSYFKRALEFV"
     gene            818..1846
                     /locus_tag="VD694_06460"
     CDS             818..1846
                     /locus_tag="VD694_06460"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HXW12385.1"
                     /translation="MKPAQVQTRIYSSLSEEESINELSLSIKKHGLLQPIIVRPINRG
                     FEIVAGHRRFQACKLLRWKTIPAMVKDVSDKDAFEIQLVENIQRKTLDPIEEAQAFKL
                     YVRDYGWGGVTYLAETIMKSEQYVSSRIQLLKLPQNVIDKVKSGELKVSHAFELLSLE
                     GKGLENMSDDILNKNMSVKDIRRYKHQLAFVKDKESVENTAAAVETKANMEMEMETGT
                     KTVNTMYDKDGYSNDGFLFPTNSEKDHIHEHLHHKLMFLKKVQLSLKASLSRADSLIH
                     EYEESVATEIKVTSSQNNVHLETEVYGDSDNISKMLMRFRLGIHSMLDETIRSTSKLT
                     KEESISKN"
     gene            complement(2023..>3047)
                     /locus_tag="VD694_06465"
     CDS             complement(2023..>3047)
                     /locus_tag="VD694_06465"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HXW12386.1"
                     /translation="LGIEPFNEPHPVGLHDFEPKYLFQYYLNIESEIRKYDNKTFLFI
                     EPGVDWTMAERESDVPQPAHGPFSIKRTFNLGFIRNTMIEGKVVKKNIHTYLPKGELI
                     EALKHRSVLSFHYYEPLAILGALAKIPENMYRFKIEWPDIFAQLVIAATERDLIPFLT
                     EFGGVQGDEQFREFIDLQFAQIESNLLNSTYWNYDLYNTVEGKDNWNMEDFSLLGPAR
                     TPRNIEVIARPYPLRSSAEPTLLSFDINSKNAAIVLSGEIIKDSPTVIYVPYHYHYSP
                     SFRVWATSKEMEWDKANQLMYWYPSSNETDNLIIFGKNEKLDTELLSKKLETLLTKTE
                     FVGSFT"
BASE COUNT          987 a          558 c          544 g          958 t
ORIGIN      
        1 cacaaattca agtgctctct tgaagtaact cctaaggtaa taagcagatt tgtttcccat
       61 atcatgttga attacatacg tttcgacctc gttatttgtc atgtgtctat aatgaaatcc
      121 tgagcccaac aaccatcctt ccattgcctt taagaaatgt tccatatcca tgtcaccaga
      181 gatcatcttg attctaccag caaattcctt ttcgaaaaat tcatctaata cttgatctat
      241 ttccgcttcg gttaattttt caattattcg actgaagttt ttcctgtcta catatatgaa
      301 tccagcatct accgcaacag aatgccaatt tacataaaac ttgaatactt ggtttcccaa
      361 gacgttgacg cttttcaatg ttctatctgc ttcttctcgt aatttgttta acaccttctt
      421 ttcaactcta agcgtaatac tctctgtttt gctatctcct gacgcctctt tgcgcatctg
      481 gagtataatt gcatttgatt taaataaaaa tattacttta attacgttaa atgcgacaat
      541 ttttttactc tctaaatatt ttgtaaatta gtcttcaggt atttacatta gcagggtata
      601 tctcaatcgt aaaactctat gtttcataat attatgggca ttcacgagac aagatgtgtc
      661 aacgtgtttt caatcacgaa gggtaagatg aagaggaaag gcatacggac tggcagacct
      721 tcattcgata aggctgttat caatctacat agaggaggca catttcacac tgactactga
      781 tacacctata gtcgaagaaa ggttaccatt accttttata aaacctgctc aggttcaaac
      841 aagaatatac tcttctttat cagaagagga atcgattaat gaactatcgt taagcattaa
      901 aaagcatggc cttctccagc ccataattgt cagacctatc aatcggggat ttgaaatagt
      961 ggccggtcat cgaagatttc aagcttgcaa attacttcgc tggaaaacta tacctgcaat
     1021 ggtaaaggat gtatctgata aagatgcatt tgagattcag cttgtcgaaa atatacagag
     1081 aaagactcta gacccaattg aagaagctca agcattcaaa ttatatgtta gagattatgg
     1141 ttggggtggg gtaacttacc ttgcagaaac aataatgaaa agcgaacaat acgtttcaag
     1201 tagaattcaa cttctaaagc ttccacaaaa tgtaatagat aaagtaaaat ctggcgaatt
     1261 gaaagtatca catgcatttg agcttcttag tttagaaggc aagggtcttg aaaacatgtc
     1321 ggatgatata cttaacaaaa atatgtctgt aaaggatatt cgaaggtaca aacaccagct
     1381 agcttttgta aaagataaag agtcagtaga aaatactgct gctgcagtag aaacaaaagc
     1441 aaacatggaa atggaaatgg aaacaggaac aaaaacagta aatacaatgt atgacaaaga
     1501 cggttattca aacgatggct ttctttttcc aacgaatagt gaaaaagacc atatccatga
     1561 acacttgcat cacaagctca tgtttcttaa gaaggtacaa ttatcattga aggcctcatt
     1621 atcaagagca gatagcttga tacatgaata tgaagaatca gttgctacag aaattaaagt
     1681 gactagttct cagaataacg tacatcttga aaccgaagtg tatggcgata gcgacaatat
     1741 ttctaaaatg ctaatgcgct ttagacttgg cattcattcg atgttagatg aaacaattcg
     1801 atcaacctca aaactaacta aggaagaatc catttcaaaa aattaatctt tttccactct
     1861 cattgtctcc atttaaagga ctatagcggc cagacttgtt ggtaggagca tttcaattct
     1921 atcctcaaca taatttcagt aagttactcg acgtcgagta aaatggcttt gggtgtttca
     1981 atttagtggc atagtaagaa tgtgctagga attgatctcc gcctacgtaa acgagcctac
     2041 aaactcagtt ttagttagaa gggtctccaa ttttttagat aataattcag tatctaactt
     2101 ttcgttttta ccaaatataa ttagattgtc ggtttcatta gatgaagggt accaatacat
     2161 gagctgattc gctttatccc attccatttc tttgctagtt gcccagactc taaaactggg
     2221 agaataatgg taatggtagg gcacataaat aactgtcggt gagtctttta ttatttctcc
     2281 agaaaggact attgctgcat tcttggaatt aatatcaaaa gagagtaaag tgggttctgc
     2341 agaactacga aggggataag gtctagcaat tacctcaata ttgcgaggtg ttcttgccgg
     2401 gccaagtaaa gaaaagtcct ccatgttcca attgtccttt ccttcaacag tattataaag
     2461 atcatagttc cagtaagtgg aattaagtag gttggattct atttgagcaa attgaagatc
     2521 tatgaattcc cgaaattgtt cgtctccctg aacaccgcca aattctgtaa ggaatggaat
     2581 cagatcccgt tcagttgcag ctataactag ctgtgcaaag atatcaggcc actctatctt
     2641 aaacctgtac atattttcag gaatttttgc aagtgctcca agtatggcaa gcggttcata
     2701 ataatgaaat gatagaacac ttctatgttt tagagcctca attaattccc ctttgggtag
     2761 ataagtatgg atattttttt taacgacttt accctctatc atggtattcc gaataaatcc
     2821 caaattaaat gtgcgcttaa tactaaatgg gccatgggct ggttgaggca cgtcactttc
     2881 tcgctcagcc atagtccagt ctacccctgg ttctatgaac aagaatgttt tgttgtcata
     2941 ttttctaatt tcagattcta tatttaggta atactggaat agatattttg gttcaaaatc
     3001 atgaagtcca acaggatgtg gttcattgaa aggttctatt cctaaaa
//
LOCUS       DASPFX010000297         3369 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1777143, whole genome shotgun sequence.
ACCESSION   DASPFX010000297 DASPFX010000000
VERSION     DASPFX010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1777143"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..744)
                     /locus_tag="VD694_06470"
     CDS             complement(<1..744)
                     /locus_tag="VD694_06470"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HXW12387.1"
                     /translation="MIPVVGYAAKKANGPLASYSFKRREPLDHDIVIDIQNCGICHSD
                     IHQVKDEWGGSTFPIVPGHEIAGTVSQVGSKVSQFTVGDRVGVGCFVDSCRRCSPCCK
                     GLEQYCVEGCSLTYNGVERNGKTPTQGGYSNKIVVDENYVLRIPDKLPLDRAAPLMCA
                     GITLYSPLKHWKAGPGRKVAIIGFGGLGHMGVKIARALGAQVTVLSHSIKKLEDAKRM
                     GAHHFYATSDPKTFENLKGYFDLIVNTVSV"
     gene            1060..1269
                     /locus_tag="VD694_06475"
     CDS             1060..1269
                     /locus_tag="VD694_06475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12388.1"
                     /translation="MNTNTKTTMTILAIAAISLTVMANIDAIAFVNTAVAQNMTANAT
                     DTSNMTTFEENATSAGNASFSSGIT"
     gene            1779..2750
                     /gene="tfb"
                     /locus_tag="VD694_06480"
     CDS             1779..2750
                     /gene="tfb"
                     /locus_tag="VD694_06480"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HXW12389.1"
                     /translation="MLRRESADIDENFRPSSLKSPSIGCLVCHKVSKAITDTESGEII
                     CSGCGVVLTEYSEEHHDERSISASHHMKDKIIPTNPFSSYNNTGVMTEIGRTNKDFSG
                     HELNVAMRSTFERLRTWDKRMRLYGSRSKYGMSNNASLWKIFYRLGILKVRLGLPSII
                     VEKAAYIYRKAQQRKLVSGGRTISAVLAAAVYITCREIGTPRPLNEIAKVSDIKRKDI
                     ARNYRILIKELDLQVPIIDPMKCIIRVANTVEINERTKRHALKIMDEAISKEIPAGKD
                     PMGLSGAIVYAVCKKAGQDITQADIAKAAGTTHVTIRKRFRELEGIL"
     gene            2876..3040
                     /locus_tag="VD694_06485"
     CDS             2876..3040
                     /locus_tag="VD694_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12390.1"
                     /translation="MNSDAKIPVDYTAMPHAIFSSPQVAGVGVTEQQLKWQNKNNYLK
                     SIYPYTNRDG"
     gene            3033..3239
                     /locus_tag="VD694_06490"
     CDS             3033..3239
                     /locus_tag="VD694_06490"
                     /inference="COORDINATES: protein motif:HMM:NF014860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12391.1"
                     /translation="MGEALEERDGFVKLLVNREDKKILRCHILGTDASTLLHEVLVAM
                     RAGDGKIDGITNHTYTSSTIRSSF"
BASE COUNT         1104 a          632 c          691 g          942 t
ORIGIN      
        1 tactgaaacc gtattaacaa ttaagtcaaa atatcccttg aggttctcga aagtcttagg
       61 atctgacgtt gcataaaaat gatgggctcc catcctcttg gcgtcttcca gttttttaat
      121 agaatgacta agaacagtaa cttgcgcacc aagtgcgcgg gcaattttta ctcccatatg
      181 gcccaggcct ccaaagccta ttatggcaac tttccttcca ggaccagctt tccagtgctt
      241 caaaggcgaa taaagtgtga tgcctgcaca catgagagga gcagcgcgat caagagggag
      301 tttgtcagga atcctaagaa cgtaattctc atcaaccact atcttgttcg aatagcctcc
      361 ttgggtcgga gttttgccgt tcctttcgac tccgttgtag gtcagggaac atccttctac
      421 acaatattgc tctaggccct tgcaacacgg cgaacatcta cgacaagaat cgacaaagca
      481 acctacgccc actctgtcgc ccactgtgaa ttggctaact tttgagccaa cctgagatac
      541 tgtacctgca atctcatgtc ctggaacaat cgggaaggtt gatccccccc attcatcttt
      601 cacctgatgt atatctgaat ggcaaattcc acagttctgt atgtcgataa cgatatcgtg
      661 atctagaggc tctcgccttt taaaagagta ggaagcaaga ggcccgttag ctttcttggc
      721 tgcatatcca acgactggaa tcattctttt tcttcatcta attacatgga gactagtaat
      781 aagtaatggg gatatgtttg gttcatgcta gcagattaaa ggtttgcgca gctattaaga
      841 cgctttccgg taccaacaat gggctaggtt gtgagacctc ttgaacaaga ttagatgttg
      901 ggatgggaca agttctctac ttcatgatgg ctttaataat aataaacgca caatttatac
      961 aaaaataagg ctagtagaac ctgtgtaaat cttcagtcaa gcttggcgga cattatgcgg
     1021 gggtacttct ttataaataa tgacggccca attacaagca tgaatacaaa tacaaaaaca
     1081 actatgacaa tccttgctat tgctgcaata tctctaacgg tgatggcaaa tatagatgct
     1141 attgcctttg ttaatacagc agttgctcag aatatgacag ctaatgctac tgataccagt
     1201 aacatgacaa cgttcgaaga gaatgcgaca tctgctggaa acgctagctt tagcagtgga
     1261 ataacataaa gcaaatcaca gtaattataa acatttcttt tttgcataac tttgttatgc
     1321 attactgtat agcttttgtc tgttgtaacc tgcctctcgt tcgcttgttg taaagtcgga
     1381 taattattcg aaaaaatagt ctttcttact ataagtcaac atttcgtcac agcttggaca
     1441 ttgctcagcg ttgtttgcaa gaacagtggc ctcaagggct acctcattga tttgggtaaa
     1501 tgaaggaaat ttaaaaccac aatttttaca tctgaccatt aatttggtca acaacgatta
     1561 tgaactggcg atatatatca aaattatgga agatcctttt cagaccagat aaaacttatc
     1621 cgatttgctc tcagtccccg gagtaaagcg tcatgtaaat aactgtaaga aagaaaaaag
     1681 aatgatacgt cagttagata tttcccataa acttatcttt atcttgatat taaatactga
     1741 aattctaata cgcgaatact aatgggaagc gagaggagat gcttcggaga gaaagtgcag
     1801 atatagatga gaatttccgt ccttcttcct taaaatcacc ttcgattgga tgtttggttt
     1861 gtcataaagt ctcaaaggca ataacagata ccgaatcagg cgaaattatt tgcagtggtt
     1921 gcggggtggt gttaaccgaa tatagcgaag aacatcatga cgaaaggagt atttcggcaa
     1981 gccatcacat gaaagataag ataataccaa ctaatccatt ctcttcatat aataatacag
     2041 gggttatgac agaaatcggg agaacaaata aggattttag tggacatgaa ttgaatgtag
     2101 ccatgcgttc aacatttgaa agattgagaa cctgggataa gagaatgcgg ctatatggtt
     2161 ctagaagtaa atatggtatg agcaataatg ctagcctgtg gaagattttc tatcgacttg
     2221 gaatattgaa ggttagactc ggattaccga gtataatagt agaaaaagcg gcctacatat
     2281 atagaaaggc tcaacaaaga aaactagtat cagggggcag aactatttct gcagtattgg
     2341 cggcagctgt ttatattacg tgtagagaga taggaactcc tagaccctta aatgaaattg
     2401 caaaggttag tgacatcaaa cgtaaagata ttgctagaaa ttataggatc ctaataaaag
     2461 agcttgactt acaagttcca ataattgatc ctatgaagtg tattatcagg gtagctaaca
     2521 cagtggaaat caacgaaaga acgaaacgtc atgcactaaa aataatggat gaagctatta
     2581 gcaaagaaat acctgcagga aaagatccca tgggtttatc cggagccata gtttatgcag
     2641 tttgtaaaaa ggcaggacaa gatataaccc aagcagatat agcaaaagca gctggtacaa
     2701 cacatgttac tataagaaaa agattcagag agttggaagg aattttgtga taagtgaatt
     2761 tggtttgttg gcgcaggatc tcaagtagca actatcctat acatagtcaa aaagagaact
     2821 aatttgagct ctaaggtcac attaagcaat aggacgatat gcttatctta atatattgaa
     2881 ttcagatgcg aaaatacctg ttgattacac ggctatgccg catgccattt ttagctctcc
     2941 tcaagtcgca ggagtaggag tcactgaaca acaacttaaa tggcaaaaca aaaataatta
     3001 tctaaaatct atctatccct atacaaacag ggatgggtga agcattagaa gagagggacg
     3061 gcttcgttaa attgttagta aatagggaag acaaaaaaat tctccgatgc catatcttgg
     3121 ggactgatgc atccacattg ctccatgaag ttttagtagc catgagagct ggagatggca
     3181 aaatagatgg cataacaaac catacatata catccagcac tatccgaagt agtttctaaa
     3241 gcagcagaga caatttaaat gaataatctt ttacttggtt agggatctcc ttctatatgt
     3301 tacccattgc agcaacggtt tttactattt ggctattgct cctcattcgc cgcagcgttg
     3361 caactacaa
//
LOCUS       DASPFX010000298         4808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_614472, whole genome shotgun sequence.
ACCESSION   DASPFX010000298 DASPFX010000000
VERSION     DASPFX010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4808
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614472"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..999
                     /gene="truD"
                     /locus_tag="VD694_06495"
     CDS             <1..999
                     /gene="truD"
                     /locus_tag="VD694_06495"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF013322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HXW12392.1"
                     /translation="GTRIRVLGIKDAKAVTMQYATCDSNKYKEGRTRHTTLSLAGYTK
                     YSIKKSHIMGNQFEICITNPSRTDLSDFITEMGNIPNYYGLQRFGSERLVTHLVGREI
                     VRRNFHKAVEIFLCYTTEYDTQFSKEIREKCRDPKNYRLVLKMIPKGMDLERNMLRSL
                     ANGKDYIGALRSIPINIRRLFIHAYQAFIFNKCLSDMMRNGESITKCTKNDFCFRLEN
                     RLTLGKLIRYPGENSTELVPAMHLPGYSFKSTDGRFERKISVLLKEEKLTPKDFYLKE
                     MQELSVEGGFRQLPLMVNDFSYSGNLLVNFKIPVGSYATILLRELMKPTDPTKSGF"
     gene            1115..1750
                     /locus_tag="VD694_06500"
     CDS             1115..1750
                     /locus_tag="VD694_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12393.1"
                     /translation="MLGGRDFHKIIEDGLIKASKDVALEYDTDGIHVSEITRCSRLSY
                     FERVDPFADESSNALQNILRGSITKLLNGKTRPYKIDDLTIYATIDLIVSNDMIVNLI
                     PVPKLPEFPHPNDLLYTNACLFIFESQGGFIVYFTPDGKFVEFSVSESKRMFEQVVRR
                     ARILHLLLKEKKTPVVEPSELCFSCKYYQRCFGQQKESEHMLDILGIGKKK"
     gene            complement(1753..1887)
                     /locus_tag="VD694_06505"
     CDS             complement(1753..1887)
                     /locus_tag="VD694_06505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12394.1"
                     /translation="MSDLIMMYGITAGAFVILTGILFGVRTKRINRLVQELRQEKQSI
                     "
     gene            complement(1934..2530)
                     /locus_tag="VD694_06510"
     CDS             complement(1934..2530)
                     /locus_tag="VD694_06510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12395.1"
                     /translation="MGKKIIATGILVAVIAIVIYFAVSSSNFLTNDVSRLSLANMNFT
                     QGSIFNQDAIRDSIPPELSIKDITANIVDGDKGNFSIIFNVFNPNRGTIMLESISYSV
                     YSNSTRIVSGDIGNRPEGFVDTQDSIFPIIGNGTLILKDKRIIENNNNLNLSQISENN
                     KISEFLVNGSYFFKQTGSFQSTGGEQTFNINYTRPSTP"
     gene            2661..3179
                     /locus_tag="VD694_06515"
     CDS             2661..3179
                     /locus_tag="VD694_06515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12396.1"
                     /translation="MFIGARRAVLIGAIGAIVAFIVLFPAIPDLLRGGSELRDVTVNF
                     KNIVVENTSNVSNTIPLTVTFEILNNDVKALSTSRIEYSIDANNTYLGNGLLSYEDIP
                     PNGRPQLYPNSPTTLESTFLLTRTSSNSEIFNKINNDGFLGNFTEWSINGTAQIDSAF
                     TIYPIPFSSNLG"
     gene            complement(3194..3604)
                     /locus_tag="VD694_06520"
     CDS             complement(3194..3604)
                     /locus_tag="VD694_06520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HXW12397.1"
                     /translation="MYKNKHELFEQVFQAILKSGEDGVFQTEICKEFSLDSRDGSRLA
                     GNLEKQSLISREKILHKGRWTYKLIVKKSAIAEYNRKPIQIECVEGAPCFSCAYQHSC
                     SSEDESSPYSPAKCVWLEEWIVAGFEKGYMKNEK"
     gene            complement(3882..3998)
                     /locus_tag="VD694_06525"
     tRNA            complement(join(3882..3939,3960..3998))
                     /locus_tag="VD694_06525"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3961..3963),aa:Gly,seq:tcc)
     gene            complement(4035..4613)
                     /locus_tag="VD694_06530"
     CDS             complement(4035..4613)
                     /locus_tag="VD694_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12398.1"
                     /translation="MSENRFPSGNVIVLYCNFVKLESNNQLPPHIMERIAVCSRIYER
                     IMKSKPDKSDTMVNIAAGSEEGNIIKNHLLENGVKESNIVVVNSYNNIGHLFSVLMDQ
                     IKKRPNPPVIYFVSSYQQKDIFDKVIEGYKGYKIQFEGAFDKRPNEIVEEDAKKEKLN
                     KKFTNIKEKGKNKMVDMLLNYIFPENKKRQSS"
BASE COUNT         1531 a          854 c          846 g         1577 t
ORIGIN      
        1 ggaacaagaa ttagagttct gggaattaag gatgcaaagg cagttacgat gcaatacgct
       61 acttgtgaca gcaacaagta caaagaaggt agaactagac atactacttt atcactagct
      121 ggatacacaa aatattccat aaagaaatct catattatgg gaaaccaatt tgaaatatgc
      181 atcacaaatc catctagaac tgatctttcg gactttatta ctgaaatggg gaatatacca
      241 aattattatg gactacaacg gttcggtagt gaaagacttg ttactcatct agtcgggaga
      301 gaaattgtca gaaggaattt tcataaagct gtcgaaatat ttttgtgcta tacgacagaa
      361 tacgatactc aatttagtaa ggagataaga gaaaaatgca gagacccaaa aaattatagg
      421 cttgtattga agatgattcc aaaaggaatg gatctggaac gtaatatgtt aagatcactg
      481 gctaacggta aggattacat tggcgcgtta cgatctattc ctataaacat aagacgtttg
      541 ttcattcatg catatcaggc atttatcttt aacaaatgtc tgagtgatat gatgagaaat
      601 ggggaatcaa ttacaaagtg tacaaagaat gatttctgtt tcaggttaga aaacagatta
      661 acattgggaa agctaatccg atatccaggc gaaaacagta cagaattagt acctgcaatg
      721 cacttacctg gttattcatt caaatcaacg gatggtcgat ttgaacgtaa aatatctgtc
      781 ctactaaaag aggagaagct aacaccaaaa gatttctatt tgaaagagat gcaggaattg
      841 agtgtagaag gtggctttag gcaattacca ctaatggtaa atgatttttc ttactcagga
      901 aacctattgg taaatttcaa aatacctgta ggctcatatg caacaatttt gttgcgcgaa
      961 ttgatgaagc ctaccgaccc tacaaaatct ggcttttaac tgaaattttc aaagtaattg
     1021 atgtcagctc tatgcagatt cctgtattaa tggatagaat cgacttaaaa ttattctgtg
     1081 cagtataaat atgacttttt agcattgaga aacgatgctc ggaggcaggg attttcataa
     1141 aatcatagaa gacggactga ttaaggcttc aaaggatgtg gcgttagaat acgacacaga
     1201 tgggatacat gtatctgaaa tcacgcgttg tagtagatta tcctatttcg aaagggtgga
     1261 tccttttgca gatgaatctt ctaatgcact acaaaatata ctcagaggat cgattacaaa
     1321 gttgttaaat ggaaaaacta gaccatacaa gattgatgac cttacaattt acgccactat
     1381 tgatttgata gtttccaatg atatgatagt taatcttatc ccggtcccaa aattaccaga
     1441 atttcctcat ccaaatgatc tactatacac taatgcctgt ttgtttatct tcgaaagcca
     1501 aggtggtttc atagtttact ttactccaga tgggaaattt gtggaattta gtgtgtccga
     1561 aagcaagagg atgtttgaac aagttgtaag gagagctcga attttacatc ttttgcttaa
     1621 ggaaaaaaag actccagttg tagagccaag tgagttgtgc ttttcatgca agtactacca
     1681 aagatgtttt ggacaacaaa aggaatcgga acatatgcta gacatactgg gaattgggaa
     1741 gaaaaaatag ggtcagatag actgtttttc ttgtcttaat tcttgaacaa gtctattgat
     1801 cctttttgtt ctaactccaa acaagattcc agtaagtatt acaaaagcac ctgccgtaat
     1861 tccatacatc atgatcaagt ccgacatatc gccttaggtt tattgcatta acatttaatt
     1921 tttactaaaa aattcacgga gttgatggac gtgtatagtt tatgttgaaa gtttgttcgc
     1981 cgccggtgga ttggaagcta cctgtttgct tgaagaaata acttccatta accagaaatt
     2041 ctgagatctt attattttct gaaatttgag acagatttag attgttattg ttttcgatta
     2101 ttctcttatc ttttagaata agggtgccgt ttccaataat cggaaaaatg ctatcttgag
     2161 tgtctacaaa gccttcgggt ctattgccaa tatctcctga aacaattctt gtagaattag
     2221 agtacacgct gtatgaaata gactcaagca tgattgtgcc cctgtttggg ttgaagacat
     2281 taaagataat tgaaaagttt cctttatcac catccacaat atttgctgtg atatccttga
     2341 ttgataactc aggtggaata gaatctctaa ttgcatcctg attgaaaata ctaccttgtg
     2401 tgaaattcat attggctaga ctcaatcttg aaacatcatt ggttaaaaaa ttggaacttg
     2461 aaactgcaaa ataaataaca attgctatga ccgcaactag gattccagtt gcaataattt
     2521 ttttccccat tgtcctaaag acacctataa tcaaaagatt attttagtct atttgttctt
     2581 tgtaataccg ccttagacat tcttcaatcc aactattcat gtggactaag attatattta
     2641 cgaccaaaca aacccagatc atgtttatcg gggccagaag agccgtccta atcggtgcaa
     2701 ttggtgcgat cgtcgctttt attgtattat tcccagctat tcctgacctg cttaggggag
     2761 gtagcgaatt acgagatgta acagtcaatt ttaaaaatat tgtagtagaa aacacaagta
     2821 acgttagcaa taccattccc ttgacagtaa cttttgagat actcaacaat gatgttaaag
     2881 cattatctac ttctagaata gagtattcaa ttgacgcaaa taatacttat ctaggtaatg
     2941 ggttactttc atatgaagat atacctccaa acggaagacc tcaattatat ccaaactctc
     3001 caacaaccct ggagtcgaca tttttactta cacggacaag ttccaactct gaaatattta
     3061 acaagataaa taatgatggg tttctaggaa atttcacaga atggagtatt aacggaacag
     3121 ctcagataga ctctgcattt acaatatatc cgataccatt cagcagcaat ctaggataac
     3181 aagattagat attctatttt tcgtttttca tgtagccttt ttcaaatcca gccacaatcc
     3241 attcttctaa ccaaacgcac tttgctggac tatatggact tgattcatct tcggaagaac
     3301 aggaatgttg gtaagcacag ctaaagcatg gagctccttc aacacattcg atctgtatgg
     3361 gctttctgtt gtattcggca atggccgatt tctttacgat tagtttgtat gtccatctgc
     3421 ccttgtgtaa tatcttttcg cgtgaaatta aggactgctt ctcgagattt cctgctaacc
     3481 ttgagccatc cctgctatct agtgaaaatt ctttacagat ttcggtttgg aaaactccat
     3541 cttctccact tttcaatatt gcctgaaaaa cctgttcaaa taattcatgc ttatttttat
     3601 acatacttct cggaagatta acaatttgag acaaaagata gatttgtatc aagctaataa
     3661 tataaaaatc ttggcattat ctattcaatt cgtagacaat attgagggat attgacatat
     3721 gccctttgta attagaaatt tctaactttg tatgttgggt ttgggacggc ctcaaatatc
     3781 aaaaacgttt cgtaaattga aaacgatcca aatattgcga cttgcagatt cttatttctg
     3841 aaaattaact aatgacacat ttgaaattcc taaaaaaaga ctgcggtcac cgggatttga
     3901 attcccgctc taattatcta gagtcccggg ttgcgggctt tcttctccat taattggagt
     3961 ggaaggccag tgtcctaacc aaactagacg atgaccgcat atcttttaag cgatgatcat
     4021 ctggatatta aatcttatga agattgtcgt ttcttgtttt ctggaaagat ataattcaag
     4081 agcatatcca ccatcttgtt ttttcctttt tctttgatat tggtgaattt tttgttcagc
     4141 ttttcctttt ttgcatcttc ttcgactatc tcatttggcc tcttgtcaaa cgcaccttca
     4201 aattgaatct tgtaaccttt gtaaccttca atgaccttat caaaaatatc tttttgttga
     4261 taggatgaaa caaagtatat cacaggagga ttaggcctct tctttatttg atccatcaaa
     4321 acagagaata aatgtcctat gttattgtaa gaatttacta caactatatt cgattcttta
     4381 acaccatttt ctaataaatg atttttaatg atattgcctt cctcactgcc tgccgcaata
     4441 ttgaccattg tatcagattt gtcaggcttg gacttcataa ttcgctcata tattctgcta
     4501 caaactgcta ttctctccat aatgtgtgga ggtaattgat tatttgattc tagctttaca
     4561 aaattacaat atagcacgat tacgtttccg gaaggaaatc tattttctga catgatgatt
     4621 tagaataata ctaggaaata aattttttac caacccgact tctttggaga gtttaactgt
     4681 ctttccaatt cacccaatct ttgtatcgca tcctggtttt gcctaatttc agaatagtcg
     4741 acattatttc ttattttgtt catcaattct gctacctcct ccgtggtaac tccatgcttt
     4801 atgtcgta
//
LOCUS       DASPFX010000299         3437 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_353060, whole genome shotgun sequence.
ACCESSION   DASPFX010000299 DASPFX010000000
VERSION     DASPFX010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3437
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353060"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..291)
                     /locus_tag="VD694_06535"
     CDS             complement(16..291)
                     /locus_tag="VD694_06535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12399.1"
                     /translation="MKDAIKRGIVKTVTYGILNSRHGRGYSMNEFVQAGVTDIRIARK
                     NKIPIDPFRTTSYEENIAQLKAFLSQASSKSDSIKQKKVRKSTKKES"
     gene            474..548
                     /locus_tag="VD694_06540"
     tRNA            474..548
                     /locus_tag="VD694_06540"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:509..511,aa:Met,seq:cat)
     gene            618..1271
                     /locus_tag="VD694_06545"
     CDS             618..1271
                     /locus_tag="VD694_06545"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HXW12400.1"
                     /translation="MSITFEILKPVIDFVISFISTLGYPGIFLLSVLESALIPIPSEI
                     IMPFSGFLVSNGTFDPVIVVLAGTFGNLVGSILTYFLGIKVGRAFILKYGKYILFKKS
                     HLEFTEELFQKYGDKISFFCRLLPAIRTYISLPCGIGKTNFVKFSIYTFLGSLIWNTM
                     LTYVGIIFGHNWKNIDKYAIYLDVVSACVISVFVIWFVIKIRKRSRTNQNREIPHRD"
     gene            1356..1871
                     /locus_tag="VD694_06550"
     CDS             1356..1871
                     /locus_tag="VD694_06550"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HXW12401.1"
                     /translation="MNIGIISDTHDDLSSLKNAIKIFNERKVEYVIHAGDYVFPGVVK
                     EFRHLNGKLIGVLGNNDGEKLGLAKNFQEIGGVLHGEFCNLELDNLKIAIYHGTSNEM
                     TEAIISSQLYDLIIHGHTHKKRDDKIRDVLVLNPGCAHRDFPNIDGEIETEPSIIIFD
                     TTKISYQFIRI"
     gene            complement(1933..2325)
                     /locus_tag="VD694_06555"
     CDS             complement(1933..2325)
                     /locus_tag="VD694_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-5A"
                     /protein_id="HXW12402.1"
                     /translation="MSKPMDLGSLKVGSYIIIDSEPCRIVSYDHSKPGKHGSAKARVS
                     AISVFDGSKHSLVSPVSASVDVPLIDKRNGQIISISGQIFQVMDLETFEMFETSSAEE
                     EIREKIVQGAEVEYWKVLERVKIIRIKS"
     gene            complement(2382..2987)
                     /locus_tag="VD694_06560"
     CDS             complement(2382..2987)
                     /locus_tag="VD694_06560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12403.1"
                     /translation="MSDTSIAPCGYICYPRDNNAQNLIEYWKNSEVVKDLYFATATFA
                     FESKPYFPNNSNHYILVKYAGLDNLAEGISKYQRPNSSLFLFNNETELFEKYHEKVSY
                     VSMYYTRYDQDNHELRDIAGILARRDLVVSANLGNLKFMNNKKLPFIFPHADNIIILE
                     VDGKKSHQSDQNYCEKTRKDVARKGIPLTNLVSFSILEKLR"
     gene            complement(3092..>3437)
                     /locus_tag="VD694_06565"
     CDS             complement(3092..>3437)
                     /locus_tag="VD694_06565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12404.1"
                     /translation="IAIDLYIQDKVLEMGYDVVFNPNAIVLFKPAKTFVDFVSQVVRA
                     VNGHSQLKKIGCCMENRLRLKTALMEFFRIASRHPLGALCTCICYIMIPFYMKRIKNA
                     DSALWHTAQSTK"
BASE COUNT         1083 a          606 c          577 g         1171 t
ORIGIN      
        1 ctttcaagat aatattcaag attctttctt tgtgcttttt ctaacctttt tttgttttat
       61 gctatcagac tttgaggatg cttggcttaa gaaagccttg agttgcgcaa tgttttcctc
      121 atatgaggtt gtcctaaatg gatcaatggg aatcttattt tttcgtgcaa tccgaatatc
      181 cgttacccct gcttgtacga attcattcat agaataaccc cttccatgtc gtgaatttag
      241 tattccatag gttacagtct tgacgatccc acgcttgata gcatccttca tagtcaacga
      301 aaactaaaga tctaaattaa aaggtttctt gaagagatga cctttttctg aagtaaacct
      361 attttggaat gtccagtatc aggttttatg acaaaagatg caatatcgaa tgaaaaatgc
      421 tttgaataaa atatattatg tttcaaaaaa tcattctgct caaggagctg agcgccgggg
      481 tagctcagct tggtcagagc gttcgactca taatcgaaag gccgcgggct caagtcccgc
      541 ctccggcacg taataattaa ttgagcacct tgcgaaaaat aaagagatat ttatgccatt
      601 aattttttaa ttattaattg tcaatcacgt tcgaaattct aaaaccagtt atagattttg
      661 taatttcatt catatcgact ttaggatatc caggtatttt tttactaagt gttttagaaa
      721 gtgcactcat tccaatccca agcgaaataa tcatgccatt ttctggtttt ctggttagta
      781 atggaacatt tgatcctgtt atcgtagtgc ttgcaggcac atttgggaac ctcgtaggtt
      841 caattcttac atatttcttg gggataaagg ttggaagggc attcatacta aaatatggaa
      901 agtatatttt gtttaagaaa agccaccttg aatttaccga agaattgttc caaaaatatg
      961 gtgacaagat ttcattcttt tgcaggttat taccggcaat ccgaacatat atttccctac
     1021 catgcggcat cggtaagact aattttgtta aattttcaat ttatacattt ctaggatcac
     1081 ttatctggaa tactatgtta acatatgttg gtatcatatt tggacataat tggaaaaata
     1141 tagacaaata cgcaatatat ctcgatgtgg tatccgcatg tgttatttct gtattcgtca
     1201 tctggttcgt aatcaagatt agaaaacgat ccagaactaa tcagaataga gaaatccctc
     1261 acagggatta ggataaattc atttgtattt ttgaaaacta gattatttca aatcgattcc
     1321 tttatttgca ataaatgacg tcatcaacat gatttatgaa tataggaata atatctgata
     1381 ctcatgatga cctctcaagt cttaaaaatg ccataaagat attcaatgaa agaaaagtcg
     1441 aatatgtgat tcatgctggc gattatgttt tcccaggagt agtaaaggaa ttcaggcatc
     1501 taaatggcaa attaataggt gtacttggaa acaatgatgg tgaaaaattg ggattggcaa
     1561 aaaattttca agaaattggc ggagtactgc atggagaatt ttgtaaccta gaattagata
     1621 atctcaaaat tgcaatatat catggaacca gcaatgagat gacagaagct attatttcaa
     1681 gtcaactcta cgatttgatt attcatggac acacgcataa aaaacgagat gacaagatac
     1741 gagacgtact ggtgctaaat ccgggctgtg cacatagaga ctttccaaat attgatggag
     1801 aaattgaaac agagccatca atcatcatat ttgatactac aaaaatttct tatcaattta
     1861 ttagaatatg actttaataa tgatatctta attggtaatc ttcttacttg aaaatcaaga
     1921 atacttcttg ttctagcttt ttattctgat tatttttact ctttcaagaa ctttccaata
     1981 ttcaacttca gcaccttgca caattttttc tcgtatttcc tcttctgccg aagaagtttc
     2041 aaacatttcg aaagtttcca aatccattac ttggaagatt tgtccggata ttgagattat
     2101 ttgaccattt ctcttgtcta ttagtggaac atcgacacta gcagaaacag gtgaaactag
     2161 actgtgtttt gacccgtcga atacagagat tgcagagact ctcgcttttg ccgagccatg
     2221 ttttccaggc ttactatgat cgtatgacac aatcctgcat ggttcgctat caataattat
     2281 gtaggaacct acttttaggc tccccaaatc catcggtttg ctcaatattg gtcgaaaaag
     2341 taaaaaattg cttcatattt aacggttctg atcggaccgt tctatcttaa tttctctaaa
     2401 atagagaagc ttacaagatt agtgagagga atcccttttc ttgcaacatc ctttcttgtt
     2461 ttttcgcaat aattctgatc actttgatga ctcttttttc cgtcaacttc caagattatg
     2521 atattgtctg catgtggaaa aataaatggc aactttttgt tattcatgaa tttcagattt
     2581 cccaaattag cactcacgac cagatctctc ctcgccaaaa ttcctgcgat atctctcaat
     2641 tcatgattat cttgatcgta tcttgtatag tacattgaga cataactgac cttctcgtgg
     2701 tatttttcaa ataattctgt ttcattattg aagagaaaaa gagaactatt tgggcgctga
     2761 tattttgaaa ttccttcagc aagattatca aggccagcat acttcacaag aatataatga
     2821 tttgagttat taggaaaata cggcttgctt tcaaatgcaa atgttgccgt agcaaaatac
     2881 aagtctttta caacttcaga attcttccag tactctatca aattttgagc attgttatct
     2941 ctaggatagc atatgtatcc gcaaggtgca attgaagtat cactcaattc tacaatcgta
     3001 attgaagagg aatatttata ccatttttta tttgattata aagctcacaa ttttaatgaa
     3061 atattagaga ttctaaattt ttctgttaat ctcattttgt gctttgagca gtatgccaaa
     3121 gtgctgagtc ggcgtttttg attctcttca tatagaacgg aatcatgata tagcaaatac
     3181 aagtacaaag cgcccctaaa gggtgtctac ttgcaatgcg aaaaaattcc attagggcag
     3241 ttttcaatct aagcctattt tccatacaac atccaatttt ttttagctga ctatgaccat
     3301 tcactgccct aacaacctgg gatacaaaat ctacaaatgt ctttgctggc ttgaatagaa
     3361 ctattgcatt aggattgaat actacatcat atcccatttc caatactttg tcttgaatgt
     3421 agagatcaat agcaatg
//
LOCUS       DASPFX010000300         4534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1634691, whole genome shotgun sequence.
ACCESSION   DASPFX010000300 DASPFX010000000
VERSION     DASPFX010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4534
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1634691"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..836
                     /locus_tag="VD694_06570"
     CDS             <1..836
                     /locus_tag="VD694_06570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12405.1"
                     /translation="QFVIPPTPLPIPEGERRMDEFGTLQIYPTVPDGGEWFINMQDPF
                     DDEIANFNSDIALEKQSDDSWRVNNSEVRMRVGTLPGQEEWKNVEMTGYVRMISPTPA
                     TESSESSGQDEGSEDGDSLDPHLTWRARGGRHNDMVTCEGTALNGGLYLDGRVSWKKE
                     IWHTGGYSDARGVSEIPNSLINKWIGWKTVMYNLDDDSSVKMESYLDINADNRWEKVS
                     DVKDNGKWYADTSDEEFYSADCGKEKDYIITNSGPTATFRADNLIFDFKNLSIREIKA
                     P"
     gene            complement(963..1166)
                     /locus_tag="VD694_06575"
     CDS             complement(963..1166)
                     /locus_tag="VD694_06575"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HXW12406.1"
                     /translation="MTQYGATLKNVVDEVLFVTNMDAAFAAAVKCRQEIFSGAPVVAS
                     TIIQIQRLAFPDLMIEIKCVAKL"
     gene            complement(1163..1357)
                     /locus_tag="VD694_06580"
     CDS             complement(1163..1357)
                     /locus_tag="VD694_06580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12407.1"
                     /translation="MTISKETKSFGMPWEKEYGYAQAVKVGDIIYVSGQVSHDDKGNI
                     VGRGKWKLRCVRRTKIFRNY"
     gene            complement(1832..2668)
                     /locus_tag="VD694_06585"
     CDS             complement(1832..2668)
                     /locus_tag="VD694_06585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12408.1"
                     /translation="MIDRIAENTVNQTMPSSPSLSTPNISYPIHQKPFSCPGEDIFGI
                     GGYVCPDCYLIKPIIYPYKIVSNGPLIQSQVYPMRACRDFGSSQERIEYLNYNEINGF
                     PTALQTWVRKIWSNGKKMKLRSLQIQASIGSSCEQDLLNETTHNANDDLNNNVGNPQF
                     SNRKNMLKVTVEQDGLSAVKKSIILDYDESNMILLAAVLSISSHPSIRSGVSNASILK
                     AIEASEQLIESEGELLSYLSYTKFKTFGFFSIENESYLVMLVPEECSLSRSYSCQLIG
                     TS"
     gene            complement(3399..4331)
                     /locus_tag="VD694_06590"
     CDS             complement(3399..4331)
                     /locus_tag="VD694_06590"
                     /inference="COORDINATES: protein motif:HMM:NF015126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HXW12409.1"
                     /translation="MESINFVCLGQTEFVKELGKKGQSSDVTTYDKKKDDRIMTYVIP
                     SGYPEKIQPLITAVNLAEYSIVNVNKLDRYLGEQIVALDLLHLDKGFLLHSYEVDNEN
                     LKSLLKNTVASSFKVEHNIESLKESINSLSSVKRDGPPIIHIDNIFNVKGVGVVVLGI
                     LKQGAIKVHDELILFPQKKSVTIKSIQMHDKNVEESYSPARVGLALTGVSYDEITRGD
                     ILSNFSHFTSADQELIMNFDKVPFYKNDLSENHLYLLSIGTQIKPVKIKKLENDKLKI
                     ISEKLFSFRARDIAILLNPDSKDIRIVGSGNIYV"
BASE COUNT         1411 a          838 c          819 g         1466 t
ORIGIN      
        1 tacaatttgt tattcctcct actccccttc caattccaga gggtgagaga agaatggatg
       61 aattcggtac cctccagatt tatccgacag taccggatgg gggagagtgg tttatcaaca
      121 tgcaggatcc tttcgatgac gagatagcta atttcaattc agatattgct ctagagaaac
      181 agtcagatga ttcatggaga gttaataatt cagaggtgag aatgcgcgta ggtacgcttc
      241 cggggcaaga agaatggaag aatgtggaaa tgacaggata cgtgagaatg atatctccca
      301 ctccagcaac agaatcaagt gaatcctccg gtcaagatga gggaagcgaa gatggagatt
      361 cattagatcc tcatctgaca tggcgtgcaa gaggaggacg ccataatgat atggtcacgt
      421 gtgagggaac agccttaaat ggcggtttgt accttgatgg tagggtatct tggaaaaaag
      481 aaatatggca tactggagga tattcagatg cacgtggtgt ttcagagatt ccaaactctt
      541 taataaataa atggatcgga tggaaaaccg tcatgtataa tcttgatgat gattcatccg
      601 tgaagatgga atcatatttg gatattaacg ccgacaacag atgggaaaaa gtatctgatg
      661 ttaaagataa tggcaaatgg tatgcagata catctgacga agagttttat agtgcagatt
      721 gcggtaaaga aaaagactat ataattacca attctggacc tactgcaact tttagagcag
      781 ataatttaat tttcgacttc aagaatctta gcataagaga aatcaaggca ccctaaatgg
      841 gggtattggt ggagggtatc atgattccag catactgatt aaactaacgt ataagtcata
      901 tgcatcagct aatatttctt cagtgcatgc cgcagcggca acaattcaag aagagttaag
      961 ttctaaagct tcgctacgca tttaatctct atcataaggt cagggaatgc aagacgctga
     1021 atttgtatga tcgtacttgc aactacagga gctccagaaa aaatttcttg tctacattta
     1081 accgccgctg cgaaggctgc atccatatta gtcacaaaga gtacctcatc aaccacgttt
     1141 ttcagtgtag ccccatactg cgtcaatagt ttctgaatat tttcgtacgc ctgacgcatc
     1201 tgagtttcca tttcccccgg cctactatat ttcctttgtc atcatgacta acctgacctg
     1261 acacataaat aatatctcca acttttaccg cctgtgcata accatattct ttttcccaag
     1321 gcatcccaaa actcttcgtc tccttgctaa ttgtcataac atttttcttc tccttgactt
     1381 ggtcttagaa ctccccaata cttaagttaa tcaggatgaa tggccttgtc caataagatt
     1441 actatgttat cacatcatgc aaaattcgta attcaaatca tagtactact cataaggcta
     1501 tttggaaact tagtgaatga agcaattgtt ttgttatgga gagtcattta tttccctaaa
     1561 tcaaattgcc tatcttcatg atgatagcac ccaattttgg aagatgatac tcattagctt
     1621 gctaaatact ggtatttcat tagccttaga gaaatagttt tgacaatgat aacactcata
     1681 tgaatattac atagtacaga agtgacaaga ctattctata tgttaggaaa agtagctgcg
     1741 cattatatcc agatccaaga tgtgatgtgg aaagaaaata ctccgttact aactacttga
     1801 tgttattaac caaggcctcg tatcatttta attaagaggt accaattaat tgacagctgt
     1861 aacttctgct taaagaacat tcctctggga caagcatcac taaataggat tcattttcta
     1921 tactgaaaaa accaaatgtt ttaaatttag tataactaag ataagacaat agttcgcctt
     1981 ccgattcaat taattgttct gacgcttcta tggccttcaa tattgaagca tttgagactc
     2041 cggatcgaat agacggatga ctgcttatgg acaaaactgc agccaatagg atcatattag
     2101 attcatcata atcaagtatg atcgatttct tgactgcaga caaaccatct tgttcaaccg
     2161 ttacctttag catatttttt cgatttgaaa attgtggatt tccaacatta ttgttgagat
     2221 catcatttgc attatgtgtt gtctcattaa ggagatcttg ttcgcaactt gatcctatcg
     2281 acgcttggat ctgaagtgac ctcaatttca ttttctttcc attggaccaa atttttctaa
     2341 cccaggtctg aagtgctgtc ggaaaaccgt taatttcgtt gtagttcaaa tattcaatcc
     2401 gttcttgaga tgatccaaaa tctcggcatg ctcgcattgg atagacctgc gattgaataa
     2461 gaggaccatt ggatacaatt ttgtatgggt aaataatagg ttttattaaa taacaatctg
     2521 gacagacata accacctata ccgaagatat cttctccagg gcagctaaat ggcttctggt
     2581 gaattggata agaaatattc ggagtggaca aagacggcga agatggcatt gtttggttta
     2641 ccgtattttc ggcaatccta tctatcattt tttcttcgac tttcttctga attctatcaa
     2701 aaaacgatct ttcgtttgtt agtcttcaag atttagaaca ttataaggag ctcttgtcct
     2761 caacggatta gaatcaattg aatacggtcc agacgccaga ccagcgagat attcttcgac
     2821 tcgaagtcat caatcagtta cagtattgac agtaatgcca atagggatat gtggctcaag
     2881 aaactgctcg aatcagcatc ggctcttgat aattatgagg aacctaatga gaatgagaac
     2941 gatctgaggc attttgtctc ctgacttgac aggattaaga atcatgcatg cctatcttta
     3001 cctacattgc cagctaagaa tacggaacga tatgaaaaaa gctgaagaac gactgtgaag
     3061 tgagttttac tatgcttgct tgctgaaaca agatctgata cttagaaaat tctaagtatt
     3121 aatagaaaaa aatctaggtc cctataaata tgtacatata caaggcatgg agcgtatatc
     3181 tattgattga ttcaatgatt ttattcagca ttactttcag caactaaatc cttatctaag
     3241 aagttaagtt tttacatgtt gtattgtatc aatatctttt ttgaatcaat ttgtattgag
     3301 aataacttac ataattatcg gattcatatt gcttactgaa cgtcttgatg acttaatact
     3361 atcagcttac ttcattgcga ttaagataga ctgacaattt atacatatat atttcctgaa
     3421 cctactattc gtatatcttt actatctgga tttagaagaa tggcaatatc tctggctcta
     3481 aatgaaaata gcttctcaga tattatcttt agtttatcat tctctaattt ctttatcttc
     3541 acaggtttga tttgtgtccc aatggacaaa agatacaagt gattttctga aagatcattc
     3601 ttataaaatg gaaccttatc aaaattcata atcaattcct gatccgcaga agtaaaatga
     3661 ctgaaattag atagaatatc acctctagtt atctcgtcat aagaaacacc tgttagagca
     3721 agacctactc tagctggact atatgattct tcgacatttt tatcatgcat ctgtatactt
     3781 ttgattgtaa cacttttctt ttgaggaaat agtattagtt catcatgaac cttgatggcg
     3841 ccctgtttaa gtatgcctag tacgaccaca ccgactcctt ttacgttaaa tatattatct
     3901 atatggataa ttggtggtcc gtctctcttt accgaagata aagaattgat actttcttta
     3961 agactctcga tattatgttc aactttgaat gatgacgcaa cggtattttt tagaagactc
     4021 ttaagattct cattatcgac ttcgtaagaa tgtaagagaa accctttgtc taggtgcagc
     4081 agatctaagg ctactatttg ttctcctaga tacctatcaa gtttgttaac gtttactatg
     4141 gaatattctg ccaaatttac tgcagtaatt aatggttgaa tcttctctgg atagcctgac
     4201 ggtattacat aagtcatgat cctatcatct tttttcttgt catacgtcgt tacatcactt
     4261 gattgtcctt tttttcctaa ttccttcaca aattctgttt gaccaagaca gacaaaattg
     4321 atactctcca catgtgttct tataagatgt ctttaaaatt tattcctaag tcagccaatt
     4381 ggccaattag ttgaataggt gttatgctat aatttttacc taacgcctac attacctcga
     4441 tttgaatttc atacaagctt caatattctt attctctcag ccaaataaca ctctgcatat
     4501 aagggcggaa aagctttgga tggggaggag acca
//
LOCUS       DASPFX010000301         2040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_874116, whole genome shotgun sequence.
ACCESSION   DASPFX010000301 DASPFX010000000
VERSION     DASPFX010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_874116"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..531)
                     /locus_tag="VD694_06595"
     CDS             complement(142..531)
                     /locus_tag="VD694_06595"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12410.1"
                     /translation="MTIKNKIVSIVDDESSTANLFYNALKAINGIKIFKFTDPIKALE
                     HLKMNKEDYAAMISDLRMPVINGVQLLKTVKDLNPITRTILITAYYLDDNLLQEYIKK
                     EIINSFIQKPIGVDQLRLLVSNQICSV"
     gene            829..1233
                     /locus_tag="VD694_06600"
     CDS             829..1233
                     /locus_tag="VD694_06600"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12411.1"
                     /translation="MSNSKRFVSVVDDDIYITKLFHEALRQNINEVTVFAFTDPIMAF
                     EHFTENKENFVLVISDLRMPGLNGLELLKKIKDSNAKVRTILMSAYNFEEEELYHKYM
                     RNEVINSTIEKPVTMNRLYQRVREQLNAYQKG"
     gene            complement(1308..1661)
                     /locus_tag="VD694_06605"
     CDS             complement(1308..1661)
                     /locus_tag="VD694_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12412.1"
                     /translation="MTNYCLVLPYIKGGIEVAKKFAVDHCGHDNEHDEFYKIAGISRE
                     NVWIQHSPPGSGSPDLEIISIETNDPDVMLKQLATSNHPWAVRFREYAMKAYGLDFSG
                     PLPPLNEHIINWEEK"
     gene            complement(1722..>2040)
                     /locus_tag="VD694_06610"
     CDS             complement(1722..>2040)
                     /locus_tag="VD694_06610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12413.1"
                     /translation="VIGMHATLDGNNIPSLESYRVQSGLFNFTLPENNILNLTSQTTQ
                     SVSDGNWLFLKPLPPGTHELIVKGDINSTKISSTFHGYEFAGPVGWNQTTTYIINVGY
                     IPM"
BASE COUNT          641 a          329 c          384 g          686 t
ORIGIN      
        1 ataatgcatg ttttctagat agtaaatatc tcatggatgg attgaatttg tttacaaggt
       61 gaaatctcgg atcctatttt taatgggccg gaagggaccg atctggaatt tcagatgggt
      121 cggaattaga aattctagcc cttatacaga acaaatttgg ttactgacta gtaaacgtaa
      181 ttgatcaacg cctattggtt tttgtataaa actgtttatt atctcttttt tgatatattc
      241 ttgaagcagg ttgtcatcaa gataataggc tgttatcagg attgttctag ttatgggatt
      301 caaatccttt actgtcttta ataactgcac tccatttatt acaggcattc gtaaatcaga
      361 tatcatggct gcataatcct ctttgttcat tttcaggtgt tctaatgctt taattggatc
      421 tgtaaacttg aatatcttga taccgttgat cgcttttaaa gcgttataga acaaattggc
      481 cgtagatgat tcgtcatcaa ctatgctaac gattttattc ttaatggtca tcttagaaac
      541 acttgttacg acttgtctat attattaggg aattcaagtt tttatctgtt ttgttgttcc
      601 tacgataagt taccgtttga tttgttttta acttctcatt gatcacttga attttatttc
      661 tagagtctga aaacaaaatt tgctagttac gaatagtcct cgagactaca tgatactact
      721 gcaatatatg aaaaaatgag aatcgctaaa aacttatcta gatgaatggt caatatattt
      781 attacaattt gattcatctg atttcaagac atcatcggag aattcgaatt gtctaacagc
      841 aagagatttg ttagcgtagt agatgatgac atctatatca ccaaactttt tcatgaggct
      901 ttgcggcaaa atattaatga agtcacggtt tttgctttca ctgatcccat tatggctttt
      961 gaacacttta cggagaacaa ggagaatttt gtcttagtta tttcggatct aagaatgcca
     1021 ggtctaaatg gtttagagtt actcaaaaaa ataaaggatt caaatgccaa agttagaaca
     1081 atattgatga gtgcttataa ttttgaggaa gaagaattat accacaaata catgagaaat
     1141 gaggtgataa actcaactat agaaaaacca gttaccatga acaggctata ccaaagagta
     1201 agagaacagt tgaatgccta tcaaaaagga tgagcgggaa atgacataac taataggaag
     1261 ggatgaatcc tggagtttca gattcattaa cttgtagaaa gtgtggatta tttttcctcc
     1321 cagtttatga tatgttcgtt aagtgggggc aaaggaccag aaaaatccaa gccatatgct
     1381 ttcattgcat attcacgaaa ccttacagcc catgggtgat ttgatgttgc caattgtttg
     1441 agcataacat ccggatcgtt agtttcaatg ctaataattt caagatccgg agaaccgcta
     1501 ccgggtggac tatgttggat ccagacattt tctcgggaaa ttccagcaat tttgtagaat
     1561 tcatcatgtt cgttgtcatg accacaatgg tcaaccgcaa attttttcgc aacttctatg
     1621 cctcctttaa tatatggtaa caccaaacaa taatttgtca taagtaaaca tgagatgtta
     1681 attatttaaa cgattttcct catttatggt agataaatca actacattgg gatatacccg
     1741 acatttataa tataagtggt ggtctgattc catccaacgg gtcccgcaaa ttcatatccg
     1801 tgaaacgtgg acgatatttt tgtactgttg atatctccct ttacaattag ttcatgagtg
     1861 cctggaggta atggttttag gaataaccaa tttccatcag aaacagactg tgtagtctga
     1921 gaggtcaagt tcaatatgtt gttttcaggc aatgtaaaat tgaagagtcc agattggaca
     1981 cggtatgatt ctagactagg gatattgtta ccatctaatg tggcatgcat tccaatgaca
//
LOCUS       DASPFX010000302         2588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1292335, whole genome shotgun sequence.
ACCESSION   DASPFX010000302 DASPFX010000000
VERSION     DASPFX010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1292335"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1190
                     /gene="rpe"
                     /locus_tag="VD694_06615"
     CDS             <1..1190
                     /gene="rpe"
                     /locus_tag="VD694_06615"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF004076.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HXW12414.1"
                     /translation="YTLIGDGESNEGQIWEAAMAASKFKLDNLVAILDRNKIQQDGFT
                     EEIMPLDPVRDKWAAFNWNVVEVNGHKIEQIIDALSRVEKVEDKPSIIIANTTKGKGI
                     KHMANNPQWHGKAPPKKHVPILLEELQSEILIAPSIIAGEPENYEEKVRRAERAGADL
                     IHLDIMDGKFVPTTSFFADTIKHLRKISSIPFDAHLMIEKPINHVEEYIDAGCDIITV
                     HVEACSEAEFVEINKMILKAGISPGIAINPGTQFPSWLIEHLENIDIMIVMSVNPGFA
                     GQKFIPDSLDKMAEIVKTLKSNNYKGFIEADGGIDANTLQQVFDAGARIMVAGNAVYG
                     SPDINSNIIQLRHKANVAIETKLLELATINDMRSDWIKSRKNMLIPLAKELGIEEDLH
                     AIK"
     gene            1177..2151
                     /locus_tag="VD694_06620"
     CDS             1177..2151
                     /locus_tag="VD694_06620"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HXW12415.1"
                     /translation="MQLSDKNIISDMRTAYGKTLVELGLKDQNIICVGADTTDSLKTK
                     LFGDKFPNRLYNVGIAEANLVSIAAGLSIAGKVVFASTYAAFLPGRCLDQIRNAICYP
                     FLNVKLVVSHAGLTVGPDGASHQQIEDISTMRSIPNMRVLVPSDSVAVKNLIPLLSYT
                     PGPFFMRLARPSNSNIYDDNFEQFDIGKGNIIRDGSDITLISCGLMVSKAIDAALTLE
                     KEYGVSCRVIDMYSIKPIDVELIYHAAVDTGAIVTIEEHSIIGGLGSAVCEVTGENHP
                     VPVNRMGVGDTFGESARETEIESLLSKYGLSSDQIIESVLKTRKRIKK"
     gene            2148..>2588
                     /locus_tag="VD694_06625"
     CDS             2148..>2588
                     /locus_tag="VD694_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase family protein"
                     /protein_id="HXW12416.1"
                     /translation="MKIFLDTASIESIKKFVDMGIVDGITTNPTLISREKGHPEDIMR
                     GIVKIVKGPVNLEVVATNSEEMIEEGLRLKKFGENVIVKVPMTSDGLKAVRKLAENKI
                     KTNVTLIFSSNQALLAAKAGASYVSPFIGRLDDAGQEGMTVIKEI"
BASE COUNT          866 a          422 c          580 g          720 t
ORIGIN      
        1 tttatacttt gataggtgat ggggaatcaa atgaaggaca aatttgggaa gctgcaatgg
       61 ccgcctcaaa attcaaactc gataacttgg tagctattct tgataggaac aaaattcagc
      121 aggatggatt tacagaagag ataatgccct tggatcctgt tagagataag tgggcggcat
      181 ttaattggaa cgtagttgag gtaaacggac ataaaattga gcagataata gatgccttga
      241 gcagagttga aaaagtagag gataaacctt caataataat cgcaaatacg accaaaggaa
      301 aaggaattaa gcatatggct aacaatcctc aatggcacgg aaaagcacct ccaaaaaaac
      361 acgttccgat tttactggaa gaactacaaa gcgagatcct gattgcacca tcaattattg
      421 caggtgaacc agagaattat gaagaaaagg taagaagagc tgagcgtgca ggtgcagatc
      481 ttattcactt ggatataatg gatggtaaat ttgtaccgac gacttcattt tttgccgata
      541 ctatcaaaca cctgagaaaa atctccagta ttccttttga cgcacacttg atgattgaga
      601 aaccaatcaa tcatgtcgaa gagtacatag atgcagggtg tgatattatc acagttcatg
      661 ttgaggcttg tagtgaagca gagtttgttg agatcaataa aatgatactt aaagcaggaa
      721 tcagtcctgg tattgcgata aatccgggaa ctcaatttcc gtcttggtta attgaacatc
      781 ttgaaaacat agatatcatg atagtaatgt cagtgaatcc tggtttcgca ggccaaaaat
      841 ttatccctga ttctttagat aagatggctg aaatagtcaa gacattgaaa agtaacaact
      901 ataagggatt tattgaagct gatgggggta ttgatgcaaa tacccttcag caggtttttg
      961 acgccggtgc cagaattatg gtagcaggca atgcggtata tggttcccct gatatcaatt
     1021 ccaatattat ccagctgaga cataaggcca atgttgcaat tgaaacaaag ttgttggaat
     1081 tggctacaat caatgacatg agatctgatt ggatcaagtc tcgcaagaac atgcttatac
     1141 ctttagcaaa ggaacttggc atagaggagg atctccatgc aattaagtga caaaaacatt
     1201 atttccgata tgagaacagc gtacggaaaa acgttggtgg aactaggcct aaaggaccaa
     1261 aacattattt gcgtcggagc cgatactact gattcattaa aaacaaaatt gtttggcgac
     1321 aagttcccaa acagacttta caatgttggg attgcggagg caaatcttgt ttctatagca
     1381 gctggattat ctattgcggg taaagttgtt tttgctagta cctacgctgc ttttttgcca
     1441 ggaagatgcc ttgaccagat taggaatgca atttgttatc cctttcttaa tgtaaaacta
     1501 gtagtatcac atgctgggct tacggttggt ccggatggtg cttcacatca acaaatagag
     1561 gacatttcta ctatgcgatc aattcctaac atgcgagtac ttgttccatc agattctgta
     1621 gccgtaaaga atttgattcc cttattgagt tatactccag ggccattttt catgcgatta
     1681 gcccgtcctt caaattccaa tatttatgat gataattttg aacaattcga tatcggtaaa
     1741 gggaacatta ttagagatgg ttcggacatt acactgatat cttgtggtct aatggtttca
     1801 aaagcgattg atgcagcatt aacacttgaa aaagaatacg gagtctcatg cagagtgata
     1861 gatatgtatt ctatcaagcc aatcgatgtt gagttgatat atcatgcagc agtagatact
     1921 ggcgcgattg ttactattga agagcatagt attataggag gactgggaag cgctgtctgt
     1981 gaggtcaccg gcgaaaatca tccagtcccc gtaaatagaa tgggtgtggg cgatactttt
     2041 ggagaatctg ccagagagac tgagatagaa tctctattaa gcaaatatgg tttgagttct
     2101 gatcaaataa tagaatctgt tcttaaaaca aggaaaagaa taaagaaatg aaaatttttc
     2161 ttgatactgc aagtatcgaa tccataaaga aatttgtcga tatgggtatt gtagatggaa
     2221 tcaccaccaa tcctacgttg atttctaggg agaaaggaca tcccgaagac attatgcggg
     2281 gaatagtaaa aattgtgaaa ggtcctgtca acttggaagt tgttgcaaca aatagtgagg
     2341 aaatgattga ggagggttta agattaaaaa aatttggcga aaatgttatt gtaaaggtcc
     2401 ccatgaccag cgatggacta aaggcagtaa gaaaactggc tgagaataaa ataaagacaa
     2461 atgtaacctt gattttttca tcaaatcaag cactattggc ggcaaaagcc ggagcatcat
     2521 atgttagtcc attcattgga agactcgatg atgctggtca agaaggaatg acagtgatta
     2581 aggaaatt
//
LOCUS       DASPFX010000303         3402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2063569, whole genome shotgun sequence.
ACCESSION   DASPFX010000303 DASPFX010000000
VERSION     DASPFX010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2063569"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..250)
                     /locus_tag="VD694_06630"
     CDS             complement(<1..250)
                     /locus_tag="VD694_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HXW12417.1"
                     /translation="MEKIFTEASEKEITRTIAQMFNETMMEYSDCDVIIIGAGPAGLM
                     AGRELCNNGVKTLIIEQNNYIGGGFWVGGYMMNPVTVRY"
     gene            360..665
                     /locus_tag="VD694_06635"
     CDS             360..665
                     /locus_tag="VD694_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW12418.1"
                     /translation="MSDPTARRLLWYLFAGSKGGENRIKIINLLQDTPLNINRMAEVL
                     DLDYKAVQHHVDVLEKNNLVSRMGEKYGIMYFVSNYLESNMDTFNEIMTKINKSKTN"
     gene            complement(731..1834)
                     /locus_tag="VD694_06640"
     CDS             complement(731..1834)
                     /locus_tag="VD694_06640"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HXW12419.1"
                     /translation="MSRFFRAKDKEDNSKSEVHKDTDHLDFQVRDLYKKGVNYMSNDK
                     LSDAIRSFELALRLDPNYVEAWIKKGYAHFHLRDYSFAISSYDMALNIDPDNHEAWNL
                     KGLAYYKMNNYTKAIECCTKALDANPSDGLVWYNYACYLTLDGKVDDGMEALKRAIEI
                     DISHAKKAVRDKDFENARAEEGFMRIIEVVVLESLRQGYDYVGKIVWATGMDRLDVEE
                     AVMRLSMKGLVTIKQKKSITGKEEYYELSRDISDKLGEVKRSGFLKPKEYSAPIQEIK
                     DIIEILDKSIESVKNGDMNQTLDSFEQLTNPSKHGNTMIEQFFDQHRDLRLYQARLSD
                     KGQEYLDSHKSELTSLLEDIIEKVRSGPLSRTI"
     gene            2583..>3402
                     /locus_tag="VD694_06645"
     CDS             2583..>3402
                     /locus_tag="VD694_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HXW12420.1"
                     /translation="MFRKNLTIFMLVGILTTITVTSTYLMNASAYKPDDPAAKYNCFM
                     TDANGNYNLTAEGDLIPCEFDTGDHAWMLTSSALVLVMTPAGLAIFYAGLSRQKNAVN
                     TLHMVFLTTGLVAVQFALWGYSLAFGPDAGGYGFIGTLDWAGLNNVIHDAPSLAYATT
                     IPHNTFMVFQMMFAIITPALIVASVAERMKFSAFIIFVILWATFVYDFAAHWTWSVSA
                     PDNYGMNPGYSGFGWTGAFGSLDFAGGTVIHITSGWAGLVVALMLGRRIGYGKVP"
BASE COUNT         1001 a          643 c          599 g         1159 t
ORIGIN      
        1 gatacctgac tgttaccgga ttcatcatgt atcctccaac ccaaaatcct cctccgatgt
       61 agttattttg ctcaattatt agagttttaa caccgttgtt gcataattct cgtcccgcca
      121 tcaatcctgc aggaccggcg ccaatgatta ttacgtcgca atcactatat tccatcatag
      181 tttcattgaa catttgtgca atggttcgcg ttatctcttt ttcacttgct tccgtgaaaa
      241 ttttttccat ggtcaattaa cgctctatct tgtattaata ttatgtgtat tcttagtttt
      301 agtttgggcc tggaccataa attcaaattt taattaaaag agtattgtga gtacattcaa
      361 tgtccgatcc tacagctagg cgactgcttt ggtatctatt tgcgggttca aaggggggcg
      421 aaaataggat caagataata aatttactcc aagatactcc actcaacata aatcggatgg
      481 ctgaggtttt ggatcttgat tataaagctg ttcagcacca cgtggacgta ttggaaaaaa
      541 ataatttggt ttcccgtatg ggtgaaaaat atggaataat gtattttgtt tcaaactatc
      601 tagagtcaaa tatggatacg tttaacgaaa taatgacaaa aattaacaaa tcaaaaacaa
      661 attagaatat tgacgcagta tttcacatgt gattttctaa ataaaacaat gaaggtaaat
      721 ttttctaatt ctaaattgtt ctggataagg gaccacttct taccttttca ataatatcct
      781 ctaacagact ggtcaattcc gacttgtgtg aatccaaata ttcttgaccc ttatctgata
      841 gtcttgcctg ataaagtctc aaatcacgat gctgatcaaa aaattgctca atcattgtat
      901 ttccgtgttt ggatgggttt gttagttgct caaacgaatc caaagtttga ttcatatctc
      961 catttttgac agactctatg gatttatcga ggatttctat gatgtctttt atttcctgaa
     1021 taggagcaga gtattccttg ggctttagga atcccgatct ttttacctca cctaatttat
     1081 ctgatatgtc tctagaaagc tcatagtatt cttccttgcc cgtaattgat ttcttttgct
     1141 ttattgtcac taagcccttc atacttagtc tcattacagc ttcttcaaca tctagtctat
     1201 ccatgcccgt tgcccaaaca atttttccaa catagtcata accctgtcgt aaggattcaa
     1261 gtacaactac ctcaataatt ctcatgaaac cttcttcagc acgggcattt tcaaaatctt
     1321 tatcacgtac ggctttcttt gcatgtgaaa tatctatttc aattgccctc tttagggctt
     1381 ccattccatc atctacctta ccatctaagg taagataaca cgcatagttg taccaaacca
     1441 atccgtcact aggattcgcg tctagtgctt tggtacaaca ctctatggct ttggtataat
     1501 tattcatttt atagtacgca agtcctttca ggttccaagc ttcatgatta tcaggatcaa
     1561 tgtttaatgc catgtcgtaa gaggaaatgg caaaggagta atctcgtaaa tgaaagtggg
     1621 catatccttt ctttatccaa gcttcaacat agttagggtc taatcttagt gctaattcaa
     1681 aacttcgtat ggcatcgctt aacttgtcgt ttgacatgta atttacacct tttttatata
     1741 ggtcacgtac ttgaaagtca agatggtccg tatctttatg gacttcggat ttagaattat
     1801 cctccttgtc tttagctctg aagaatctgc tcatcgctac tgattactcg tatcaaaata
     1861 aatagatttg gacaattaaa atattgtgga tcttagatct tacaatgtcg gttcatttac
     1921 atatgaggac tttttgaatt agtgcagatt gaataatgtc tagtgtgcca gctaaaaatt
     1981 cagaataaca ctaattagta cattcctcaa gcttgaataa tcctaaagtt gaatattttg
     2041 gaagatttca ttcttttaag aatgagtctt gttttattag ccattaattc aaggagatgc
     2101 aataaaatca tagttactgt gttagagaat gacttgaaat tgtaatagtt cgtaattcga
     2161 atacttgtcc tgccttgcaa atactatgaa tatcataact cacgatactg gcaatagtaa
     2221 tgctcgtctt attcagtgta ctattacaag gtaacagtaa tataaaatgc cgagcattta
     2281 ttcaatgatt taaggatatc ttggaaggat taacgatgat tcatgacaat aataggacat
     2341 tttggaaacc cctctaaaca aattcattca tatgatactg acagacgagc gattccccaa
     2401 ggcaagttta tcaataattt ttctcgcacg tcactcgtac gcaaggcaat gcagtattat
     2461 gatactttca taatttacaa atattatgat taattagttt tataataaaa ttggattaga
     2521 atcattagaa tttcatatta tattgttata ttttttatac ttctctaaaa tattggtgaa
     2581 taatgtttag gaagaacctc actatcttta tgttagttgg aattttgaca acaatcactg
     2641 taacatcaac ctacctaatg aacgcttccg cttacaagcc tgacgatcct gcagcaaaat
     2701 ataattgctt tatgactgac gcgaatggaa actataattt aactgcagaa ggcgatttga
     2761 ttccttgcga attcgataca ggtgatcatg catggatgct aacttcatca gcattggtac
     2821 ttgttatgac tcctgcgggt ttggcgatat tttatgctgg actgtcaaga caaaagaacg
     2881 ctgtaaatac attacacatg gtatttctta ccacaggtct agttgctgtt caatttgccc
     2941 tatgggggta tagcttggct tttggtcccg atgcaggtgg ctatggcttc ataggaacat
     3001 tagattgggc tggtctgaat aacgttattc atgatgcccc gtcattggcc tatgcaacaa
     3061 ctattccgca caacacattc atggtattcc aaatgatgtt cgccataatc actcctgcct
     3121 taatcgtggc ctcagtagcc gagagaatga aatttagcgc attcataatc ttcgtaatat
     3181 tgtgggcaac ttttgtatat gactttgctg cccactggac atggtcagta tcagcgccag
     3241 acaactatgg tatgaatcct ggatattctg gctttggatg gaccggcgct tttggatcac
     3301 ttgactttgc aggaggaaca gtcattcata tcacttcagg atgggctggc cttgtggtag
     3361 cactaatgct gggaagaaga attggatatg gcaaagttcc aa
//
LOCUS       DASPFX010000304         2224 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1208786, whole genome shotgun sequence.
ACCESSION   DASPFX010000304 DASPFX010000000
VERSION     DASPFX010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208786"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(264..1433)
                     /locus_tag="VD694_06650"
     CDS             complement(264..1433)
                     /locus_tag="VD694_06650"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12421.1"
                     /translation="MLISDIHESFNTLRNTPVFDFIEPEVIADASSSISQIIGILVDR
                     NVNDIFIPLSGKVAIITTRDILGIRNITSTQPSILGKTIPTLSSQSKIAEAVRLMSLY
                     RLRALPLVEKNEIIGQISAKRIIQEIRDTMIRTKSGKLSVSDIMTKSPIVIKKSDKIP
                     TAKQIMKRRIIDHLPVLQENRLAGIITSKDIIELMLPTERVGRNSRGIDGTEDRLDIS
                     IGGIANKQVLISNTYDTVQSVTDLIIEHNSTYCIISAFDEVQGIVTYRDIISLLGEKV
                     EAEIPIFLIGLPEDPLEAELAKSKFANIVTLLKKIYPDIEEARCRLKIRDIQGSRRRY
                     EVDANIISTHGIDTYVNVGWDLAKMFDQMSDSLKKMISHKITKRQKGSKYRTRPN"
BASE COUNT          677 a          395 c          364 g          788 t
ORIGIN      
        1 ataataaaat ggatcctttg attgcatcac taaatgaaat atatgataaa tatattatgc
       61 ctgaaagacg gaagaaaaag aagataatta acaagcgcat ctctgaaaca aaaggcgtct
      121 ttcgatactg atttaagagt caaaaaaaac atttgataag gtcaaggagc aatctagata
      181 attatccaga attaggatca tcgtcgaaaa aaagttctaa gaatatggga tgatccgctg
      241 attgcaaatc taagccagaa atatcaattt ggtctggttc tatactttga gcctttctgt
      301 ctcttcgtta ttttatgtga tatcattttt ttcaacgaat cactcatttg atcaaacatt
      361 ttcgctagat cccatccaac gttgacatat gtatctattc catgcgtaga aattatattt
      421 gcatcgactt catatcttct cctcgatcct tgaatatccc ttatctttag acgacatcga
      481 gcctcttcta tgtcaggata tatcttcttt agcaatgtaa ctatatttgc gaacttcgat
      541 tttgcgagct ctgcttcgag agggtcttct ggtaaaccaa ttaagaagat cggaatttct
      601 gcttcaactt tttctccaag taaagagatt atatccctgt aagttactat tccttgtact
      661 tcatcaaaag ctgaaatgat acaatatgta gaattgtgct caataatcag atccgtcact
      721 gattgcaccg tgtcataagt gtttgagata agaacttgct tgtttgctat tccgccaatg
      781 gaaatatcaa gtctatcctc agtgccatcg attcctcgcg aatttctacc aaccctttct
      841 gtaggtaaca tcaattctat aatatccttc gaggtgatga ttccggccaa ccgattttcc
      901 tgaagcactg gtaggtgatc tattatcctc cttttcatta tttgcttagc agtaggaatt
      961 ttatcactct ttttgatgac tatcggactt ttggtcataa tatctgacac acttaacttc
     1021 ccgctcttgg tccggatcat agtatcacga atttcctgta taattctttt tgccgagatc
     1081 tggccgataa tttcgttttt ctctacaagt ggaagcgccc taagtctgta caaactcata
     1141 agcctgactg cttcggcaat tttactttga gaactaagtg ttgggattgt ttttcccagg
     1201 attgaaggtt gtgtcgatgt tatgttccta attcctagta tatctcttgt agtaatgata
     1261 gctacctttc ctgaaagagg tatgaatata tcattaacat ttctgtcaac taatattccg
     1321 attatttgtg aaatagaact actagcatcg gcaattactt caggttcgat gaaatcaaat
     1381 acgggtgtgt tgcgtaatgt attgaagctt tcgtgaatgt ctgatattaa cattacaata
     1441 attatcaatt acatacttat taaaaataac taacgttcaa attgaatcga atcgatcgta
     1501 gaaagttgga aaaacttagc aggcagccac aaatgactcg gtaattaaaa agtaaatttt
     1561 ttatttcaat aaacgattta tccaatcccg attagtttta ttttttagta ataatcaaat
     1621 ttcatcttaa acttttttat gtattcatgc acatacaact gtatgttcgg tcttacaatc
     1681 tatcttatgt atttggctga ttatctactg agaagaaaaa ataagattat ttgcggactt
     1741 tgcggactta tattaaaaac agaaacggag ctggatgcgc atattagaag cgatcataaa
     1801 tacaatgtct aatatgcaac tttaaaatga ttttttcggc tatatctttc aacttggtga
     1861 taacacaatt acgtatctaa atgcttgtct gttaaatgct tcgataggtc tttacgtttt
     1921 atttcctcat tgcagaattt acacttgacc cgttcattta gcagtttagt gcactcttta
     1981 caatagtgac tgtggatgtc ggatgtttta ctgaatgttt cagtttctat aattttctcc
     2041 cgtccgcagt tgttacactt gtataatttg ccaatctttg atacgtcaaa caatttgaat
     2101 tacaataaaa tggaattaat attttaagat aattattttc ttggcatgta atgttagctt
     2161 tcaaatggcc tgtaaccaat cctggaaaaa ctttttaatt gaaattgcaa tgaggacaca
     2221 tggt
//
LOCUS       DASPFX010000305         2016 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1084216, whole genome shotgun sequence.
ACCESSION   DASPFX010000305 DASPFX010000000
VERSION     DASPFX010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1084216"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..455
                     /gene="grpE"
                     /locus_tag="VD694_06655"
     CDS             <1..455
                     /gene="grpE"
                     /locus_tag="VD694_06655"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HXW12422.1"
                     /translation="YTLADFDNYRKNIEKQNTLRILSVKAEMLSTIINLREDFVRALD
                     TLKHHKVDSSILEGLVNILKSIDIYLQKEDVKEIRALNTVFDPNFHEIIGFSYFETDM
                     EENIITKEVRKGYLLNERVLRPSLVEVSKKIVKNIDSDNKENTKGDDN"
     gene            456..>2016
                     /gene="dnaK"
                     /locus_tag="VD694_06660"
     CDS             456..>2016
                     /gene="dnaK"
                     /locus_tag="VD694_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HXW12423.1"
                     /translation="MGKIIGIDLGTSNSAAASLSGGKPVIIQAAEGTSIGGKSFPSVV
                     AFSQDGQLLVGEPARRQMLSNPEGTVIAAKRKMGTDYKFKVFGKEYTPQQISAFILQK
                     IKKDAEAFLGDTVDKAVITVPAYFNDNQRQATKDAGEIAGLEVVRIINEPTAASLAFG
                     LDKVQSDLKIMVFDFGGGTLDVTIMDMGGGVFEVKSTSGDTQLGGTDMDNILIDYLVN
                     EFKNQSGIDVKNDKAAMMRIREAAEKAKIELSNIVTTEINLPFLAYDQSTGPKNFAIT
                     LNRAKLEELLRPVVERCRNPMSQAIKDAKLSTTDIDKIVLVGGPTRMPIVKEFVKSVM
                     NKEPERGVDPMEAVALGAAIQGAIISGEVSTDILLVDVTPLTLGVEVMGGLKETLIER
                     NTTIPTKKSKVFTTAADYQTAVTIHVVQGERTMAADCVSLGMFNLSGIPPAPRSVPQI
                     EVTFDIDTNGILNVTAKDLATSKESKITISASTKLSKEEIEKLKKDSDAFAEVDKKKR
                     EEAELRNESDNL"
BASE COUNT          726 a          307 c          428 g          555 t
ORIGIN      
        1 agtatacctt agccgatttt gataactata gaaagaatat tgaaaaacaa aatacgttga
       61 gaatactttc tgtaaaggct gaaatgctat caacaataat taatttgcga gaagattttg
      121 tacgtgcctt ggataccctc aaacatcata aagttgacag ctctattctc gaaggattag
      181 tgaacatact aaaaagtatt gatatatatc tgcaaaaaga agatgttaaa gaaataagag
      241 ccctaaacac tgtatttgat cctaactttc acgaaattat tgggttttct tattttgaaa
      301 ctgatatgga agaaaacatt attactaaag aggtccgcaa gggttatttg ttaaacgaac
      361 gtgttcttcg ccccagtttg gttgaagtat ctaaaaagat agttaaaaat atcgatagtg
      421 ataataaaga gaatacaaaa ggagatgaca attaaatggg aaaaataata ggaatcgatt
      481 tagggactag taattctgct gctgcgtctt taagcggtgg aaaaccagtt ataatacaag
      541 ccgctgaggg tacttcaatt ggaggaaaat catttccatc agtggttgcg ttttcacaag
      601 atggtcagct gcttgttggg gaacctgcaa gacgtcaaat gctatcaaat cctgaaggaa
      661 ctgttattgc tgcaaagaga aaaatgggta cggattacaa gtttaaggtt tttggaaagg
      721 aatatactcc gcaacaaata tctgcattta tacttcagaa aattaaaaag gatgctgagg
      781 catttcttgg tgataccgtt gataaagctg taattactgt tccagcatat tttaatgata
      841 atcagagaca agcaacaaaa gatgctggcg agattgctgg gcttgaagtt gtgagaatca
      901 tcaatgaacc tacggctgca tccctggctt tcggattaga caaagtacaa agtgatctta
      961 aaatcatggt ttttgatttc ggtggaggaa cattggatgt taccattatg gacatgggcg
     1021 gtggtgtatt tgaagtaaaa agtacatctg gtgatactca actgggtggt acagatatgg
     1081 acaatatttt aatagattat cttgttaatg aatttaagaa tcaatcagga atagatgtga
     1141 aaaatgacaa agcagctatg atgaggatca gagaagctgc tgaaaaagca aaaattgaat
     1201 tatccaatat agtaactaca gaaataaatt taccattttt agcatatgat caatctacag
     1261 gaccaaagaa ttttgcaatc actttgaata gggcaaaact ggaggaatta ttacgacctg
     1321 ttgtagagag atgtagaaat ccaatgtcac aggctataaa agacgcaaaa ttatcgacaa
     1381 cagatattga caagattgtt ttggtaggag gtcctacccg aatgccaata gtaaaggagt
     1441 tcgtaaaatc agtcatgaat aaagaacctg aacgtggagt agaccccatg gaagcagttg
     1501 ccttgggcgc agcaatacaa ggtgctatta tttcaggaga agtgtccaca gatatcttat
     1561 tggttgatgt cactcctttg acccttggag tagaagtcat gggtggactt aaagaaactc
     1621 taatagagag aaataccact attccaacaa agaaaagtaa agtgtttact acagctgcag
     1681 attatcaaac cgcagttacg attcatgtag tccaaggaga gagaacaatg gccgccgatt
     1741 gcgtttcatt gggtatgttt aacttgtctg gtataccgcc agctcctaga tctgtccccc
     1801 agattgaggt gactttcgat atcgatacta atggaatatt gaatgtaact gcaaaagatc
     1861 ttgctacttc aaaagaatca aaaatcacca tttcagcaag cacaaaatta tcaaaagagg
     1921 aaatagaaaa attaaagaaa gactcggatg catttgctga agtagataaa aagaaacgtg
     1981 aggaggccga attaagaaac gaatcggata atttga
//
LOCUS       DASPFX010000306         2946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1029872, whole genome shotgun sequence.
ACCESSION   DASPFX010000306 DASPFX010000000
VERSION     DASPFX010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1029872"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2004
                     /locus_tag="VD694_06665"
     CDS             <1..2004
                     /locus_tag="VD694_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HXW12424.1"
                     /translation="NGYKGKIYPVSPTNEYVSGIKAYKSVLDIPEDIDLAVVATPNRI
                     VPKVMEEVGLKKIQGSIIVSAGFKEVDEQGATLEREVAAICKKYGTRVIGPNCLGIMS
                     LSKENMMNSTFLKITPKHGNIALVSQSGAICAATVEDAMAQGIGFSKVISMGNKIDVD
                     ENDVLELLCHDPETSVIIMYLEDIHDGRRFMEIGRKTTKEYNKPIVVIKSGRTPEGAK
                     AAMSHTGALMGADEVYDALFLQSGVIRVDSMQELFDLATAFSKQPIPKSDKGTVIVSN
                     AGGPAIISTDACSKYGMKLADISASREEIAKVIPAHGSARNPVDIVGDADYNRFEKVL
                     NEVVSNPNVGSIVTMCTPSATLDYNDLARTIVKTTADSGRTSLAALMGLAEGTENKQI
                     LSDGGIPHFPYAEPAIKTLKAMYDFSNWIAEKEIEIKKFNVDKEKVKQIFEMVRKDGR
                     KNLLEEEGYDVLNAYGFPRPKSYLCTNEEECAKRAEEIGYPVVMKIVSQDIIHKSDAG
                     GVKVGLKNRQQVSSSFSEIINNAKNYKKDANIKGVLVQQMIESARETILGAKHDNLFG
                     PLIMFGLGGIYVEALKDVIFRLAPISEQEAMKMVESIKTYKILKGIRGQPPSDIKVLV
                     ECLLRLSQLVTDFPEITEFDMNPLLVLEEGKGAIAVDVRIGLA"
     gene            complement(2044..>2946)
                     /locus_tag="VD694_06670"
     CDS             complement(2044..>2946)
                     /locus_tag="VD694_06670"
                     /inference="COORDINATES: protein motif:HMM:NF017088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain-containing protein"
                     /protein_id="HXW12425.1"
                     /translation="SQNCIETFSKCSVCQGYVIRQNIRLYNLNSTQVIIKNMMEDQGQ
                     NQDLREKKLRGSGGYVLAHVTDEEQKKGNLGGPELFLAGIGRLPSDRLVKYHCNKCDK
                     DYDGSPSISFENPNEDLGEGVTLFEKGEYKCNTCKGIIAQYRKFDAPEESESREEPKA
                     VENSSTAEKPVTKNNDKISKTTNNPPSSASIAQNEFISIQSLVGMPAYDCDAMLIGNV
                     QEIGLKKTSKGKVEINLKIPKKSDNQSVEVTWKNISKIGDIILLENSESSQPSQQGKC
                     SNCDFQNENDAVFCSECGKKINSE"
BASE COUNT          952 a          520 c          602 g          872 t
ORIGIN      
        1 aatggttata aaggcaaaat ctatccggtc agtcctacta atgaatatgt atctgggatc
       61 aaggcataca aaagcgtgct tgacatacca gaagacattg atctagccgt tgtagccact
      121 ccaaacagga ttgttccaaa agtaatggaa gaagtaggat tgaaaaaaat tcagggttcc
      181 ataattgttt cagcaggatt caaagaagtt gatgagcagg gagcaactct tgagagggag
      241 gttgctgcca tatgtaagaa atacggtact agagttattg gcccaaattg cttgggtata
      301 atgagcttgt caaaagaaaa catgatgaat tctacatttc tgaagattac accaaaacat
      361 ggaaacattg ctctcgtttc acaaagtgga gctatctgtg ctgctacagt tgaagatgct
      421 atggcacagg ggataggatt ctcaaaagta atcagcatgg gaaacaagat agatgttgat
      481 gaaaacgatg ttttagaatt attatgtcat gatccagaga cttctgtaat cataatgtat
      541 cttgaagaca ttcatgatgg tcgaaggttc atggaaatag ggaggaaaac aaccaaagaa
      601 tacaataagc caatagttgt cataaaatct ggtagaactc cagaaggagc aaaggcagct
      661 atgtctcaca caggggcctt gatgggagct gatgaagtgt atgatgcatt gtttttgcaa
      721 agtggcgtaa ttagagtgga ttctatgcaa gaactctttg accttgctac tgcattttca
      781 aaacaaccaa ttccaaaaag tgacaaaggt actgtaattg tatcaaatgc aggtggacct
      841 gctataattt ccacagatgc gtgttcaaaa tatggcatga aactagctga tattagtgct
      901 tctagagaag aaatagccaa ggttattcct gcgcacggat ctgccagaaa cccagtggac
      961 attgtgggag acgctgacta taacaggttt gaaaaggtcc tcaacgaagt cgtttctaat
     1021 ccaaacgtag gttcaattgt tacaatgtgc actccatcag ctactttgga ttataacgat
     1081 cttgcaagaa ccatcgtcaa gactactgcc gattccggac gaacctcact tgcggcactt
     1141 atgggtcttg cagaaggaac agaaaataag caaattcttt ccgatggcgg aattccgcac
     1201 tttccatatg ctgaaccagc tataaagacc ctgaaagcaa tgtatgattt ttctaactgg
     1261 attgcggaaa aggaaattga aattaaaaaa ttcaatgttg ataaagaaaa ggtcaaacaa
     1321 atatttgaaa tggtaagaaa ggatgggaga aaaaatcttt tggaagagga aggatatgat
     1381 gttctgaatg catatggatt tccgaggcca aagagttacc tttgcacaaa tgaggaagaa
     1441 tgtgcaaaaa gagctgaaga aattggttat cccgtggtca tgaaaattgt atctcaagat
     1501 ataatccaca aatcagacgc cggaggagta aaggtaggtc tcaagaacag gcaacaagtt
     1561 tcatcttcat tcagtgaaat aattaacaat gcaaagaatt acaaaaaaga cgcaaatatt
     1621 aaaggagtac ttgtccaaca gatgatagaa tctgctagag aaacaattct tggagcaaaa
     1681 cacgataatc tttttggtcc tttaatcatg tttggccttg ggggaatcta tgtagaagct
     1741 ctcaaagatg tgatatttag actggctcct attagtgaac aagaagctat gaagatggta
     1801 gaatcaatca agacatacaa gatattgaaa gggattagag ggcagcctcc atctgacata
     1861 aaggtattgg ttgaatgcct cctacgatta tctcagctgg ttacagattt tcctgagata
     1921 acagaattcg acatgaatcc actattggtg cttgaggaag gtaaaggagc aattgcagta
     1981 gatgtaagga tcggccttgc ataacaacca gagttttatc agcccttact gacaatacag
     2041 gaactattca ctattaattt tctttccaca ctcagaacaa aacactgcat cattttcatt
     2101 ttggaaatca caatttgaac acttgccttg ttgactgggt tgagaagact ctgaattttc
     2161 aagcaaaatt atatcgccaa ttttagatat atttttccaa gtaacttcaa cactttgatt
     2221 atcactcttt ttcggaatct tgagatttat ttccactttt cctttggaag tcttctttaa
     2281 accgatctct tgaacattac caatcaacat agcatcgcaa tcatatgcag gcattccaac
     2341 aagggactga atagagataa attcattttg tgcaatagaa gctgatgaag gtggattgtt
     2401 agtggttttg gaaattttat cattattctt ggtaacgggt ttttcagctg tacttgaatt
     2461 ttctactgcc ttgggttctt ctctagattc ggattcttct ggagcatcaa attttctata
     2521 ttgtgcgatt atgcctttgc aagtattaca tttgtattca cctttttcaa agagtgtaac
     2581 gccttcgcca agatcttcgt tgggattttc aaaactgata ctaggtgatc cgtcgtagtc
     2641 tttatcacat ttgttgcaat gatatttgac aagcctgtca gaaggaagtc ttcctatgcc
     2701 tgctaggaat aattctggcc ctcctaaatt gccctttttt tgctcttcat ctgtaacatg
     2761 ggctaataca tacccaccag aaccgcgtag tttcttctcc cgtaaatctt gattttgacc
     2821 ctggtcctcc atcatatttt ttattatcac ttgtgtagaa tttaagttat agagtctgat
     2881 attttgtcta atcacatacc cttgacagac tgaacatttt gagaaagttt caatacaatt
     2941 ttgact
//
LOCUS       DASPFX010000307         2320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2108820, whole genome shotgun sequence.
ACCESSION   DASPFX010000307 DASPFX010000000
VERSION     DASPFX010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2108820"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VD694_06675"
     CDS             <1..208
                     /locus_tag="VD694_06675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12426.1"
                     /translation="ILSINFINLSLVKTRDLILRLEIKIEVPQDIVSDEKRLDSVQQG
                     ILNAISKGPYEEGLSFKTISAYFS"
     gene            complement(339..674)
                     /locus_tag="VD694_06680"
     CDS             complement(339..674)
                     /locus_tag="VD694_06680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12427.1"
                     /translation="MSIEFVKANLTTESYFAEELIEYITKNGTAIDTDTGNTIFHYNR
                     IRKTILNALDCYVDGLKNTIKIMSPNSADPFSDFRSMQQEIKMCTSLKNDIKKQYGNI
                     TPIKDRALF"
     gene            complement(1032..1547)
                     /gene="nuoB"
                     /locus_tag="VD694_06685"
     CDS             complement(1032..1547)
                     /gene="nuoB"
                     /locus_tag="VD694_06685"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HXW12428.1"
                     /translation="MIKNLVNPTNFNLMVGKLGDVLTRALDLPLGYAINWGRIWSLWP
                     VHLETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLIVVQGTVTRKMAPRLRMVY
                     DQMPDPKYVIAMGACAITGGLYIDSYNVLPGIDGIVPVDVYVPGCPPRPETLIQGCML
                     LQEKIKRMKIR"
     gene            complement(1612..2013)
                     /locus_tag="VD694_06690"
     CDS             complement(1612..2013)
                     /locus_tag="VD694_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HXW12429.1"
                     /translation="MIQKTASLPLAGETVTQFAPIMYMLGFGLLASVPVLFLSKLVSP
                     RRRYNPVKFLPMECGQMPSGEGRSHFMMQYYSYILMFVVFDVMSIFLYAWGASLFSIS
                     RSATLPIIGFLAIMFSAMGYALYLSGRKGIW"
     gene            complement(2034..>2320)
                     /locus_tag="VD694_06695"
     CDS             complement(2034..>2320)
                     /locus_tag="VD694_06695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="geranylgeranyl reductase"
                     /protein_id="HXW12430.1"
                     /translation="SLSKGCSRKSLEEYEKFWKDRVSSKIKSSLKVQSRWLQMDDDSW
                     DKEVEIIEQMTVDDFLDFIKAQITTSRLMKLVLTHPQATAKQLFRIILDK"
BASE COUNT          732 a          435 c          401 g          752 t
ORIGIN      
        1 catattaagc attaatttca ttaatttatc attggttaaa actagagatc taatacttag
       61 attggaaatc aagattgaag ttccgcagga tattgtttca gacgagaaac gactagattc
      121 agttcagcaa ggtattttga acgcgatatc aaaagggcca tatgaagagg gattgtcatt
      181 caaaactatt tctgcatatt ttagttgata tatgttgcat gtcctacatc tcaatttgga
      241 ttagtgaata tgcaacatga cacgtcttag aaaataacat tactcaattt ttaatggcct
      301 atatattacg gatatttagt attgtagcaa aaaaaattct aaaataaagc cctatcctta
      361 atgggagtta tgttgccgta ttgcttctta atgtcattct ttagacttgt gcacatcttg
      421 atttcttgct gcatcgaacg aaaatctgag aacggatctg ctgaattagg ggacattatt
      481 tttattgtat tttttaggcc atctacataa cagtctaaag cattcaagat agttttcctt
      541 atcctgttat aatgaaagat tgtatttcca gtgtcggtgt ctatagcagt cccattcttg
      601 gtgatatatt caattaattc ctctgcgaaa tacgattctg ttgtcaaatt agcctttaca
      661 aattcgatac tcatttggac cacgctgaat tctacaactg atttatttaa tactgttgaa
      721 taatgataaa gtgcatttat taaaatatct gtcttccatg aacaatgatc cattaattga
      781 ttatggaact taagacttaa taccatttag agttgcactt ttcagatgtt gtgttcttgt
      841 gggggggggg caatatccat ttagtaaaat gtagatgact taattattgg atacatgtga
      901 aataaaaaag caaaacctat gcaattacat cacttaaata tcattccaca gttaatatga
      961 acgcaatatt ctagcgctca gttaaggtat tgcatgttac tattctagat attggcatgc
     1021 agcagatatg gctatctaat cttcatcctt ttgatttttt cttgtagcaa catacatcct
     1081 tgaatcaggg tttcaggtct tggtggacag cctggtacgt atacatcaac aggtactatt
     1141 ccgtctattc ctggtagcac attataagaa tcgatataaa gtcctcctgt gatagcacag
     1201 gcgcccatgg caataacata tttgggatct ggcatctgat cataaaccat tcttaatcgt
     1261 ggagccatct ttcgtgttac agtgccttgt acaacaatca aatcacattg tcgtaaagaa
     1321 ccaaatgctt caattattcc aaatctttca acatcatatc tggggcctga agctgctcca
     1381 aattctacac tgcagcaagc agtttcaaga tgtactggcc atagcgacca aattctaccc
     1441 caattaattg cataacctaa tggaaggtcc aatgctcttg ttagaacatc tccaagtttt
     1501 cctaccatga gattgaaatt ggtgggattt accagatttt ttatcaatac taaatctgag
     1561 cctccaaatt gaatccatca tttgtaattc tcagataaac atgttgaaaa tctaccaaat
     1621 tcctttcctc cccgaaagat aaagtgcgta tcccatggca gaaaacatta tcgcaaggaa
     1681 acctattatt ggtagcgttg ctgagcgtga aatagagaaa agtgacgccc cccatgcata
     1741 aaggaatatt gacattacat caaaaacaac aaacatgaga atataagagt aatattgcat
     1801 cataaagtgc gaacggcctt caccagatgg catctgacca cattccatcg gcaagaactt
     1861 tacaggattg taccttcgtc ttggtgaaac aagctttgat aaaaacagga cgggaacaga
     1921 ggcaagtaac ccaaagccaa gcatgtacat gataggcgca aactgggtaa cggtttctcc
     1981 agccaagggt aaacttgctg ttttctgaat catataaaaa tcttgcttca gatttatttg
     2041 tctaaaatta tcctaaacaa ctgttttgca gtcgcttgtg gatgtgtaag taccaatttc
     2101 ataagcctac ttgtagtgat ttgagccttg atgaaatcaa gaaaatcatc tactgtcatc
     2161 tgttcaataa tttcgacttc cttgtcccaa gaatcatcat ccatctgtag ccatcttgat
     2221 tgaaccttaa gggatgattt tattttggaa ctaacgcggt ctttccagaa tttttcatat
     2281 tcttctaatg actttctgct acagcctttc gataaagagt
//
LOCUS       DASPFX010000308         2427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1778562, whole genome shotgun sequence.
ACCESSION   DASPFX010000308 DASPFX010000000
VERSION     DASPFX010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1778562"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..354)
                     /locus_tag="VD694_06700"
     CDS             complement(<1..354)
                     /locus_tag="VD694_06700"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12431.1"
                     /translation="MLIKRILTAIDGSNPSFKASTFAIDMAKRFDAELIVLHVIDPRY
                     KELEIAISPRPGKFKEIATRAMERGEKIVETVRHKATAMNVNVKTDVISDFTSVTKDI
                     LEYAKVNKVDIIVVGS"
     gene            493..834
                     /locus_tag="VD694_06705"
     CDS             493..834
                     /locus_tag="VD694_06705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12432.1"
                     /translation="MLGKDKCSVCGNFTDIAAKVTSNPNILYCKDCQDKEVQRLGRNF
                     DLMKFVCIRCGSTNVQTDNLRTGINEDVINVKNSTTDEIIAVYAVARLSCIDCKNIFQ
                     VNILDNGPRTK"
     gene            complement(882..1307)
                     /locus_tag="VD694_06710"
     CDS             complement(882..1307)
                     /locus_tag="VD694_06710"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12433.1"
                     /translation="MFSKVLVPIDGSDNSFRALDAALLLSEKLGAKVTAIHVMEDIPV
                     LHIQSEKLLRQLLDAYKKESQKILLKCSEISARKGLSIDTKLLQGNAGSIILDFCEKE
                     KYDTIVMGSRGMGKFKELVLGSVSNKVIHHSSCPVMIIR"
     gene            1401..>2427
                     /locus_tag="VD694_06715"
     CDS             1401..>2427
                     /locus_tag="VD694_06715"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HXW12434.1"
                     /translation="MSKEKKPSSNPHSTHSPFNKVRIKSLSEILRALGPGVITGAADD
                     DPSGIATYSQVGAKFGLGLLWMTLFLLPTMIVIQEMCARIGLLSGNGLAALIKKKYSA
                     KVVYPISSLLIVANTINIGADLGAMSASITIIFPEVPFVVTAVLFSTFIIVAEIFIPY
                     DRYVKVLKYLVLSLFAYVITAIIVGGNISKIFFTIIPSITFSSDYAVMFVAVIGTTIS
                     PYLLFWQTSEEAEEDVTKHRIKEIGEGKPKISPREIMLMKEDIGIGMFFSQFIMWSII
                     ITSAGSLYFAGITDIQTADQAASSLEPLVHSFPNSGQIAKFIFAFGIIGTGLLAIPVL
                     SASSAYAL"
BASE COUNT          756 a          451 c          421 g          799 t
ORIGIN      
        1 acttccgaca acaattatat ctactttatt gacttttgca tattctaaaa tatctttagt
       61 gactgatgta aaatcactaa ttacatctgt cttgacattc acattcattg cagttgcctt
      121 atgtctcacg gtctctacaa ttttctctcc acgttccatt gctctagtcg caatttcctt
      181 aaatttaccg ggtctgggtg aaattgcgat ctctaattcc ttgtaccttg gatctatgac
      241 atgcagaact atcaattctg catcaaatct tttggccata tcaattgcga aggtgcttgc
      301 tttgaaggat ggattagagc catcgattgc agttagtatc cttttgataa gcaacaatca
      361 ttcataatag tttgacattt tattaatttt tcatcgttcg acatatttta aacatgggct
      421 gtttaaaata tgtcgaacga tgaaaaataa tgttaatcaa gagttatatg ttataatttc
      481 acagaaagat caatgctcgg aaaggacaaa tgcagcgttt gtggaaattt tactgatata
      541 gcagccaaag ttaccagtaa tccaaatatt ctctactgta aggattgcca agataaggaa
      601 gttcagcggc taggaagaaa ctttgatttg atgaaattcg tttgtatcag atgcggatca
      661 actaatgtcc agacagataa tttacgaaca ggaatcaatg aggacgtcat caatgttaaa
      721 aattcaacca cggatgaaat aattgcagtg tacgcagttg ctcgtttgtc ctgtattgac
      781 tgcaagaata tttttcaagt aaatatttta gataacggcc ctagaactaa ataatttcat
      841 agctgccttc tcttagtaaa gtgataaagg attagatacg attatcttat tatcataaca
      901 gggcacgatg aatgatgaat tactttgttc gacacactgc ctagaactaa ttctttaaac
      961 tttcccattc cgcgacttcc catgactatg gtatcatatt tttctttctc gcaaaaatct
     1021 agaattattg aacccgcatt tccttgcaga agtttagtat ctatcgataa tccctttctt
     1081 gcagaaattt cagaacattt taataaaatc ttttgacttt ctttcttata tgcatctaat
     1141 aactgtctta gcagtttttc tgattgaata tgcaaaacgg gaatatcctc cataacatga
     1201 attgcagtga cctttgcccc taatttttct gagagtaaca acgctgcatc taatgcccta
     1261 aacgaattat cagaaccgtc aatgggtacc agaactttcg agaacaatga atattcttag
     1321 attaatagtg cttattatac tataagcaga tctcattaaa acactaaata catgtagaga
     1381 tatagaaaat tggctttcag ttgtccaagg aaaagaagcc tagttccaat ccacactcca
     1441 ctcattctcc ttttaataaa gtacgtataa agtctctatc tgaaattctc agagcattgg
     1501 gtcctggtgt aataactggt gcagcagatg atgacccatc gggtatagca acatattctc
     1561 aagttggggc aaaatttggt cttggtctgc tatggatgac gctattccta ttacccacaa
     1621 tgattgtcat acaggaaatg tgtgcacgaa tcggtctttt aagtggaaat ggattggccg
     1681 ctttgataaa gaaaaaatat tcggctaaag ttgtatatcc aatatcaagc ctacttatag
     1741 ttgccaacac aattaatatc ggcgctgatt taggagctat gtctgcttca atcacaatta
     1801 tatttcctga agttcccttt gtggtaacag cagtactatt ttcgacattt attatagttg
     1861 cagaaatttt tataccatat gatagatatg tcaaagtact aaaatacttg gtactttcac
     1921 ttttcgcata tgttataaca gcaataattg ttggaggaaa tataagcaaa atatttttta
     1981 cgataattcc ttccataact ttcagttccg actatgccgt catgtttgtg gcggtaatag
     2041 gcacaacaat ttcgccttat cttcttttct ggcaaacttc tgaagaggcc gaggaagatg
     2101 taacaaaaca tagaataaaa gagattggag aaggcaaacc aaagatatct ccaagagaaa
     2161 taatgctaat gaaagaggat attggtatcg gaatgttttt ctctcagttc attatgtgga
     2221 gcataataat aaccagtgcc ggcagtctct attttgccgg gataaccgat attcaaacag
     2281 cagaccaagc tgcatcctct ttagagccgt tagtccatag tttccctaat tcaggtcaga
     2341 ttgccaagtt cattttcgca tttggtatca ttggtacagg attacttgcg atacctgttc
     2401 tgtcggcgtc ctccgcatat gcattat
//
LOCUS       DASPFX010000309         2821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1822140, whole genome shotgun sequence.
ACCESSION   DASPFX010000309 DASPFX010000000
VERSION     DASPFX010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1822140"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(345..1259)
                     /locus_tag="VD694_06720"
     CDS             complement(345..1259)
                     /locus_tag="VD694_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12435.1"
                     /translation="MDSLEKIKFDYTAQTRSLSHISCRKKSENCIFVGSGDSFVAGLI
                     AENISNHKCKCYSPADLTGSKFIENMTYYFISVSGRTRSNIEVAKRATRAGAKTVAIT
                     FDPTSELANVCNEIISFGALSTNTTTSYRAFTANVVMCLQLAGMSIPQKFEMWHRNGM
                     ALSSSFDHTCIPKDVLHILGNDVFYPLAIYASLKMAEFFGLTSVPNRMEEFCHSPVFG
                     IKPSHTVWILGRAEDNTSHKLRNLKNEFNFFELKNPDLLSELFEAIFFLQGFILGLCE
                     KHNFTELKYVLMKKVLALSSDIIYGDTA"
     gene            1456..1611
                     /locus_tag="VD694_06725"
     CDS             1456..1611
                     /locus_tag="VD694_06725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12436.1"
                     /translation="MLNLQDNNVSGNNQILGSPILSIILPTQHDKPVFQSPEDIKKII
                     PNGIRLR"
     gene            1823..2692
                     /locus_tag="VD694_06730"
     CDS             1823..2692
                     /locus_tag="VD694_06730"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HXW12437.1"
                     /translation="MITSELIAELIKNPNSIIVASRYTKGASLQNLPLLRRLISKGAR
                     TIARHGLSITDVQDPLSRCFALPRQLVNNVEIEGKGNQLLLEILVKVRSKGSNPVVIT
                     EIPFQQKFVYKFRKLELNQISEYLRAIWSLYRHSKNSKARSERIIKEQEKHRSIPFLS
                     KTARFFTVGASGLALNYIVSFLLSSVVSNLWYIQAAGIGIVVSVHSNFVFNKICTFED
                     RNFTLRHLIKQYFSFLALCAFGAMIQLSLTYIFFEHWHIHYAVSLMLAVCIASMSNFL
                     LNKKITFGEKIWE"
BASE COUNT          928 a          494 c          490 g          909 t
ORIGIN      
        1 aaatgaacta ataaagaaca actgcttcgt tagtcagcca agcggtggat gtaatcctca
       61 ataggaacaa agtcacgcag ctgggtaaag aaccacaaac ctcttttttt attttaatta
      121 actctaaaat agttaaatct atccggtatt tttttctctt taagcaatga gagaattatg
      181 attcttgtat ttcatttatt agatattgat aaacatcttt attgtttagt tggctgaatg
      241 tattgaattg ttttcaaatt tatgctcaat actaacgttc tcaaagggga aataattatg
      301 ccaaattcta tccattctat catttagtat tgatcaaagt tatttcaagc agtatcccca
      361 tagataatat ctgaagatag tgctaatact tttttcatga ggacatattt caattcagtg
      421 aaattatgtt tttcacatag ccccaaaata aatccctgaa gaaaaaaaat tgcttcaaat
      481 aattccgaaa gaaggtctgg attttttaat tcaaaaaagt taaactcatt tttcagattt
      541 ctaagtttat gacttgtatt atcttctgct cgacccaaga tccatacagt gtgagaaggt
      601 ttgataccaa atactggtga gtggcaaaat tcctccatcc tatttgggac ggaagttagt
      661 ccaaagaatt ctgccatttt gagtgaagca taaatggcca atggataaaa aacatcatta
      721 cccagaatgt gtaaaacatc tttgggaata caagtatgat caaagcttga ggagagggcc
      781 attccattcc tatgccacat ttcaaatttc tgaggtattg acattcctgc tagttgtaaa
      841 cacatgacaa cgtttgccgt aaaagcacga taacttgtag tagtatttgt cgacaaagct
      901 ccaaaagaga taatttcatt gcaaacattg gccagttcac ttgttgggtc aaacgtaatg
      961 gcgaccgttt ttgcccccgc tctagttgca cgtttagcaa cttctatgtt cgatctagtt
     1021 ctacccgaaa ccgagatgaa atagtaagtc atgttctcaa taaattttga tcccgtcaag
     1081 tctgcaggac tataacattt gcatttatga ttggatatat tttctgcaat caatccggcc
     1141 acaaatgaat caccagatcc cacaaaaata cagttttcgg atttttttct gcaagaaata
     1201 tgactcagag atcttgtctg cgctgtataa tcaaatttga ttttctctaa tgaatccata
     1261 ctaaatcaat attctgatct gaaaataaag tattatggaa atgcccacaa tttcttggtg
     1321 tatgaacgcc aataatttgt atagtcgtca acaatacggg aatactattg atgtaagcac
     1381 taacacgcgg ttttcatata ttattctcgt atgaaaatct taataagata tcaagcaaag
     1441 atcatattaa attcgatgtt aaatttacaa gataacaacg tatcaggcaa taatcaaatt
     1501 ttaggttctc ccattctttc aattattttg cccacgcagc atgataagcc ggtatttcaa
     1561 tctccagaag acattaagaa aataatccca aatggaatac gtttgagata atagtagctc
     1621 attatggcac agatactagt accactccca gcgagttgct ggttaagtca gacaaagatc
     1681 aagataccat agatgacaaa ttttatgata gtaccaaata ctttgaggtg aagggtagat
     1741 ttatctctgc tattttgaaa ggaatgcaat atcaacaggg caatttatcc tagttattga
     1801 tgcagatttt ccttatccca aggtgattac gagtgaattg attgccgaac tgataaaaaa
     1861 tcctaattcg attatagttg catcacgata taccaaaggt gcatctttac agaatttacc
     1921 tcttttacgt cgcttgatca gtaaaggtgc aaggacaatt gcaagacacg gattgagcat
     1981 tacagatgtg caggacccac tctcacgatg ttttgcatta cctcgacaac tcgttaataa
     2041 tgtagagata gaaggtaagg gaaatcagct tttgcttgaa atacttgtga aggttagaag
     2101 taaaggtagc aaccctgtgg ttatcacaga gatacctttt caacaaaaat tcgtatataa
     2161 atttagaaaa ttagagctca atcaaatttc agaatatcta cgcgcaatat ggagtctgta
     2221 ccgccatagc aagaattcaa aggcgcgatc tgaaaggatc attaaagaac aagagaaaca
     2281 cagatcaata cctttcctct ctaagactgc tagattcttt acagtgggtg caagtggact
     2341 tgcattgaac tatattgttt cttttctact ttcaagtgtg gtttcaaacc tgtggtatat
     2401 tcaggcggct ggaattggca tagtagtctc ggttcatagt aattttgtat ttaacaagat
     2461 atgtacattt gaagatagga attttacact tcgacattta ataaaacaat acttttcttt
     2521 cctcgcatta tgtgcttttg gtgccatgat ccagctgtcg ttaacataca tcttctttga
     2581 gcactggcat attcactacg cagtttcctt gatgttggct gtttgcattg cctcaatgag
     2641 taattttttg cttaacaaaa aaataacgtt tggtgaaaaa atctgggaat aacttttaga
     2701 tcagtcgggt aaagacgatt acgggatatc tcaattgtaa tttcacattg tttcgaaatt
     2761 catataatat agagaatcgt tcaatactgc atgaatctag ataagatgac tcctgcatat
     2821 g
//
LOCUS       DASPFX010000310         2078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_212900, whole genome shotgun sequence.
ACCESSION   DASPFX010000310 DASPFX010000000
VERSION     DASPFX010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212900"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..256
                     /locus_tag="VD694_06735"
     CDS             <1..256
                     /locus_tag="VD694_06735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12438.1"
                     /translation="FEAKQVKQGNIEYYLNIGWHKFAYAGVRFLNYSGLNIYPIYFLR
                     FRNKVYLFIFTRFDFHKNGVILNHPNQMKPQQVFVILLEN"
     gene            complement(509..706)
                     /locus_tag="VD694_06740"
     CDS             complement(509..706)
                     /locus_tag="VD694_06740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12439.1"
                     /translation="MLSKGARDGHILKFNMLLENWNVAVQDQEIISNEIKDIHNAITH
                     KDRGYYDPRQGQWVSELVPTH"
     gene            795..1793
                     /locus_tag="VD694_06745"
     CDS             795..1793
                     /locus_tag="VD694_06745"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HXW12440.1"
                     /translation="MLDEIDKTILSYLGKNGRISSTEIQRSLKDMGYQLTERAIRYRL
                     RRLEGDNVILGYSAILNPSFISEKLNRTITLKFKYTSNSSVLIERLKNYVEEAPFCVY
                     SARLSGGDFDWIAHFVFESVEQYELESNNFLNRFSDLIADYRSYDSKAVKASPYSIFD
                     EHDMIERKSRVYKILSSLQKYDNLNDKLQLIVESVVKYFDATFARIWLIDKERKYLVL
                     KFSAGKYKNIHGEFSKIPIDSVKIGSIVKTKKPAITNDVPNDPRIKHQDWARKENLKS
                     FAGYPLIYNRDTIGILGMFSEKKLNLADFEILGIFCSQISRELKSFFDAQEFLSVK"
     gene            complement(1899..>2078)
                     /locus_tag="VD694_06750"
     CDS             complement(1899..>2078)
                     /locus_tag="VD694_06750"
                     /inference="COORDINATES: protein motif:HMM:NF020050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged-helix domain-containing protein"
                     /protein_id="HXW12441.1"
                     /translation="IDKVILSSLSKNARIPAVDIANNLKNIGYRITERAIRYRLRRLE
                     QNNFLPNTILCLISY"
BASE COUNT          688 a          348 c          366 g          676 t
ORIGIN      
        1 atttgaagct aaacaagtca agcagggaaa tatagagtat tatcttaata taggatggca
       61 taaatttgcc tatgcaggag ttagattttt gaattactct gggcttaaca tctatccaat
      121 ctattttcta aggtttagga ataaggtgta tctctttatc ttcactagat tcgacttcca
      181 taaaaatgga gtcatactga atcatccaaa tcaaatgaag cctcaacaag tttttgtaat
      241 cttacttgaa aattaactga ctacgatgct tgttcatatc caattttccc gcgtcgttac
      301 acccaaccac tttgtagagc cattactcct tgaaggaact tgagtcatat gaagtgttat
      361 atttaaaaaa gccaaggtac tttataaaga gcaatgtgcg gtatcagcct atacaatgta
      421 cagtaaggct tagccaaatt tatcagaatg ggaatctgtt taacctcaaa gccatttata
      481 gacaggaagt tctcttttgt agaaacccct agtgtgtagg gacaagttct gaaacccatt
      541 ggccttgccg tgggtcataa tagcctctat ctttgtgggt tatcgcatta tgtatatcct
      601 ttatttcgtt tgagataatc tcctggtctt gtactgccac attccaattt tcaagtaaca
      661 tattgaattt caatatatgt ccgtctcttg caccctttga gagcactgta tactatcatg
      721 gatatcaata agtttactca tatcctttcc atatcggaaa tgaataaaaa gatgagtact
      781 tcatattgaa catcatgcta gacgaaattg acaagacgat cctttcatat ctcggcaaaa
      841 atggacgtat atcatcaact gagatccaaa gaagtctgaa agatatgggt tatcaactca
      901 cagagagggc tataagatat agacttcgaa gattggaagg tgacaacgtc attcttggat
      961 attcagcgat tctgaaccct agttttattt ccgaaaagct aaaccgtact attactctta
     1021 aattcaagta tacaagtaac tcgtcagtac ttatagagag actaaagaat tatgtagaag
     1081 aagcaccttt ctgtgtctat tctgctagat taagtggagg agatttcgat tggatagctc
     1141 acttcgtttt cgaatctgtc gaacaatacg aattggaaag taataatttc ttaaataggt
     1201 tctctgattt aatagcagat tatcgttctt atgattcaaa ggctgttaaa gcatctcctt
     1261 attcaatatt tgatgagcac gatatgatcg agaggaaatc acgtgtatat aagattctca
     1321 gttcattaca aaagtacgac aatctaaatg ataaacttca gctgatcgta gagagtgtag
     1381 ttaagtattt tgatgcaacc tttgctagga tctggctgat tgacaaagaa agaaaatatt
     1441 tggtattaaa atttagtgcc ggtaaataca aaaatattca tggagaattt tccaagatac
     1501 caatagattc agttaagatc ggttcaatag taaagacaaa gaaacctgct atcacaaatg
     1561 atgtgccaaa tgatccgagg ataaaacatc aagattgggc aagaaaagaa aatttaaaat
     1621 cctttgcagg ctatccatta atttataatc gtgataccat agggatactc ggaatgttca
     1681 gcgaaaagaa acttaacctt gccgattttg aaatcctagg aatattttgc agtcagatct
     1741 caagagagct taaaagtttt tttgatgcac aagaattctt gtcagttaag taatatcttt
     1801 ccgtattatc ttctctataa tgaaagactc gatagttcaa tttgactatc gctagtgata
     1861 catgatagca cttttggtgt gcaatgtatt tcaagtattc aataagaaat taaacataat
     1921 atagtatttg gaagaaaatt attctgttcc aatcttcgta atctatatct tattgctctt
     1981 tctgttattc tataccctat atttttgagg ttatttgcaa tatcaacagc agggatacgt
     2041 gcgttcttac tgaggctaga aaggattacc ttatcaat
//
LOCUS       DASPFX010000311         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_924685, whole genome shotgun sequence.
ACCESSION   DASPFX010000311 DASPFX010000000
VERSION     DASPFX010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_924685"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VD694_06755"
     CDS             complement(<1..413)
                     /locus_tag="VD694_06755"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HXW12442.1"
                     /translation="MSRLFIRAAIFFFIVASFMISQTIHPTFGQTSNSCADTSIKGLT
                     ASGSTQNFPPNNVIDKNFNTVWSYYGKGSWIQLDLGSNKNICAVNIAWYKGDVRQSNF
                     VISTSTDGTSYKNVLSSKSTGNTLSFDKYTIPSTSA"
     gene            complement(767..1825)
                     /locus_tag="VD694_06760"
     CDS             complement(767..1825)
                     /locus_tag="VD694_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HXW12443.1"
                     /translation="MKSAQIIKIKQKLSIVDLPDPKPRDTQVLVRIEASGVCHSDIHL
                     WEGGYEGAAGTFLKVEDRGVKFPITPGHEISGKIESIGESVSGFSVGDRVVVYPWIGE
                     GSCPACRVAQENLCDNPRTIGIYRDGGYSELVLVPNFRYLVKIENMDVNSSASLACSG
                     LTAYNAVKKATVGPGESIVIIGAGGLGLMSVQIARAITNSTIVVVDVDDKRLTEAKKL
                     GAHEVVNSSKVDPVEDIKRLTNSLGAEAVIDFVNNNRTAPLSINMMRKRGKLVMVGLF
                     GGALELSLPVIPLRGFTITGAYTGSFNDLVELVNLSKTGKIKSVVNRTYELDDANQAL
                     DDLRAGKIVGRAVLNPNN"
BASE COUNT          749 a          472 c          412 g          819 t
ORIGIN      
        1 gcagatgtcg aaggtattgt atatttgtca aatgataacg tgttaccggt actcttagat
       61 gataatacat tcttgtatga agtaccatca gtagatgtac taataacaaa attactttgc
      121 cttacatctc ctttgtacca tgcaatattt acagcgcaaa tattcttatt tgatcctaaa
      181 tcaagttgga tccaagagcc tttaccgtaa tacgaccaga ctgtattgaa atttttatca
      241 attacattgt ttggtggaaa attttgtgta cttccacttg cagtaagccc tttgatactt
      301 gtgtcagcac atgaatttga tgtctgcccg aaagtcgggt ggattgtttg tgagatcatg
      361 aagctggcca ctataaagaa gaatatggct gcccttatga ataatctaga caatgcttac
      421 tgacccccct cagttctgtc cgttaaagcg atactgttat catcggattt ttctaattca
      481 acagttgtca agtacatata atatattaaa ttgtaatgat gaatcatcgc aaaattattt
      541 tataatatgt tatttatgca agactaagat ttgtacctat agtacgttat gagtcagtta
      601 aacataatag tttttaaaaa atatctacaa tatttatcta ttgtaaatag tgttactctt
      661 tagagtaaat ttgtgtagaa aaatgaaact aaaaaattgt ctagaagata tgtaaattga
      721 gtctacaaga atagttgaga tgttgtaaat atctaatttt acaactctag ttattagggt
      781 tcaatactgc acgacctact atcttgcctg cacgcaaatc atcgagagct tgatttgcat
      841 catctagctc gtaagttctg ttcactaccg actttatttt tcctgttttt gatagattga
      901 caagctcaac taaatcattg aaactgcctg tatacgcgcc tgtaatggta aaacctctca
      961 atggtattac gggtaaactc aactctaatg caccaccaaa aagtccgacc attacaagct
     1021 tgcctctctt tctcatcata ttaatcgaaa gtggcgctgt cctgttgttg tttacaaaat
     1081 ctattactgc ctctgcaccg agtgaattgg taagcctttt gatatcttcc acaggatcta
     1141 ctttagatga gtttaccacc tcgtgagctc ccaatttctt tgcctcagtt aatctcttgt
     1201 catcaacatc taccaccacg attgtggaat ttgttattgc tcttgcaatt tgtaccgaca
     1261 taaggcccaa cccgccggct ccaattatca ctattgattc tccaggacct acagtcgctt
     1321 tcttgactgc attatatgca gttaaacctg agcacgctag tgatgcagaa gaatttacgt
     1381 ccatattctc aattttcaca agatatctaa aattaggaac cagaactaat tcagaatacc
     1441 ctccatctct gtaaatacca attgtccttg gattatcaca gagattttct tgagcaactc
     1501 tacaagcagg gcatgagcct tctccaatcc atgggtatac tacaactcta tctccgacac
     1561 taaaaccgct aacagattct ccaatggact ctatttttcc agaaatttca tgtcctggag
     1621 ttattggaaa cttgacacct ctgtcttcaa cctttaagaa agtacctgcg gctccttcat
     1681 atccgccttc ccaaagatga atgtcactat gacatacccc agaggcttca attctaacaa
     1741 gaacttgagt atctctgggc tttggatcag gcaagtcaac aatagaaagt ttttgcttaa
     1801 tcttaattat ttgagcagac ttcatttcaa tattgaggta ttctacatgg tattaaaaga
     1861 atttcacttt ccattcgaat ttttttcgtt acaaagagca tttggttgac gcctgttgaa
     1921 taagaaagac aaatttcaaa cagactttaa gtaaaattac aaatttatct tcaaggcttt
     1981 ttaatatgga ttgggtgcta atgaggtgaa ggaagagccg tctgattatg ctatgaagag
     2041 ggttatgagt gccgaagcat ccaacaaatt ttcatagcaa ttttttttaa tgcgatacgt
     2101 attccctttc ctcaggtgtc cttaatattg atgttttttc atcatggttt ttttgatatc
     2161 gcaacctaga tataatgaaa aatattctat tcataaattc agatttaacg tagtaacgca
     2221 aactcagttc ttttattagc acatattcct cctcaatcta cttatggatt gtatggtgtc
     2281 gttttatgac aataaatgtc aaacgcaaaa aacgtgttaa tgcttgtagt tctgtctgca
     2341 ggaatgttga cattgctaac aggatcaggg gtatcacagg tacaaccagc atttgctgac
     2401 gatgacgaag atgaatgtga agacaatggt gacttcaatt gtaacgaaga aa
//
LOCUS       DASPFX010000312         4143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_215421, whole genome shotgun sequence.
ACCESSION   DASPFX010000312 DASPFX010000000
VERSION     DASPFX010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215421"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..354)
                     /locus_tag="VD694_06765"
     CDS             complement(<1..354)
                     /locus_tag="VD694_06765"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12444.1"
                     /translation="MVNRKGRSIPIKKILVPVDGSEISFKAANYATHFAKLANAQLIP
                     LNIIEDVKQGGAIGLQERYGNISLVKAFKKAKKQSAEESLKKIQNLAKKLGVKVKGVI
                     LDADGKNEKKMVTEYA"
     gene            complement(688..861)
                     /locus_tag="VD694_06770"
     CDS             complement(688..861)
                     /locus_tag="VD694_06770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12445.1"
                     /translation="MVIRSTSAAEQQPQTNIFPSNPFKGKYTDSGVDIIRNYSLEYDC
                     TAVIFILVDIGIL"
     gene            1158..2177
                     /locus_tag="VD694_06775"
     CDS             1158..2177
                     /locus_tag="VD694_06775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12446.1"
                     /translation="MVKRVPIVISFLLVISIVLIPNVQKVSSDGLFEETLPPASIGDR
                     VASLYTKISPPILTSDAMQNAFLQLRLFDSNTGNNITNVNYFLTINKGDEVLFRELFY
                     SKQGPLTLKFQPSEGPIRTFGTTEPFLGGWTSDTGDISIVGPVLSEGGLYHFAIEIFG
                     IDNVRNIFQPENAPRFDSYLSIGDVHTANVTYANKDYNSTLISYYDKAQNFTFEPENL
                     KVKWEMPFNWNVSRIKANNIFVHEEISIPKPSPFANQSYSGQVNGIPLPAKMLMVDPT
                     NSSRDVVHFMIPKDGIISLAENVNRNGTATSGLMKFELKPGGNLSSRGSIMNMMNMNT
                     SSMSS"
     gene            2336..2884
                     /locus_tag="VD694_06780"
     CDS             2336..2884
                     /locus_tag="VD694_06780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12447.1"
                     /translation="MKNSKMQITTLVTIIITALGSTSMLFASSLQYSNAQEEKNVVRD
                     SQTILLEGKTLPSNDYIHLYDTTPYLIKLGHIAAKLPCDSNNKTSLNVLIGQAPALKP
                     AELELVKELSKPGTMCIYHVDVESGPQGVNPITDIALQNPTDKEVKFGPTATVVIGVD
                     EISPVTITGESKGNMSMGNSTH"
     gene            2995..3987
                     /locus_tag="VD694_06785"
     CDS             2995..3987
                     /locus_tag="VD694_06785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12448.1"
                     /translation="MDNNLLNIFFLILVAVLVTYIFINSDRSIVIAYSKFDESLKYLQ
                     FLYNGSIGFHTLNIVQSYNNSDIDVFGIRKLYESKPDTFEWYMNMVNPQEDPYLYNYN
                     KMVKNPDGSYSIGNFSRLSVYSKDGIGYTEGSMETYNFTKIHLKGYWYKPNDWKNVEI
                     TGEYRYRGGNGQGITHYVRSEDHSLLHNGCGASSYKNKIYFDGTSNFNKEQTHPFSWK
                     SSHLEHNYGNLKDHWFGFKTVVYNLPTGHVKLENWLDVFNDNNWTKIGQFIDEGGWGK
                     NGTKCGGRSDQILTWGSPMVTFRWDDLSIDFRNLSVREISPVIQDTTTREILTN"
BASE COUNT         1363 a          744 c          741 g         1295 t
ORIGIN      
        1 cgcgtattct gttaccatct ttttctcatt ttttccatct gcatccagta taacaccttt
       61 tacttttact cctaacttct ttgctaaatt ttgtattttc tttaacgact cctcagcgga
      121 ttgctttttt gctttcttga aggcttttac aagagaaata ttaccatatc tttcctgcaa
      181 gcctattgca cccccttgct ttacatcttc aattatattt aatggaatta attgagcatt
      241 agccaacttt gcgaaatgag ttgcataatt tgctgctttg aaagatattt ctgacccatc
      301 aacaggaacc aaaatttttt taataggaat agagcggccc ttgcgattta ccatataact
      361 tggttaaacg tacaggttaa aaaagaatct gttctgcgtg taacgcataa aatacgtgta
      421 tcctgtcgcc ttcgccttat tttcactgaa atatgattct tcttagttaa ctatattttt
      481 gaggtcagat aagactaagc aatgctcagt tttatgctgg tatgcaatac tgtagcaaaa
      541 acaacaattt ttcttaccac taattggtat gatgaactcc ttcttagact gctgaaaagt
      601 tttttcatca ttctatgatt tcagaaagta tttgatgtgt acgttgcctt tcaacaaatt
      661 aagactttat ccataacggg cgtgacgtta caggatccct atgtctacta atatgaatat
      721 gacggctgtg cagtcgtatt ccagtgaata attacgtatg atatccacac cagagtcagt
      781 gtatttaccc ttgaatgggt tggaaggaaa aatgttggtt tgtggctgtt gttcggcagc
      841 tgaagtactt cgtattacca cactagtgga ttcattccca taaactgagt gatttggcta
      901 aaatattatc actgttaaga tgataatgcg tgcagatagc aaaagccaac attgaacctg
      961 accgtctgac ataatgctat atctcaagat ttttattgtt tttatttgat ctaaaataaa
     1021 ttcttgggaa gaattcaaga attttataac taatgttatg gcgagttcct cattttctgg
     1081 tctgactacc gtgttccacg tttaatagaa ctcgtggaaa aatcacgtat aaattacctt
     1141 ttacttgcca aaaagatatg gtaaaacgtg ttcctatagt tatttcgttt ttactagtca
     1201 taagtattgt gttaattcca aacgtgcaaa aagtgtcttc tgacggacta tttgaagaga
     1261 ctctcccgcc cgcttcaata ggggatagag tagcaagcct ttatactaaa attagtccac
     1321 caatcttgac gtccgatgca atgcaaaatg ctttcctcca attaagatta tttgattcaa
     1381 atactgggaa taacataacc aatgttaact attttttaac aataaacaaa ggagatgaag
     1441 tcttattccg tgaactgttt tattcaaagc aaggaccttt aacacttaaa ttccaaccaa
     1501 gtgaaggtcc gattagaacc tttggaacta ctgaaccttt cttaggtggc tggactagtg
     1561 acacaggaga tatctcaata gtaggtcctg tactctccga aggaggattg tatcactttg
     1621 ccatagaaat ttttggaatt gataatgtta gaaatatttt ccagcctgaa aacgctccga
     1681 gatttgattc gtatcttagt attggagatg tacacacagc caatgtaact tacgcgaata
     1741 aagactataa cagcacatta atctcctatt atgataaagc tcaaaatttt acatttgagc
     1801 ctgaaaatct gaaagtaaaa tgggaaatgc cttttaattg gaatgtttca agaatcaaag
     1861 caaataatat ttttgttcat gaagaaatat ctattcccaa accaagtcca tttgcaaacc
     1921 aaagctactc aggacaggtt aatggtatcc cattaccagc aaagatgctt atggttgatc
     1981 caacaaattc cagcagagat gtagttcatt ttatgattcc taaggatgga ataatatcat
     2041 tagcagaaaa cgtaaacagg aatggaactg caacaagtgg acttatgaaa tttgaattaa
     2101 agccaggagg caaccttagc agccgtggaa gcattatgaa catgatgaat atgaatactt
     2161 cgtcaatgag ttcctgatca taatcttttt tatacaaaga tttgagtcaa gaaaaagtga
     2221 tgaccaaatt gggaaacaat gatcgttcgt aatggcatga tacagaagat taatgcatac
     2281 aatatgaatt taaataaaat ataatgttaa atacaatgac tcgcttgcat tcacaatgaa
     2341 aaattccaag atgcaaataa ccactttagt aacaattata attacagctt tgggatctac
     2401 ctcgatgtta tttgcaagtt cgctgcaata ttctaatgct caagaagaaa aaaacgtagt
     2461 aagggactct caaactattc tactcgaagg taagaccctt ccctcaaatg attacattca
     2521 tttgtacgat acgacgccgt atctaataaa gctgggtcac atcgctgcaa agcttccttg
     2581 tgacagcaat aataaaacat ctttgaatgt acttattggt caagcacccg cattaaagcc
     2641 tgcggagttg gaattagtta aggaattatc taaaccagga acaatgtgta tttaccatgt
     2701 agatgttgaa tccggaccgc agggcgttaa tccgattact gacatagcac tgcaaaaccc
     2761 cacagacaaa gaagtaaaat ttggaccaac tgcaactgtt gtcattggtg tggatgaaat
     2821 ttcgccagtc actataacag gcgaatccaa gggaaatatg tcaatgggaa acagtacgca
     2881 ctagcaagct gtccctttat gcttttattt tcaatccttc ctttaggctc atcactacaa
     2941 ccagagtctc cagtagtaac gaaaattcac taaaaaaata ccatagtgga tcaaatggat
     3001 aataatttac tgaatatatt ttttttaatc ctagtagcgg ttctggttac atatattttc
     3061 ataaacagtg acaggtcaat tgtcatagca tactcgaaat ttgatgaatc gctcaagtac
     3121 ctgcagtttc tttataatgg atcaatagga tttcacactc taaacatcgt tcaatcttac
     3181 aacaatagtg atattgatgt tttcggaatc aggaagctct atgaaagtaa gcctgatacc
     3241 tttgaatggt atatgaatat ggtaaaccca caggaagacc catatctata taattataat
     3301 aaaatggtaa agaaccctga cggcagttat agtataggaa acttctcaag attatcagtc
     3361 tattcaaagg atggaatcgg atatactgaa ggtagtatgg aaacttacaa tttcactaaa
     3421 attcatttga agggatattg gtacaaaccc aacgattgga aaaacgtaga gattacagga
     3481 gagtaccgtt acagaggagg caacggacaa gggataacac attatgttcg gtcggaggac
     3541 cactctctat tacataatgg ttgtggtgca tcaagttata agaataaaat ctatttcgat
     3601 ggaacaagca attttaataa agagcaaact catccgttct cttggaagtc atctcatttg
     3661 gaacataact atggaaactt gaaagaccat tggtttggct ttaagactgt ggtatacaac
     3721 cttccgacag gtcatgtaaa actcgaaaat tggttggacg tatttaatga taataattgg
     3781 acaaagattg gacaatttat cgatgaaggt ggttggggta aaaacggaac taaatgtgga
     3841 ggcagatctg atcaaatctt aacatggggt tctccaatgg ttactttcag atgggatgac
     3901 ctttcaatag attttagaaa cttgagtgtt agagaaattt caccagtaat tcaagacaca
     3961 acaactcgtg aaatcctgac aaattaggtt ttcacctgtc agtctatctt tgactttcag
     4021 atttaaccat tagatcctgt ttttcaagta ttttcagacc tttcgttgca ttagaatatc
     4081 cgtccggcaa atttcaaatc aaatcctttt ccgtaacaga tgcgaacgcg ttacaggatc
     4141 cct
//
LOCUS       DASPFX010000313         2120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_645236, whole genome shotgun sequence.
ACCESSION   DASPFX010000313 DASPFX010000000
VERSION     DASPFX010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_645236"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VD694_06790"
     CDS             <1..366
                     /locus_tag="VD694_06790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12449.1"
                     /translation="YIFLSSVESFSRQDAIVIILKTAHKKRDYEQIYSKLQAQLTMSQ
                     FMKFIFELMKHDLLKLTGNQTRYVITPKGMQYLQIHDELTGQMRSEPARNSYIFENCK
                     PVFKLASFFKKKNNILENI"
     gene            442..>2120
                     /locus_tag="VD694_06795"
     CDS             442..>2120
                     /locus_tag="VD694_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HXW12450.1"
                     /translation="MVDNQKIQNIVESSKGSPRVITEESSKEILGEYGIKVPKYALVT
                     SSDEAVQKSKEIGFPLVAKIVSPDILHKTDVGGVKVGLNSEEEVKKTFDDMFNRLKAK
                     FDVKGVLLEKMVPKGVELIVGLQNDSQFGPSIMVGLGGIYTELFKDVSFRVLPVTKNE
                     AIKMLESLRGKDILKGFRGSKPVDLDMLSEAIVSIGNLGVDMAGKYESIDFNPVVVYP
                     DSYYVVDAKIILKEKSSDDAISKASPDSSYMDLFFNAKSVALIGASPEEGKIGNSVME
                     SLVKHDYKGKVYPVNAKGYPEIMGVKAYKSLMDIEDPVDVVIVTVDLKFVPDLLVECG
                     KKNIHNMVVISGGGKELGGERAAIEKRVQDLSRELKVRIIGPNCIGIFNGENRLDCAF
                     QGHLRMLRPKQGNVSFLSQSGTVGIAFMETSDAFGLSKMISYGNRSDVDEADMIHYLA
                     QDPSTNVIGLYVEGLGDGRKFMNSAKNVIKQYQKPIVVFKNGRSTRGAKQAASHTGSL
                     GGSFAVISGAFEQTGIISVDSYEELTSALKALTWQPVPKGNKIAMVTNGAGP"
BASE COUNT          716 a          331 c          473 g          600 t
ORIGIN      
        1 tatattttct tatcttctgt ggaatcattt agtaggcaag atgcaatagt tattatccta
       61 aaaacagcac ataaaaaacg tgactatgag cagatatatt caaaattgca ggcacaactt
      121 acgatgtcac aatttatgaa attcattttt gaattaatga aacacgatct tttgaaattg
      181 acgggcaatc aaacgcgcta tgtcattact ccaaaaggaa tgcaatattt acaaattcat
      241 gatgaattga ctggccagat gagatcagag cctgctagga attcatatat ttttgaaaat
      301 tgtaagcctg tcttcaaatt agcaagtttt tttaagaaga aaaataatat tttggaaaat
      361 atctaacata atgcagacat aacttaatgt gcagcttgag taaagttaat taaaaacaaa
      421 ggcaacattt ttttcataaa catggttgac aatcaaaaga tccaaaatat agtagagtct
      481 tcaaaaggca gtcccagagt cataacagag gaatcctcga aggaaattct tggtgagtat
      541 ggaatcaaag taccaaaata tgcgcttgta actagtagtg atgaagcggt acagaaatca
      601 aaagaaattg gattcccgct agttgctaaa atagtttctc cggatatttt acataagaca
      661 gacgttggcg gtgttaaggt aggtctaaat tccgaggagg aggttaagaa aacatttgat
      721 gatatgttta atcgactaaa ggcaaaattt gatgttaagg gagtattatt ggaaaagatg
      781 gttccaaaag gtgttgaatt gattgttggt ctccaaaatg attctcaatt tggcccctcg
      841 ataatggtgg gtcttggagg catttataca gaattattca aggatgtttc cttcagagta
      901 ctgcctgtca cgaaaaatga agcaataaag atgttggaat cgctaagagg aaaagatatt
      961 ctaaagggat tcagaggttc aaagccagtt gatttggaca tgttgagcga agcaatcgtt
     1021 agtattggca acttgggagt ggatatggct ggaaagtacg aaagtattga ttttaatcca
     1081 gtcgtcgtct accctgatag ttattatgtt gtggacgcaa aaattatcct taaggaaaaa
     1141 tcatcagatg atgcaatctc aaaggccagc cctgattcaa gctacatgga tttattcttt
     1201 aacgccaaat ctgtagcgtt aatcggtgca tcgccagagg aaggtaagat aggaaattcg
     1261 gtcatggaaa gccttgtaaa gcatgattac aagggaaagg tctatccagt aaatgccaaa
     1321 ggatatcccg aaataatggg agtcaaggca tacaagagtc tcatggatat cgaagaccct
     1381 gttgatgttg ttattgtaac tgtagatctt aagttcgtgc cagatctact tgtagagtgt
     1441 ggaaaaaaga atatccataa tatggtagta atatctggag gtggtaagga acttggagga
     1501 gaacgtgccg ctattgagaa acgtgtccag gatctttctc gtgaattaaa agtcagaata
     1561 ataggtccaa attgcattgg catcttcaat ggagaaaaca gattggattg tgcatttcaa
     1621 ggccatctaa gaatgctcag acctaagcaa ggaaatgtat catttctatc acaaagcggt
     1681 accgttggaa ttgctttcat ggagacttct gacgcgtttg gtttgagcaa gatgatttca
     1741 tatggtaaca gatcggatgt tgatgaagct gacatgatac attatttggc acaggatcct
     1801 agtaccaatg taattggttt gtatgtagaa ggacttggag acggtcgcaa gtttatgaac
     1861 tcggcaaaaa atgtcataaa gcaatatcaa aaacctatcg tggttttcaa aaatggcaga
     1921 tctacccgag gagcaaaaca ggcagcctct catacaggtt ctcttggagg ctcgtttgca
     1981 gtaataagtg gtgcctttga acaaactgga ataatttccg tggattctta tgaggagtta
     2041 acttcggctc tcaaggcttt aacctggcaa ccagttccaa aaggaaataa gatcgcgatg
     2101 gtaacaaacg gggcaggacc
//
LOCUS       DASPFX010000314         2191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1641095, whole genome shotgun sequence.
ACCESSION   DASPFX010000314 DASPFX010000000
VERSION     DASPFX010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1641095"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VD694_06800"
     CDS             complement(<1..302)
                     /locus_tag="VD694_06800"
                     /inference="COORDINATES: protein motif:HMM:NF012274.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde 3-phosphate dehydrogenase
                     NAD-binding domain-containing protein"
                     /protein_id="HXW12451.1"
                     /translation="MVTKIAINGFGRIGRCFLRAAMGDKEFGKIANIVAINDLTDPKT
                     LAHLFKYDSTFGRYQGAVEAKDDEIIVDGNALKVFAEKDPSKLPWKDLKIDIVIEST"
     gene            complement(747..1169)
                     /locus_tag="VD694_06805"
     CDS             complement(747..1169)
                     /locus_tag="VD694_06805"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12452.1"
                     /translation="MYNNLKVARIMVAVDGSENSKRAGAYAVNLGLDLHADVVALHVV
                     PVGKPFPEENLEKGTKHDYAYLDKIGQQSNSAGVKLEIEILRAESPVVTEIVEYANKK
                     NIDLIVIGIRSVSEFRFMLGSTATGVVETARCPVLVVK"
     gene            1371..1826
                     /locus_tag="VD694_06810"
     CDS             1371..1826
                     /locus_tag="VD694_06810"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12453.1"
                     /translation="MTVRRILVAVDGSKPSIDASVQAIDIAKKLGAELIALYVISPDT
                     RYHYLEDTLTPKLPSAFKEVLMMAMQRGEKHVNNVRRMAKQKNIKVKTDVIVGISSVV
                     KEILEYAEKNKIDMIVIGSRGLSGFKKMLLGSVASGVVTYAHCPVLVAK"
     gene            complement(1851..>2191)
                     /locus_tag="VD694_06815"
     CDS             complement(1851..>2191)
                     /locus_tag="VD694_06815"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HXW12454.1"
                     /translation="AYAVSDTFGWKEGLEKKFSQAKSFYSVIVASTLIGVWITFSQIN
                     PIQALILAAVINAVVTVPILFLVMRLANDKNILEDRINTRFSNIIGWFTFALMSVSVI
                     VMFVSFFIWS"
BASE COUNT          704 a          402 c          381 g          704 t
ORIGIN      
        1 gtggattcaa taacaatatc gattttcaga tctttccaag gtaatttcga gggatctttt
       61 tcagcaaata cttttaatgc atttccatct acgattattt cgtcatcttt agcttcaact
      121 gcaccttgat acctgccgaa agttgagtca tacttgaata aatgagcaag tgtctttgga
      181 tccgttaaat cgtttatcgc aactatgttc gcaattttac cgaattcctt atcgcccata
      241 gcggctctta aaaaacatct tccaattctt ccaaaaccat tgattgctat ctttgttacc
      301 aagaatacta ttcgacaatc ggtataataa gaagtaatag caatccagta cattaaattc
      361 ttatcatgag cacacactca acggaaaacg tctactgtag tcgggagaag ctgggtatga
      421 caatcttact ttggatgtac atatgataaa tacgtatagt aataatcctt tatcatttcc
      481 tcgccacaaa atctacattt gagctttaaa taaaggagct gatagcatgt cctacaatat
      541 tttttcttat tgttttcttc aactatgatt tcgtaccata atcgtttttg tggcccacat
      601 ccattgcatt tactttctcc tagcatcttg taaccacatc tagaatgtga aattaaaggt
      661 ttgaatatcc attgaaaaag acttgaatct ttttacgatc ttgaatagaa attaatgtag
      721 tgtgtaattt caattttaga gtaatactat tttacaacta atacaggaca acgagcagtt
      781 tctactactc cagtagcagt gctaccaagc atgaaacgga actctgaaac gctcctgata
      841 ccgatgacga taagatctat atttttcttg ttcgcatact ctactatttc agttacaacg
      901 ggagattctg ccctaagtat ttctatttca agctttacgc cagcagaatt ggattgttgc
      961 cctatcttgt caaggtatgc ataatcatgt ttagttcctt tttctagatt ctcttccgga
     1021 aaaggtttac caacaggtac aacatggagt gccacgacgt ctgcatgaag atctagaccg
     1081 agattaacgg cataagctcc tgctctcttt gaattttctg atccatccac agctaccata
     1141 attctcgcta ctttgagatt gttgtacata tatctctcag gttagtagaa gagaccttaa
     1201 tttctttttg tgggccaata gtattttcat taataatttt aagaaaaagt ggttaaattg
     1261 aataaattca aatgtaaaat cttaggtggc tcgggtttaa gccaactctt agaaatcaaa
     1321 acggcatgta tttcaaaata cctatataag aataatctta accgacatta ttgactgttc
     1381 gaaggatact tgtagcggtg gatggttcta aaccttcaat tgatgccagt gttcaagcta
     1441 tagatatagc aaaaaaactt ggtgcagaat taatcgcatt gtatgttatc tctccggaca
     1501 ctagatacca ctatttagaa gatactttaa ctccgaaact acctagtgcg ttcaaggaag
     1561 tcttaatgat ggctatgcaa aggggagaga agcatgtaaa taatgtaaga cgaatggcga
     1621 agcaaaaaaa catcaaggtt aaaacagacg taattgtcgg tatctcatct gtagtgaagg
     1681 aaatattaga atacgctgag aagaacaaaa tagacatgat tgttatcgga agtaggggtc
     1741 tctcaggatt taagaaaatg ctcttgggta gtgttgctag tggtgtagta acgtatgcac
     1801 actgcccggt actagttgcc aaatgatttt taattactag ctataaaagt ttatgaccaa
     1861 ataaaaaacg aaacaaacat aacaataact gaaacgctca tgagtgcaaa agtaaaccat
     1921 ccaataatat ttgagaagcg tgtattgatc ctgtcttcta gtatgttctt atcgttggca
     1981 agtctcataa ctagaaaaag aatcgggacc gtaacaactg cattaattac tgctgctaat
     2041 atcaatgctt gtattggatt aatttgtgaa aatgtgatcc aaactccaat taaggttgat
     2101 gctactatca cggagtaaaa tgattttgcc tggctgaact ttttttctaa tccctctttc
     2161 caaccaaaag tatcagatac tgcatatgcg g
//
LOCUS       DASPFX010000315         2085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1641416, whole genome shotgun sequence.
ACCESSION   DASPFX010000315 DASPFX010000000
VERSION     DASPFX010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1641416"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..684
                     /locus_tag="VD694_06820"
     CDS             <1..684
                     /locus_tag="VD694_06820"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HXW12455.1"
                     /translation="RNDYLKFLTNVGGAIKKIISDEGSFFINIGSKPSDPWMPLDAAN
                     ALRQHFTLQNVIIWVKSIAIPKSDVGKYPAIISDIAVGHFKPIISDRYLNDCSEFIFH
                     FTKNGNVKLDKLSIGVPYQDKTNIGRWKAATKDRRDRGNTWFIPYETIWDKKQRPHPS
                     TFPSKLPEMCIKLHGVNKCKVVLDPFMGIGSTALASIRSGVSCIGFDIDKSYLEICKE
                     RILSSLSAQ"
     gene            843..1040
                     /locus_tag="VD694_06825"
     CDS             843..1040
                     /locus_tag="VD694_06825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12456.1"
                     /translation="MSNVGTVTLIIVLAIISYSCMEWTDITSNVYAQGDTNHNNSSLY
                     QLANNGTLAKILSGNLVNYLN"
     gene            1287..1697
                     /locus_tag="VD694_06830"
                     /pseudo
     CDS             1287..1697
                     /locus_tag="VD694_06830"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
BASE COUNT          696 a          342 c          367 g          680 t
ORIGIN      
        1 agaaatgatt atttgaaatt cctaacaaat gtgggtggag caattaaaaa aattatatca
       61 gatgagggat cttttttcat aaatattggt agcaagcctt cagatccatg gatgccttta
      121 gatgctgcaa atgcattaag acagcatttc acattacaaa acgtcatcat atgggtaaag
      181 tcgattgcca ttccaaaatc tgacgtagga aaatatcctg ccataatatc agacattgca
      241 gtaggacact tcaaaccaat cattagtgat agatatttga atgattgctc cgaatttata
      301 tttcatttta ctaaaaatgg taatgtcaag ttagataagc tttctattgg agttccttat
      361 caagataaaa caaacattgg tcgttggaag gccgcaacaa aggacagaag agatcgaggt
      421 aacacttggt ttataccata tgagacaatt tgggacaaaa agcagagacc acatccttct
      481 acttttccaa gtaagctacc agaaatgtgc atcaaattac atggagtgaa taaatgtaaa
      541 gtagtgttgg atccttttat gggaatcggc tcgactgcat tggcatccat aagatcaggg
      601 gtttcatgta ttggttttga tatagataag agctatcttg agatttgcaa agaacggatt
      661 ttgagctctt tatccgctca atgaattacc ttctacgaga ttatttctgt caataagaat
      721 cttcaattta ggatactgtt tctaaacata tttacaaaaa atgaattttg ttcatatcat
      781 ttacacattt gaaacattca aacttaaaaa ttatatacat gttgtcatgc actctgtaag
      841 atatgtcgaa tgtaggtacc gttactctaa ttatagtatt agctataatt tcttacagtt
      901 gcatggaatg gacggatatt acaagtaatg tgtatgccca aggcgatacc aaccataata
      961 actcctcact ttaccagctt gcaaataatg gcacactcgc aaagatttta tccggtaatt
     1021 tagtaaacta tctaaattaa tcggcatcaa tactgcagat aacaagtatc atacaaagcg
     1081 ttaacaatgt acaatattca gacaaaatca atagtagcct acatggaatt tctgaaagtg
     1141 atgacgttga aaaacgacaa atagcaaata gcatattgga acataccgat acttttgagg
     1201 caattgcgta tttacttccc aatggagata tgtatatgga agaaccatac gaccgataat
     1261 taggtcaaag tagagataac tttgcattta gggattacta taaaggagct gtaaatacaa
     1321 gacaagcatt tcttggagat gttattgtgt cgtcttctac tggagagaaa gtagcactta
     1381 tttctgttcc aatatatctg aaaaagggtt catcattagt aggtatatgg agtggggtgt
     1441 tagatcttga taactttaac aaaattctca gcgctttgag tcttccggat gatataagag
     1501 tagtattcat ggatggtaat ggtcaaaaag taactgattc aaattctctt ctatcaaaca
     1561 agtctgaatc ttttgttgac ctcaagagct tcaactccgc aaaatctgga atatccggaa
     1621 atctttcgga agtaattaat ggtataaaat attcaacctc ttatgcgccg gcaatatttt
     1681 ttctaaaact tggatagttc tggtaatgat acagtctgat taaacagtta gtcttttgtt
     1741 atacaatata atacgatcgt aattcgacca taattatcaa cattgttatt ttggtaactt
     1801 tgctggtaga taatcaagat ctaatttatt taatttaatt caaatccatt tttgggcgta
     1861 ttatctattt gattacttgg ataggcaaat gatgtgatat taaaaagaaa gattggggga
     1921 atctatatga aatcagttac atagtaggtc taatcttcat cttcgtcttg atgatcgtct
     1981 tcatcttcgt cttgatgatc gtctttatcg cctactacac tcacttgcac attctcagtt
     2041 tgatcatctt cattctcatc gcccactgca ctcacttgag tattt
//
LOCUS       DASPFX010000316        11032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2120931, whole genome shotgun sequence.
ACCESSION   DASPFX010000316 DASPFX010000000
VERSION     DASPFX010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2120931"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..667
                     /locus_tag="VD694_06835"
     CDS             143..667
                     /locus_tag="VD694_06835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12457.1"
                     /translation="MLLSKKPEIKNIEDTKEQIINIILNQQNQIKSNLKTSVSVVQNL
                     VSEITEFNDSWTKVPNIYRIAWISSNDGNTVKNMKFEDNIELPNLNHDLELIMKMLNH
                     MREEKKLKVSNMPLFLHPDEISIAQKEGRLPHGNINIISQIAIVFQKARVKYVGIIID
                     RNYLILQDRLINIF"
     gene            complement(851..1144)
                     /gene="albA"
                     /locus_tag="VD694_06840"
     CDS             complement(851..1144)
                     /gene="albA"
                     /locus_tag="VD694_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006325 - chromatin organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein Alba"
                     /protein_id="HXW12458.1"
                     /translation="MSSGAEIRRANNVILIGKKPLMTYVTATLVQLASEPTVIIKARG
                     KSIARAVDVAQIIAKRMDNVGYKIGSVKIGSQIIESDDGKQRNVSTIEVQLSR"
     gene            complement(1413..1640)
                     /locus_tag="VD694_06845"
     CDS             complement(1413..1640)
                     /locus_tag="VD694_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12459.1"
                     /translation="MEYPVVVENDGIKIKPENMDVDKMYYCIYDNKVYIFYKDEESLT
                     HCYEVDDTKVVQEIVANPDNLEDILLKHSKE"
     gene            complement(1700..2860)
                     /locus_tag="VD694_06850"
     CDS             complement(1700..2860)
                     /locus_tag="VD694_06850"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HXW12460.1"
                     /translation="MTAKAQSDEKSEKSEDSKKSVDSKKSEADSSNNMEMNVPVAKMI
                     YQNKSYEMSPFVVLDNENLQRINFPHLPDDFEPEVTISPEDSITFSFITKPREINAFF
                     VDYDADTTEMTPLHRVGKTQFSFGDVYGPNTLELRVIYPDGKYVTYTCLIEVEKPEVK
                     EVALDSSNISTMSTDDNINIMSTDDVNNMASTEIPNSNNDNSFQSFELNDPDSSGFGQ
                     VSPTEQHVVNQYDNLVDPTNGQQKELDFTNSVQESTNTNRCEYNEIPIMDVQTDTNNG
                     NNNTNGNSTDSQKPRWTALDLGQEQNICGLKVSFANLDNEIKFFTLEFSNDGENYTPA
                     EYYSSTGTNSPSEIYDLKEGPVKARFIKITELDITESIQWISDLTVLGNMDL"
     gene            3171..4304
                     /gene="dinB"
                     /locus_tag="VD694_06855"
     CDS             3171..4304
                     /gene="dinB"
                     /locus_tag="VD694_06855"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF002677.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HXW12461.1"
                     /translation="MSENISLNEIEKRIIFHIDFDYFYAQCEEIRRPELRNIPSVVCV
                     YSGREEDSGVVSTCNYEARKYGVKAAMPIRMAKSKLKDVHSIFLPTDMPYYHEISTKA
                     MRIIQNYGELFEQVSVDECYMDFTKITNSDFDDAKIFAVSLQKNIKDQIKLTCSVGVA
                     PNKLIAKIASGINKPNGITVVRQEEAKQFISNCKIEDIPGVGPKTSKKLESLGIKSVS
                     DISRKSIFELRDALGYKIATFLVNASNGLDYSQIKIRGTSKQIGKIVTLKKDMTSFEH
                     VRLTVENLCKSVFENLENKRQAYRVLTVILILENLQHVSFSRSLKLYSASFDELHKNS
                     LSILNEMVDNNSISLDNIRRVGIVISDLKDISGQDSLLNYFEN"
     gene            complement(4485..5441)
                     /locus_tag="VD694_06860"
     CDS             complement(4485..5441)
                     /locus_tag="VD694_06860"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HXW12462.1"
                     /translation="MDRRIAHTAEHAFIGSLQKILNKTLSVRKVEHKDTYNIVFIRRS
                     EVELDFEKITFAEKEVNRLILEGRKILNYSFSSLQEAKRMFPDLRANESRLENVDTIT
                     VIEIENHDLSACSMEHVDNLSECIFFLVTNMSMSGSDYEIRFMVGKNAMDEAVKITEK
                     INNICIQIGANYNTVEATIKKLYTEREQYHNILKKITIKLLVNVPTQTIDSQNVNLFT
                     TILHDMDWRTIQNFAGEKILSPRTIVILANVVDNDMAALIFARSEDISLDCAKIFEEL
                     RNDENIGSGGGKSNFINAKIIGSKSDKVVEELVNRSLKFISS"
     gene            complement(5450..6142)
                     /locus_tag="VD694_06865"
     CDS             complement(5450..6142)
                     /locus_tag="VD694_06865"
                     /inference="COORDINATES: protein motif:HMM:NF014612.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HXW12463.1"
                     /translation="MIESNDKEERAKRAKSRDMSESSLGIEENSMKIIESEIGTHGYN
                     ELQWKVVRRVIHATADFDFAKPDRNGIIFSTNAVENAFKAFEKKGHIVVDVDMVQSGI
                     NKKSVAKIGTSLICNISNREVIDMSKNQNKTRSTVAMRYSSKEINGGIVVIGNAPTAL
                     YEVINMINENAVKPALVIGIPVGFVSAAESKSDLLKTNVEYITNIGRKGGSPTASSII
                     NALMLLYISNLN"
     gene            complement(6135..6896)
                     /locus_tag="VD694_06870"
     CDS             complement(6135..6896)
                     /locus_tag="VD694_06870"
                     /inference="COORDINATES: protein motif:HMM:NF017944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin chelatase"
                     /protein_id="HXW12464.1"
                     /translation="MNKALLLIDRGSREPEAKEELAQLCTMIRNESEYAYVDHCFLEV
                     IPPYIEEGINKCISNNVDSITVMPYFLYPGMKLKDSVKRTARICYDRKIKVVITKPLS
                     YHTTLESLIRDRIHSAKEKNNVLLSNDKCDILVIGHGSSDRSARTAFVHTVKRLKPDF
                     RSVTFCFLELDEPRIANGIDKIISNNPSTVIIVPYFLHKGAHIKNDVIKDINSALEHY
                     NLNNIQVHVTEHFGVDPKLVELVLERAREAEQKVD"
     gene            complement(6898..7974)
                     /locus_tag="VD694_06875"
     CDS             complement(6898..7974)
                     /locus_tag="VD694_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HXW12465.1"
                     /translation="MSSRVAIVCITKNGINISRRIREKIPTASIYAQSKHKDSSDGII
                     WFEKNTKIMIEEIFKEYESIICIFSLGAVIRLISNLLKDKKTDPAVIVIDDKANFVIS
                     ALSGHLGGANSLTKSIAEFLNSTPVITTAADVNETIAVDLLGSDFKWRIENFENVTKV
                     SAHMVNEEKIGIYQDAGETRWWNKELPKNVTILDNIDELKSDDFKAGLIISDRIITDP
                     LVVNKSVIYRPKSLVVGLGFHWDTTLEEIEDGILKVLGENRLSLLSIRNLSTLNRGKS
                     PASLASFSDKHGIPLEFYDKEKLDKIMVPNPSDVVKKYEGTSSVSEASSILSSGGELI
                     VTKQKFPPNLTVAVSRINYSKVDI"
     gene            complement(8331..8891)
                     /locus_tag="VD694_06880"
     CDS             complement(8331..8891)
                     /locus_tag="VD694_06880"
                     /inference="COORDINATES: protein motif:HMM:NF015952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-dependent dephospho-CoA kinase family
                     protein"
                     /protein_id="HXW12466.1"
                     /translation="MSIPPEVLAELKKPLGKLILDSDITEKKIKKEIAGIKHKIITVG
                     DRSTERLVSFGIYPDLAIIDGIERRQEKEKILDNRMSELKAKNFTKISCINPAGTITK
                     EAINKIRFALTGEKDVLLHVIGEEDLLTLPACYFAPNDSLVCYGQPLEGLVLIKVNDS
                     IKRKAKELMKSINNKLLTGYDDVVAV"
     gene            complement(8875..9978)
                     /locus_tag="VD694_06885"
     CDS             complement(8875..9978)
                     /locus_tag="VD694_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HXW12467.1"
                     /translation="MVSIEQIMAKLQTIEDPELHKDIVSMGMIKDLTINDGKVGFTLE
                     LTTPACPFNSEIEESVRNSMMDLGIKDLDLKVTARVMEGRSISMDELLPGVKNILAIA
                     SGKGGVGKTTVSVNLALTLAKTGAKVGLLDADIYGPSIPLMLGLKNAPEVINNKIEPV
                     LAQGVKVISMGFFYEQSQQAGIYRGPIVAGIVKQFLTDVNWGELDYLIIDLPPGTGDA
                     PLTLAQTIPITGIIIVTTPQDVAMNVAVKAVGMFNKLNVPIIGVIENMSYLECQHCNN
                     KITIFGTGGGQKVSDQFNVPFIGEIPLHQQIMSGSDSGNPVTISEPNNNQAILFDKIA
                     RTVAGRISIIASELRDQEKAEIEHSKEQSVNTA"
     gene            10096..10701
                     /locus_tag="VD694_06890"
     CDS             10096..10701
                     /locus_tag="VD694_06890"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HXW12468.1"
                     /translation="MFAIIHMDDVVRIPPSMMKKSLNDTTMEILKEKYESMINPELGY
                     VIMIIDAKTNRVGKLVSGDGATFHKVSFKALTFYPKMQEIVEGEIVEITDFGAFVRIG
                     PTDALLHLSQITDDYLKSDVKQGVIVANQSAKSLKIGSKLRARVTAISLGKGSAMGKI
                     GITCRQPFLGALEWIEEEIKKAKNPAPAANNQKEKKGTVPA"
     gene            10701..10889
                     /gene="spt4"
                     /locus_tag="VD694_06895"
     CDS             10701..10889
                     /gene="spt4"
                     /locus_tag="VD694_06895"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor subunit Spt4"
                     /protein_id="HXW12469.1"
                     /translation="MAKELACKKCKAITIGKVCPVCKSTELSSDWSGTIVIFDSKNSL
                     VASTLQISTPHKYALKVT"
BASE COUNT         3423 a         1995 c         1813 g         3801 t
ORIGIN      
        1 tatacgagtc caagtggatt gaaattttct tgacctcaaa gtatcctagg cctagatgga
       61 gtttgttgat acctcgtaga cccatgggta ctcgtttaag atagtaattt atgaataagc
      121 aatattgaag aggttcacta atttgttatt atccaaaaaa ccagagataa agaatattga
      181 agacactaaa gaacaaatta taaacattat tttgaatcaa caaaatcaga tcaagtctaa
      241 tttaaaaaca tcggtttcag ttgttcaaaa tctagtttct gaaattacag aattcaatga
      301 tagttggaca aaagtaccta atatctatag aattgcatgg ataagtagca acgatggtaa
      361 tactgttaaa aatatgaaat ttgaagataa tatagaacta cccaatttga atcatgattt
      421 agaacttatt atgaaaatgc taaatcatat gagagaagaa aaaaaattaa aagtatccaa
      481 tatgccacta tttttgcatc ctgatgaaat ttcaatcgca caaaaggaag gcagattgcc
      541 tcatggaaac attaacatca tatcccaaat tgcaatagtg tttcagaaag caagagtaaa
      601 atatgtcgga ataattattg acaggaacta tctgatactt caagatagac taataaacat
      661 attctaatca ctcgtcaaga gtgaatgaat tccacttttt cattttgaaa tgttctcatt
      721 gatagtacta gattagtaat gaatgtgagt ccgattccaa ttgtggtata atttggagaa
      781 tatgtctttg cagggtgtct aaagctatcc tatttccaag atactataaa aataattaat
      841 gattttaatt ttatctagat agttgaactt caatagttga aacatttctc tgcttgccat
      901 catcagattc aattatctgt gaacctattt tcacggatcc aattttgtat cccacattat
      961 ccatccgttt ggcgataatt tgggccacat caactgcccg agcaatactt tttcctctgg
     1021 cctttataat aacagtcggt tcgcttgcca attgaaccaa ggttgctgtg acataggtca
     1081 tcaatggttt cttgcctatc aaaattacat tattggctct ccttatttca gcccccgaag
     1141 acatgtgtaa atgcagaaca caaaatccta aataaagttt atacaaattc aaaaattttt
     1201 gaacagtctt agctcaatct tgatgtttat ggtgagtaaa ctaaggtaag ccaagttatt
     1261 atatttagat tcaacagtat attacttcct aaaacaaatt gagacaaatg ttggtgggat
     1321 tattgtttca actccataat cccaccggta agttgtatgt aagaacattt gaaatttctt
     1381 tttgagtaat cgaatatgta ctaattttga tatcattctt tagaatgttt tagcaggata
     1441 tcctctaaat tatcaggatt ggcaactatt tcttgtacca ctttggtgtc atctacttca
     1501 taacaatgtg taagactctc ttcatcttta taaaaaatat agactttgtt atcgtaaata
     1561 caataataca tcttatcgac atccatattt tcaggcttga tttttattcc atcattttca
     1621 acaacaacag ggtattccac gtctacacca tctatttgag aaaataaatt ctatgcgaaa
     1681 tgatgaatgg tatttgtcgt tataggtcca tgtttcccaa tactgtgaga tctgatatcc
     1741 attgtattga ttcagttata tcaagctcag ttattttgat gaatcgcgcc ttgactggac
     1801 cttcctttag atcataaatt tcggagggtg aattagtccc agttgatgag taatattcgg
     1861 ccggggtgta attttctccg tcattagaga attcaagcgt aaagaattta atctcattgt
     1921 ctaagttagc aaagctgact ttaagtccac atatattttg ttcctgccct agatccaatg
     1981 cggtccacct tggtttctgt gaatcggtag aattcccgtt agtattatta ttaccattat
     2041 tagtatcagt ttgcacatcc attataggaa tttcattata ttcgcatctg tttgtgtttg
     2101 tcgactcttg tacgctgtta gtgaaatcca gttccttttg ttgtccattt gttggatcca
     2161 ccaaattatc atactgattt actacgtgtt gctctgttgg agatacttgt ccaaaacctg
     2221 atgaatcagg atcgtttaat tcaaagcttt gaaatgaatt atcattatta ctatttggta
     2281 tttctgtact tgccatatta ttaacgtcat cagtactcat aatattgata ttatcatcag
     2341 tactcatagt actaatatta ctcgagtcca aagcgacttc ttttacttcg ggcttttcaa
     2401 cttcaatcaa gcaagtatag gtaacatatt ttccgtcagg atatatcact ctgagttcca
     2461 aagtatttgg accgtataca tctccaaaac taaattgagt ctttccaact ctgtgaagtg
     2521 gggtcatttc tgttgtatct gcgtcgtaat caacaaagaa tgcattaatt tcgcgaggtt
     2581 ttgttatgaa gctaaatgta attgaatctt ctggtgaaat tgtgacttca ggttcaaaat
     2641 catctggtaa atgcgggaaa ttgattcttt gtaagttttc attatctaat actacgaatg
     2701 gggacatttc ataagacttg ttttgatata tcatcttggc tactggaaca ttcatctcca
     2761 tattgttact actatcagct tctgattttt tactatctac tgatttcttg ctatcttctg
     2821 atttttcact tttttcatct gattgtgcct ttgctgtcaa gagtacagag ctttcaagag
     2881 aagcgatgag catcataatc aagattgacg agagtaaaac gtatttctta ttccggttta
     2941 gtgattgtat caaaactgaa ttcaaaactt attggtattc ttttatattt acgtaatgtc
     3001 gaaaaaatta ctgaaatcaa cgacaagaaa ataaattcat tgactataag aaaataccat
     3061 aaaatgtatg aatctattgc ctgccataga acaatttgcg atgctttcat aagataaaaa
     3121 gtgcttggaa taatttttta tgcttccaat attcaattta tcgagtacta ttgagtgaga
     3181 atatttcatt aaatgagata gaaaagagaa taatatttca tattgatttt gattatttct
     3241 atgcacaatg tgaagaaata agaagaccag aattaagaaa tattccgagt gtcgtttgcg
     3301 tatattcagg acgtgaagaa gattcaggcg tagttagcac atgcaattat gaggcacgaa
     3361 aatatggtgt taaggcggca atgccaatta gaatggcaaa gtcaaaacta aaagatgttc
     3421 attcaatatt tcttcctact gacatgccct attaccatga aatttccaca aaagcaatga
     3481 ggataattca aaactatgga gaactctttg agcaagtcag tgtagatgaa tgctatatgg
     3541 attttacaaa gataacgaat tcagactttg atgatgcaaa aatttttgct gtatccttac
     3601 aaaagaatat caaggaccag ataaaattga cgtgttcagt tggggtggca cccaacaaac
     3661 taatagcaaa gatagcgtca ggtatcaaca agcccaacgg aataacagtt gtacgacaag
     3721 aggaagccaa acaatttatc tcaaattgta agattgagga tatccccgga gttggtccaa
     3781 agacgtccaa gaaactggaa tctttaggga taaaatcggt atccgatata tcaaggaaaa
     3841 gtatttttga attaagagat gccctaggtt ataagattgc aacttttctg gtaaatgcgt
     3901 caaatggtct cgattattca cagataaaaa ttcgcggaac ttcaaagcaa attggcaaaa
     3961 tagttaccct aaaaaaagat atgacatctt ttgaacatgt aagattgaca gtggaaaatc
     4021 tttgtaaatc tgtatttgaa aacctagaaa ataagcggca ggcctacaga gttctcactg
     4081 taattttaat tttagaaaac cttcaacatg tttcattttc tagaagctta aaactctatt
     4141 cagcatcctt tgatgaattg cataagaatt cattatcaat tctaaatgaa atggttgata
     4201 ataattctat ctcccttgac aacattagga gggtgggtat tgtaatatct gatctaaagg
     4261 acatctcagg acaagattcg ttgctgaatt attttgagaa ctagagtttc taaaaatagt
     4321 attgaaacta gaaaaataat tcactatctg atttaagaag attagtaaag tatcgccgag
     4381 caaatcgtga tttcttgcaa ttgatccatg cttatttgaa tctatgatta cttattcaat
     4441 ggtattattg ttttttgaga actttggatt gattttataa taattcatga agatatgaac
     4501 tttaatgatc tattgactaa ttcttctacg actttatctg attttgatcc gattattttt
     4561 gcgtttatga aattagactt tcctccacca ctacctatat tctcgtcatt tctcaattct
     4621 tcaaatattt tggcacaatc taaactaata tcctcactcc ttgcaaaaat aagtgctgcc
     4681 atgtcattat caaccacatt ggcaagaata acaattgttc ttggactaag tatcttttct
     4741 ccggcgaaat tttgaatagt tctccaatcc atatcatgca ggattgtcgt aaatagatta
     4801 acgttctgac tatcaatagt ttgtgttgga acatttacca gtaacttaat tgttattttt
     4861 tttaaaatat tgtgatattg ttctctttct gtgtatagct tctttatagt tgcttctacc
     4921 gtattataat ttgctcctat ttgaatacaa atattattga tcttttctgt tattttaact
     4981 gcctcgtcca tcgcattttt gccgaccatg aacctaatct cataatcaga tccactcatt
     5041 gacatattag ttaccaaaaa aaatatacat tctgataaat tatcaacatg ttccattgag
     5101 catgcagaaa gatcgtggtt ttcaatttca ataactgtga tggtatctac attctccaat
     5161 cttgattcat tagctctgag atcagggaac atcctcttgg cttcttgtag tgaggaaaaa
     5221 gagtaattta gaatctttct accttctaag attaggcgat taacttcctt ctcagcaaaa
     5281 gttatctttt caaaatccag ttctacctct gatcttctta tgaatacaat attgtaggta
     5341 tccttatgtt ccacctttct cacggataat gtcttgttta atattttttg cagcgatcct
     5401 atgaaggcat gctctgcagt atgcgctatt ctcctatcca tgcacatcat caattcaagt
     5461 tactaatgta caggagcatt aaggcattga ttattgatga tgctgtcggg cttcccccct
     5521 ttcttccaat atttgtaata tactccacat ttgtctttaa aagatcagat tttgattcgg
     5581 cagctgaaac aaatcctaca ggtatcccaa tcacgagtgc tggttttact gcattttcat
     5641 ttatcatatt gattacttcg tatagagctg ttggagcatt tcctatcaca acaatgcctc
     5701 cattgatttc tttggatgaa tatctcatcg ccactgtgga tctagtctta ttttgattct
     5761 tagacatatc aattacctcc ctattggata tgttacagat aaggctggtc cctatttttg
     5821 ctacagattt cttgtttatt cctgactgta ccatgtcaac atcaacaaca atgtgtcctt
     5881 tcttctcaaa tgctttgaaa gcgttttcga ctgcattggt cgaaaaaata attccattcc
     5941 tatcaggttt tgcaaagtca aaatcagctg ttgcatggat tacgcgtcta acaactttcc
     6001 attgtagttc attgtaacca tgagttccaa tctctgattc aatgattttc atactgtttt
     6061 cttctatacc aagtgaagat tcagacatat ctctggactt tgcccttttt gctctctctt
     6121 ctttatcatt actttcaatc aactttttgt tctgcctctc ttgccctttc tagtactaat
     6181 tccacaagtt tggggtctac accaaaatgc tccgtaacat gaacctgaat attgtttaga
     6241 ttatagtgtt ccaatgcaga gttgatatct tttataacgt catttttaat atgtgctccc
     6301 ttgtgtaaaa aatagggaac gattatcaca gtgctcggat tgttggaaat aattttatct
     6361 attccgtttg ctatacgtgg ttcatccaat tcaagaaaac aaaatgttac actcctgaaa
     6421 tctggtttta gtcttttgac cgtatgcaca aatgcagttc tagcgctcct gtcactgctt
     6481 ccatgaccta ttaccagtat gtcacacttg tcatttgata acaatacatt atttttttcc
     6541 tttgctgaat gaattctatc tctaatgagt gattcaagtg tagtatgata gctcaggggt
     6601 tttgtaataa ctacctttat cttcctatcg taacagattc tggcagttct ttttacagaa
     6661 tcttttaatt tcatcccagg atataagaaa tagggcatta cggttataga atctacattg
     6721 ttagaaatac atttgttgat accttcttca atgtatgggg gtataacttc aagaaagcaa
     6781 tgatctacat atgcatattc actttcattc ctgatcatag tgcacaattg ggcaagctct
     6841 tcttttgcct ctggttccct gctccctcta tcgattagta acaaagcttt gttcatttca
     6901 gatatctacc ttggagtaat ttatcctaga cactgcaact gtaaggttag gagggaactt
     6961 ttgttttgtt actattagtt caccaccaga gctaagtatt gatgaggctt ctgagacact
     7021 tgatgtgcct tcatattttt ttactacatc tgaaggattt ggaaccatta tcttgtctaa
     7081 cttttccttg tcataaaact ctaaagggat tccatgctta tctgaaaaag aggctaatga
     7141 agcaggagat ttacctctat ttagtgttga gagatttctt atgctaagca aagacaatct
     7201 attttcccct aatactttca aaattccatc ttctatttcc tccagagtcg tatcccagtg
     7261 aaaacccaat cccactacaa gactctttgg cctataaatt acggatttgt taacgacgag
     7321 tggatccgta attatcctgt cagatattat taaaccagct ttgaaatcat ctgattttag
     7381 ttcatcaatg ttatctagta ttgttacgtt ttttggtaat tctttattcc accatcttgt
     7441 ttcacctgca tcctgataaa tacctatttt ttcttcatta accatatgag cactaacctt
     7501 agtaacgttt tcaaaatttt caatacgcca tttaaaatcg gagcccaaaa gatctactgc
     7561 aattgtttca ttaacatcgg cagcggtagt aattacaggt gttgaattta ggaattctgc
     7621 aattgatttg gttaatgagt tggctcctcc tagatgtccg gagagagcac taattacaaa
     7681 atttgcttta tcatctataa cgataactgc cggatctgtt ttcttatctt tcaacagatt
     7741 tgatattaaa cgaattactg ctcccaatga aaaaatgcaa ataatgcttt catattcttt
     7801 gaaaatctcc tcaatcatga tttttgtgtt tttttcaaac cagataatcc catcagaaga
     7861 atctttgtgt tttgattgcg catagattga tgcagttgga atcttctccc ttattcttct
     7921 tgatatattg attccatttt tagtaataca aacaatagca accctgctgc tcatgcatta
     7981 ttttataaaa tttactcaaa taatatactt tgtgttaatg ttatgttaat gaatataaaa
     8041 attcaaatat tgaatgaaac aacagtaatg cagtattcag atgacattga cttttttttg
     8101 taagaggaat cgtcacacag aatgtcctgg tgaatggcca atgggcgatt cgtgtgggcc
     8161 agatcatgat tgctcatttg atgtgaaaat gtcaaaatgc gaatgctcat gtcatgcatg
     8221 aacaatcctg gaataaagta ataagctgtt attttggatc ttatttgaac gtaaatcaca
     8281 aaaatgatct tttcggggtc agaaaattat gtatttcgat cacttttatt tcaaacagcc
     8341 accacatcat cataccccgt taacagttta ttatttattg atttcattaa ttctttagct
     8401 tttcgcttta ttgaatcatt aactttgatt agaacaagac cttctaaagg ctgaccgtaa
     8461 catactagag agtcgtttgg tgcaaaataa catgcaggaa gtgtcaacaa atcctcttca
     8521 ccaataacat gcaatagaac atctttttcg ccagtgaggg caaatcgtat cttgttaata
     8581 gcttctttgg taatggttcc tgcggggtta atacatgaaa ttttagtaaa attttttgct
     8641 tttagttcag acattctatt atccaaaatc ttttcttttt cttgtcttct ctcaatcccg
     8701 tcaattatag ccaagtcagg gtaaatacca aaggaaacaa gtctttcagt ggaacgatcg
     8761 cctactgtta ttattttgtg ctttatgcct gcaatttcct tcttaatttt tttttctgtg
     8821 atatcactat ctaaaattag ctttcctaat ggttttttaa gttctgcaag aacttcaggc
     8881 ggtattgaca ctttgttctt tagaatgttc gatttctgct ttttcctggt cccgcaattc
     8941 agaagcgatt atactgattc taccagcaac agtacgagct attttgtcaa atagaattgc
     9001 ttggttatta tttggttccg aaatcgttac tggattacca ctatcgcttc ccgacattat
     9061 ttgttgatga agaggtattt ctccaatgaa aggaacatta aactgatcgc taaccttctg
     9121 tcctccacct gtaccaaata tagtgatttt attattacaa tgttgacatt ccaaataact
     9181 catattttca atgactccaa tgatggggac atttaatttg ttaaacattc ccactgcctt
     9241 tacggctaca ttcattgcca catcttgcgg agtggtaact atgattattc cggttattgg
     9301 tattgtctgt gccaaagtta aaggtgcatc tccagttcca ggtggcaagt cgataataag
     9361 gtaatcaagc tcgccccaat ttacgtccgt taagaactgt ttaacaattc cagctacaat
     9421 gggacctcta tagattcctg cttgctgtga ttgttcataa aaaaacccca tcgaaatgac
     9481 tttaactcct tgagccaaca ctggttctat cttattatta attacttcag gagcattctt
     9541 gagtcctagc attaagggaa tgcttgggcc ataaatatca gcgtcaagca aacctacctt
     9601 tgcaccggtc tttgccaatg tcagggcaag gttgacagac actgttgttt ttcctactcc
     9661 tcctttacca cttgcaattg caagtatatt ttttacacca ggtagcaatt cgtccattga
     9721 aatcgaacgt ccttccatta ccctggcagt caccttaaga tccagatctt taattcccaa
     9781 gtccatcata gaattacgaa cggattcttc tatctcacta ttaaaaggac aagctggggt
     9841 tgtgagctcc aatgtaaatc caacctttcc atcgttaatt gtaaggtcct taatcatgcc
     9901 cattgaaaca atgtctttat gcaattcggg atcttcaatt gtctgtagtt ttgccatgat
     9961 ttgctctatt gagaccatgt catcgtactc atccaaagaa tatttaaatc atacaatagc
    10021 acgcaccgtg aaactgagtc aagaaataat gaaaaggttc ataaattgat aatttaaaca
    10081 aattgacaat aagtaatgtt tgcgataata cacatggatg acgtagtaag aatccctccc
    10141 agcatgatga aaaaatctct caatgacaca acaatggaaa tcctcaagga aaaatatgag
    10201 agtatgataa atcctgaatt gggttatgtt atcatgatta tcgatgcaaa aacgaacagg
    10261 gtcggaaaac tggtttccgg tgacggtgcc acatttcaca aggtgtcatt taaggcgttg
    10321 acattttatc ctaaaatgca agaaattgtt gaaggagaaa ttgtcgaaat tactgatttt
    10381 ggtgcatttg tacgaatagg tccaactgat gcattattgc acctttctca aataactgat
    10441 gattatctaa aaagcgatgt caaacaaggg gtaatagttg caaatcaatc agccaaatcc
    10501 cttaagattg ggtcaaaact gagagcaagg gttaccgcga taagtttggg aaaaggttcg
    10561 gctatgggaa aaataggaat tacctgcaga cagccattcc ttggagctct tgaatggatt
    10621 gaagaagaga taaagaaagc caaaaaccct gcaccggccg caaataacca aaaagaaaag
    10681 aaagggacag tgcctgctta atggctaaag aacttgcatg caaaaaatgt aaggccatta
    10741 ctattggaaa ggtgtgtcct gtttgcaagt cgaccgaact ttcatccgac tggtctggca
    10801 caatagtaat atttgattca aagaattcct tggttgcatc aacgcttcaa atctctactc
    10861 cgcataaata tgcattaaaa gtaacttgac cttaaagaaa aaaccaaagg atctaaatca
    10921 atattttagt ttgcgagaat ctcttatcag atttctcaga gaagatatag ccacaggcga
    10981 tctgaccagc gagtatgtag tagataagga actagaatct tcatccttta tt
//
LOCUS       DASPFX010000317         3484 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2071901, whole genome shotgun sequence.
ACCESSION   DASPFX010000317 DASPFX010000000
VERSION     DASPFX010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2071901"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..457
                     /locus_tag="VD694_06900"
     CDS             161..457
                     /locus_tag="VD694_06900"
                     /inference="COORDINATES: protein motif:HMM:NF025040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RpoL/Rpb11 RNA polymerase subunit family
                     protein"
                     /protein_id="HXW12470.1"
                     /translation="MQAVIENYKSNEVNLNVSEDISILYIIQHELLNQKEVEFAGVVL
                     KHQLKEDFSFRIVTKKSKPLDILHKALQSSSDNALKVKEMIESEINKDKSAGSA"
     gene            454..771
                     /locus_tag="VD694_06905"
     CDS             454..771
                     /locus_tag="VD694_06905"
                     /inference="COORDINATES: protein motif:HMM:TIGR01384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor S"
                     /protein_id="HXW12471.1"
                     /translation="MKFCPNCESRMKPRIEENILICPKCGFTEAKNEITSVPLIDQSG
                     ASLKIIESEKGPSALPTTNIDCPKCGNNTAFWWMLQTRSADEATTQFFRCTQCSHTWR
                     NYA"
     gene            953..1705
                     /gene="pcn"
                     /locus_tag="VD694_06910"
     CDS             953..1705
                     /gene="pcn"
                     /locus_tag="VD694_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030337 - DNA polymerase processivity
                     factor activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proliferating cell nuclear antigen (pcna)"
                     /protein_id="HXW12472.1"
                     /translation="MVFLAKTKSPDEWKAVTSAISTLVDEATFEATVEGLSFRGMDPS
                     HVALIDISWPNSAFDGYECDSALKFGVRIDEFSKLMKRAEKKDAVEVSVEENSLLHIK
                     ILNGYKREYKMRLIESTGGSTPLPKLNFNSKVILTPASFDRILSDIEVVSEYISIDSD
                     DKKITFSGKSDSGEADIVIESGSEGLEELQVKDTSKATYSLDYLSKITKAISASGGSL
                     VLEYSTKMPLRLEFRVANVGRIHFYLAPRVQD"
     gene            complement(1830..2165)
                     /locus_tag="VD694_06915"
     CDS             complement(1830..2165)
                     /locus_tag="VD694_06915"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HXW12473.1"
                     /translation="MEYKVCNSEELPNNSMKVINVKGSNILVCRSNERLFAFDNSCPH
                     RGASLSKSDIKGTKIICYMHDFEFDLNNGKLVHIPNKWKDQNPNWTKSDNLLLFPVSE
                     KDGEIYVRL"
     gene            2295..>3484
                     /locus_tag="VD694_06920"
     CDS             2295..>3484
                     /locus_tag="VD694_06920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HXW12474.1"
                     /translation="MEYHRVSEIKKDEFLGKDIKIRGWVYRIRKQKDKAFIIIRDDRG
                     GIIQCVLPSASVPDITIESSLEIHGTLFKDERAKEGGYEIRGNDVKIHHIASNDFPIR
                     EYQSTELLLDYRHLTLRTRKMITVAKIRATILEKVRNWFIENGWMEVNVPTLVKSAVE
                     GGSTLFPVKYFKEEAFLSQSAQLYLEALIFSLGPVWTIGPSFRAEKSRTLRHLAEYLH
                     LEAEAPWISLNDLFSVQEKLLVNLVGHLINERKEELEFLNRDIPSLTQIKEPFDKLSY
                     DKAIEILSSMDIEIQEDEGTRKIKWGDDLNIDSEKALTKDRTNPVFVYGYPLQVKPFY
                     VKEDPETPGVALTTDLLLPNGFGEVSSGGMREDNINLLKSRIEKEGLNMNSYSWYLDL
                     RKYGS"
BASE COUNT         1173 a          550 c          692 g         1069 t
ORIGIN      
        1 tatcaagcca tctatattaa agcccaggtc caacgtcaaa atcgtatctg atcctatgct
       61 cttgtgaggt gtatcaagtt taatatccga aatgaggctt ttctgcattg ggcttcgcag
      121 atggtataat ttatatcttc aataagtagt tgtctgtatc atgcaggcag tgatagaaaa
      181 ttacaaatca aatgaagtca atttaaatgt cagcgaagat atttcaattt tatacattat
      241 acagcacgaa ctattgaatc aaaaagaagt agaatttgca ggtgttgtac tcaaacatca
      301 attaaaggaa gattttagtt ttagaattgt gacaaaaaaa tcaaagccac tcgatatttt
      361 gcataaggcc ttacagtcct catcagataa tgccttaaag gttaaagaaa tgatcgaatc
      421 ggaaataaac aaagataaga gtgctggttc tgcttgaaat tttgccctaa ttgtgaaagc
      481 agaatgaagc caagaattga agagaatatt ttgatttgtc ccaaatgtgg tttcacggag
      541 gctaaaaatg aaattacatc agttcccctg atagaccaaa gcggggcaag tctaaagata
      601 attgaatctg aaaagggccc cagtgctcta ccaactacga atattgattg tcccaaatgt
      661 ggaaacaata cagcgttttg gtggatgtta caaacaagat ctgctgatga agctacaacc
      721 caatttttta ggtgcaccca atgtagccac acttggagaa attatgcctg aaaaaggatt
      781 gtgcaagaac tggctctata agataattat ataaataatc ataataagtt ccagaatcta
      841 tagttctgtt ttttccgtat ttctcgcgtg attattagag ttgaacttgt agctttttac
      901 aaagaatagg aatgtttaaa atgttttgaa tctgcctctt tgattgatat agttggtatt
      961 tttagcgaag acaaaatcac ccgacgaatg gaaggcagta acttctgcga tatctacttt
     1021 ggtcgatgag gcaacatttg aggctactgt tgaaggttta tcgtttagag gcatggaccc
     1081 gtcacatgta gcattaattg atattagttg gcccaactct gcgtttgacg gttatgagtg
     1141 tgattcggcg ttaaaatttg gtgttagaat agatgagttt tcaaaattga tgaaaagagc
     1201 tgagaaaaag gatgcagtag aagtttccgt ggaagagaac agcttgcttc atatcaagat
     1261 cctaaatggt tacaagagag aatataaaat gcgattaatt gaaagtaccg gaggatccac
     1321 ccccttgcca aaattgaatt ttaattccaa ggtaatattg actccagctt catttgatag
     1381 aatcttgtct gatattgagg tagtctcaga atatatatca attgactctg atgacaagaa
     1441 aattaccttt tctggtaaaa gcgattccgg tgaagctgat attgtcattg aatcaggtag
     1501 tgagggtctg gaagaattac aggtaaaaga tacaagcaag gctacctata gtttggatta
     1561 cttatcaaaa atcacaaaag ccataagtgc ctcaggaggt tcactggtac ttgaatattc
     1621 tacaaaaatg ccacttcgat tggaatttag agtggctaat gtaggaagaa ttcatttcta
     1681 tctggctcca agagtacagg actagaatcc tttcttgtaa cccaaaatcc acagaaagtc
     1741 attatgtgtg atgtgtgatg acttactgtc aattagtaat tcggaataac aagaaatacc
     1801 aaataagaac ttctcaatta ataatattgt tataatcgca catatatttc accatctttt
     1861 tcggatactg gaaagagtaa caaattatca gattttgtcc aattcggatt ttgatccttc
     1921 catttgtttg gaatatgtac tagttttccg ttatttagat caaattcaaa atcatgcata
     1981 tagcaaatta tttttgttcc ctttatatca ctcttagaga gagatgcgcc cctatgtgga
     2041 catgaattat caaaagcaaa tagtcgttca ttagatcgac acacaagaat attagaaccc
     2101 ttgacattta ttaccttcat tgaattattt ggaagttctt cgctattgca cactttatat
     2161 tccattgttg aatactagac tattttcttt ctataaattc atttttaata tagtactaat
     2221 ttaatttatg ttttttttct atacatgggc agtacaatat cattataaag atcgtttacg
     2281 tcgtaagtac acaattggaa tatcacagag tcagtgaaat taagaaagat gaatttctag
     2341 gtaaagatat caaaattagg ggttgggttt atagaattcg caaacaaaag gataaagcat
     2401 tcataataat tagagatgat cgcggcggaa taattcaatg tgtattgccc agtgcaagtg
     2461 ttccggacat aactatagaa tcctcgttag aaattcacgg tacactgttc aaagatgaaa
     2521 gagcgaagga aggaggatat gaaattcgtg gaaatgatgt caagattcat catatagcaa
     2581 gcaatgattt tccaattaga gaatatcaaa gtactgaact attactggat tatagacatc
     2641 tgactttgcg aacaagaaag atgattaccg ttgcaaaaat aagagcaact attctagaaa
     2701 aagtacgcaa ttggtttatt gagaatgggt ggatggaagt taatgttccc actttagtta
     2761 agagtgcagt tgagggggga tcaactcttt ttcctgtaaa atatttcaag gaggaagcat
     2821 tcctgtcgca aagtgcccag ctatatttgg aagcactgat tttttcactc ggtccagttt
     2881 ggacaatagg tccctcgttt agggccgaaa aatcaaggac gctcagacat cttgcagaat
     2941 atttgcattt agaagcagaa gctccttgga tatcccttaa tgatcttttc tccgtccagg
     3001 aaaaactact tgtcaatttg gttgggcatc taataaacga gagaaaagag gagcttgaat
     3061 ttttgaacag agatattcct tctttgactc aaattaagga accgtttgac aaattgagtt
     3121 atgataaagc gatcgaaatt ctttcttcaa tggacattga gatccaagag gacgaaggaa
     3181 ccaggaaaat taagtggggt gatgatttga atatagattc tgaaaaagcc cttacgaaag
     3241 atcgtactaa tccagttttt gtgtatggtt atccgcttca agtcaaacca ttctatgtaa
     3301 aggaggatcc ggaaacccct ggagtagctc taaccaccga tttacttttg ccaaatggct
     3361 ttggtgaggt aagcagcgga ggcatgaggg aagataatat caacttactg aaatccagga
     3421 ttgaaaaaga aggattgaat atgaattcat attcatggta tttggacctt agaaaatatg
     3481 gatc
//
LOCUS       DASPFX010000318         2137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1643105, whole genome shotgun sequence.
ACCESSION   DASPFX010000318 DASPFX010000000
VERSION     DASPFX010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1643105"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VD694_06925"
     CDS             <1..547
                     /locus_tag="VD694_06925"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HXW12475.1"
                     /translation="GVFEKEFVQQINRLNKTTSVIEVHFALTKRIEEQLQVVFPVGNQ
                     FSAKGIFFVSNISSKVSPDGQQLVLTGTPVSSEDAINPDRIRKISQEMKQNLSTIYFQ
                     FNARKDTLWERPMAWQLVESVVKEPGLVWKHKMPHEVKDQVKGLFFVGDSTISYGIGT
                     DSAAHSALLCYEKVLSYLSPK"
     gene            complement(1012..2007)
                     /locus_tag="VD694_06930"
     CDS             complement(1012..2007)
                     /locus_tag="VD694_06930"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HXW12476.1"
                     /translation="MSSMQDNRINEQIFTNSDSVVTERSRITSSNKFRNSRVLVIGLG
                     QLGLPIAKYVKEKGFDTYGYDIEQKAIERAEKVASIKRADSFSDFDVYIICVSTHMPD
                     DIFTPQIDGLLYIVEEISRKARNGAIVSIESTIPRGTSKKVFEILNHRLHVVHVPHRW
                     YALEEIEHGVNQLRVIGGVHDCCLRAALQFYTGDGNSSISSNNNNNENRNLGIPLHTV
                     SDIEIAETTKIAENAHRYLQIAFAEDLYLYCKTNNLSFPELREAINTKWNVNILEPRD
                     GIGGHCLPKDTRMFLQSSKSIKSKILTAALEVDQDYRRHRQSRVELEVLCKDISK"
BASE COUNT          624 a          410 c          364 g          739 t
ORIGIN      
        1 tggagtcttt gaaaaggaat ttgtacaaca gataaatagg cttaataaaa ccacatccgt
       61 aattgaagta cattttgcat taacaaagag aatcgaagag cagctgcaag tagtgtttcc
      121 ggttggaaat caatttagcg caaaaggaat ctttttcgta tcaaatatat cttctaaagt
      181 gtctccagac ggacaacagt tggtactaac tggaactcca gtatcgagtg aagatgcgat
      241 caacccagat cgaataagaa aaatatccca agaaatgaaa caaaatcttt ctacaatata
      301 ttttcagttt aatgcaagga aagatacgtt atgggaacgg ccaatggctt ggcagcttgt
      361 agaaagcgta gtaaaggagc caggtttggt atggaaacat aaaatgcctc acgaagtcaa
      421 ggatcaagtc aaaggattat tctttgtcgg tgactcaact attagttatg gtataggcac
      481 cgactctgca gcccatagcg cattactttg ctatgaaaag gttctgtcat atctatctcc
      541 caagtgaggt cattctatat tcggattttc gtattaatca ggccttaagg atgatgatta
      601 gtcccatata ccaaccttca ttcatcatat gataatactg taacccggtc tattcttacg
      661 tatttacaat tgaagctgat aaatgaagtc gagagagttt ttagttatct cttgccggaa
      721 ttaagatggt gatatacatc aatctacctt aagtccttta atagactgtc agaaaatcgg
      781 gatccagagg gatcaattac tctccttatg aactgctctg ttttataatt catatccgct
      841 gctttcatat ctatgttatc ataatcatta taatgctttt tgcacattat caatgatgtt
      901 tctacgtcat cccattttag taagcaatcg catggtaata atattgtctt gttctgctgt
      961 atcagcagta gcagcacctc atgctttgac tttgtttttg ttttttctgt atcacttgga
     1021 tatatcctta cacaatactt ctagctcaac tctggattgt ctgtgtcttc tgtaatcctg
     1081 atccacctct aatgccgctg tcaatatctt actttttatt gatttagatg actgtagaaa
     1141 catcctagta tctttaggta gacaatgtcc acctattccg tctctaggtt ctagtatgtt
     1201 cacgttccat ttagtattaa tggcttcacg caattccggg aagcttagat tatttgtttt
     1261 acagtacaga tagagatctt ctgcaaaggc tatttgcaaa tatctgtgag cattttctgc
     1321 aatcttagtt gtctctgcta tttctatatc tgatacagta tgcaaaggaa tccctagatt
     1381 tctattttca ttattattat tattactact aatactacta ttaccatccc cggtgtagaa
     1441 ttgcaatgct gctctaagac aacaatcatg gactcctcct ataacacgca gttgattaac
     1501 tccatgttca atctcttcta aagcatacca tctatgtggt acatgtacta catgtaatct
     1561 gtggttaagt atttcgaata ctttctttga tgttcctcta ggaatggtac tttctattga
     1621 gacgatagcc ccattcctag ctttccttga aatttcctct actatgtata ataatccatc
     1681 tatttgaggt gtgaaaatgt catcaggcat atgagtggac acacaaatta tgtatacatc
     1741 aaaatcactg aaactatcag ctcgctttat tgatgctact ttctctgcgc gttcaatggc
     1801 cttctgttcg atatcatacc catatgtgtc aaatcctttc tctttgacat attttgctat
     1861 aggaagacca agttgaccaa ggcctattac taagactcga gaatttcgga atttgttgct
     1921 agatgttatt ctggaacgct ctgttactac cgagtctgaa ttagtaaata tttgttcatt
     1981 tattctgttg tcttgcattg atgacatttg aatttacaca atttacagaa cccctttatt
     2041 taaacataac tgaccagtca gttatgttta ttaactggcg ttctatataa cagtttatgc
     2101 gaccagtacg agacaaagtc atggttcttt atagcat
//
LOCUS       DASPFX010000319         3468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2037272, whole genome shotgun sequence.
ACCESSION   DASPFX010000319 DASPFX010000000
VERSION     DASPFX010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2037272"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1394
                     /locus_tag="VD694_06935"
     CDS             69..1394
                     /locus_tag="VD694_06935"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HXW12477.1"
                     /translation="MSANELFDRVLSLLRKHHEWFNNSIPLIASENIPSPAVREAIIS
                     DFGNRYAEGWPGERVYAGCTYIDQVEIICNDLAKRVFGAEFADCRATSGVVANLAIYS
                     AFTDPGDYMIAASIPTGGHISHGKKEHSGTAGLVHGLNIEHYPFLKEEMTIDVDATKK
                     KIEEMARSGKTPKLGMFGGSLFLFPHPIKELADFMHDYNIHINYDGAHVAGLIAGGRF
                     QDPLREGVDTMTMSSHKTLWGPQGGIIVSYEKHAESIKKAIFPGNTSSHHLHHVAGKA
                     IALAESLEFGKEYATQVIANAQKLGEQLAGLGFGVLGEKRGYTESHQIAVDVSKFGDG
                     GTVEKDLENANIILNRQLLPGDIKAGRHYMHPSGIRIGVPEVTRLGMKEDQMIDIAHF
                     IKRVVIEKEDPAIVAKDVSNFRKEFQKVHYTFDDITGAYEYISLVNRSK"
     gene            complement(1430..>3468)
                     /locus_tag="VD694_06940"
     CDS             complement(1430..>3468)
                     /locus_tag="VD694_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HXW12478.1"
                     /translation="RYSFFWEHISIDEILFLKENLICSYIQDNNKNKASCSYFLIKNN
                     FQLKDILERLGVYHSIVDEDHIKIDDPNQVYSLQRLLFSNSNTLTERYGLQFCANDNI
                     KSLNTIEFVSYSSGIRLMPKFASSIAVRVGRPEKAAERKMKPPVHVLFPIGSKGGSTR
                     DILKASKIKSSFFTEIANRFCNSCKFPSLGTKCTKCGSSTPIRNLCIVCREEILYNGK
                     NNRCSRCGREGKPYSPVSFPLSKVIEQAQHKLGLKAAEPFKGVKALMSKNKSAELLEK
                     GLLRQKHMLYAFKDGTIRFDATNEPLTHFKPVWIMTNIEKIKKLGYNKDYIDRDLTSS
                     DQLIELLLQDIVLPLDCAEHLVNVAKFVDEELVKVYHLEPYYGISTIEDLIGHLIVGL
                     APHTSVGIIGRIIGFTKSQVCLASPIWHSAKRRDCDGDADSIMLLLDAFLNFSFDFLP
                     DKIGGLMDAPLLIQPTVLPYEVQRQAHNVDISSIYPLEFYEATWNRAKAADITSKIEI
                     VKNRIGKEDQFFNYMFTHFTESLTTNVQHSAYSRLSTMDEKLQMQISTAKLINAVDED
                     EVVSMVLTTHILPDIMGNMRAYSSQTFRCSKCAEKYRRIPLRGNCLKCENELLQTVTR
                     GSVEKYLNIAHYMCREFKINDYLRNRVESLSTELKLIFREQKKEQSTLIEFMNK"
BASE COUNT         1125 a          585 c          656 g         1102 t
ORIGIN      
        1 ttcgatcaaa ttatttgtgt gtttatgcaa tgttttaaat taggacagaa aacgaaaata
       61 gtaaatatat gagtgcgaat gagttatttg atagagtatt aagtttatta agaaagcatc
      121 atgaatggtt caacaactct atcccattaa ttgcaagtga gaatatacct agtccagcgg
      181 taagagaggc aattatatct gatttcggaa ataggtacgc agaaggctgg cctggtgaga
      241 gagtctatgc aggttgtaca tatattgatc aagtagagat aatatgtaac gatttagcga
      301 agagggtctt tggtgcagaa tttgctgact gtagggcaac atcaggagta gtagcaaatc
      361 ttgcaatata ttctgcattt acagatccag gcgactacat gattgctgca tccataccca
      421 ctggcggtca tatttcacac ggtaagaaag aacattctgg tactgcaggg ttggtacatg
      481 gattgaatat agaacattat cctttcttaa aagaagaaat gaccatcgat gtagatgcaa
      541 cgaagaaaaa gatcgaagaa atggctagat cgggtaagac accaaagtta ggaatgtttg
      601 gaggaagtct atttcttttc cctcatccta tcaaggaatt ggctgacttt atgcatgatt
      661 acaatattca tattaattac gatggggctc atgtggctgg tctaattgcc ggaggtagat
      721 ttcaagatcc attgagagaa ggagtggata cgatgacgat gagttcacac aaaactttat
      781 ggggtcccca aggagggatt atagtttcat acgagaaaca cgcagaatct ataaaaaagg
      841 caatcttccc tggtaatact agtagtcacc atcttcacca tgtcgcaggg aaggcaattg
      901 cactggctga atcactagaa tttggaaaag agtatgctac acaggtaatc gcgaatgctc
      961 aaaaacttgg agaacagctt gcaggtttag gttttggagt attaggagaa aagagaggat
     1021 atactgaatc acatcaaatc gctgttgatg tttcaaagtt tggtgatgga ggaactgttg
     1081 aaaaagattt ggagaatgca aatataattc tgaatagaca actattacct ggagacatta
     1141 aagcgggaag acattatatg catccaagcg ggataaggat cggggttccg gaggtaacta
     1201 ggctaggaat gaaagaagat caaatgatag atatcgccca ttttataaag cgagtagtaa
     1261 ttgaaaagga ggatccggct attgttgcaa aggatgtgtc caattttaga aaagagtttc
     1321 agaaagtgca ctatacattt gacgatataa caggtgcata tgaatatatt agtctagtta
     1381 atagatctaa ataataacag aatattatca aaataatcaa catctttgac tatttattca
     1441 tgaattcaat cagtgtagat tgttccttct tttgctctcg aaagatcaat ttcaattcgg
     1501 ttgatagaga ttctactcta ttacgcaggt aatcattaat cttgaattct ctacacatat
     1561 aatgcgcaat attaagatat ttctcaacag aacctcttgt tactgtttgt aataattcat
     1621 tttcgcattt aaggcaatta ccacgtaatg gaattctacg atatttttct gcacatttac
     1681 tacatctaaa tgtctgggag gaataggctc tcatgttacc cattatatca ggtaggatat
     1741 gtgtagttag taccattgat actacttcat cttcatcgac tgcattaatt aattttgcag
     1801 tagatatttg catctgcaac ttttcatcca tagtacttaa tctagaatat gcactatgtt
     1861 gaacatttgt tgttaatgat tcagtgaaat gtgtaaacat atagttgaaa aattgatcct
     1921 cttttccaat cctattcttt acgatctcta ttttggaagt aatatctgct gctttagctc
     1981 tattccacgt ggcctcatag aattctagag gatagatcga ggatatatcc acgttgtgtg
     2041 cttgtcgctg cacttcatat ggtaatacag taggctgaat caacaatgga gcatccataa
     2101 gtccgccaat tttatcaggc aaaaaatcaa aagaaaaatt tagaaacgca tcaagcagca
     2161 gcattatgga gtcagcatca ccatcacaat ctcttcgctt tgctgaatgc catataggag
     2221 atgctaggca tacttgagat tttgtgaatc cgataattct acctataata ccaactgatg
     2281 tgtgcggagc aaggccaaca atcaaatgac ctatcaaatc ttcaatagta gaaatgccat
     2341 agtaaggttc tagatgatat acttttacta attcctcgtc tacaaatttg gctacattaa
     2401 ctaaatgttc tgcgcaatcc agaggtagaa ctatatcttg cagcaatagt tctatgagct
     2461 gatcggatga agttagatct ctgtcaatat aatccttatt atatcctaat ttcttaattt
     2521 tttcaatatt ggtcattatc cagactggtt taaagtgtgt aagtggttca ttggtcgcat
     2581 cgaatcttat ggttccgtct ttaaaagcat acaacatatg tttttgtctg agcaatcctt
     2641 tctccaataa ttctgccgat ttatttttgc tcatcagagc cttgactcct ttaaaaggtt
     2701 ctgcagcctt tagaccgagt ttgtgttgag cttgctcaat tactttactc aaaggaaagc
     2761 taacaggtga atagggtttg ccttccctgc cacatctact acaacgattg ttctttccat
     2821 tatacaagat ctcttctcta cacactatac ataaattacg aataggagtg gatgatccac
     2881 atttagtaca ttttgttcct aatgaaggaa atttacaact attacaaaat ctatttgcga
     2941 tttctgtaaa aaaggatgat ttgatctttg aagcctttag aatatctcta gtagagccac
     3001 cttttgaacc tatagggaat aatacatgaa ctggaggttt cattttacgt tctgcagcct
     3061 tttcagggcg gccgaccctt actgcaattg aagaagcaaa ttttggcatc aatcgaattc
     3121 cagaactata tgagacaaat tctattgtat tcaatgattt gatattatca ttagcacaga
     3181 actgtaaacc atacctttct gtaagggtat tagaattcga aaacaggagt ctctgcaaag
     3241 agtatacctg attaggatca tctatcttaa tatgatcttc atctactatt gaatggtata
     3301 ctccaagtcg ttccaaaata tcttttaatt gaaaattatt cttaatcaag aaataggaac
     3361 atgatgcttt attcttatta ttatcctgaa tataagaaca aattaggttt tcctttagga
     3421 acaatatctc atctatacta atatgttccc agaaaaaaga atatcttg
//
LOCUS       DASPFX010000320         3208 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1069086, whole genome shotgun sequence.
ACCESSION   DASPFX010000320 DASPFX010000000
VERSION     DASPFX010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1069086"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VD694_06945"
     CDS             complement(<1..199)
                     /locus_tag="VD694_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S6e family ribosomal protein"
                     /protein_id="HXW12479.1"
                     /translation="MTQFKIIISDKKGKSVSKELKDKEAQPLVGLRVGEIVDSSVVGI
                     PSGKIQLRGGSDKSGTPIRSDV"
     gene            complement(538..711)
                     /locus_tag="VD694_06950"
     CDS             complement(538..711)
                     /locus_tag="VD694_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-domain-containing protein"
                     /protein_id="HXW12480.1"
                     /translation="MLDAKCPQCNDKAQVSEDMTTVYCKNCGYSDSYQDYIEKMKIKA
                     ENMADDFQFKGNV"
     gene            complement(757..1917)
                     /locus_tag="VD694_06955"
     CDS             complement(757..1917)
                     /locus_tag="VD694_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12481.1"
                     /translation="MSASSLKVAVYGLSTEGYKIASHISNKGIPVSIIDDSSGMAITL
                     KPDIAKTYSSVTSFIQDETLLDFEPFDVAINNASFIFFTPRIRKSWPDAKNHIGSKFQ
                     DVIKHVNKDSSIIYSVPAGFGINNENVTLIEHRTGLSVGKNIFYYYLPISSISPTVFE
                     SIIGTRSELNANLENMLRDLHPENKMKVVDIESAEYIYCIRILRHYGLMSPIFEICKF
                     ADETFQSQMMESQSFDDMYLDDLVSGLFDLNTILSSLTGISPLTLLLKGNIATVENYI
                     KHLTEQIKIILKKYELKASKTKAIISWTFDPNEMRGDRLEILSRLESRLRDYVGDVER
                     QDAMFDFYSSEKKLIVVSCSKSDFEKLDKNNPNSDIIVIRATPLLAQSSIQK"
     gene            1997..3085
                     /locus_tag="VD694_06960"
     CDS             1997..3085
                     /locus_tag="VD694_06960"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HXW12482.1"
                     /translation="MSAYTWCVRIWFDVLTPKQVMFFKHSVDLLKVKDHELLCTGRNY
                     RECVKLSRLKKFNLKIVGKFGGSSKYDKLRASSSRIFDLAKEIKEFEPELCISFSSPE
                     AARVAFGLGIPHVTFSDSPHARAVQKLTIPFINYLLCPWIIPYSAWKNLGISRNQIIR
                     YHALDPVAWIRTETKLKNEKKSKSKYGLEKNHTIVIRPEESKASYLIDKESNVDKILE
                     SIIVNFHNTSDIVVLGRYEDQIRHLKEKHGDKIKVPQNVVDGMELITLADVFVGGGGT
                     MTAESALLGKPTISISPIKFYVDDYLVKMGLIRKISNSSSIVEILHQMQYNNKFRTEQ
                     KNRAKRVLDQMEDPADKLMKIIDRFVAL"
     gene            3115..3207
                     /locus_tag="VD694_06965"
     tRNA            join(3115..3124,3145..3207)
                     /locus_tag="VD694_06965"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3169..3171,aa:Gln,seq:ttg)
BASE COUNT         1021 a          569 c          589 g         1029 t
ORIGIN      
        1 ggacatcact tctgattggt gttccggatt tatcactacc tcctctaagt tgaatcttgc
       61 ctgaaggtat accaacaact gaagaatcaa caatctctcc aactcgtaga ccaaccagcg
      121 gttgagcttc cttatccttt agttctttgc taacactttt acctttcttg tcagagatta
      181 ttatcttaaa ttgagtcaat atgcaatgaa acctgaatca gagcgttaat taatctttac
      241 gacctgaaat ttattaaata ctttaataat tggcaatgcg aaaaatatcc agtgcaaagc
      301 caagataaga aggtcgaaaa agaaagaagg tgtatacgat gcggtttcac aatgttcagc
      361 cttcaaagct gtcatctgag atgtgagaat tgcggatccg agttgacatg ttctgataaa
      421 ggtttgtttt ggtaattaag aaaaaagaat caaggtatct tcttgattca cttgtatgta
      481 atttgcagct aaattgctat tacgattgac tatctagcaa ttgagttatg tcgaagttta
      541 gacgttacct ttgaactgaa aatcatctgc catattttct gcctttattt tcattttctc
      601 tatataatct tgataactat cagaataacc gcaattctta caatatacgg ttgtcatatc
      661 ctcactaact tgtgctttgt cattgcattg gggacacttt gcgtctagca aatcaaatta
      721 aagtgacctt cgcctattat tatatttttt aagtgatcat ttctggatac ttgattgagc
      781 caatagtggc gttgccctga taacaatgat atctgaatta ggattgtttt tgtcaagttt
      841 ttcaaaatca gacttggagc acgaaacaac aatgagcttt ttttcgctag agtagaaatc
      901 aaacatggca tcctgtcttt ccacatcgcc cacatagtct cttaatcttg attctaatct
      961 agataggatt tctaatctat cccctctcat ttcattcgga tcaaaggtcc atgaaattat
     1021 agcctttgtt ttactagctt tcaattcata tttcttgaga atgattttga tttgttcagt
     1081 cagatgtttt atgtaatttt caactgtggc aatatttcct ttgagcaaaa gtgtgagggg
     1141 cgagattcca gttaacgatg atagaattgt atttaaatca aataaaccac tcacaagatc
     1201 atcaagatac atatcatcaa atgattgact ttccatcatc tgagattgaa atgtttcatc
     1261 tgcaaattta caaatttcaa aaattggtga catcaaaccg taatgtctca gaattcttat
     1321 acagtagata tattctgctg attcaatgtc tactaccttc atcttgtttt cagggtgaag
     1381 atctcttaac atattttcaa ggttggcatt taattcagat cgtgttccaa taattgattc
     1441 aaagacggtt ggggaaatgg agctaattgg tagataataa tagaaaatat ttttacctac
     1501 actaagacct gttctgtgct caatcaacgt tacgttttca ttatttatac caaagccagc
     1561 aggaaccgag tagattatgg aactatcttt gtttacatgt tttattacgt cttgaaactt
     1621 tgatccaatg tggttctttg catcgggcca tgattttcta atcctgggtg taaagaaaat
     1681 aaatgaagca ttattgatgg ctacatcaaa tggttcaaaa tctaagagag tctcatcctg
     1741 aataaatgag gttacactag aatatgtctt ggctatatct ggcttgagtg taattgccat
     1801 ccctgatgaa tcatcaataa ttgagacagg aatacctttg ttggaaatat gagaggctat
     1861 cttgtatccc tctgtactta ggccatatac tgctaccttc aatgaactag cactcactgg
     1921 tatattcaat ccctatcagc atattatttt tgttcctgca caaaattaag aatggttgaa
     1981 gaaaagtttt ttccatatgt ctgcttatac atggtgcgtg agaatctggt ttgatgtttt
     2041 gaccccaaaa caagttatgt ttttcaagca ttcagtggat cttttaaaag taaaggatca
     2101 tgaattgtta tgtaccggta gaaattatcg agaatgtgta aaactctcta gactaaagaa
     2161 atttaacctc aaaatagttg gaaaattcgg tggttcatca aagtatgaca aactaagagc
     2221 aagttcgagc agaatttttg atttggccaa agaaataaag gaatttgaac ctgaattgtg
     2281 tatcagtttt tcgtcaccag aagctgctag ggtggcattt ggtttgggaa tacctcatgt
     2341 tacatttagt gactcgcctc atgcccgtgc tgttcagaag ctgacaattc cgttcataaa
     2401 ctatctttta tgtccgtgga taataccata ttctgcctgg aaaaacctgg gaatttcaag
     2461 gaatcaaata attcgctatc acgcccttga tcctgtcgcc tggattagaa cagagacaaa
     2521 gctgaaaaat gaaaagaaat caaagagtaa atacggtctt gaaaaaaatc atacaatcgt
     2581 cattagacca gaggaaagta aagcatccta cttgattgac aaggagagta atgtcgataa
     2641 aatattggag tcaattatcg taaactttca caatacttca gacattgtgg tattgggtag
     2701 atacgaagat caaataagac accttaaaga aaaacatggt gacaagataa aggtcccaca
     2761 aaacgtggtt gacggaatgg agctaataac tctggctgat gtgtttgttg gtgggggcgg
     2821 tactatgact gcagaatccg ctctccttgg taaaccaact atctctattt ctcccatcaa
     2881 attctatgtt gacgattatc tagtcaagat gggcttgatt cgcaagatct caaattcgtc
     2941 aagtattgta gagatactcc accaaatgca atacaacaat aaatttagaa cagaacaaaa
     3001 aaatcgagca aaacgtgtac tggaccaaat ggaagacccg gcagataaac tcatgaaaat
     3061 cattgacaga tttgtagctt tataaatcag atattcgata aaaaaatgtc cggcagcccg
     3121 gtagagaatt ttaaattcgc tgaatgtagt ggccaagcat agaggccttt ggagcctttg
     3181 accccagttc gaatctgggc cgggctaa
//
LOCUS       DASPFX010000321         2141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2103930, whole genome shotgun sequence.
ACCESSION   DASPFX010000321 DASPFX010000000
VERSION     DASPFX010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2103930"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..585
                     /locus_tag="VD694_06970"
     CDS             289..585
                     /locus_tag="VD694_06970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12483.1"
                     /translation="MADPGKNGSGKGHKNNDGNDRNKGGDHGKKNNNENRGENKKADE
                     KKAVDEKKTLKRSTKLLQKYTGDLPLAMNQIIEMRVLTLWQQAILDAIQIQKAL"
     gene            537..1358
                     /locus_tag="VD694_06975"
     CDS             537..1358
                     /locus_tag="VD694_06975"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HXW12484.1"
                     /translation="MAAGDFGCNSNTKSTVENMVKSNPELVLPLGDLSYQKSANCWFE
                     AMAPLKGKIMITLGYHDVNDGEAKLGQYFNSFEINKPYYSFDYRKTHFIVMASESQYQ
                     IGSDQYNFVKQDLEMTSNRTDINWIIVTSYNPFYSSPSKHTGEKGLRSLYHPLFEKHG
                     VDLVLHGHNHNYQRTYPISYNPKDGSEPNVKYNFTTGYNDRIGGTVFATVGTGGESFY
                     PLLGKSYYVATQLDRLGYLNVQLDNGNPHTSLTGTFLDNIGSEMRDQFTIEKQIK"
     gene            complement(1545..>2141)
                     /locus_tag="VD694_06980"
     CDS             complement(1545..>2141)
                     /locus_tag="VD694_06980"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HXW12485.1"
                     /translation="EISGYPIILVALVGLAVNLISIMLLRPHTELKKSHDPHDNKEED
                     LQKEKNLNLYGAYLELFADTIGSVGVIIAGIIIMTTRFYLADALISIGIALFIIPRTW
                     FLLKKSIHILLEGTPSHLDHEEIKRSLLKVNGVTGVFDLHVWTITSGIHALSAHVVVI
                     NTNKSQTILQQINAILEKNFKITHATIQIESYHQSGNI"
BASE COUNT          735 a          348 c          405 g          653 t
ORIGIN      
        1 aatcaagata ttcttcaata tttagagatt ctaattagat tcattaaata aattttctgt
       61 cttaaatcgt gtaattttca aaatatagaa atcagaatcg tagtcagtag cagaagtttg
      121 catctacaga cagaataata atatatattg acgttgttga aaaatcaaaa ggcgcttcaa
      181 ttgatttgct actttattgg atgtaaaaca acaataatct gtattataat attcttaact
      241 attgcgctca tttcctcaaa tatcctgatg tattatgaac aatctattgt ggccgatccg
      301 ggtaagaacg gatctggaaa aggacataaa aataatgatg gaaacgaccg gaacaaaggg
      361 ggtgatcatg gcaagaaaaa caataatgaa aatagaggag agaataaaaa ggccgatgaa
      421 aaaaaggcag ttgacgaaaa aaagacattg aaaaggtcaa ccaagttact acaaaagtat
      481 acaggggatt tgcctttagc aatgaatcag ataatcgaaa tgagagtttt aactttgtgg
      541 cagcaggcga ttttggatgc aattcaaata caaaaagcac tgtagaaaat atggtaaaga
      601 gtaatccgga attggtgtta ccattgggag atctttctta tcaaaagagc gctaattgct
      661 ggtttgaggc catggcgcct ctcaaaggta aaataatgat tactttaggg tatcatgatg
      721 tgaatgatgg agaagcaaaa ttaggtcagt atttcaatag ttttgaaatc aacaaacctt
      781 actactcttt tgattaccga aagacacact ttattgtgat ggcttcagaa tctcaatatc
      841 aaattggctc ggatcagtat aattttgtaa aacaagatct agaaatgaca tctaacagaa
      901 cggatattaa ctggatcata gttacttcat acaatccatt ttattcttcg ccctcaaaac
      961 acactggtga aaaagggtta cgaagtctat atcacccact atttgaaaaa cacggagttg
     1021 atttggtact acacggacat aatcataact atcaacgaac ttatcccatc tcgtataatc
     1081 ccaaggacgg ctcagaacca aatgtaaaat ataactttac tacaggttac aacgatcgta
     1141 ttggaggaac tgtgtttgca actgttggaa ctggaggcga aagtttctac cccctgcttg
     1201 gaaagtcgta ttacgtggct acacaacttg atagattggg atatctaaac gtccaactag
     1261 acaatggaaa ccctcatacg tcgttgacag ggaccttcct cgataatatc ggcagtgaga
     1321 tgagggatca atttacaatt gaaaagcaaa taaagtaatg aggttcgatg gatggaaatt
     1381 gtagtttgaa ggtagaaggt agaatccaac aagtacattc tcgattatct atttattttt
     1441 tacattctat taaatttgtt actacaaatg cgaatagaat agccaatatg acttttgtca
     1501 aagttgcatg gcgtattaat catattaact tggataaaac tagtttagat attacctgat
     1561 tgatgatagg attctatttg tatagttgca tgcgttatct tgaaattttt ttctagtatt
     1621 gcattaatct gttgcaaaat agtctgagat ttgttggtgt ttattactac tacatgagca
     1681 gataatgcgt ggataccaga tgttatagtc caaacgtgta gatcaaagac tcctgttact
     1741 ccattgactt ttaatagcga tctctttatt tcttcgtgat ccaaatgtga gggagtgcct
     1801 tcaagtaaaa tgtgaattga tttctttaat agaaaccagg ttcttggaat gataaatagg
     1861 gctataccaa tacttatcaa agcgtcagcc agatagaacc gcgtagtcat tattattata
     1921 ccagcaataa tgactccaac agatccgatg gtgtctgcaa ataattcaag gtacgcccca
     1981 taaaggttca ggttcttctc cttttggagg tcttcctcct tgttatcatg aggatcatgt
     2041 gattttttca attctgtatg tgggcgcagt aacattatac ttatcagatt gactgcaaga
     2101 cccaccaaag ctaccaaaat gattggataa ccacttattt c
//
LOCUS       DASPFX010000322         2612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1050302, whole genome shotgun sequence.
ACCESSION   DASPFX010000322 DASPFX010000000
VERSION     DASPFX010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1050302"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            312..689
                     /locus_tag="VD694_06985"
     CDS             312..689
                     /locus_tag="VD694_06985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12486.1"
                     /translation="MPNANYHKIKHLVEVDDDILGVFTVNSIGQYRMENVTIAKNANI
                     TEDFVNHIFTKYQSHFTIYKEETDDTIGNLRWSVNETDRIRILIIYEKDRSIIVLIKS
                     NISLSESVDNILGYYYEPTTPRI"
     gene            complement(796..2013)
                     /locus_tag="VD694_06990"
     CDS             complement(796..2013)
                     /locus_tag="VD694_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HXW12487.1"
                     /translation="MATEQAIIHVLISLSILLFAAKIFAELFNKLKLPAVLGELIAGI
                     VVGPFALGSIPIFDGKPLVILSETVHQIGEISGLVILFIAGLHITPREFLRGGAASFT
                     IGALGVIVPFFLGYYVFTFFGIHALQSILIATALTATSIAISVNVLSELGKMQTKEAK
                     MILGAAIVDDILAIAVLSVVVSMVQTGNMTPNMIDIIFLILKILGIFAVLLIGAIIII
                     PKILHAERLWKARGSIEGITTASFFGASAIAASVGLSPIVGAFSVGMAVASTKLIKRV
                     EEYVDKLEIIFAPLFFGIIGAQVNLTGINLDVLFLSAIMITVAIVSKLSGCGLPALMF
                     LRNKSKSMKVGIGMISRGEVGLIVAGIGVTSGALSPNIYTTVIIMVAITTLITPIWLK
                     KAYSKDRVTEYNS"
     gene            2233..2412
                     /locus_tag="VD694_06995"
     CDS             2233..2412
                     /locus_tag="VD694_06995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12488.1"
                     /translation="METQNTSNNQESNFSQVKDSNYNQQKSSILRENIPSFTKILVAD
                     DGRNETDKMLNYAIS"
BASE COUNT          949 a          459 c          431 g          773 t
ORIGIN      
        1 ctattcttta tggcgatagt taacaaaaaa tagatacatt ccgttacgac tagtttctaa
       61 aggtgataag aaataagttt catctattgt gataatctca ttacttaaat atagaaacat
      121 cggaaaaagc aagatggttc acaatccttc aatgcttact gttttcaagt gcatactgac
      181 atctgtttga tacataacaa accattatga actaggacgg ttcaggaaaa aacaaggtaa
      241 atacaatatc atgaaaatta tttgataaat acttttgtag tagaatgttc ttaacataaa
      301 caagacaaag aatgcccaac gctaactatc acaagataaa acatttagtt gaggttgatg
      361 atgatatttt gggtgttttc acggtaaatt caataggaca gtatcgcatg gaaaatgtga
      421 caatagcaaa aaatgccaat attacagaag attttgtaaa ccatattttc actaaatatc
      481 aaagccattt tactatctat aaagaggaaa cagatgacac tatcggtaat ttgaggtgga
      541 gtgtcaacga aactgatagg atcagaatac ttattattta tgaaaaagat cgttctataa
      601 tagttctaat aaaaagtaac ataagcttgt ccgagtctgt cgataacata ctaggatatt
      661 attatgaacc tacaaccccg agaatttaac gtaattttag tttttaaagt aatgtactca
      721 gatatttttt catgctacaa accaaactga gcttactatt ctgggtaacg ataaagcaaa
      781 acaggatcat attcatcaag aattatattc ggtaactcga tctttactgt atgctttctt
      841 caaccagata ggagtaataa gcgtagttat agcaaccata attataactg tagtgtaaat
      901 atttggcgac aaagcacccg aagtaactcc aatccccgct acgatgagtc cgacctcacc
      961 tcttgaaatc ataccgatac ctactttcat ggattttgac ttgtttctca ggaacattag
     1021 tgccggcaat ccacatccag atagtttact gacaatagca acagtgatca taattgcgga
     1081 cagaaacaat acatccaaat ttattccggt aagatttacc tgcgctccta ttataccaaa
     1141 gaataacgga gcaaatataa tctctaattt gtcaacatat tcttcaactc tcttaattaa
     1201 ttttgtactg gctacagcca ttcctacaga aaatgctcct actattggtg acaagcctac
     1261 agaagcggca attgccgaag caccaaagaa cgatgcggtt gttatgcctt ctatacttcc
     1321 cctagccttc cacaatcttt ctgcgtgtaa tatcttgggt ataatgataa ttgctccaat
     1381 taataacaca gcaaatattc ctaatatttt taaaatgaga aatatgatat caatcatgtt
     1441 gggagtcatg ttaccggttt gaaccattga tactaccact gacaggacgg caatagcaag
     1501 aatatcatct acaatggctg cccccaaaat catttttgct tcttttgttt gcattttccc
     1561 taattcactt aacacgttaa cagatatcgc aatactggtt gccgtaagtg cggtagctat
     1621 aagaatagat tgtaatgcat gtattccaaa aaaagtgaaa acgtagtatc ccaagaaaaa
     1681 tggaacaatg actcctaatg ctcctattgt aaatgaagca gcacctcctc ttagaaattc
     1741 tctaggtgtt atatgcaaac cagcaatgaa tagtattacc aatcccgata tttcacctat
     1801 ttgatgcact gtttcactca agataactag gggtttgcca tcaaatatgg gtatagaacc
     1861 cagtgcgaaa ggacctacaa ctattcctgc tattaattcg cccaaaacag cgggtagctt
     1921 caatttatta aaaagctctg caaatatttt tgcagcaaaa agaagaatgg aaagtgaaat
     1981 taatacatgg attattgctt gttcagttgc catttctaat tttttctaat attgcctata
     2041 ttagagcttg ttcgtcgaag aaatctcaac gggactatga taaaaaacta taatacgaat
     2101 aggagtggtc ttttgctaaa caatactaat tgatcagcct ttacaatttc tcgaacaaga
     2161 cttcttaaat aggagcctaa ttgggatcgg gtctaatata atcattaaat tgcatagtgg
     2221 acatacaacg atatggaaac ccaaaatacc tcgaataatc aagagagtaa ctttagccaa
     2281 gtaaaggatt caaattataa tcagcaaaaa tcttcaattt taagggaaaa tattccttcg
     2341 tttactaaaa ttttagtagc cgatgatgga agaaatgaaa cagacaaaat gttaaactat
     2401 gccatatctt agtccaatta ttcgggagca gaactcttaa ttttaagaat tttagaaaat
     2461 atcaaaaaca cgggagatgt ttcagtagaa ggacgttcca ctgatgacaa tatgcaaaat
     2521 aaagacgtga atcgagagat taaaggacgg attatagacg atattgaaga aagaataaaa
     2581 aaatgcaaag aagcaggatg taaaaacaag at
//
LOCUS       DASPFX010000323         7052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_256231, whole genome shotgun sequence.
ACCESSION   DASPFX010000323 DASPFX010000000
VERSION     DASPFX010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7052
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256231"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VD694_07000"
     CDS             complement(<1..351)
                     /locus_tag="VD694_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12489.1"
                     /translation="MTFLLGCALTSATALDSYGSTNSTSQVTSTQPINGVVMKGIIVN
                     MKQDDNDSPSAPDNYIEDSFKKISEAGLDHARFLFYWEAYERDPDAFMKEIKSVANAA
                     DKYGVKIIYDNHQWH"
     gene            complement(773..2407)
                     /locus_tag="VD694_07005"
     CDS             complement(773..2407)
                     /locus_tag="VD694_07005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12490.1"
                     /translation="MSFLLAFVFTGTAFSSSQVSASEPTINQPINGVVMKGVSVSMKQ
                     NDKVSPLAPNNYIEDSLKMISSAGLNHVRFVFYWEAYEKDPEAFMNEIKSVANAADKY
                     GLKIIYDNHQWHTSSWFEEKATGFPWSLLQRNSEYTRNGGGNTHDKGAQEFWKDWWNR
                     SVKGNDGKDGWTLMAEFLKKIVLTVDNHSSTLGYEILSEPHVDSKGHWSKIGKFNSFI
                     TAQLRNITEKTIIYSMNVPIDLNSHINISPKNLAKMAPSDKENIAFKVSIYAVPEGDS
                     YQEKRFDMFLKTSDVAGVPLYIGEWNNVVRTKQDGITKLNPELSELTKTDARKILGSL
                     KKAEVWGTAFWRWDYQKVATANFNLVSDKNGKLVPTKYLGILEDSVERVYGSSVGKST
                     SSTKENDLVTELVKTGKFTKDEAKDIVSKTMQNEVDDPTTSNGIKSSDNQANNADQSS
                     DGNAKKPEQYDNLNALVDDIESHVIDTENISLKGFQDSGAYQGASKQFQDCIDLAGKI
                     GQNLGDQEIVHCSEDSSYYEGRLSDTDNSNNTEDTN"
     gene            2996..3556
                     /locus_tag="VD694_07010"
     CDS             2996..3556
                     /locus_tag="VD694_07010"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HXW12491.1"
                     /translation="MVLDSAMIPIPSEIILVFSGYLVTTGTFDPISLILAGSFGNVIG
                     SIATYYIGLKFGRLFILRFGKYFFIKEHHLEYTEKMFRKYGDKISLLGRLLPAIRTYI
                     SLPCGVAKMSLLKFSIYTFIGSVIWNTIFTYIGIQLGSKWHDIDNYSIYLEIVTACAI
                     AAFAIWFSIKMLRKRGSNKKSFCIFI"
     gene            3782..4414
                     /locus_tag="VD694_07015"
     CDS             3782..4414
                     /locus_tag="VD694_07015"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HXW12492.1"
                     /translation="MTGDWLSWVRANDAEIMTMLEKQASNLVKAANILAESISDYSTL
                     NDKNALLKNLEHQGDQFTHELFTIIDKTFVTPLDKEDISELTSTIDQVLDATYGTSDR
                     MILFKIQKSSVHMQKLADLLLKACNEIYNAVKELPKAKREDLIQYSKAISRCEHEGDN
                     IYRIAIADLFETDNAIEIIKSKEVYETLESALDRSRDVADVIEDIALKYR"
     gene            4422..5423
                     /locus_tag="VD694_07020"
     CDS             4422..5423
                     /locus_tag="VD694_07020"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HXW12493.1"
                     /translation="MIPTEIAVYSAISAALFFDFVNGFHDSANSIATVVGTRVLRPLY
                     AVMIAAVANFAGPFIFGTAVAATVGKGIIQPSFSTVEVIFAGLIGAIIWDLITWYFGL
                     PSSSSHALIGGLIGSALLAGGTSALVFSGIEKTLTFIVVSPTLGFVFAFGIAILVMYF
                     FKKYTSSHVNKIFGRLQICSSIFFSLTHGANDGQKTMGVITALLIAGGMLDSHSFVIP
                     IEVVLAAAFAIALGTFFGGWRIVKTMAFKLTSLRPFQGFCAETGGGVILTSMAWLGIP
                     VSTTHAIAGGIMGVGATKRLSAVRWGVGKRIVYAWIITIPASAAVAALVSIVIKLVT"
     gene            5578..>7052
                     /locus_tag="VD694_07025"
     CDS             5578..>7052
                     /locus_tag="VD694_07025"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HXW12494.1"
                     /translation="MSGEVKAPYFTMGSITLLIMMLLIPNHTINGQSTEELLSPSIPK
                     ETIKIINPITTQNVSAGQELSISGLSSDNSLKNCSVSLIVNDVKPYQNAVASGTGGID
                     DFSQWKFVLHTNYTQIIDGENKITAKLLCSSAPTRWYSVFVVGVPNISNQEILSPVQS
                     EPPQELPTTDASDIVDTDSNNNMMLVSVLSQKNPVARGDTQNTTITVTDSNSRAIPNA
                     EIDGKLVYPGNDFEKTFKGKTDPKGKFVYSWTIGENGDVGPLSIEIEVSSHGYIDSSV
                     TNSFDIVDSSSISGVNSVSDETIAGGKSEFEFTVAGDYGCDSKTRQTVEGMEDEDPDL
                     VLALGDLSEVKDSDCFFDIISNLDDDGRFKVALGEDDTGSVRYRDYIRHFDLKNPFYS
                     FDYQNVHFLAMSTGKGSVIPYVNGSEQYQFIQDDLSKAANNPNIDWIIVYGYRPFYTS
                     PTIHPANENLRETYPPLFEKYGVDLVITAHNHNYQRSYPLV"
BASE COUNT         2194 a         1271 c         1278 g         2309 t
ORIGIN      
        1 atgccactga tgattgtcat aaataatttt cacaccgtac ttatctgccg cattggctac
       61 tgattttatt tccttcataa atgcatctgg atctctttca tatgcttccc aatagaatag
      121 gaatctagca tgatccaaac ccgcttcaga aatcttctta aaactatctt caatgtaatt
      181 atcaggagca gaaggcgaat cattatcatc ctgtttcata tttacaatga ttcctttcat
      241 aacaactcca ttgatgggtt gggtactagt tacctgactt gtcgagtttg tcgacccgta
      301 agagtctaaa gcagtggcgc tagttaacgc gcaacctagt agaaaagtca aaattattct
      361 gctacctaaa atcaatgcaa tactagaata attctcgatt gatttaatat gtattactga
      421 ttaatgacgt tgttttgcgc ctttctctag cgatattaaa gtattatttt tgaatttaaa
      481 gtggaaagga ggttcaatta atctatataa agattgtaaa tttctcatgt actgttgtaa
      541 aggtgatgct tctatactta cctacagcta accgagatta aatatttttt taatgatttc
      601 tctgaatatt ttctacagta tcattacaaa tacgttacta taatagtata cataatattt
      661 gaattcataa tattgaaata atgtgttaaa tgatattctt tacaatcttg tgatctacta
      721 atgttaattt caattaaagt tctaatttag ataaaaagaa atagatatac tactaattag
      781 tgtcttcagt gttattactg ttgtcagtat cagatagcct gccttcataa tagctcgagt
      841 cttctgaaca atgtactatt tcttgatcac caagattctg tcctatcttt cctgccaggt
      901 ctatacaatc ttgaaattgt ttactcgcgc cttgatatgc tcctgaatct tgaaagccct
      961 tcaatgaaat gttttcagtg tcaatgacgt ggctttcaat atcgtctact agcgcattta
     1021 gattgtcata ttgttcaggt ttctttgcgt ttccatcgga ggattggtcg gcattattgg
     1081 cttgattgtc agacgatttg atgccatttg aagtcgttgg atcatctact tcattttgca
     1141 ttgttttgga tacgatatcc ttggcttcgt cttttgtaaa ctttccagtt ttcacaagct
     1201 cagttactaa atcattttct ttagtactgg aagttgattt accaacagag gaaccataaa
     1261 ctcgctccac agagtcttcc aagataccca agtactttgt gggcaccaac ttaccattct
     1321 tatcagaaac caaattgaaa ttagcagtag ctaccttctg gtaatcccat ctccaaaaag
     1381 ctgtgcccca cacttctgct ttcttaagtg aaccgagtat ctttcttgca tcagtttttg
     1441 taagctcact taattcaggg ttaagtttgg ttataccatc ctgctttgtc cttacgacgt
     1501 tgttccattc tccaatatac aggggtactc cagctacatc acttgttttc aaaaacatat
     1561 caaatctctt ttcttggtaa ctatctcctt caggaactgc gtagatactt accttgaatg
     1621 cgatattctc cttgtctgaa ggtgccattt ttgccaagtt ttttggcgag atattgatgt
     1681 ggctattcaa gtcaattggc acattcatac tgtagattat agttttctca gtgatatttc
     1741 tcaactgtgc agtaataaag ctattaaatt tgcctatttt agaccaatga cctttactat
     1801 caacatgagg ctcgcttagg atctcatatc ctagcgtact tgaatgatta tcgaccgtca
     1861 gtactatttt cttgagaaat tctgccatca gtgtccatcc atctttgcca tcgttacctt
     1921 tcacagacct attccaccaa tctttccaaa attcctgggc acctttatca tgagtattac
     1981 ctccaccgtt cctggtatac tcagaattgc gttgtagtaa tgaccaagga aaacctgttg
     2041 ccttctcctc aaaccacgaa gaggtgtgcc attgatgatt gtcataaata atttttagtc
     2101 cgtacttatc tgccgcattg gctactgatt ttatttcatt catgaaggct tcgggatcct
     2161 tttcataggc ctcccaatag aagacaaatc tgacatgatt caaacctgcg ctggaaatca
     2221 ttttcaaact atcttcaatg taattattag gagccagagg cgaaactttg tcattttgtt
     2281 tcatgctgac agatactcct ttcatgacaa ccccattgat cggttggtta attgtcggtt
     2341 cactagctga tacctgtgag ctagagaaag cagtgccagt aaatacaaaa gctagaagaa
     2401 aagacaaaat tagcacactg ctcaataaaa tcaaaacaat agaaaagatc tcaaaatgat
     2461 ttaatatcta ttactaatat tttctcaaag ttccatggta gagcagtttg aatcaattga
     2521 cagaagtggt tacaaaaagg ttagataata ggccacgttt gatgggcaaa ggcgaaggca
     2581 attaagacat taatttctat taaatcatta aaaacaggtc caggccttct cctcccactg
     2641 tcattaatga tgaaatattg aatatgttta aaattctaat tgatgatttg aaatgacttt
     2701 tttttatttc taaattataa ttacttcaaa aagtaacaaa ttatacaaaa attgaattca
     2761 agtcttgtaa tcacttgagg aaaaaatatg ataaacaaag aatttttgta ataattaata
     2821 ataacaggat atgaggtttg aaaacactct aaatggacca ttatttgaaa agagatattt
     2881 atcgcatttg ttctagaaca tgtaaatgtc agttctcttt gggattctta aacctcttgt
     2941 agattttgtt acttcgatta tatcaaatct aggttatcct ggggtcatat ttttgatggt
     3001 tttagatagc gcaatgattc caattcctag tgaaattatt cttgtttttt caggatatct
     3061 ggttacaaca ggcacatttg acccgattag ccttatcctt gcgggatcat ttggaaacgt
     3121 gataggatcg attgctacat actatattgg cctaaaattc ggtagattat tcatactacg
     3181 atttggtaaa tattttttta tcaaggaaca tcaccttgaa tatactgaaa agatgtttcg
     3241 gaaatatggt gacaaaattt cactactagg tagattgtta cccgcaataa gaacttatat
     3301 ttccttacct tgtggagtag caaagatgag tctcttaaaa ttctcaatct acacttttat
     3361 tggatcagta atttggaaca cgattttcac ctatattgga atccagcttg gaagtaaatg
     3421 gcatgatatt gataattatt caatatatct tgagatagta acagcttgtg ccattgcggc
     3481 attcgcaatt tggttttcga taaaaatgct aaggaaaaga ggttcgaaca agaaatcatt
     3541 ttgcattttt atctgaaaga atagattgat ccggctcgga attctcttgt acttgaagtg
     3601 gctaattgac aaattcaaat accctcgggc attttcctct attcttatcc tcatctccaa
     3661 taatttcaat ccccgcaaat aattgtcggt tcttggtgac ggattcgttg cagtgtattc
     3721 aaaaatgaaa agtaagacag acgaaaggtt tctataatca tcattgtaat tagatttcgc
     3781 cttgacagga gattggctat cttgggtacg cgccaacgat gctgaaataa tgactatgct
     3841 tgaaaagcaa gcaagtaatc ttgtaaaagc tgcgaatatt cttgcagagt ccatcagtga
     3901 ttacagcacg ctaaatgaca aaaacgcttt actgaaaaat ttagaacatc aaggagatca
     3961 gtttactcat gaattattta ctataattga caagacattt gtgacaccac tcgacaagga
     4021 ggatatttct gagctgacta gtaccattga tcaagtcctt gatgccacgt atggaacttc
     4081 agacagaatg atactgttca agattcagaa atcttcagta catatgcaga aactagctga
     4141 cctactattg aaagcgtgca atgaaattta caatgcggtt aaggaattac caaaggcaaa
     4201 aagggaagac ttgatacaat atagcaaagc aataagccgt tgtgagcacg aaggagataa
     4261 catttatcgt attgcaattg cagatttatt tgagacggac aatgcaattg aaataataaa
     4321 atccaaagaa gtttacgaga cactcgaaag tgcacttgac agatctagag atgttgccga
     4381 cgttatagaa gacatcgctt taaaatatcg atgattaaat attgataccc actgaaattg
     4441 cagtttattc agccatctca gctgcactct tttttgattt tgtcaatgga tttcatgact
     4501 cagcgaattc aatagccact gttgttggca ctagagtact tagaccactt tatgcggtaa
     4561 tgatagcagc agttgcaaat tttgccggac catttatttt cggcactgcg gtagctgcaa
     4621 cagttggtaa aggtataata cagccatcat tttcaactgt ggaagtaata tttgcaggat
     4681 taattggtgc cataatttgg gatttaatta catggtactt tggtcttcca tcatcaagta
     4741 gtcatgcatt aataggtggt ctaataggat cagcgttact tgcaggagga acttcagctt
     4801 tagtattttc aggtatagaa aaaacactta cgtttattgt agtatctcct actttgggtt
     4861 ttgtttttgc atttggaatt gcaatacttg tcatgtattt tttcaagaaa tacacgtctt
     4921 ctcatgttaa caagattttt ggacggcttc agatttgttc ctcaatcttt ttctcgctca
     4981 ctcacggtgc aaatgatggt caaaagacga tgggtgtgat cacggcattg ctaattgcag
     5041 gggggatgct tgattctcat tcatttgtta taccaattga agtagtacta gcagcagcct
     5101 ttgccattgc attgggaact ttctttgggg ggtggagaat agttaagaca atggctttta
     5161 agttaacaag tctacgccca ttccagggat tttgtgctga aacaggaggc ggtgttatac
     5221 ttacatcaat ggcctggctt ggtatccctg taagtactac tcacgcaatt gccgggggta
     5281 taatgggagt tggtgctaca aaaaggctat cggcagtgag gtggggtgtg ggcaagagaa
     5341 ttgtttatgc atggattatc acaattccag ctagtgcagc agttgctgca ttagtatcga
     5401 tagtaatcaa acttgtcaca taattttcaa ataaatctgc tatatttcat tctagatgca
     5461 aattcatata tgacgaatct cctaactatt tgattattct actttttgcc aacagaaaat
     5521 aatatttgaa aatcaagctt cagaatatat atatgacaaa tatcgattct gaaagagatg
     5581 tccggtgagg taaaagcgcc atattttacc atgggttcta ttaccttgct tattatgatg
     5641 ctgttgattc caaatcacac gataaatggt cagagtaccg aagaattact atcaccttct
     5701 atacccaaag agacaataaa gataattaac ccaataacaa cccaaaacgt aagtgcagga
     5761 caggaactgt caatatcggg tctatcttca gataactccc tgaaaaattg ttcagtatct
     5821 cttatcgtca atgatgttaa gccataccaa aacgctgttg caagtggaac tgggggaatt
     5881 gatgattttt ctcagtggaa atttgtattg cacactaatt atacccaaat aattgatggt
     5941 gagaataaga taactgcaaa gcttctatgt tcatctgcac ctacccgctg gtatagcgtt
     6001 tttgtagttg gagttcccaa tatcagtaac caagaaatat tatctccagt tcaatcagag
     6061 ccaccgcaag aattacccac tacggacgca tctgatattg tagatacaga tagtaacaat
     6121 aacatgatgc ttgtatcagt tctttcacag aaaaatcctg ttgccagagg cgacacacag
     6181 aacactacaa taactgttac tgattcaaat tcaagagcaa tcccaaatgc cgagatagat
     6241 ggaaaattgg tatatccagg aaacgacttt gaaaaaacat ttaaaggaaa aacagaccct
     6301 aagggcaaat ttgtatattc atggactatt ggagagaatg gagatgtggg accactatct
     6361 atcgagatag aggtatcaag tcatggctat attgactctt cagtgacaaa ttcctttgac
     6421 atcgtcgatt cctcatcaat ttcaggagtc aatagcgttt cagatgaaac tatcgcaggt
     6481 ggaaaatctg aatttgaatt tacagttgct ggtgactatg gctgtgattc aaaaactcga
     6541 caaaccgtag aaggtatgga agacgaggat cctgatttgg tcctcgcctt aggggattta
     6601 tcagaagtaa aggattctga ctgctttttc gatattattt caaatttaga tgatgatggc
     6661 agattcaagg ttgctcttgg cgaagatgat acagggtcag taagatatag agattacatt
     6721 agacattttg atctaaaaaa tccattttac tcatttgatt atcaaaatgt tcattttctg
     6781 gcaatgtcaa caggcaaggg atctgttatt ccatatgtaa atggatccga gcaatatcag
     6841 ttcatccaag atgacctgag taaagcagca aacaatccaa acattgattg gataatagta
     6901 tacggttaca ggccatttta tacttcacct acgattcatc ctgcaaatga aaatttgaga
     6961 gaaacatatc ctcctttgtt tgaaaagtat ggagttgatt tggtaataac tgcacataat
     7021 cataattatc aaagatccta tcctttggtg ta
//
LOCUS       DASPFX010000324         2684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_77623, whole genome shotgun sequence.
ACCESSION   DASPFX010000324 DASPFX010000000
VERSION     DASPFX010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77623"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..277)
                     /locus_tag="VD694_07030"
     CDS             complement(110..277)
                     /locus_tag="VD694_07030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12495.1"
                     /translation="MNRRFAGNSLFAVFASGASAADIIDQGRKIYANIVEDNYCSNIR
                     IFDIFYLFSID"
     gene            346..624
                     /locus_tag="VD694_07035"
     CDS             346..624
                     /locus_tag="VD694_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12496.1"
                     /translation="MGEDETNTLITETLLDSPAEVRRIKDQIIRYIKYMANIQKLAHS
                     TIPVLLYAVFNFYTINSESKSSLHFQIHTREKKEYKEKLPTHTNKYFI"
     gene            657..797
                     /locus_tag="VD694_07040"
     CDS             657..797
                     /locus_tag="VD694_07040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12497.1"
                     /translation="MVLILASNGMRIGALPDITIGAISKMNVKGYTDHLHKLTVYDGE
                     PE"
     gene            1084..1395
                     /locus_tag="VD694_07045"
     CDS             1084..1395
                     /locus_tag="VD694_07045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12498.1"
                     /translation="MSFVLCVCVKLADQSIITYALSKCGFKDIAVERINVIFTFSSPE
                     EYTQFNQAIAAPINAMLADQSQERKEEIWKAVTESASNYVDATGNVKLDNESICICAK
                     K"
     gene            1831..2046
                     /locus_tag="VD694_07050"
     CDS             1831..2046
                     /locus_tag="VD694_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12499.1"
                     /translation="MTRSFDDWWSTIPSDLKEKARKGDEANRPLLNQVNYALLNLQLA
                     GKHEAKPSHEELRTWLHSGQIDVVRVK"
     gene            2094..2297
                     /locus_tag="VD694_07055"
     CDS             2094..2297
                     /locus_tag="VD694_07055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12500.1"
                     /translation="MDTEIDIERAADQIMKDAGGSKLDALNILLSKYQSQRRFEEATR
                     VQAIIRREQDKVEDYGHGFQQDM"
BASE COUNT          940 a          461 c          471 g          812 t
ORIGIN      
        1 ctgccgctga tgcagaggaa gacgcgaagg cttgctctaa ggacatatta actcctgcca
       61 atgctgtaat tattagtaca gctaaaatta caggtatact tgtattcatt taatcaatag
      121 aaaagagata aaatatatca aatatacgaa tattgctaca gtaattatct tctacaatgt
      181 tcgcgtatat ctttctacct tgatcaataa tatcagcagc agaagcacca gaagcaaaaa
      241 cagcaaatag actgttacca gcaaatcgtc gattcactta acaaatcaaa attaactcag
      301 caaaaataca tccaagtatt ttcttattat ttgaagtggt taggtttggg tgaagacgaa
      361 accaatactt taatcactga aaccctactt gattcacctg cagaagttag aagaataaaa
      421 gatcaaatta ttagatatat caaatacatg gcaaatatcc aaaaattagc acactcaact
      481 atccccgttc tattatatgc tgtattcaat ttctacacga ttaacagtga atctaaatcg
      541 tcgttacatt tccaaattca tacccgcgaa aaaaaggaat acaaagagaa gttacctaca
      601 cacacgaaca aatatttcat ttagtgaatt cgtcaaccga cctgaggcaa cctgtcatgg
      661 tattaatatt agcatcaaat ggaatgcgca taggtgctct acctgatatt actattggcg
      721 caatctccaa aatgaatgta aaaggatata cagatcactt acacaaatta accgtttatg
      781 acggagagcc agaataatac ttatatctat aacaagcatc aattaccctc ccttaaagag
      841 aaagcattag aatggatatt ttattctaca taacgtcact tatagcaaca cataagcgat
      901 gggcttgatg tatgtcggct cgctctttcc actgacaatg tctacactca gaacacaagg
      961 caggcagtgt ctaaccaatc aattttgcct tccgatatac atttgtaata acttgcccgc
     1021 cattgccctt atcataaccc gtttatcccc gtaccgattt aactgctact tctgttgatg
     1081 agaatgagct ttgtgttgtg cgtgtgcgtt aaacttgctg accaaagtat cattacttat
     1141 gccttatcta agtgcggatt taaggatatt gctgttgaaa gaattaatgt aattttcaca
     1201 tttagttcac cagaagaata tactcaattt aatcaagcaa tagccgctcc cataaatgca
     1261 atgttagccg accaatctca agagaggaaa gaagaaattt ggaaagctgt caccgaatcg
     1321 gcaagcaatt atgttgatgc tacaggcaac gtcaaattag acaacgaaag tatatgtata
     1381 tgtgctaaaa aatagaagga attatgatgg aattgtaatc catcctatct tttataatag
     1441 ctgtatagct tgttagttca attaatctgt attacagtcg ttttaatata taattggata
     1501 ccataaatat aatgactaaa aagaatgtaa tcgaggctag ttttaatttt aatggaatta
     1561 catccgtatc tgtttctgaa gactaacaac taagaaaaaa tcgtatgaat aagtagtaac
     1621 tcgtgcctgg gctttagact agagatgcta acttctttat tgtttactat caactccttt
     1681 cttatctgcc atcgaccaat agtgtgattg tatatatttc taatcatttt ttagctcatt
     1741 tttatctaaa taatacataa actccgataa tttttctcat ttattaattg aattgaacct
     1801 ttaaaacgtt tgttgtgctg attaatcata atgacaagaa gtttcgatga ttggtggagc
     1861 actataccat ctgatctaaa agagaaagcc cgtaaaggtg atgaggcaaa taggccgcta
     1921 ttaaaccagg ttaattatgc tcttctaaat ctacagctag caggcaagca tgaagccaag
     1981 ccatctcacg aagaactccg aacttggttg catagcggtc agattgatgt tgtccgagta
     2041 aagtgagtaa tccaatggta acaaaatcaa ctctgatgaa ataggtaata gatttggata
     2101 ctgaaattga tatcgaaaga gcagctgatc agattatgaa agatgcaggt ggatccaagc
     2161 ttgatgcatt aaatatactt ctcagcaaat atcaaagtca aaggcgtttt gaagaagcca
     2221 cgcgagttca agctattata cgtagagaac aagacaaggt agaagactac gggcacggct
     2281 ttcaacaaga tatgtagtct atttatggtc tctggaagtc atatattagt caactagagt
     2341 atctggtttg atattctatt tcgccattct aaatagaaat atgattgaat tgagggagag
     2401 gatgtgtcat gtacttgtgc gtggataaaa acaaagaagt tgttgcaagc tttggcgttt
     2461 atgattatga attggaaggc ttttaatata aacgacctca tagttatgta gtcaaagtgt
     2521 taatttagca cattaatgga aatggattga atattagctt gagtattaca ttgaaagaag
     2581 atctagctca aattgcatca atattaaatg aaatattcca gatcgaacga gattacgata
     2641 cagcatttgg aaaaatatgt aatattcttc agaaatatgg gata
//
LOCUS       DASPFX010000325         2030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2086535, whole genome shotgun sequence.
ACCESSION   DASPFX010000325 DASPFX010000000
VERSION     DASPFX010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2086535"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(433..957)
                     /locus_tag="VD694_07060"
     CDS             complement(433..957)
                     /locus_tag="VD694_07060"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HXW12501.1"
                     /translation="MRISSKIEKAINDQISYEASAINAYTAMGSWCERTGYDGSAAFF
                     FEQATEENTHLLKFVHYLNNAEAEAIIPAIEKPQSKFNSLESTFQTALKSEQTVTKLI
                     NDLVEIAEKEKDRATSLFLQWFISEQVEEEILFQTILQKFEIFGREKLAVYQIDQSLA
                     SIRSQVMAKKQISH"
     gene            complement(1624..1761)
                     /locus_tag="VD694_07065"
     CDS             complement(1624..1761)
                     /locus_tag="VD694_07065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12502.1"
                     /translation="MFNPTDVNLAIAYLVHNKSLFSMKTMQNIGGQVVAGNKITSDKI
                     K"
BASE COUNT          627 a          337 c          362 g          704 t
ORIGIN      
        1 aatcatacaa cccttttcat ttatcatcat tattggcaca aacaaagaga cggtcttgat
       61 ggcctcatgt gctctaaaac ccacaataaa cttgttaatc acaggaaggc taaccaaata
      121 ggagtattca tggtgggttg attaaggaac taagaattaa aagtatcgtt tataggggac
      181 aaagagatac tattattgga tctataatag ctgcactact gaattcctca tgaatacggt
      241 aggtactggt tacgtttagg ttggacctcg ctggtccccc taaatttagg atgtagcttg
      301 ctggcacgta ctaatggtgt gagcaagttt tttcatccaa gagaggaccg agcgaaacgc
      361 caagttagag tcgaatctag tgaagctgcc ctacctgtca tggcgttttt gtctacggta
      421 tggctagtaa tatcaatgtg agatctgttt cttagccatc acttgagatc taatcgatgc
      481 caaggattga tcaatttgat atactgctaa tttctcacgt ccaaatatct caaacttttg
      541 aagtattgtt tgaaatagga tctcttcttc tacttgttcg cttataaacc attgcaagaa
      601 caaggatgta gcacggtctt tttctttttc agctatttct actaaatcgt tgataagctt
      661 tgtaacagtc tgttcacttt ttaaagcagt ttgaaaagta gattcaagtg aattgaattt
      721 actttgaggt ttttctattg ctggaattat ggcttcggct tctgcattat taaggtaatg
      781 aacgaacttt aacaggtgtg tattttcctc ggttgcttgt tcgaaaaaga atgcggcact
      841 tccgtcatat cctgttcttt cacaccaaga tcccattgca gtatatgcat tgatggctga
      901 cgcttcatac gaaatttgat cattgatcgc tttttctatt tttgaagata ttctcatagg
      961 tacaactttg gtgtttttct tatatctata tttacgagat cgactttttt tctttatgat
     1021 actgataata agtgacaata tttaaagaat ggcaaagaaa gaaaaagaat ttgagtctat
     1081 ataaaaagaa agccagaaat cttggaaata tttgaataag taatatttcg gggaactcct
     1141 ttattaaatc aaaattgatt gatatttcga ttatctatct aggcatggta tgtcaaaacg
     1201 aagttgaatg aagtaaaatc ttattctaga tctctcagac tatgtttgtc cgtccttatt
     1261 ctctgaagaa tatcccaatt aatggcataa gtattgattt gcctgtttca gtatctacct
     1321 aagctgagta tttacatatt atgtaagttc gactttcact ggaacgtcaa taagtgaatt
     1381 atagtttcat agttttgaac tggggtcaga caattcttac tatagactag agatccccaa
     1441 ctatttgatc aaatgtttcc aatacattat ttaagtacac agtaacagtt cagtctaaat
     1501 atttagctgt gattgggaag aggcagatag atattctaaa aatcttaaat gatacaataa
     1561 agggcagcag agaaaggtct tgatcgtgat gtataagata tcctatagat tcaatcaatc
     1621 tgattatttt atcttgtcag aggtgatttt attgccagca acaacttggc ctcctatatt
     1681 ttgcatagtt ttcatgctga ataagctctt gttgtgaacc aaatacgcta tcgcaagatt
     1741 cacatctgta ggattgaaca tttgacatac ctgtgagaga tataatgcgg catttcatat
     1801 aaagtttaat ttcaatactt tgtgtcttaa ctaaaatcca actaatctac ttagatgagt
     1861 gattatatgc atattatcat catcatgtca aattacttta gaaaacatac ttttacatga
     1921 taaacttcga caaaaaggac tctgtttagt agggagtgcc tttgtctctt tgggttttga
     1981 aggcttcaat ataccactca aattcttcaa gaaatcttaa tacccttttg
//
LOCUS       DASPFX010000326         3561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1364220, whole genome shotgun sequence.
ACCESSION   DASPFX010000326 DASPFX010000000
VERSION     DASPFX010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1364220"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            421..615
                     /locus_tag="VD694_07070"
     CDS             421..615
                     /locus_tag="VD694_07070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12503.1"
                     /translation="MSLVGTFSTCSICGKRRIIASQRNKILSTQVGIDVYLECKDCAA
                     IPLWDRKTNEKKQKAFDHYQ"
     gene            1014..1325
                     /locus_tag="VD694_07075"
     CDS             1014..1325
                     /locus_tag="VD694_07075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12504.1"
                     /translation="MTIYSSSTNFASAVTNCYISGEKQVCITNFDSKPPHVTAVTLCD
                     KDGKNCTVHWLDNKVRVVTPEIQTAIKNVQIARSPENQTPNSNDNTNLKNDNGAGLSP
                     K"
     gene            1488..2000
                     /locus_tag="VD694_07080"
     CDS             1488..2000
                     /locus_tag="VD694_07080"
                     /inference="COORDINATES: protein motif:HMM:NF014037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mut7-C RNAse domain-containing protein"
                     /protein_id="HXW12505.1"
                     /translation="MCQTKYINQYSFIADAMLGKIARKLRIFGFDTVYDPNIDDMDIL
                     DSSKYYGRIVLTNDRTLFRRCKKKGIDTILLDNRTEVENLLTIFKSLDIESISSQKLP
                     HLCTCCNGILDSIMDKNSIKNQIPDRLLRSKDIFYKCNECNKIYWIGSHMERIAFLIR
                     AINTKLTAVN"
     gene            complement(2332..3402)
                     /locus_tag="VD694_07085"
     CDS             complement(2332..3402)
                     /locus_tag="VD694_07085"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HXW12506.1"
                     /translation="MDKQDYDNTRAEEFASKMFQFLNGGMLSLMISIGYKTGLFDIIS
                     QSKPSTSEEISQATNLNERYIREWLGAMVTGNIIEYDPSTEKYLLPKEHSPFLTRKSG
                     INNLAVLAQYVSLMGNVEDKIVECFRNGGGLPYSEYPKFQQLQAEETARIFDSKLTNQ
                     ILPLIPEINDKLNIGIKVLDIGCGRGHAINLMGKAFPKSKFTGCDISHEGISSAKEEA
                     KNLGLTNVQFEIKDALLVEELGKFDLITAFDTIHDQTQPTKVLNAINSSLNNDGFFLM
                     QDIAASSKVENNIDSLLAPALYTISTMHCMSVSLAFNGEGLGTMWGKELAVKKLTEAG
                     FKDIKVKNIEGDIMNYYYLSRK"
BASE COUNT         1149 a          615 c          627 g         1170 t
ORIGIN      
        1 attatgatat caaatgggca accgttagga caacttgaaa aatccataaa acacgggttg
       61 gaaacgtttc actttgactg atttacgatt actgacgaaa gataaccacg aaataacgat
      121 aatgagttac catattggta ataaatggcc ataaaatcaa aatatgatta gatcagtttt
      181 ttgggattat atgtcctagg atgaatgcga ctaatacaaa taatgaagaa gatgaaggta
      241 ttttggatcg ttcaattatg acattgttca agttcctgga gattgggttg tttcttacac
      301 atactagtaa ttcaacaagt ttgaaataag gaagaaaaaa agttttaaga catatgatta
      361 agaatattgt agtccataaa acatgagtta ccagtctaga aggagtgcat aatttaaaaa
      421 atgagtctag taggaacttt ctcaacatgc agtatttgtg gaaagcggag aataattgct
      481 agccaaagga ataaaatatt gtctacacag gttggaatag atgtttattt ggagtgcaaa
      541 gactgtgcgg ccattcctct ttgggataga aaaacaaatg agaaaaaaca aaaggctttt
      601 gatcattatc aataaaactc tagtcaatag aattcaatag ttcttataaa gatgtgatga
      661 ataaataatt acacggttct gcagtatttt ttccgatgct ttccttttat cattattact
      721 ctgtgctctt ttacaatttt tcaaagagga gcgaatcttg gatcgtattc cgaatttctt
      781 gaattctctt aatcctgttc tgttccttcc ttgctttctt tgggtcgata ttgagtggac
      841 cataagtttc gataactcat caatagctag atatcatatc agaatcaacc gctagaatct
      901 tttttgacat gtctatcttt tgtaatacca caagtttaat aagatgaact tactgtttac
      961 tggtaatgaa tagtaaattt gcaatcctca ttcttatatg attcatccta acaatgacca
     1021 tatatagctc atctacaaat tttgcctcgg cagtaacaaa ctgttacatt tctggcgaaa
     1081 aacaagtttg tattactaat tttgactcca aaccccccca cgtaacggct gtgactcttt
     1141 gtgacaagga tggcaagaat tgcactgttc attggttgga taataaagta agggtggtaa
     1201 ctccggaaat tcagactgca ataaagaacg tccagatcgc tagaagtccg gagaatcaaa
     1261 cccctaattc taatgataac actaatttga aaaatgataa tggtgcaggt ctaagcccta
     1321 aataagtaga attcactgtt ttctgatacg ggatattaaa tttacggtat ttatcctagt
     1381 aacctagatt tttactatcg cagtatatac ttcattgatt aattttgttt ccgctaatgc
     1441 cttcgatact atcaaatact ggtatacggt aactaaattt aatatacatg tgtcaaacca
     1501 aatatatcaa tcaatattct ttcatcgctg atgcgatgct tggcaaaatt gcgaggaaat
     1561 tgagaatatt tggatttgat actgtttacg atcctaatat tgatgatatg gatattttgg
     1621 attcatcaaa atattatggt agaatagttt taacaaatga tagaacgtta tttagaagat
     1681 gcaagaaaaa aggaatagat acaattcttt tggataatag aacagaggtt gaaaaccttc
     1741 ttactatttt caagtcttta gatatagaat ctatcagttc acaaaagtta cctcatttat
     1801 gtacctgctg taacggtata ttagattcaa ttatggataa gaattctata aagaatcaaa
     1861 ttccagacag actattgcgt tccaaggaca tattctacaa gtgcaatgag tgtaacaaaa
     1921 tctattggat aggaagtcat atggagcgaa tagcttttct aattagagct ataaacacta
     1981 aactaacggc cgtaaactaa ttcttcaatc tatttgctag gaatgaactg gaatagtatt
     2041 atacctatga tgtcattcac tgattaccat cattcattgg ttttgagaca tgaaaatagt
     2101 tgaatttaaa attcggaccc gaccagccat ataccgcgaa caaggattca taagcctcta
     2161 cagctcatgt tagagaacga tgaagtgtcc atgttgcggg gaggacttga tttgtgaaaa
     2221 ggagactgaa aaaataatat catatagatg tctgtcgtgt ggattaaaaa attctgaact
     2281 gaaaaggaat ctctgaagat attgtaatga atgatgtcta attgaattat tttattttct
     2341 tgacaggtaa tagtaattca tgatgtctcc ctcaatattc ttcactttga tatctttgaa
     2401 cccagcttcg gtaagtttct ttactgccag ttctttaccc cacatcgtac caagaccttc
     2461 tccattaaaa gcaagggaaa cagacatgca gtgcattgta gatattgtat atagtgcagg
     2521 tgccaacaga ctatcaatat tattctcgac cttacttgaa gcggctatat cctgcattaa
     2581 gaaaaaacca tcattgttca gcgatgagtt tatagcattg aggacttttg taggttgagt
     2641 ctggtcatgt attgtatcaa acgcagtaat gaggtcgaac ttgcctaatt cttcaactag
     2701 taacgcatcc ttgatttcaa attgaacatt tgttaatcca agattcttag cttcttcttt
     2761 agctgatgag attccttcat gagaaatatc acaaccagta aatttggatt taggaaatgc
     2821 ctttcccatt agattaatgg catggcctct tccacatcct atgtccagta ctttaatccc
     2881 aatgttcaat ttatcgttaa tttcaggaat taatggcaga atctgattgg ttaacttgct
     2941 gtcaaaaatt cttgctgttt cttctgcctg taattgttga aattttggat attctgaata
     3001 tgggagcccg ccaccattcc taaagcattc aacaatcttg tcttctacat tccccattag
     3061 tgaaacatac tgggctaaaa cagctaaatt attaattcct gatttccttg tcagaaaggg
     3121 agaatgctcc ttgggcagta agtatttctc tgtcgaggga tcgtattcga tgatattgcc
     3181 cgttaccatt gcacctagcc attctctaat gtaacgttca ttaagatttg tagcttgtga
     3241 aatttcctca cttgttgaag gcttcgattg agaaataatg tcaaacaacc ctgtcttgta
     3301 acctatgctt atcatgagtg atagcattcc accgtttagg aactgaaaca tctttgaggc
     3361 aaattcttcg gccctggtat tatcataatc ttgcttatcc aatcgttatc acttgtacgg
     3421 atctttcaat tttaacataa tgcacaaaca aattaaagag aattagatta tttccattcc
     3481 cagatagtcc ctgttgttgc accgtttggc cagtaggcgc gacttcgagt ttccctacgc
     3541 cgactgcacc ttcacggtgc t
//
LOCUS       DASPFX010000327         2396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1791160, whole genome shotgun sequence.
ACCESSION   DASPFX010000327 DASPFX010000000
VERSION     DASPFX010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1791160"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(418..552)
                     /locus_tag="VD694_07090"
     CDS             complement(418..552)
                     /locus_tag="VD694_07090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12507.1"
                     /translation="MDSPPPSFLRGGYGSETTTAIENITGRKPRSFAHFAKDYAKVIR
                     "
     gene            complement(811..>2396)
                     /locus_tag="VD694_07095"
     CDS             complement(811..>2396)
                     /locus_tag="VD694_07095"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HXW12508.1"
                     /translation="IGILIFSASPWIILAILSSLGMIAMFAETMILPAIPDFIEDFDI
                     SYENSSWILAVFLVMGAVMTPIAGKLADIYGKKKVLLIILAVYSLGLLLGALSTNFLF
                     MVIARAIQGIGISIFPIAFSIIRDKFVSEKLAVAQGIFSSMLSAGAVIGLVVGASVIE
                     NFGWRATFLFIIPIAVTLFAIIKKFIDVKENEKQHTVSDKNSEFCCRFIHVRKDILLS
                     ESTVTGSGNLQESIVKRDNQLHNSIDILGAITLSITIVSFLILLQLLEKANNFTEVAI
                     LSLAAIISLVLFVIIERKTETPLIDFKLLTNKVILSANIVNMVVGLTALMVVYQSIPI
                     LIRSPTPAGFGGDALSVANIQLPYMIVSLIFSIASGFVISRIGNLRPTVMGTIITTIG
                     FFILLLMHATQVSIAAVLVLIAIGLAFMQVGSMNVVLASTPKQFSGISLGMTLLIYLI
                     GASIGPVIAGIYMEANQVPLQADKPIPHTASTSSFPSSESYDLIFLTATLFSGASVAF
                     ALYMSRIVRQKGDINISIH"
BASE COUNT          793 a          419 c          460 g          724 t
ORIGIN      
        1 aggagaagtc ggtttaatca tagccggggt tggagtatct acgggagcgt tatctgctga
       61 tatttataca actgtcataa taatggtcgc attaactact attataacac ctatatggct
      121 aaaggttgcg tatcgaaagg aagaaaatgg gacagaacga atggtaaaac cgacatgatc
      181 ggtaaaaaga ttgtcttcct tgatgaatga cgacgataat cagttgattc ttaattgtga
      241 tgcatacatc atggatggaa tatatacaaa tgtaacttat accttaatgt cgttctaatt
      301 tagaccatta aaattaaatg tctacttctt atgatagagc cagacatata gtcgaagtag
      361 acgagagaat tttagctgtc tattatgatt atcgagaatg tgatatcttt tatcttatca
      421 tctaatgact ttagcgtagt cttttgcaaa atgtgcaaat gatcttggtt ttctccctgt
      481 aatgttttcg attgcagtag tagtttctga tccgtaacct cctctgagga aggatggagg
      541 cggactgtcc aaacaaagtc attcgtctgt gtatggaaaa ggctaccagg agaacataaa
      601 aaaagaaaaa tcttacttat agataacgag ctagggagga gggttagaac atgcagcatt
      661 ccgagttgat actttcaaca actctgctaa gatttagatg aaacaattgt cttcttgttc
      721 tataaggaaa aacagtaaat gtcttttata ataggttgtg caagagcttc taatcaatgt
      781 tggagaacag cagtatagtt tccaacatac ttagtgtata gagatgttga tatcaccttt
      841 ctgtctgacg attctagaca tgtatagtgc aaatgcgaca gacgcccctg agaatagagt
      901 tgcagttaga aagattaagt catatgattc tgaagatgga aatgaagatg ttgacgctgt
      961 atggggaatg ggtttgtctg cttgtaaggg tacctggttt gcttccatgt atatgcctgc
     1021 aattactggt ccaattgatg ctcctatgag atagattaaa agagtcattc ccaatgatat
     1081 gccgctaaat tgcttagggg ttgatgccaa gaccacattc attgaaccta cttgcataaa
     1141 tgctaagcct atggctatta agacaagaac agcagcaatt gatacctggg ttgcatgcat
     1201 caataaaagg ataaaaaatc ctattgtagt aataatagtt cccattacag taggccttaa
     1261 atttccaatt ctagatatta caaagccaga ggcaatagaa aatatcagag agactatcat
     1321 gtaaggaagc tgaatatttg caacacttaa tgcatctcct ccaaatccag caggagtagg
     1381 actacgtatc aagataggaa tgctttgata taccaccatt aatgcagtta acccaacgac
     1441 catgttaact atattggcgg agagtatgac tttgtttgta agtaatttga agtcaattaa
     1501 cggtgtttct gtttttctct ctattattac aaatagcacc aatgaaatta tggccgccag
     1561 cgaaagaatg gcaacctctg taaaattgtt agccttttct aggagttgaa gcaagatcag
     1621 aaatgatact attgtgattg ataatgtgat tgctcccaat atgtctatgg aattatgtaa
     1681 ttgattatcc ctcttaacga tagattcttg taggttaccg cttcctgtaa cggtactctc
     1741 tgatagcagg atgtctttcc ttacatgaat aaatctgcag caaaactctg agtttttatc
     1801 tgacacagta tgctgttttt cattctcttt tacatcaata aatttcttaa ttatagcaaa
     1861 aagtgtaact gctataggta taataaacag aaatgtggca cgccatccaa aattttcaat
     1921 aacactggca cctactacca aacctattac agccccagca gataacattg agctaaatat
     1981 cccctgagct actgcaagtt tttctgacac aaatttatct cttataatgc taaaagctat
     2041 aggaaaaata gagatgccaa taccttgtat tgctctagca attaccatga aaagaaagtt
     2101 tgtagatagg gccccaagta aaagtcctaa actataaact gcaagtatta tcagcaatac
     2161 ttttttctta ccataaatat cagctagctt gccggcaatt ggagtcatta cggcacccat
     2221 aactaggaat acagctaata tccacgatga attctcatat gatatatcaa aatcttcaat
     2281 aaaatcgggt attgcgggga gtatcatggt ttctgcaaac atggcaatca tacccaagct
     2341 actcaggatc gcaagtatta tccacggaga agcagaaaaa atgagaatac cgatct
//
LOCUS       DASPFX010000328         5007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1958803, whole genome shotgun sequence.
ACCESSION   DASPFX010000328 DASPFX010000000
VERSION     DASPFX010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1958803"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..204)
                     /locus_tag="VD694_07100"
     CDS             complement(<1..204)
                     /locus_tag="VD694_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12509.1"
                     /translation="MSPLRHCSIGGRTDKYKELNGDINKSEVTFSNNSECYCVSMIDI
                     VGSTRITSNLYSSGKIKKFYTVFI"
     gene            complement(242..943)
                     /locus_tag="VD694_07105"
     CDS             complement(242..943)
                     /locus_tag="VD694_07105"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HXW12510.1"
                     /translation="MLFPNMGITEIQNPISLNLNVPENQDFVNQRDDITFSEKASMCC
                     VGFVDMIDSTRITAGLPTHQMSRYYSLFINWVSSVIRGYGGEVVKNTGDGLLFYYCSV
                     GDSPTKADSHAKTVRNCLNSAITLSILHQNVNKKFISEKLPELNYRISLDYGEVSFAQ
                     TVDSTTFDIFSTTVNLCAKINKVANPNKVIIGGDLYRIARNLRGYDFQEVKQTISIWN
                     RAYPLYTVSEAKLSW"
     gene            1109..1768
                     /locus_tag="VD694_07110"
     CDS             1109..1768
                     /locus_tag="VD694_07110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12511.1"
                     /translation="MPSALDRLLGQALESMIREKLGQKTCEKIEARLRERYNLDLTAS
                     INDFYTLDATLREFFSSGADAIEEDFANQLISINTPTKGRHWISIENRELAELIVATY
                     GDKEKRILLEAAFTNPSVILDILEAAHIPKSSGYRIINQLVETGLLTTQGYAESSDGK
                     KVNKYTALFEKVNIVINTNGLIFNGDIPLPTLPIVEVLLKENILNESQILRVLLRGKK
                     L"
     gene            1820..2575
                     /locus_tag="VD694_07115"
     CDS             1820..2575
                     /locus_tag="VD694_07115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12512.1"
                     /translation="MEPKRGLNYKVLLLIGALAVIYQTFNYLLPENEGEMSPIDYVFT
                     ISIVTCAIASFIVSTRYGRSAVFGQAYFALGIAFTAYAIGDIIYNFQTTVLQIDPYPS
                     IADIFFFAQYPFIIFHLVRNIKFFRRKISRVTKVWLAAIPVMIVLLYSYFTFQQDGYS
                     LFDYYYGLPFVAASATSLSFAILGMQVFRQSLLASVWSLLAVGIFLNTFGDINYYHLE
                     IFGLYTRTHFVNVLWFLAPLIITYSLYRHYKII"
     gene            complement(2655..4031)
                     /locus_tag="VD694_07120"
     CDS             complement(2655..4031)
                     /locus_tag="VD694_07120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12513.1"
                     /translation="MKQLRVSAEIYDRLKTQSRFTLQAIIVPSCITILLFYIITYSYS
                     EISLLNGLPGVVILTASTIAIVKLLFFTKLEKSELHKFGSLLIGTFCFLIGEILYFYQ
                     QYFLQINIPYPSVADVPYLLASLLFSYFLLSCLFSLIIRKGLNPLSIILASSVAIFPL
                     YLVFSSAYNFSINLSSEIDFIVNSLYYVFDALMLIPALVILLNLEKKDQFIFHWMYIT
                     VALILLVIGDVGYTYFSIISESLLQEFEWLWSIVYALGYLFLGIGIYWFDRIKNILEV
                     KNINTFLEMDEVDRLKNSSKNGIIGDKRTEYSEHIIGYENFVEKLQDFVERSKQIKIL
                     FYGKYWLVDEKVGLILDEIQQRSIVTPIQVKILIPISQNSFESLISFTDNRNILVSFF
                     DRSMSSDSLVFIFEEKYVAILNKKPTSQNVDNNTVFYGLITNKGTAVWSHVAAFEKIR
                     LVEKAVNL"
     gene            complement(4031..4495)
                     /locus_tag="VD694_07125"
     CDS             complement(4031..4495)
                     /locus_tag="VD694_07125"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HXW12514.1"
                     /translation="MPPRRRLDKVIQVLKSGNERDESIRWDCIWLAGEITEIVRKDDP
                     IYNEIADLMVWVLNNDDNGIVRHEAAFQIGLHNMRAKIPDLVNSILNDRSNLVKHEAI
                     EALGLLRDHGSKETLIKMLEDKGEAVSETAAFVLKRLERLKDRGEYKGEAIL"
     gene            complement(4532..>5007)
                     /locus_tag="VD694_07130"
     CDS             complement(4532..>5007)
                     /locus_tag="VD694_07130"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HXW12515.1"
                     /translation="ILSALCNALAIIFFAKLIVRYNPTEVSGWIMLMSGLIINVVQYI
                     FYPPHLSAMDWLYLIGFSFIALAAFTLYNVSMKRIGTSMTSIITSSSLVLTVVIQLAI
                     VPFGIAFSLPSNLVLALLGGGISIVGICISSKAEQKREKTEEKVIEKEKEVIITR"
BASE COUNT         1601 a          939 c          858 g         1609 t
ORIGIN      
        1 gataaagaca gtgtaaaatt tcttaatttt ccccgagctg tataggttcg atgtgattcg
       61 ggtagagccg actatatcta tcatcgaaac gcagtagcat tctgaattgt tggaaaaagt
      121 aacttcggat ttgttgatat caccatttaa ctccttgtac ttgtcggttc gtcctccgat
      181 actgcagtga cgcagcggag acatcctagt gacacgtatc tgtaaagtca cgttccaaca
      241 atcaccaact aagctttgct tccgagactg tatagagagg atacgctcta ttccagattg
      301 aaattgtttg ctttacttct tgaaagtcat agccgcgtaa attcctggca atccggtaca
      361 aatctccacc gattatgacc ttattggggt ttgccacttt gtttattttg gcacaaagat
      421 taactgtcgt actgaatata tcaaacgtag tcgagtcgac tgtttgggca aaagacactt
      481 ccccataatc caagcttatc cgatagttaa gctccggcag cttttcagaa ataaatttct
      541 tattaacatt ctgatgcagt attgataatg taattgcaga gttaaggcaa tttctgacag
      601 ttttagcgtg tgaatcagct ttagtgggcg aatcaccaac tgagcaataa tagaacagca
      661 gcccgtcacc tgtattctta acaacctcac caccgtatcc tcttataaca ctgcttaccc
      721 aattaataaa tagagaataa tacctgctca tttggtgtgt aggcagccca gctgtaattc
      781 tcgtcgagtc tatcatgtcg acaaatccta cgcaacacat tgaagccttt tccgaaaagg
      841 taatgtcgtc tcgctggtta acaaagtcct gattttcagg cacgttgaga ttgagactga
      901 ttggattttg aatttcagtt attcccatat ttgggaataa catctcgcta ttaaaaaact
      961 tttcatgtta attacttaca ttttatataa gcatatcgtc actgattcta aaatttaaga
     1021 atatattgag aaatgattga cccattaagc ttttttaaga ataaccgaaa taaaattaaa
     1081 tatgcgcctg ataatataca gccaactaat gccttctgca ctagatcgct tgcttggaca
     1141 ggcacttgaa tcaatgataa gagaaaaact aggtcaaaaa acttgtgaga aaatcgaagc
     1201 tcgactgcgt gaacgctata acctagactt gaccgcgtcc ataaatgact tttatacttt
     1261 ggacgcgact cttagagagt ttttctcttc aggagccgat gctattgagg aagattttgc
     1321 caatcagttg atttctatta acacacctac gaaaggaagg cattggatat caatagagaa
     1381 tagagaattg gctgagctca tcgttgcaac ttatggagac aaagaaaagc gaattctcct
     1441 agaggcagcc ttcaccaatc cttcagtcat acttgatatc ctagaagcag ctcacatacc
     1501 aaaatcatca ggttacagga taattaatca gttggtcgaa accggtcttc tgacaacaca
     1561 gggctacgcc gaatcgtcag atggcaaaaa agtgaacaag tacacggcac tttttgaaaa
     1621 agtgaatatt gtaataaata caaatggatt gatttttaat ggagatatcc cattacccac
     1681 acttccaata gttgaagtgt tgctcaaaga gaatatcttg aatgagagtc aaattcttcg
     1741 agtgctttta agaggaaaaa agttatgacc taggaatact aaaccattgt aaatgtcgga
     1801 tagtacaagc gagagtacta tggaaccgaa aagggggtta aattacaagg tattattgct
     1861 tatcggagca ctagcggtaa tttatcagac gttcaattat ttacttcctg aaaatgaggg
     1921 tgaaatgagt ccaattgatt atgtttttac aataagcata gtaacctgtg ctatcgcctc
     1981 gtttattgtt tcaacaagat acggccgttc ggcggttttc ggacaggcat atttcgcgtt
     2041 gggaattgca ttcacagcgt atgcgattgg tgatatcatt tataactttc aaaccacagt
     2101 tttacaaata gatccttatc catcaatagc agatatcttc ttttttgctc aatatccatt
     2161 cataattttt catctagtac gcaacatcaa gttcttcaga cgaaaaatca gtagagtgac
     2221 aaaagtttgg ttggcagcta ttccagttat gatagtattg ttatactcgt attttacatt
     2281 ccaacaagat ggatatagtt tatttgatta ttattacgga ttgccattcg ttgcggcatc
     2341 tgcgacctcg ctgtcttttg ctatcctagg catgcaagtt tttagacaaa gtttacttgc
     2401 ttctgtttgg tcgcttttag ctgttgggat tttcttaaat accttcgggg atatcaatta
     2461 ttatcatctt gaaatatttg gactctatac gagaactcat tttgtaaatg ttttatggtt
     2521 cttggcacct ttgattatta cttattctct ttacagacac tataaaataa tctgatatca
     2581 agcttattta ttaagattat tgcaaacggt ctgatattag aactagtaac gttacatcga
     2641 tatataatta caaatcacaa attaactgcc ttctcgacta gccgtatttt ttcaaatgct
     2701 gcaacgtgtg accatactgc agtacctttg tttgtaatta gtccataaaa tactgtatta
     2761 ttatcaacat tttgcgatgt cggtttcttg tttagaatcg cgacatattt ttcttcaaag
     2821 ataaatacga gtgaatctga actcatggat ctgtcaaaaa aactaactaa aatgttcctg
     2881 ttatcagtaa atgatataag actttcaaag ctgttttgac tgattgggat aagaatttta
     2941 acttgtattg gagtaacaat tgacctttgt tgtatctcat cgagtatcaa gcctactttt
     3001 tcatcaacta accaatactt gccatagaat aaaattttga tttgttttga tctttcgaca
     3061 aaatcttgga gcttttcaac aaagttttca tatccaataa tgtgctcaga atattcagtt
     3121 cgtttatcac caatgattcc attctttgac gaatttttta ggcgatctac ctcatccatt
     3181 tctaaaaatg tatttatatt tttaacctca agtatattct ttatccgatc aaaccagtaa
     3241 attccaatcc ccaggaacaa atagcctaat gcatagacaa tggaccatag ccactcaaat
     3301 tcttgtagta gtgattcgct tattatagaa aaataggtat aaccaacatc accaattact
     3361 agcagaatta gtgctactgt aatatacatc caatgaaaaa taaattggtc ttttttttcc
     3421 aaatttaaga gtataaccaa agcaggaatt agcattaacg catcaaatac atagtaaaga
     3481 gaatttacga taaagtcaat ttcagaggat aaattaatac taaaattgta agctgaagag
     3541 aatactaagt ataagggaaa aatagctaca gaggaagcta aaataataga aagggggttg
     3601 agcccttttc taattattaa tgaaaataaa catgaaagta aaaaatacga gaaaagtaaa
     3661 cttgctagca agtatggaac atctgctaca gatggatagg ggatattgat ttgcaaaaaa
     3721 tattgttgat aaaaataaag tatttctcct ataaggaaac aaaatgttcc tattaataat
     3781 gaaccaaatt tatgtaattc tgacttttct aacttagtaa aaaataataa ttttactatc
     3841 gctatagtag aggcggttag aataactaca ccaggtagac catttagcag tgaaatttca
     3901 gaataagagt atgtgataat ataaaaaagt agaatagtta tacacgaggg cactataatt
     3961 gcctgcaaag taaacctact ctgagttttc agtcgatcat atatttcagc agatacacgc
     4021 aattgcttca ttacaatatc gcttctcctt tgtattctcc tctatctttc agacgttcaa
     4081 gccttttcag tacaaacgct gcagtttcac taactgcttc acctttatct tctagcattt
     4141 ttatcaatgt ttctttactt ccatggtcac gcaacaaacc caaagcttct atagcttcgt
     4201 gttttacaag attactcctg tcatttaata tcgagttaac caggtcagga atcttagctc
     4261 tcatgttgtg tagtccaatt tgaaatgcag cttcatgtct aacgatacca ttgtcgtcat
     4321 tattcaatac ccaaaccata aggtctgcta tttcattgta aatagggtca tctttgcgaa
     4381 ctatctcagt tatttctcct gctagccaaa tacaatccca tcgtatagat tcatctcttt
     4441 catttccact ctttagtact tgtataactt tgtcgagcct ccgtcttggt ggcaagctcc
     4501 tcatattgta ttcgtcaaag acaaattcca tttatcttgt tataatcacc tccttttcct
     4561 tttctataac cttttcttca gttttctccc ttttctgttc ggctttagaa ctaatgcata
     4621 tgccaacaat actaatgcca ccacccaaca atgccaaaac taggttactg ggtaatgaaa
     4681 acgctatccc aaaaggaacg atggctaact ggattacaac cgtcagaact agagaggatg
     4741 atgttattat cgaagtcata gatgtgccta tacgtttcat actgacattg tagagtgtaa
     4801 acgctgctaa cgctatgaat gaaaatccta tcagataaag ccagtccata gcagataaat
     4861 gtggtggata gaatatgtat tgaaccacat taatgattag acctgacatg agcataatcc
     4921 acccacttac ctcggtgggg ttgtatcgga caatcagctt tgcaaagaat atgattgcaa
     4981 gggcattgca cagggcagac aatatgg
//
LOCUS       DASPFX010000329         2163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1805109, whole genome shotgun sequence.
ACCESSION   DASPFX010000329 DASPFX010000000
VERSION     DASPFX010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1805109"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VD694_07135"
     CDS             <1..615
                     /locus_tag="VD694_07135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12516.1"
                     /translation="IRESNPNIYEDLVKLSEKVGKGPEFRQIVVARSDRTFRRLNIAD
                     LCNDNKIKILDPKHGIKVTFLTNDSGHEYASKFLPESDLVEYIITGIDFDMYLAMIKF
                     RKLHGTDMILNDGGRIMSNSVRDQGLLGEERVTLEPYPGDQFIPYSSKLDQQNVLGME
                     GIGIDGGEIEYGIKIHSTRINNEFANVYLYPLRAKSEDDSKMHE"
     gene            complement(670..1872)
                     /locus_tag="VD694_07140"
     CDS             complement(670..1872)
                     /locus_tag="VD694_07140"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12517.1"
                     /translation="MYYIGTLNCIKPLMYKKLLSFRLTINRIHDNLSPVRGISVGELI
                     EPPIIVSPDEPLSKIISALIETDSYDVFIELSDRTAALSIRDIMGAKDIKTTKPSLVG
                     KIIPELHKESLVGEAARIMSHYRLRTLPIVHNGKIQGQVSAKRIVDLINKQLVENKIR
                     INASNIMTGDPIVIDSRKTVSAAKSLMKRRRIDHLPVVDNSRLVGIITSSDIMKLISP
                     SERIGKKSIGVNDAEDRLSIEVSGLANDDVITANVDDTLVSVCDKMTRAGSSYCIITV
                     WDEIQGILTYRDIVAMLGEQLEEDIPMFIVGLPDEPFDAELAKSKFANITKFMRKIHP
                     DIEQARCHIKLRKISGSRKRYEIDVHIRSTHGNISYTNVGWDLAKLFDEMNQALKKRI
                     ANKNKKNL"
BASE COUNT          672 a          393 c          377 g          721 t
ORIGIN      
        1 ataagagaat ctaatccaaa tatttacgag gatttggtca aattaagtga aaaagtaggt
       61 aaaggcccgg agttccgtca aatcgttgtg gccagatctg acaggacatt tcgtagactt
      121 aatatcgcag atctatgcaa cgataataaa ataaaaattc ttgatcccaa acatggtatc
      181 aaagttacat tcttgacaaa cgattcagga catgagtatg cttcaaaatt tcttccagaa
      241 tcggatctag ttgaatatat tattactgga atagattttg atatgtactt agccatgatt
      301 aaattcagaa aattacatgg cactgacatg attctaaatg atggtggccg catcatgtct
      361 aattctgtac gggatcaagg attactagga gaagagaggg ttacgctaga accctaccca
      421 ggagatcagt tcatacccta tagttccaaa ttagatcaac aaaatgtact tggtatggaa
      481 ggaataggaa ttgacggggg agaaattgaa tatggaataa agatccattc tacaagaatc
      541 aataatgagt ttgccaacgt atacctctac ccgctgagag caaaaagtga agatgattcc
      601 aagatgcatg aataatgtcg attaagatct attactcata atttaatcat gattattcgt
      661 gtcattatat caaagatttt tcttattttt gttggcaatc ctcttcttta gggcctgatt
      721 catctcatca aacagttttg ccaaatccca gcccacgttg gtataggaaa tgttaccatg
      781 ggtcgatctt atgtgtacat caatttcgta cctcttccta gatccagata tttttcttaa
      841 tttaatatgg catcgggctt gttctatgtc agggtgaatt tttcgcataa acttggtaat
      901 attcgcaaat ttcgattttg caagctctgc atcaaatggt tcatcaggta gtcctacaat
      961 aaacattgga atatcttcct ccaactgttc tcctaacatg gcaacaatgt ctctgtaggt
     1021 taaaatcccc tgaatctcat cccacacagt tataatacag tagctagatc ctgccctcgt
     1081 cattttatca catacactca ccagagtatc gtctacattt gcagttatta catcatcgtt
     1141 ggctaggccg gagacttcaa ttgatagcct atcctccgca tcgtttactc cgatggattt
     1201 cttacctatt ctttctgaag gggatattag tttcatgatg tcagatgatg ttatgatacc
     1261 tactaggcga ctgttatcaa caacaggcag atgatcaatt cttctccttt tcattaacga
     1321 tttagcagca gatacagttt tgcgagaatc gattacaatt ggatctcctg tcataatgtt
     1381 agatgcgtta attcgtattt tattttctac gagttgttta tttatcaaat caacaatccg
     1441 cttcgcagaa acttgaccct gaatttttcc attatgaact attggtaggg ttctcaatct
     1501 atagtgactc ataatccttg ctgcctctcc aaccagactc tctttatgca attcgggtat
     1561 tatttttcca accaaggatg gttttgttgt cttgatgtct tttgcaccca tgatgtctct
     1621 aatacttaat gcagctgtcc tgtcagataa ctcaatgaag acatcatatg aatcagtttc
     1681 aatcaaagca ctgatgattt ttgataatgg ttcatctgga gaaacgatta ttggaggttc
     1741 aattagctct ccgacagaga taccgcgaac tgggctgaga ttatcatgaa ttctgttaat
     1801 agtcaacctg aatgataata atttcttgta cattaaaggc tttatgcagt taagcgtccc
     1861 gatgtaatac actaaatctc aacaaatcac aatataatca tattgaatat tgaatttgac
     1921 caaatttttg taaattttga tgaaagattc aaaatgatat cacagaagaa aagtagcaaa
     1981 aaatattttc taaattatta tttgttttca atcattgttg atgcctattg atcttttttt
     2041 atcaatttta tttgctgtcg atctaatgat attagtctgc aaagtttttt agaaaggaat
     2101 agtggtacat gattgtaaga ttagctatgc caaggtctaa agcacaagtt tctagcaaaa
     2161 gca
//
LOCUS       DASPFX010000330         2337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1026965, whole genome shotgun sequence.
ACCESSION   DASPFX010000330 DASPFX010000000
VERSION     DASPFX010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026965"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VD694_07145"
     CDS             complement(<1..201)
                     /locus_tag="VD694_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HXW12518.1"
                     /translation="MTKLDDLLAYEVVEGLTEGQFTAEEYVISILKRIEKVEPKVHSF
                     ITLDTEGALSSAKLIDKKIREKE"
     gene            complement(203..475)
                     /gene="gatC"
                     /locus_tag="VD694_07150"
     CDS             complement(203..475)
                     /gene="gatC"
                     /locus_tag="VD694_07150"
                     /inference="COORDINATES: protein motif:HMM:NF014716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HXW12519.1"
                     /translation="MISKENLEHLAQISRINLTENELEKFPKQLEKTIEYIDILEQFA
                     TDDSVVIDLQELEFRELRKDEANMSDEKQLSKNITEDGFLRGPKMK"
     gene            complement(509..1828)
                     /gene="aspS"
                     /locus_tag="VD694_07155"
     CDS             complement(509..1828)
                     /gene="aspS"
                     /locus_tag="VD694_07155"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HXW12520.1"
                     /translation="MNSPDLQTWKRTHYSKDIDSSIDGKEVIIVGWISSVREHSNIKF
                     LTINDRFGNIQVILKKNQYPESLSSEELKIREHASIAIKGKVRGEPKAPNGIEIIPID
                     FKILSLANKNSPIVIQSRKGVGIDTRLDLRAIDLRRPYLQSIFGLRYTVINSCRKFLG
                     DEGFIEVNTPKIIATATEGGATLFPIFYYDREAFLTQSPQLYKEQLTMAFENVFEIGP
                     IFRAEPSRTNRHLSEATSIDIEKAYADYNDIMEILEKMIHFIWDEVRNKNKSNLDYLK
                     IELPELSLPFKRYRYSDLIEKLQKSGESIEWGDDISQQKLRNLNDDDMKYFYFIIDWP
                     TSIKPFYVKPKSTGTECESFDLMYGNLELSSGSTRIHDKSELTERMKKQGLNTGAFDF
                     HLKVFDYGMPPHAGFGMGLERLLMSMCGVDNIRDVVLFPRDIDRLSP"
BASE COUNT          697 a          437 c          375 g          828 t
ORIGIN      
        1 ttctttttct cttattttct tgtctataag cttcgcagaa gataaagctc cctcagtatc
       61 caatgtgata aatgaatgta cctttggctc gactttttct attctcttaa gtatagagat
      121 aacatattct tcagcagtaa actgaccttc agttaggcct tcaactactt catatgcaag
      181 caggtcgtct agttttgtca ttctatttca tcttaggacc tcttaagaag ccatcttctg
      241 taatgttttt gctgagttgc ttttcgtcag acatgtttgc ctcgtccttt ctcagctctc
      301 taaattccaa ttcctgcaag tctattacaa ctgaatcatc agtagcaaat tgttcaagta
      361 tatcgatgta ttctattgtc ttttctagct gtttgggaaa tttttcaagt tcattttcag
      421 ttaaattaat tcgtgatatt tgagcaagat gttctaaatt ttcctttgag atcatgctat
      481 tgtcatcatt ttatagatat attatttgtt aaggtgacaa cctatcaata tctcgaggaa
      541 acaagactac gtccctaata ttatcaacac cacacatgct catcagtaaa cgttctaggc
      601 ccatgccgaa cccagcatga ggtggcattc cataatcaaa aacttttaaa tggaaatcaa
      661 acgctcccgt gtttaaccct tgttttttca ttctttcagt tagctcgctt ttatcgtgga
      721 ttcttgtact tcctgaagat aactctagat ttccgtacat caaatcaaaa gattcgcact
      781 ctgtacctgt tgattttggc ttaacataga agggctttat tgaagtaggc cagtcaatga
      841 taaaataaaa atatttcatg tcatcatcat tgagatttcg taatttttgt tgcgagatgt
      901 catcccccca ttcaatagat tcacctgatt tttgcaactt ttctatgagg tctgaatatc
      961 tgtacctttt aaacggtagt gacaattcag gtaattctat tttcaagtaa tcaagattgg
     1021 atttattctt gtttctcacc tcgtcccaaa taaaatgaat catcttttct aaaatttcca
     1081 ttatatcatt ataatcagca tacgcttttt caatatcaat cgaagtagct tctgacagat
     1141 gcctgtttgt tctcgaaggt tcagctctaa agattggacc tatctcaaat acattttcaa
     1201 atgccattgt gagctgttct ttataaagct gaggactttg agttagaaat gcttccctgt
     1261 catagtaaaa gataggaaaa agagtcgcgc cgccttcagt tgcggtggca attattttag
     1321 gggtattaac ttctatgaaa ccttcgtctc caagaaattt cctgcatgaa tttatcacgg
     1381 tgtatctcaa accaaaaatc gattgaagat aaggtctacg aagatctatt gctcggagat
     1441 ccaatctggt atcaattcca acccctttcc tactctgaat aacgatagga gaatttttgt
     1501 tagccaatga caggatctta aaatcaattg gaattatttc aattccgttt ggagctttcg
     1561 gttcgcctct aactttacct tttatagcaa ttgaagcatg ttccctaatc tttagttctt
     1621 ctgatgaaag cgattcggga tactgatttt tctttaagat aacctgaata tttccaaatc
     1681 tatcatttat cgtgagaaac ttaatgttac tgtgttcacg taccgaagaa atccatccca
     1741 ctattatcac ctccttgcca tctatcgaac tatcgatatc tttggaatag tgtgtccttt
     1801 tccaagtttg aaggtctggg ctattcaaat tgatgaacct tgataatttg aactttaatg
     1861 agcgggttaa tttaactttt taacacaaat attccaataa tgatgacaaa ccttactcca
     1921 agcggaaaat cactcgtccc ggtagaaatt ttgtgaaata ttagttcaga gcatacaagt
     1981 gaacagttat agagtctaat tgtccaatgc gattcaggag aaaacaaatg aattttcgtc
     2041 gcaaacatgt aaatggatat atactatggt acaagatttc aaaattgagt taatttcttc
     2101 tcaatcgtga tgttattcga tagttacaaa agcattaata acattgtcaa ataatttgtg
     2161 tgaaatggaa aaacagtcat tattatcact tttttcttct aatccggata aatattataa
     2221 agtctcacta tttaatgaaa aaggattcaa gaggcaaggt tgcaagttat gtggaaaatt
     2281 cttttgggcc attaatgaga ggcaatcgtg tcctgaacat gataactata gctttat
//
LOCUS       DASPFX010000331         7274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_936772, whole genome shotgun sequence.
ACCESSION   DASPFX010000331 DASPFX010000000
VERSION     DASPFX010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7274
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_936772"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..257
                     /locus_tag="VD694_07160"
     CDS             66..257
                     /locus_tag="VD694_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12521.1"
                     /translation="MLIYPIAFTNRTKKTMRVHTASLKGKKQHDLTYDEVDLKKLMQY
                     YRFEKREELLDFLKAQCLQ"
     gene            352..510
                     /locus_tag="VD694_07165"
     CDS             352..510
                     /locus_tag="VD694_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12522.1"
                     /translation="MEKAREKKHVHYDDETLEKMKRYYKIDDHDELLRFIKTHGLKNY
                     HLDVDNSR"
     gene            558..1772
                     /locus_tag="VD694_07170"
     CDS             558..1772
                     /locus_tag="VD694_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HXW12523.1"
                     /translation="MYFSHLITQLGPTFLIQDFAVVMIVAAVMVFVTHKLKQPMVIGY
                     LLAGMVIGPFTPPFSLIHDVSTINTLAELGIIILLFVIGTEFPITKLKSVGRISLIVG
                     IAESLGTLLITFFVGQTLGFSQSDSMFLALAMSITSTVVTVKILEELNMINEKSSVLI
                     MGILIVEDVIVITMLGILQSLALTAAVSFVQVILSVGIVVGFIAGILILGSRYLPSLI
                     DKIARKTDYSVLIIVILGLAFGLSFGAIELGLSPVIGAFLAGVLVAESNSAGIARVIT
                     IPLRDVFAALFFVSVGALVDVSKIPLFIIPALILIVTSFAAKMVIVIPCLIKAGYDTT
                     TAVRTGLGLSSARGEMSLIVGKGGQDVGAVSSYILPILGVVTIVTTFVTPYILKLGTK
                     LNISSNTAEEKK"
     gene            complement(1836..2792)
                     /locus_tag="VD694_07175"
     CDS             complement(1836..2792)
                     /locus_tag="VD694_07175"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HXW12524.1"
                     /translation="MNQIKPILITLLLIMYVGLIFSNFVNAEEKIEISSGSPFVDSKG
                     KLNIIGVVTNLGTTSEHVIVGLDVQKKIDNSKTTLQDNTFSKIIYPGKESPFKFKINE
                     DYDVIGKPYVLQTESTTDPYYNIILQNYSNFPVGENRELVGTLKNNGSVVVQNISVYA
                     SVHDKNGTQIDSIHSNIIPILKPGEVKPFSARPDNTIVKKANYFSCAGFDPDTPINTL
                     DLGNGKFLPYGLESVARISNFNYDNSTDSISFNADHYNPSGGSVTLKIPQLDANQVIT
                     IFLDNLGVTDAQISKNGKTITTNIFIPPNEHTVRISGVLNQS"
     gene            complement(2877..3746)
                     /locus_tag="VD694_07180"
     CDS             complement(2877..3746)
                     /locus_tag="VD694_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HXW12525.1"
                     /translation="MTEVLSITQDFIKNHVTPRDQNSKKGDNGIVLVVGGSSLYHGAP
                     LLASLSALRAGADLVYTAVPKIIVNAIRSYSPNVIALPMMDSSLTVGSANRLIKSLPK
                     TPHTAAVGMGMAISKTEALNSLVKKLRENGTKLVLDASALVPQVLSEITETDTIITPH
                     PGEFKRIFNEDVGYGEKEIISIVSKMAIKHKIAIILKGWLNVIADARGKVAAIRRPSP
                     AMNVGGTGDVLAGLVAAIYSRTNSSFDASALAVYFNGVAATIATEKVGLHIMATDLIE
                     SIPNAMKPFDKIA"
     gene            complement(3959..5032)
                     /gene="amrS"
                     /locus_tag="VD694_07185"
     CDS             complement(3959..5032)
                     /gene="amrS"
                     /locus_tag="VD694_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HXW12526.1"
                     /translation="MASVEIFGKEAELFCNLPNGRIRCTACARKCEIPEGKIGLCGIR
                     GVNNNKLWLYVYGKVIAGQIDPIEKKPVIHYMPGSSIYSIATTGCNWLCKYCQNYDIS
                     QRRKIEGSEMTPSQVVAKAQSYGAQGIAYTYNEPSIFMEFAKDCGIEAHKEGIFNIFV
                     SNGYDTPESVNMMSKFLDCITVDFKGSGNQEFVRRYIGIPSSEPIFSTLKEIKSKTKI
                     HIEITDLIVPQVGDNLDSAKQLCRFVYDELGPDIPIHFLRFHPDYKMMEFDSTPVLTL
                     EKHCEIAKKVGLKYVYLGNVPGHKLENTYCPECGYLAIQRYGFNIEGWNLDERNCCRQ
                     CGYNIPIVGSLQKKTKRRFQFVE"
     gene            5263..5338
                     /locus_tag="VD694_07190"
     tRNA            5263..5338
                     /locus_tag="VD694_07190"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5299..5301,aa:Glu,seq:ctc)
     gene            complement(5720..6316)
                     /gene="endA"
                     /locus_tag="VD694_07195"
     CDS             complement(5720..6316)
                     /gene="endA"
                     /locus_tag="VD694_07195"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HXW12527.1"
                     /translation="MSSEADQNSEFQNIIEGFMDKKCSIKIIDTRSQDQLRNKGYGDK
                     ENNDYFLETYEALYLLYLKKLVITNGSMDNFGSLLKQTLKHDKEIVTKFLVYRDLRSR
                     GYVVKEGFGFGADFRVYERGGYEKKRAKFVVFCINEGINVKVGELSRNVREIETMGKN
                     AIAAVVERRGEVIYYKLTNMKFNENKKQETNLTLQERK"
     gene            6371..6886
                     /locus_tag="VD694_07200"
     CDS             6371..6886
                     /locus_tag="VD694_07200"
                     /inference="COORDINATES: protein motif:HMM:NF003239.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HXW12528.1"
                     /translation="MKGVNYRETKGMPYVRREYISGKPQLKIARFSSGQSKENYDFKL
                     ELIVSEKMQIRHNALEAARLAANKAMAQAGDLSFFSRLTVYPHLVLRENKMIATAGAD
                     RLQEGMRRAFGKATGLAARVKPEQSIFEAYVSKENLELAKRGFKVASSKLGCPTSVRV
                     TELGNKSKENN"
BASE COUNT         2275 a         1358 c         1222 g         2419 t
ORIGIN      
        1 agtcaaaaaa atccttaata agaggcatga atttatggaa ttctcatctt ctcaaaatga
       61 gataaatgct aatatatcca attgccttta ctaatcgtac aaagaaaaca atgcgcgttc
      121 atacagcgtc tcttaaagga aaaaagcaac atgatttgac atacgatgaa gttgatttaa
      181 agaaattaat gcaatattat agatttgaaa aacgagaaga attgctagat ttcctaaaag
      241 cccagtgtct tcaatagcat acaatattaa attcattatt ttatgctaaa cactattttt
      301 tcatcatatt tatttgaaaa atttaagtgc gattacatat tttaataagg tatggagaaa
      361 gcaagagaaa aaaaacatgt tcattatgac gatgaaactt tagaaaagat gaaaagatat
      421 tataaaattg atgatcatga cgaacttttg cgtttcataa agactcatgg tttaaagaac
      481 tatcatcttg atgtggataa ctcacgatag ctaatcccat cgctagaatt acatattgat
      541 tatttggtag taacaccttg tatttttcac atctcattac acaacttggt ccaacctttc
      601 taattcaaga tttcgcagtt gtcatgatag tagccgctgt aatggtattt gttactcata
      661 aattgaaaca acccatggta atcgggtact tactggctgg aatggttatt ggtccattta
      721 ctccaccatt tagcttaatt catgatgtta gtacaatcaa cacattagct gaactaggaa
      781 taatcattct tttgtttgta attggaactg agttcccaat tacaaaactt aaatctgttg
      841 ggagaatatc actgattgta ggtattgcgg agtctcttgg aacgctatta atcacattct
      901 tcgttgggca gactctggga ttttcacaat ctgactcaat gtttctggcc cttgccatgt
      961 caattactag tactgttgtt acagtaaaga tactagagga gttgaacatg ataaatgaaa
     1021 aatcaagtgt attaataatg ggaatactaa ttgttgaaga tgttatagtc attaccatgt
     1081 taggtatact acaatctctt gctttaactg cagcagtatc atttgttcag gttatattat
     1141 cagttggaat tgtagtgggc tttattgcag gaattttgat attgggttca cggtatttac
     1201 cgtctcttat agataagatt gctagaaaaa ctgactactc agtcttgata atagtaatat
     1261 tgggtcttgc atttggtcta tcatttggag caattgaact tggattatca ccagtaatcg
     1321 gagcattttt ggccggtgta ttagtagctg aatcaaacag cgcgggaata gcccgagtca
     1381 taacaatacc gcttagggat gtatttgcag cattattctt cgtatcagta ggtgcgcttg
     1441 tggatgtatc aaaaatacca ctatttatca ttccagctct catcctcata gttacctcat
     1501 ttgctgcaaa aatggtaatt gtcatacctt gtctaataaa agctggatat gatacaacca
     1561 ccgctgttag aaccggtctt ggtctgtcat cggccagagg agaaatgtca ctaatagttg
     1621 gaaaaggtgg tcaagatgtt ggtgctgtct cctcatatat tcttccaatc cttggagttg
     1681 ttacaattgt cacaaccttt gtaaccccat atatattgaa actaggaaca aagttgaata
     1741 tttcatctaa tacagcagaa gagaagaaat aattagatcc agtttaatat gtaaatccca
     1801 tcgttcctgc tctaaggact aaatagaatt atgaatcacg attgatttaa aactccgcta
     1861 atcctaacgg tatgttcatt tggagggata aaaatattag tagtaattgt cttaccattc
     1921 ttactaatct gagcatctgt cactcctaaa ttatccagaa aaattgttat gacttgattg
     1981 gcatctaatt gtggtatctt gagagtaacg gatcctcccg atggattata atgatcagca
     2041 ttgaatgata tgctgtcagt tgaattatca tagttgaaat tacttattct tgcaacactt
     2101 tccaatccat aaggtagaaa ctttccgtta cctaaatcaa gagtgttaat tggcgtatct
     2161 ggatcaaaac ctgcacaact aaagtagttt gccttcttta ctatagtatt atcaggtctg
     2221 gcagaaaatg gctttacctc acctggcttt agtattggta taatgttaga atgaatagaa
     2281 tcgatttgtg ttccattctt gtcatgaact gatgcataca cactaatatt ttggaccaca
     2341 acacttccat tattctttag tgtcccaaca agctctctat tttcgcccac aggaaaatta
     2401 gaatagtttt gcaaaatgat attataataa ggatcagttg tactttctgt ctggagtaca
     2461 tatggttttc ctattacatc ataatcctca tttatcttaa atttaaatgg agattccttt
     2521 ccaggataaa taattttact gaatgtgtta tcttgtaagg tagtttttga attgtcaatt
     2581 tttttctgaa catctaagcc cactattaca tgttcagatg ttgttccaag atttgtcaca
     2641 acacctatga tgttcaattt tcccttcgaa tcaacaaaag gggatccaga agaaatttca
     2701 attttctctt ctgcgttgac aaaattagag aatattagtc ctacatacat aattagcagc
     2761 aatgtgatca gaatcggctt gatttgattc acagtgttat atttctaaaa ggaaaataaa
     2821 tatcattatg taacagagca gcaaatcaca ttttgtggga taaaacttga tttctattat
     2881 gctatcttgt caaatggctt cattgcattt ggaatacttt caatcaaatc cgtggccata
     2941 atgtgcaatc cgaccttttc tgtggcgatt gtggctgcta ctccattgaa ataaactgct
     3001 aatgcagacg catcgaagga tgaatttgtc cttgaatata tggctgcaac aagccctgct
     3061 agaacatcgc cagttcctcc gacgttcata gctggactag gccttctaat tgctgcaacc
     3121 tttcctctcg catcggctat aacattcaac caccccttca gaataatggc aatcttgtgt
     3181 tttatcgcca ttttcgaaac tattgaaata atttcttttt caccatatcc cacatcttca
     3241 ttaaaaattc ttttaaattc tccaggatgt ggggttatta tggtatcagt ttctgtaatc
     3301 tctgaaagaa cttgaggtac tagtgctgat gcatcaagaa caagttttgt cccattctct
     3361 cgaagtttct tgacgagtga atttagagcc tcagttttgg atatggccat tcccatacca
     3421 acggctgcag tgtgaggcgt ctttggcaga cttttaatca gccgatttgc agatccaact
     3481 gtgagcgaac tatccatcat aggtaatgca ataacattgg gcgagtacga tcttatggcg
     3541 ttaacaatta ttttaggtac agcagtatag accaagtcgg cgcccgcacg taaagcactc
     3601 agtgatgcaa gcagcggtgc accatgatac aaactgctac ctccaactac aagtactatt
     3661 ccattgtctc ccttctttga attttgatcc ctgggagtta catgattttt gataaaatct
     3721 tgggttatag aaagtacttc cgtcaatttc tatcatgata tgtttgatac gcctttgtca
     3781 aaaaccttcc taaaaaaaca cgaatcaatt aattggatca cttctcatca cttctcatct
     3841 acaagcctaa aattaccata tatggactga catcaattaa caaaatgagc aagatgaaaa
     3901 tttacttgtc tattcttcga gctgaaacat ggtgttgtta gccaagacac tttcgcaatt
     3961 attccacaaa ttggaacctt ctttttgttt tcttctggag ggatccaaca atagggatgt
     4021 tgtatccgca ttgtctgcag caatttcttt catccaaatt ccatccctca atattaaatc
     4081 catatctttg aatcgccaga taaccgcatt caggacaata tgtgttttcc aacttatgcc
     4141 ctggcacatt gcctaagtaa acatacttta atccaacttt ttttgctatt tcgcaatgtt
     4201 tttctaatgt taaaacaggt gtagaatcaa actccatcat tttgtagtca ggatgaaatc
     4261 tcaaaaaatg tatcggaatg tctggaccaa gttcatcgta tacaaatctg caaagttgtt
     4321 ttgcagaatc caagttgtca ccaacttggg gaacaatcag atccgttatc tctatgtgaa
     4381 ttttagtttt tgattttatt tcctttagtg ttgaaaagat tggttcagaa ctgggaatac
     4441 caatataacg tcttacgaat tcttgattcc cactaccttt aaaatcaact gtaatacaat
     4501 ccaaaaattt tgacatcatg ttaacagatt ctggtgtgtc atacccatta gatacaaaaa
     4561 tattgaatat tccttccttg tgtgcttcta ttccgcagtc ttttgcaaat tccataaaaa
     4621 ttgacggttc attataagta tatgcgatac cctgtgcacc ataagattgt gctttcgcta
     4681 ctacctgtga cggtgtcatt tcactacctt ctatttttct cctctgtgaa atatcatagt
     4741 tttgacagta tttacatagc caattgcaac ctgttgtagc aatagaataa atcgacgaac
     4801 caggcatata atgaattact ggcttttttt caattggatc aatctgccct gcaattacct
     4861 ttccatatac atacaaccat agtttgttat tattaacacc tcgaattcca cagagaccaa
     4921 tttttccctc tgggatctca catttcctgg cgcatgcagt acatcgaatt ctgccatttg
     4981 gaagattaca gaataattct gcctctttac caaatatttc tacagacgcc attattatga
     5041 tatagcccta agaaccttat aaatcagact agatcctcca caaaatatga aataatcgag
     5101 cgtgcaacat gaaccaattg tatatcttgt cttatttttt ttttgatatt catggtcaaa
     5161 attcaaattg tttcctatta actacactag ggtccaagca attaagacta caggtgatat
     5221 taacataagt tttatatgaa gaaaattatc caaacttcta tcgctccgat ggtgtaggcc
     5281 ggttaagcat ttcgccctct caaggcgacg atcccgggtt caaatcccgg tcggagcact
     5341 aatactacaa gattctgcag tccggtaaaa tctcttcatc tacacttgat tttattcaag
     5401 agttataggg ggactaccac tgtcatcatt atcttgtagt cagaaagtat tgatttagga
     5461 aaaatattat ccttgcttgt acatcagaaa tacgacatca atagccctga caatgacttt
     5521 gaatcatctg tttttttctg acaataattg aatgaccttc cctaatatga taatagtaat
     5581 ggagcttgga taattcatca atgctggcct cggagaaata gtcttcatta tatctagcca
     5641 aaattatctt gcaatcttga caatagatct ctttgaaggg cactctctgc atctaacatt
     5701 ttccggacat gtttattaac tattttcttt cctgtagggt caagtttgtc tcctgcttct
     5761 tgttctcatt aaatttcata ttcgtgagct tataatagat aacttcacca cgtctttcaa
     5821 ctacagcggc aatggcgttt tttcccattg tttcaatttc acggacattt cttgaaagtt
     5881 ctccgacctt tacatttatt ccctcattaa tgcaaaacac tacgaatttt gcacgtttct
     5941 tttcatatcc tcctctctcg taaactctga aatctgcacc aaatccaaat ccttccttta
     6001 cgacatatcc tctacttctc aagtctctat aaactagaaa tttagtaact atttccttat
     6061 catgttttaa tgtctgtttt agtaaactgc caaagttatc catactgcca ttcgtaatca
     6121 ccagtttctt gaggtaaagt aggtaaagtg cttcataagt ttcaagaaaa taatcgttgt
     6181 tttctttatc gccatatcct ttgttccgaa gctgatcttg agatcttgta tctataattt
     6241 ttatcgagca tttcttgtcc ataaatcctt caatgatatt ttggaattca ctgttttgat
     6301 ctgcctctga agacataacg attaaatcac tctgaaagag ggatttaagt attaaaacaa
     6361 gggatatggt ttgaaaggtg tcaattatcg tgaaacaaag ggaatgccgt atgtgaggag
     6421 agaatatatt tctggaaaac ctcaattaaa aattgcaagg ttttcatcag gtcaatctaa
     6481 agaaaattat gattttaaac ttgaattaat tgttagcgaa aaaatgcaaa ttaggcacaa
     6541 cgcattggaa gctgcgaggc ttgctgcaaa taaggcaatg gctcaagccg gtgacttgag
     6601 tttcttctcc cgactaactg tttatcctca tttagttcta cgtgaaaata agatgattgc
     6661 aactgccgga gcagatagat tacaggaagg catgagaaga gcatttggca aggccacagg
     6721 tcttgctgca agggtaaagc cagaacaatc gatatttgaa gcatatgttt cgaaggaaaa
     6781 tctagaactt gctaaacgcg gctttaaggt tgcatcaagt aaattaggat gcccgacgag
     6841 tgtcagagta actgaattag gcaataaatc taaagagaat aactagcatt caaacttgta
     6901 caataccatt gaatgaacga atgtgtaaat tgtgaagact acgaataact ttagagttcc
     6961 tgattttggt aaaagttttg atgtgaaatc gcatatgacc aagtaataaa acaataacaa
     7021 tacaacgaac aaatagaata cataaaattt gttacccaaa aagtttcatt ttatatcacg
     7081 cgctacatca ggattgatgc aacagcatac ctactttttc atgaggattg aacaaattta
     7141 ctgtcctatg attactcgga aaaagatact cctagttatt ctcaaaatag aaactttatt
     7201 gcatatctgc acctgagtag agaaaggcaa ttatatcctt tatgacaaga agtaatatgg
     7261 ctagtatgaa gaaa
//
LOCUS       DASPFX010000332         2751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_904370, whole genome shotgun sequence.
ACCESSION   DASPFX010000332 DASPFX010000000
VERSION     DASPFX010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_904370"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..143)
                     /locus_tag="VD694_07205"
     CDS             complement(<1..143)
                     /locus_tag="VD694_07205"
                     /inference="COORDINATES: protein motif:HMM:NF014419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12529.1"
                     /translation="MSQNTLSLKVLEAYTRDVGRGVARIDYDSMDSLTASTGDVIEIR
                     GKR"
     gene            408..1139
                     /locus_tag="VD694_07210"
     CDS             408..1139
                     /locus_tag="VD694_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HXW12530.1"
                     /translation="MGKRTLVRRRGRGGKQFQSIKRGKIVPAKYPNLQSSEQKVGSII
                     DIIHERGRDAPLAKVEFDKEISYMPAPDGLEVGEKIQIGDNVDFKPNNILPLESIPDG
                     TLICNLERNIGDGGKLVKSAGSSALVFSHTSQGVSIKLPSGKFTTLDARCKAMIGVVS
                     GAGRKEKPFLKAGNKQKYMTAHGKLYPKVRGIAQAAVYHPHGGGRHQHVGRQSSVGRN
                     TPPGRKVGNIAPRKTGRARVKVKKE"
     gene            1204..1863
                     /gene="nth"
                     /locus_tag="VD694_07215"
     CDS             1204..1863
                     /gene="nth"
                     /locus_tag="VD694_07215"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HXW12531.1"
                     /translation="MTLKFGKIISLMQSTLLNNNLVRATALKNLQTQEDGDPFKILIG
                     TILSARTRYETTTSVIKMLFSRFKNPDELSRANLKEIKELIQKIGFYNVKAIRIKEVS
                     KILVDKYNSKVPSNMEDLLTFPGVGRKTANCVLVYGFRKPAIPVDVHVHRISNRIGIV
                     DTKKPEETEIVLQKSIDMKYWTAINETFVVFGQNICLPIKPKCGLCRLTKICKYYENN
                     N"
     gene            complement(1860..2555)
                     /locus_tag="VD694_07220"
     CDS             complement(1860..2555)
                     /locus_tag="VD694_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12532.1"
                     /translation="MLETLKLGLIIAVFLILYPTLTINAQSIVHDVIKSKNSERFVVD
                     YDASNTFRRQPVVYQFSQPIPTNWQFTIQNNLSYLDSSDAKTIVKIQEPAPSEKFIEL
                     AMFSEKSGKFWVAINTNESGYIRVYERDEDGWSRDQPIFVAHANNQGLTITNGKRIIV
                     DKLSVNDFIVGSVSIYGKDELTSLDNSNSGTISFDILFGNPADSPLYYVPLIVIIAMG
                     SIILVLLIRKKRD"
     gene            complement(2558..>2751)
                     /locus_tag="VD694_07225"
     CDS             complement(2558..>2751)
                     /locus_tag="VD694_07225"
                     /inference="COORDINATES: protein motif:HMM:NF013875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HXW12533.1"
                     /translation="YFCKKCMSYANEKTCPHGVDSKEELSGSMIRKMVNSGKTPEKHL
                     MRPEISDLILRSQRPFVVD"
BASE COUNT          923 a          486 c          507 g          835 t
ORIGIN      
        1 cttctttttc ctcggatttc tataacgtcg cctgtagatg cagtcaaaga gtccattgaa
       61 tcataatcaa ttctagccac tccacgacct acgtctcgag tatatgcttc gagaaccttc
      121 agcgagagag tgttttgact cacgatatca agtactatcg tacctatctt tatacctttg
      181 tcgaggatta ctattcaaga atctactcta gtaaaacatc agaaaaaata atgcattcta
      241 gtattattcg ttctattatt gtatcaattg aaaatttatt ttactagatg accccagagt
      301 acaaagaatg aattgaaaac cggttcgtct ttaacttccc taattgcgac ctaactcata
      361 ccaaaagatt caaatcttga tgatattcct attttgaatg gactgttttg ggtaaaagaa
      421 cattagtacg tcgaagggga agaggaggca aacagtttca gtccataaaa agaggaaaaa
      481 ttgtgcctgc taaatatccg aatttacaat catcagaaca aaaagttggt tctataatag
      541 acatcattca tgaaagaggg agagacgcac cattggccaa agttgaattt gataaagaaa
      601 ttagctatat gccggcccct gatggtttgg aagtcggaga gaaaattcag attggagaca
      661 acgttgattt caaaccaaac aatattttac cattagaatc cattcctgat ggaactctta
      721 tttgtaatct agaaaggaac attggagatg gcggaaaact tgttaaatct gctggttcat
      781 cggctcttgt attttctcat acttctcaag gtgtatcgat aaaattacct tcagggaaat
      841 ttacaacatt ggacgcaaga tgcaaggcaa tgattggagt tgtttctggc gcggggagaa
      901 aagaaaagcc attcctcaaa gctggaaaca agcaaaaata catgactgct catggcaaat
      961 tatatccaaa ggtcagaggt atagcacaag ctgctgttta tcatccacac ggcggtggaa
     1021 ggcatcaaca tgtaggtcgt caatcttctg taggaagaaa tactcctccg ggtaggaaag
     1081 taggtaatat cgcaccacga aaaactggga gagccagagt aaaagtaaag aaggaataat
     1141 catttctttc caaaaacttt tttgtaacgt tattcatatt ctgaatacta tttagctagg
     1201 aatatgactt tgaaattcgg aaaaataatt tctttaatgc aaagtacgct tctcaataac
     1261 aatcttgtca gagccacagc attgaaaaac ttgcagactc aggaagatgg agaccccttc
     1321 aaaattttga taggaactat attgtcggcg cgtaccaggt atgaaactac gactagtgta
     1381 attaaaatgc tcttttctag attcaagaat cccgatgaat tatcgagagc aaatttgaag
     1441 gaaataaagg aattaattca gaaaataggc ttctataacg taaaggcaat tagaataaag
     1501 gaggtttcaa aaatactagt tgacaaatat aatagcaagg taccatcaaa tatggaagat
     1561 ctcctaacct tcccaggcgt aggaagaaaa actgcaaatt gtgtactggt atatgggttc
     1621 agaaaaccag cgattccagt ggacgttcat gtccatagga tttccaatag aattgggatc
     1681 gttgatacca aaaaaccaga agagacagag attgtccttc aaaaatcgat agatatgaaa
     1741 tattggactg ccataaatga aacctttgtt gtttttggtc aaaatatctg tttgccgatt
     1801 aaaccaaaat gtggcctatg tcgcttaaca aaaatatgca aatattacga aaataacaac
     1861 tagtcgcgtt tttttctgat aagcaagaca agtattattg atcccatagc aatgataact
     1921 atcaatggca cataatacaa tggggaatcc gcaggattac caaataagat atcaaatgaa
     1981 attgtaccac tgttagaatt gtccagactt gttaattcat ctttaccata tattgataca
     2041 gatccaacaa taaaatcatt taccgatagt ttgtcaacta ttattctctt cccatttgtt
     2101 atggttagac cttgattgtt tgcatgtgct acaaagatgg gctgatccct agaccatcca
     2161 tcttcatctc gctcatatac tctaatatat cctgattcgt ttgtatttat cgcaacccag
     2221 aattttccac ttttttcact aaacattgca agttcaataa atttctcgct tggagcaggt
     2281 tcttgaatct ttacaatggt ttttgcatca gagctgtcta aatatgacag gttgttttga
     2341 atcgtgaatt gccagtttgt tggtataggt tgtgaaaatt gataaactac aggttgtctt
     2401 cgaaaggtat tagatgcatc ataatcaaca acaaatcttt ctgaattctt agatttgatt
     2461 acatcgtgaa caatgctttg agcgttgatt gtaagcgtgg ggtataatat caaaaataca
     2521 gcaataatta gtccgagttt cagtgtttca agcaagacta atcaactaca aatggtcttt
     2581 gtgatctgag aattaaatca gaaatttctg gacgcattag atgcttttct ggtgttttac
     2641 ctgaatttac catttttcga atcatggatc cgctcaattc ttcttttgaa tctactccat
     2701 gcggacaagt cttttcgtta gcgtaggaca tacacttctt gcaaaaataa a
//
LOCUS       DASPFX010000333         2450 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1507336, whole genome shotgun sequence.
ACCESSION   DASPFX010000333 DASPFX010000000
VERSION     DASPFX010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1507336"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            168..1013
                     /locus_tag="VD694_07230"
     CDS             168..1013
                     /locus_tag="VD694_07230"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12534.1"
                     /translation="MIDPLTFVLISIPTMILLGFRHALDADHITAIDNLVRLHNVGRN
                     SKWVGAGFSIGHMISVLAEMILIIYVVGSITNVEQLSFFGGIIGGIALGVIGAVNIYA
                     MKKWGKTGSAILASKVLSKLGIIKPFNSALITGMVFGLGFDTATQISAITLSAIASAS
                     LEVQVALVLAGFFAVGMIPIDTIDSFLLRSAFSRIFGKRGFTYLSYSLSAAALAVGAI
                     ASYEAITNLEILPDITGPVLAITIIIASFGYAYASNRRRILKSDPSSASQIKEHRNEK
                     EDKYE"
     gene            complement(1176..1583)
                     /locus_tag="VD694_07235"
     CDS             complement(1176..1583)
                     /locus_tag="VD694_07235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12535.1"
                     /translation="MMNKKLLLGTNSKILTFFSVSLLAVLVLSLASGMYVHALNYDFK
                     KKLPGDNHGDNTPSEKNCEKSDTLEEFSNKVDAEKCEIDNIKDYKDWNFYKLEDPDTK
                     ACLNFFDDLGGSLVDYEVVYCYAYPEKYDEKAN"
     gene            complement(2023..>2450)
                     /locus_tag="VD694_07240"
     CDS             complement(2023..>2450)
                     /locus_tag="VD694_07240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12536.1"
                     /translation="GTSYVNGQTPAQNSSSAENETSSVNSALQTDNFDPFKSRTSSNT
                     INDNNPSQTASDTSASTDNDDASVTNDANNNNDDSDSTSDDASVTNDDSANNNNNNDD
                     SANNNNNNDDGDNDGSDDDSSSGEDKKSKDDRKFELPFP"
BASE COUNT          739 a          427 c          436 g          848 t
ORIGIN      
        1 ctaggaatag gatcttttgc agatagttat gctttttctt tattgatgat tctccgtaat
       61 ttcccgaaaa tcaaatttcg ataaagaagg tttctgacac taccttctga aactactaga
      121 ggattaaaaa atataagcat catactttga tacttaaagg tcttaagttg atcgatccac
      181 taacatttgt cttaatttcg attcctacaa tgattttatt gggcttccgt catgcgctcg
      241 atgcagatca tatcacggca atagataact tggtgagatt gcataatgtt ggaagaaatt
      301 cgaagtgggt tggagccgga tttagtattg gtcatatgat atcagttctt gccgaaatga
      361 tactcatcat ttacgttgta ggcagtataa caaatgttga acaactatca ttttttggtg
      421 gaataatagg cggtatcgcg ttaggtgtaa tcggtgctgt aaacatttat gcaatgaaaa
      481 aatgggggaa aaccggttcg gctatccttg caagcaaagt attgtccaaa ctgggaatta
      541 taaaaccgtt taattctgcg ctcattaccg gcatggtttt tggtctagga tttgacactg
      601 ctactcagat atcagcaatt accttatcag ccatagcatc agcatctctt gaagttcaag
      661 tggccctggt tcttgcggga ttcttcgctg taggtatgat cccaatagat accatagaca
      721 gttttttact gagatccgct ttttctagaa tttttggaaa gagaggcttt acatatttgt
      781 cctattcatt gagtgcagcc gcgttagccg ttggggctat tgcttcgtat gaagcaataa
      841 ccaacctaga aatattgccc gatataacag gtcccgtatt agccataaca ataattattg
      901 catctttcgg ttatgcgtat gcttcgaata gaagacgcat tttaaagtcc gaccctagct
      961 cagcttctca aataaaggaa catcggaatg agaaagagga taaatatgaa taaaaagaca
     1021 tatggaacat ttgttactaa ttaaagatac ccttacaaaa atactatctt tacctaaatg
     1081 atttccctct gaaggtaaag gtaatacgac ctcaacttaa gtaaaagcgc aatggcattt
     1141 ccctcataga taatgccaat cacaatggtt ttcagctagt tggccttttc atcatatttt
     1201 tcaggataag cataacagta gactacttca taatctacta aagagcctcc caagtcatca
     1261 aagaagttca agcatgcttt agtatctgga tcttctagtt tatagaaatt ccaatccttg
     1321 tagtctttga tattgtcgat ttcacatttt tcggcgtcta ctttgttaga aaattcttct
     1381 aatgtgtctg atttctcaca atttttttcc gatggagtat tgtctccatg attatctccg
     1441 ggtaatttct tcttaaaatc gtaattaagt gcgtgcacat acataccaga agcaagtgac
     1501 aggacaagta ctgccaacaa tgaaacgctg aaaaacgtga gtatttttga gtttgttcct
     1561 aacaaaagtt tcttgttcat cattcagtct tagtgtattt taacactata aattaatttc
     1621 ctttttgatg gctgatgttc cacatcctgt tgaagaaaaa ataccgctcg tcaaacaaat
     1681 tcaatataca agttttatcg gatcttataa aatttggcaa ttttcttaat atttaatata
     1741 aattttacaa tatctttatt ggattggatc aaatgattcc ttgagataat aaattagctt
     1801 cgtaattagt catttaagta aattctcgct aaataattat tattcttaat gttagtaaca
     1861 attttggaaa tgattgttca ccgatattct ggataacata attctaacct agattgaaat
     1921 tttcaaatat gctaatattc gaatctatgt tccgatccat aggacagaaa ataaatcatt
     1981 gttcaatttg aaaaaacgag cagctagtag ctagttcaat atttacggaa atggcaattc
     2041 aaattttcta tcatctttag attttttatc ttcaccagaa gaactgtcat cgtctgatcc
     2101 atcattgtca ccgtcatcat tgttgttatt gttattggca gaatcatcat tgttgttatt
     2161 gttattggca gaatcatcgt ttgtgaccga tgcatcatca ctagtactgt cagaatcatc
     2221 attgttgtta ttggcatcgt ttgtgaccga tgcatcatca ttatcagtac tggcagatgt
     2281 gtcagaagca gtttgtgatg gattattatc gttgatagta ttagatgagg ttctgctttt
     2341 aaacgggtcg aaattgtccg tttgcaatgc tgaatttaca ctacttgttt cattctctgc
     2401 agaactacta ttttgggcgg gagtttgacc attcacgtat gatgtcccat
//
LOCUS       DASPFX010000334         3291 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1531595, whole genome shotgun sequence.
ACCESSION   DASPFX010000334 DASPFX010000000
VERSION     DASPFX010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1531595"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..433
                     /locus_tag="VD694_07245"
     CDS             <1..433
                     /locus_tag="VD694_07245"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12537.1"
                     /translation="MSIEETLQIMNRNNDKMILVVDTQGILEGVVYKQKLFEFPEEYR
                     KSVNLESIMIKDPLFVYNTDSLHNALVRLSSNDLQEMPVLSNEDNKVIGKITISDLVR
                     LYDKEVQKITKVMNPSNINFKINDTSNKDQIKNNSTHSDQS"
     gene            complement(497..1612)
                     /locus_tag="VD694_07250"
     CDS             complement(497..1612)
                     /locus_tag="VD694_07250"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HXW12538.1"
                     /translation="MEFVETIDEGDLIDGTSKLISVKGKDIALFRIDNKITALGNSCL
                     HKGGPLTKGKIEKKYDGYYVTCPWHGWEYNISNGKAPPGYDEQQTVYDVKIEKGKIFV
                     SNQPIVYSANKKYDGSLNDLIKMEYQTTPDSLNVLGISTTNMNHNLERDSTSEMSLHK
                     ALSYARQKYNASTVLLKLRDLEFRNCEGYYSINEQACTWPCSISEMDENDGMNEVYRK
                     MILWSDIVIISTPIRWGSASSLYYKMIERLNCVQNQTTLHDRVLVKNKVASFIITGGQ
                     DNIQHVAGNMMVFFTELGFSLPPFAFMGWSRGWNAEDMENNVIQFSKSQYVARSVRDL
                     VDNGIKLLRQVKGDPCKTISSPQPKIMESPSKSINGQ"
     gene            1807..2412
                     /locus_tag="VD694_07255"
     CDS             1807..2412
                     /locus_tag="VD694_07255"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HXW12539.1"
                     /translation="MFTGIVEGTGIVKSISKIKTPNRVADNRIEIDLGKLRRGLRVGD
                     SVSVNGTCLTATSILKNTAFFEVVKETTTRTSLGFLKAGDRVNLERSLRINDRIEGHI
                     VLGHVDGVGKIENIVKIPSETKMWISVNKQTASLLVPKGSVAVDGISFTIVDVTNEAF
                     SVALVPHTLAVTTFKSKKKGDKVNIEVDILSKYVAKLLPRS"
     gene            2466..3137
                     /gene="ribB"
                     /locus_tag="VD694_07260"
     CDS             2466..3137
                     /gene="ribB"
                     /locus_tag="VD694_07260"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HXW12540.1"
                     /translation="MLAIQEAVRALRVGKFVLIHDSESRENEVDMVKAAQHVCSSDIA
                     TMRNDAGGLICLAIPHEIASKLNLIFMHDLLHIASKNNPSLSKMISSIAPYGDRPSFS
                     ITINHIDTFTGITDKDRALTITAMSDVCSKIDNEGKLEFFKKFRSPGHVHLLIGAMEL
                     LKERSGHTELAIRLIEHANLIPAVVICEMLDSETGGALSVDKATEYSKKFNIPLVESL
                     QIKNI"
BASE COUNT         1077 a          579 c          598 g         1037 t
ORIGIN      
        1 catgtctatc gaagaaacac ttcaaataat gaatcgaaat aatgataaga tgatcctagt
       61 tgttgatacc caaggtattc ttgaaggcgt tgtttacaaa caaaagctct ttgaatttcc
      121 cgaagaatat cgtaagtctg tcaatttgga aagcatcatg ataaaggatc ccttatttgt
      181 atataacaca gattctcttc ataatgcact agttagatta tcctcaaacg atcttcaaga
      241 aatgcctgta ttatcaaatg aagataacaa ggttattgga aaaattacaa tatcagactt
      301 agtaaggcta tatgataagg aggttcaaaa gataactaaa gtcatgaatc cttctaatat
      361 caatttcaaa attaatgata ccagtaacaa agatcaaata aaaaataact caacgcattc
      421 agatcaatca tgatgtgact tcttttcagg aaatagtata aaatagatct tgaaaaatga
      481 acacgattgc aattcttcat tgaccattta ttgattttga tggcgattcc atgatctttg
      541 gttgtggaga agaaattgtt ttgcatggat caccttttac ttgacgaagt aattttatgc
      601 cattgtccac aagatctctg actgatctgg ctacatattg cgattttgag aattggatga
      661 cattattttc catatcttct gcgttccaac ccctgctcca ccccataaat gcgaaaggcg
      721 gcaaagaaaa tcctagctcg gtgaaaaaaa ccatcatgtt gcctgcgaca tgttgtatat
      781 tgtcctgtcc tccggtaatg ataaatgatg caaccttatt tttgacaagt actcgatcat
      841 gcagggtggt ttgattctga acacaattaa gacgttcaat catcttgtag tacaatgaag
      901 atgcacttcc ccatctaatc ggagttgaaa ttattacaat atcagaccat agtatcatct
      961 ttctataaac ttcgttcatg ccatcatttt catccatttc tgaaattgaa catggccacg
     1021 tacatgcttg ttcattgata ctgtaatacc cctcacaatt tctgaattca aggtctctca
     1081 gctttagtaa taccgtagag gcattgtatt tttgccttgc atatgatagg gccttatgca
     1141 atgacatttc agatgtagaa tctctttcta aattgtgatt catatttgtg gtagatatgc
     1201 ccaggacatt caaggaatct ggtgtagttt gatattccat ttttatgaga tcgtttaatg
     1261 atccatcata tttcttattt gcagagtaca caataggctg attggagaca aagatttttc
     1321 ctttttctat cttgacgtca taaacagttt gttgttcatc ataccctggt ggtgcctttc
     1381 cgttcgaaat attgtattcc cacccatgcc aaggacacgt aacataatag ccatcatatt
     1441 ttttctctat ttttcctttt gtcaatggac cacccttgtg cagacaactg ttgcccaatg
     1501 cggtaatctt gttatcgatt ctaaataatg caatgtcttt accttttacg gatatcagct
     1561 tgcttgtgcc atcgatgaga tctccttcat ctattgtctc tacaaattcc atactaatta
     1621 ttattctttc aagttaatat agtatatctg gtatccaatc aagtgcagat tttgaaattc
     1681 agttgctatt cgtgagcaat tgacaatatg caatataatt tctcttttta tcctgcaaat
     1741 ggactagttt gcgatgactt tagatgatat atttttatta cgatcggaat tgttattcaa
     1801 ttctgaatgt tcactggtat cgtcgaaggt actggaatcg tcaaatcaat atcaaaaata
     1861 aagaccccaa atagggtggc agataataga attgagattg acttgggaaa actaagaagg
     1921 ggactgcggg ttggcgacag cgtaagtgtc aatggaacct gtcttactgc cacaagtatc
     1981 ttgaaaaata cagcattctt tgaagtagta aaagaaacta caacaaggac ttccttagga
     2041 tttctgaaag caggcgaccg ggtcaatttg gagagaagtt taagaattaa tgacaggatc
     2101 gaaggtcaca ttgttttggg tcatgttgat ggagtcggaa agattgagaa tattgttaaa
     2161 atcccttcgg aaactaagat gtggataagc gtgaataaac aaactgcaag tctattggta
     2221 cctaaaggat ccgttgcagt ggatggcata agctttacaa tcgtagacgt aactaatgag
     2281 gcattttctg tagcactggt gccacacaca ttagccgtta ctacgtttaa gagtaaaaag
     2341 aaaggagata aagttaatat tgaggtggac attttaagca aatatgttgc aaagctatta
     2401 ccacgatctt agtaattaca acaaaatcag taaactttat aatcatattt agagtcttga
     2461 actctgtgtt ggcaattcaa gaagcagtga gagcattaag agttgggaaa tttgtcttga
     2521 tacatgatag tgagtccaga gaaaatgaag tcgacatggt aaaagctgct caacatgttt
     2581 gttcctctga tatagcaaca atgagaaatg atgcaggcgg ccttatctgc cttgccatac
     2641 cccatgaaat tgcttcgaaa ttgaatttga tatttatgca tgatttgttg cacattgctt
     2701 ccaaaaataa tccttcgtta tcaaaaatga ttagttcgat agctccatat ggagaccgac
     2761 cttcattttc aattaccata aaccatattg atacttttac tggcataacc gataaagaca
     2821 gggcgctcac aatcactgcc atgtcagacg tatgttctaa aattgacaac gaaggaaaac
     2881 tcgaattttt caagaaattt cgttcacctg gccatgtaca cctattaata ggtgcaatgg
     2941 agctactaaa agaaagatca ggtcacacag aactagctat tagattaatt gaacatgcga
     3001 atctaattcc agcagtagta atttgcgaaa tgctcgattc tgaaacaggt ggggccttgt
     3061 cggtggacaa agctacagaa tattctaaaa aatttaatat ccccttagtg gaatcattgc
     3121 aaatcaagaa tatttaggtg cgttgaaagt aagttgaaaa aaataagagt agcaatagtc
     3181 gttgcagaat tcaataaaga tatcactgat aaaatgcttc tttcagccaa acatcatgca
     3241 aaaaatttaa aaatgcaaat taaaaatgtc tgccatgtac caggaacatt t
//
LOCUS       DASPFX010000335         2242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1938440, whole genome shotgun sequence.
ACCESSION   DASPFX010000335 DASPFX010000000
VERSION     DASPFX010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1938440"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..1134)
                     /gene="gap"
                     /locus_tag="VD694_07265"
     CDS             complement(85..1134)
                     /gene="gap"
                     /locus_tag="VD694_07265"
                     /inference="COORDINATES: protein motif:HMM:TIGR01534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HXW12541.1"
                     /translation="MSEKLRLAINGFGRIGRCFLRSAIKDKEFMEMVDIVAINDMADA
                     KTLVHLFKYDSVFGRFDGNVTVKNEDSLSVDGLDIKVMSEIEPSRLPWKDMKVDLVLE
                     SSGKFNDAKEAEKHITVAGAKRVIISAPSKGPDTTIVLGVNEDEFDNKKHNIISMASC
                     TTNCLAPVVKVINDRFGIEKGYMTTTHAFTNDQRLLDLPHKDLRRARSATMSIIPTTT
                     GAAKAIGTIIPELKGKIDGMALRVPVSSGSITDMVFTLKKEVTREEINNALKQAAEAK
                     LKGVLEYTEEPIVSADIIGNPHSSIVDGLSTMVLGDKNNVVKILSWYDNEWGFACRLV
                     SLVKFIAKQDKTNEP"
     gene            1419..>2242
                     /locus_tag="VD694_07270"
     CDS             1419..>2242
                     /locus_tag="VD694_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HXW12542.1"
                     /translation="MDFPELVKKRSDHLLGGGAIKKQERKKKGKLTALERIELICDSK
                     SFTEIDPFVTHECHNFEMQDRKFLGDGVVTGFGMIDDRLAYFFSHDFTVLGGSLGLAF
                     ASKVCKVMDLALKQGVPIIGINDSGGARIQEGVDSLAGYAEIFYRNVKASGVIPQISL
                     IMGPCAGGAVYSPALTDFVIMIKSAYMFVTGPEVVKEVTEENVTFEDLGGAEIHNKKS
                     GVAHFIADNEQECFGILKNLLSFFPSNNLENPPCVVTKDDPERKDESLNSFLPSSP"
BASE COUNT          640 a          478 c          404 g          720 t
ORIGIN      
        1 ccttagggtt caaaatctca ttcatatcgc gagtctctac acacatccat caattctaga
       61 gtagaatacg attcatttat cctgttacgg ttcattcgtt ttatcctgtt tcgcaatgaa
      121 cttaaccaaa cttaccaacc tgcaagcaaa tccccactca ttatcgtacc atgatagtat
      181 ttttactaca ttattcttat ctcccaaaac catggtgctc aagccatcta cgatcgaaga
      241 atgaggattg cctataatat ctgctgatac aattggctct tcagtatact ctaaaacccc
      301 tttcaattta gcctcagcgg cctgcttcaa tgcattattg atctcttctc gtgttacctc
      361 tttttttaac gtaaatacca tatctgtaat agacccacta ctgacaggta cccgaagagc
      421 catcccatct atttttccct ttaactcagg aattatggta ccaattgcct tcgctgctcc
      481 tgtggtggtc gggataatgg acattgtagc agacctggcc cttctcaaat ctttgtgtgg
      541 taaatcaagt aacctttggt catttgtaaa tgcatgggta gtagtcatat aacctttttc
      601 gataccaaac cgatcgttta tgactttcac cacaggggct aagcagttag tagtacatga
      661 agccatggaa atgatattat gtttcttgtt atcaaattcg tcttcattaa ctcctaacac
      721 tatcgttgta tcaggaccct ttgatggagc tgaaatgatc acccgttttg cacctgcaac
      781 agttatatgt ttctccgctt ctttagcatc attaaatttc cctgaagatt ccaaaaccaa
      841 gtcaaccttc atatctttcc atggtaatct tgagggctct atttcactca ttactttaat
      901 atctaaacca tctacactca gagaatcttc attctttact gtcacattgc catcaaatct
      961 cccgaaaaca gaatcatact tgaaaagatg aacgagggtc ttggcatcag ccatgtcgtt
     1021 aatcgctact atatcaacca tttccatgaa ttctttgtct tttatcgctg accttagaaa
     1081 acaccttcca attctgccga atccatttat agcaagcctt aatttttcac tcaaatacgt
     1141 tttacaactc ttattatggg tttatgaatg ttataaatgg atagtctcta gttttcatat
     1201 agttgcctgt aaatagatct atggttctat tcaaagtcag gtccttacca taccgaaggt
     1261 gaccagttgc taattttttc tcgaatttgc actggaggct gaagagcata atctcattga
     1321 ttggttcaga aataacctac taaaacagtt ttgatccatt tgatggccaa tagattcatt
     1381 acactttttt actcctttga ggctagctag ctttgaatat ggattttccc gagctggtaa
     1441 agaaaagaag tgatcatctc ctgggtggcg gagccattaa gaaacaagaa cgcaaaaaga
     1501 aaggaaagct cactgctctt gagaggatcg agttgatctg tgattctaaa tcctttacag
     1561 aaattgatcc tttcgtaaca catgaatgcc acaactttga gatgcaagat agaaagttcc
     1621 ttggtgatgg cgttgttaca ggtttcggaa tgattgacga tcgcttggct tacttcttct
     1681 ctcacgactt tacagtccta ggtggttctt taggtcttgc atttgcttca aaggtatgta
     1741 aggtaatgga tctggcgtta aaacaagggg tgccaataat aggaataaat gattcaggag
     1801 gggcacgtat acaagaagga gtggatagtc ttgccggcta tgctgagata ttttatagaa
     1861 acgtaaaggc ctctggagtc attccccaaa tatctctcat aatgggccct tgcgccggtg
     1921 gtgctgtcta ttcacctgcc ctgactgatt ttgttattat gattaaatct gcatatatgt
     1981 ttgtcacagg accagaagta gtgaaagagg taaccgaaga aaatgtaact tttgaagatt
     2041 tgggaggtgc agaaattcac aataaaaaaa gtggtgttgc acatttcatt gcagataacg
     2101 aacaggaatg ctttggaatt ctcaaaaacc tactgtcatt tttcccttct aataaccttg
     2161 aaaatcctcc ttgcgtggta actaaggatg atcccgaacg gaaagacgaa tcccttaact
     2221 cattcttgcc ttcgagtccc ca
//
LOCUS       DASPFX010000336         2094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1509384, whole genome shotgun sequence.
ACCESSION   DASPFX010000336 DASPFX010000000
VERSION     DASPFX010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1509384"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VD694_07275"
     CDS             complement(<1..218)
                     /locus_tag="VD694_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12543.1"
                     /translation="MEAETIVAEIGQKYNNMTAEDCTGFFAGGSERRFKKVTIWSQGI
                     DSLWFNAIVARVKELSDLTKIPIVSGGI"
     gene            1197..1898
                     /locus_tag="VD694_07280"
     CDS             1197..1898
                     /locus_tag="VD694_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12544.1"
                     /translation="MKGPEKSSFLRLMELSNKNEGIHSYLWFKKQAPFSSEDEKLLST
                     LVDGNLVEVIHGGRFRRGGRNYALTTCGLFYILSENQVFSGILLSRYCGNIILQLLLF
                     QYLEEDTVKNSSPQLEFLISDYLHRCCITSKRTIDTIRSSKISEDRERYLKILELELK
                     AFAFCLGIKLTRMYSRYIAISKGRNTKHTDQLDHEEDKMLSALVDDVRFTRFRRSVLK
                     ELDEAVEELARLKSE"
BASE COUNT          672 a          388 c          395 g          639 t
ORIGIN      
        1 attataccac ctgaaacgat aggtatcttg gtcagatcag atagctcttt aactctagcc
       61 acgattgcat tgaaccaaag gctatcaatt ccttgactcc aaatggtcac cttcttgaat
      121 cgcctctctg atccccctgc aaaaaagccg gtgcaatctt ccgcggtcat gttattgtat
      181 ttctgaccaa tctccgccac aatggtctca gcctccattg gcaggtacag gatggtcagt
      241 gtcgggaaag gaacagtatt ctgagtcgaa gaagtcccat cttccatatg acagatcttt
      301 caaagtcaca gttatatctg gatttcgaga agttgggata aatctaattt taagattcaa
      361 tcacatggta agtattggcg tcgttcccta attaataaat aatagaactg tagtctaaag
      421 tggctttaat ttttagaaac ttgattaacc gtgaaaggca tgtttaatcc aaaatgacat
      481 ctaatccatt ccgccccgaa aaaacgcttt tgtttttcca acaataatga gggaacattt
      541 ttgcagcttg tgcttgtcaa gatcaccaga gtattaaatc ggcttaaaga caatctacaa
      601 gccctaaaaa gtttcgagaa taataattgc taattagtac aaaatagtta cttctcaaat
      661 tcctatgttc ctttctgcag ctgtcttaaa acctttcctg attgttccat taagaatcga
      721 ataatctaat ttccagttca gtattatagg cataattccg atggcctatc ttgattaaaa
      781 tgaactcttg ctatgctaaa ttacattttg caaatgaaat cattaaatta actaccatcc
      841 ttaaatcttg gatatttacg cattcaccgt tgagggtgaa tctggccaag ctaaaatata
      901 ggataaatta caatccaata aattatgata ttcagttagg aatgtataac accgaatcag
      961 acaatcatat ccgatatgaa gatgcgagag caaatcagtg gagatgcgac aaatgtgacg
     1021 gcacattttc gaccttccga aagctcaaat tgcataaatc tcaaattcac gcttattaga
     1081 tatttgcata tagaggtctt aagatcacta catataacaa cgtgagttgt atacgttccg
     1141 gtaacatgag ttatgctgag tacatatccc aattgatcaa ttgtactccg gctgagttga
     1201 agggtccgga aaaatcatcg tttctaaggc tcatggagct ttctaataag aatgaaggga
     1261 tacattctta tttgtggttc aaaaagcagg caccatttag ctctgaggac gaaaagctac
     1321 tttctaccct tgtcgatggc aatctagtgg aggtgattca tggaggtaga tttagaaggg
     1381 gtggccgaaa ctacgcatta acaacgtgcg gactatttta cattctgagc gagaatcagg
     1441 ttttttctgg cattttactc tcgagatact gtggcaatat tatattgcaa ctgttgttat
     1501 ttcaatactt ggaagaggac accgtcaaaa attcgagtcc acaacttgaa ttcttaatct
     1561 ccgattactt gcatagatgc tgtattacct caaaacgtac tatagatact attagatcct
     1621 caaagatttc ggaagataga gagaggtatt tgaaaatact tgaattagaa ctcaaagcat
     1681 ttgcattttg cttaggaata aagttaacac gaatgtattc acgctacata gcgatttcta
     1741 aaggtagaaa tactaaacat actgaccaac tagaccatga agaagacaag atgttgagtg
     1801 cgctggttga tgatgttaga tttacccgat ttcgacgtag cgttctaaag gaattagatg
     1861 aagcagtgga agaactcgct aggttaaaat cagaatagct tattggtccc attatcgagt
     1921 ttattttttg actaccattt tttttgaaag tcgacactaa gtgttgttag aagcacgacc
     1981 gcctgcagac tgtccgcaac aacgataata tcataagggt tgacatttga gtagatcaca
     2041 taattatgga taattgcttg aatgaattta cgaaagtagg cttgtctaag ctaa
//
LOCUS       DASPFX010000337         2566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_255946, whole genome shotgun sequence.
ACCESSION   DASPFX010000337 DASPFX010000000
VERSION     DASPFX010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255946"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(427..>2566)
                     /gene="nrdD"
                     /locus_tag="VD694_07285"
     CDS             complement(427..>2566)
                     /gene="nrdD"
                     /locus_tag="VD694_07285"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HXW12545.1"
                     /translation="LNYLKIISGEMEIEASHDLITQTESKPTGILQAAKRVRMIFSVM
                     ASPNRIDILRILNSKGPLTYSELKSLAGFKSKKESGKFAYHLRKLLRQSLVALNKAER
                     RYTITNLGKLVLSLARQIEERSIIESGKMYVRTSRHSIEEFNSNRITQSLVREANMPL
                     EQAHKITEEVENKVYKFQTVYLTSSLIRETVNSILIEHGYEEFRSKLARLGIPGSDIS
                     DMFNNPSLSKNGVEGILSETSLAVFSENLLFNMLPKDITDMHLAGELNISNTGLWNLM
                     PDTVFIDTKNIIENGLNFKGKYLNVSRVKPVQTLEDITAVLPVLISVLSRETSREVIL
                     DNFVSTISSKIRGSAEQVELAFTRAFISSSISRSYSLAGFPVFTFPISTDSASITRPV
                     LAAYLKYLEHTPLPTIAISLVGNDKESLSANADLIGAIVKLGGILSVSKNYRSHLGVV
                     KNQSDEKSNSVVSLHSLAINLPRLAYQSNKDETYFRARLALMIKPAISALLARKNSIL
                     EMIRREMLPITANITQMMQLSRMNLVINLTGIRESVYNILGHELDGEEIIQKVLHTAV
                     EVASEQGKLSGDESIRIAMITDDSSSRLASLDSEKYGNMYDQSDDDSMIKSYSQGVLI
                     NGRDLLTNSGPIVESSNSIDKLLNGGISLNLDISDLTDVELKDCIDKAFDLNFFRPVY
                     KSMICSSCGTRTPVSSEVCQNCGSTNFAQL"
BASE COUNT          774 a          508 c          439 g          845 t
ORIGIN      
        1 atttcggtaa tttcctttgc cataacgcat tatacagcta gaccctagct taaaaatatt
       61 attttaataa ataattatac aatcaaggat tgaggtctaa actatttgat tcgatgtcat
      121 tatattatcc accattcgaa aaaacgaaaa aagttggaac cataggacgt ttattctttc
      181 aaggttagct ttttctgtcc atagattatt ttatctaaaa attcattcgt gagtaaaccg
      241 cttatgcatt taatttacgc aatttgggaa cagtggcagc ttaggagcag catccatgcc
      301 atctacatcc tccaccactt ccatagtcta tctgtttggg aagaatagag ctatggttta
      361 gctcaataga gcttcccaat gcatgcgcaa aattgattct aaattatgta ctcgatggac
      421 ttccatctaa agctgtgcaa aattagtgga cccacaattt tgacatactt cagatgacac
      481 cggggttctt gtaccacatg agctacaaat catactcttg tagaccggtc tgaagaagtt
      541 aagatcaaag gccttgtcaa tgcaatcttt caactcaaca tctgtaaggt cactaatgtc
      601 caaattaagt gaaattccac catttagtaa tttatcgata gagttacttg attctactat
      661 gggaccagaa ttcgtaagta gatctctacc atttatcaga acaccctggg agtaggactt
      721 tatcatcgaa tcgtcatcag attgatcata catgtttccg tatttttcag agtcaagaga
      781 agctaatcgt gaactactat catctgtaat catggcgatt cgaatggact catctccaga
      841 tagctttcct tgttctgaag ctacttcaac tgcggtatgc aatacttttt ggataatctc
      901 ttctccatct aattcgtgtc ctaatatatt gtacacagac tctcttattc cggtcaaatt
      961 aattacaaga ttcattctgc tcaactgcat catttgggta atattggctg ttattggaag
     1021 catttctctt cttatcattt ccaaaataga gttctttctt gcaagcaaag cagagatagc
     1081 cggtttaatc attaaagcca atctagctct gaaataagtt tcgtccttat tggattgata
     1141 ggctagtcgt gggagattga tagctaaaga gtgcaaactt acaactgaat ttgatttttc
     1201 gtcagattga ttttttacaa ctcctagatg actcctatag ttcttggata cagacaaaat
     1261 acctccaagt tttactatgg ctccaatcaa atcagcattt gcgctcagtg attctttatc
     1321 attaccaact aatgatatcg cgatggtggg taaaggcgtg tgctccaagt atttcaagta
     1381 ggctgccaat acaggtctag ttatggatgc gctatcagtt gaaataggaa atgtaaaaac
     1441 tggaaaacct gctaatgaat acgatctgga tattgatgat gaaataaatg ccctagtaaa
     1501 ggctaattct acttgttcgg cactgccccg gatcttactt gagatggtag aaacaaaatt
     1561 atcaagtatc acctcccttg aagtttccct acttaagact gaaatcagca cgggcaaaac
     1621 tgcagtgata tcttctagag tctgaacggg tttaaccctt gaaacattca agtattttcc
     1681 tttgaagttt aagccatttt caatgatatt ctttgtatca ataaacaccg tatctggcat
     1741 cagattccaa agaccagtgt tggaaatatt tagttcgccg gctaaatgca tatctgtaat
     1801 gtctttaggt aacatattga acaacaagtt ttcggaaaag acagcaagag aagtttccga
     1861 caaaataccc tctaccccat tcttgcttaa tgaggggttg ttaaacatat cagagatatc
     1921 agatcccggg attcccaacc tagctaattt tgatctaaat tcctcataac catgctctat
     1981 caaaattgaa ttcaccgtct ctcgaataag cgaggatgta agatacacag tttggaattt
     2041 gtaaaccttg ttttccacct cctcggtaat tttatgtgct tgctcaagag gcatgtttgc
     2101 ctccctgact aacgattgag ttatcctgtt tgaattaaat tcttcaatgg aatgtctaga
     2161 agttcgtaca tacatttttc cactttcaat gattgatctt tcttcgattt gtcttgctag
     2221 actaagcact aattttccaa gattggtaat ggtatacctt cgttctgctt tatttaatgc
     2281 cacaagagat tgcctcaaaa gcttccttaa atggtaagca aattttccag actctttttt
     2341 agatttaaaa ccagccaacg atttcaattc cgaataagtt aagggacctt tggaatttag
     2401 aatgcgaagt atatctattc tgttaggact tgccatcacg gagaaaatca tcctaactct
     2461 ttttgccgct tgtaaaattc cagtaggctt agattcagtt tgagttatta aatcatggct
     2521 cgcctctatc tccatctcac ccgatattat cttgagataa tttaaa
//
LOCUS       DASPFX010000338         2562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1585294, whole genome shotgun sequence.
ACCESSION   DASPFX010000338 DASPFX010000000
VERSION     DASPFX010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1585294"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..757)
                     /gene="bioD"
                     /locus_tag="VD694_07290"
     CDS             complement(<1..757)
                     /gene="bioD"
                     /locus_tag="VD694_07290"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HXW12546.1"
                     /translation="MIVNLRLFTNANSIKTLKKLKGVFITGTDTEIGKTTIACGLAWL
                     LQKNGIKVGVMKPFATSSKVYSRRYRSSDTSSLARAADITEPDEILNPIYFQLPASPL
                     MAAEILHKTVDMGMVTKMFDILKKKYDFTLVEGIGGAMVPITRKISLLDVMKGMKLPT
                     IIVSSPRLGSINHTILTINACKVKKIPIVGVIFNQMPKNPSIVESMTPNYIEKLTDTK
                     TISVIPFMVDCNFKKVGMYLGRDSAIKKITSGLT"
     gene            892..1407
                     /locus_tag="VD694_07295"
     CDS             892..1407
                     /locus_tag="VD694_07295"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HXW12547.1"
                     /translation="MDTKTGILFIACANVLLISSSQIHALDSQTNNTTSFATDADFFP
                     NYQKASIPINGYNVLMALASTDEQRIRGLSGLEKLNENQGMLFLFDKPSKQGFWMNKM
                     NFPIDIVWLDSNKKVVHIEKQLEPCKLFLACPVYNPQVDALYVIELRSGFADSHSIKN
                     EMIINFDLPVS"
     gene            1537..2514
                     /locus_tag="VD694_07300"
     CDS             1537..2514
                     /locus_tag="VD694_07300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12548.1"
                     /translation="MKVLAICNALLWQNCKICISHRNPFQVIFVVSDHQLSFGQNLSN
                     LFPSSIPTETIKIVNPTTTQNVSAGQELRMSGTSSDNIVKNCSVSVIVNNLRPYQTAI
                     AKGSDGISDYSQWEFTLRKNYSQINEGENKITAKLSCSSASPRWYSVFINGVPNNGNI
                     EALSPVKSEEEQSTLIANLSIPSNIESNNEELPIIQSDEEQNLPSSDLSLTGNANSDD
                     NALLVSIVPLNDPVSRGDTQSVTITVTDSTSRAIANAEIDGNLIYPGDNFEKEFSGIT
                     DSEGEFVYSWTIGQNGDDGPITIQVEASNQEHPPASATSSFDIVDLSDE"
BASE COUNT          808 a          452 c          450 g          852 t
ORIGIN      
        1 aagttaaccc tgatgttatt ttcttgatag ccgaatctct tccaagatac attccaacct
       61 ttttgaaatt acagtcaacc atgaaaggta tcacagatat tgtctttgta tcagtcaatt
      121 tttcaatata gttcggtgtc atagattcta cgatgcttgg gttctttggc atttgattaa
      181 atattacccc gacaataggt atcttcttta ctttacatgc gtttattgtc aagatcgtgt
      241 gattgattga gcctaatcgt gggcttgaca caataatggt tggaagtttc attcccttca
      301 taacatcaag taatgaaatt tttcttgtga ttggaaccat tgcacctcca attccttcca
      361 ctaaagtaaa atcgtatttt ttcttaagaa tatcaaacat tttggttacc attcccatgt
      421 ccacagtctt gtgtaagatt tcggctgcca ttaacggaga ggcgggtaat tgaaaataaa
      481 ttggattcaa tatttcatct ggttctgtaa tatctgcagc ccttgctaga gaagatgtat
      541 cactggatct gtatcgtctt gagtatactt ttgaagatgt ggcaaatggt ttcataactc
      601 caactttaat tccatttttc tggagcaacc aagctaaacc acatgctatt gttgtttttc
      661 caatttcagt atcagtaccg gtaataaata cgccttttag ctttttgagt gttttaatag
      721 aatttgcgtt cgtaaataag cgtaaattta ctattattta gattttttac ccatactgca
      781 aataagtgta atgcagatga cttgaatgac atagaaaagc atgtactttt gaccctgaca
      841 tttatttcaa aagtaaaact aaaattgaat tgaaccgtac cgtttcttaa tttggatacc
      901 aagacaggaa tattgttcat agcatgtgcc aatgttcttt taatatcatc gtctcaaatt
      961 catgcacttg attcgcaaac caataatact acttcttttg ctactgatgc cgatttcttt
     1021 cccaattatc aaaaagcatc cataccaatt aatggctata atgtcttaat ggcattagca
     1081 tctaccgatg aacagagaat cagaggcctt tctggattag aaaaattgaa tgaaaaccag
     1141 ggaatgcttt ttttgtttga caagccatca aagcagggtt tttggatgaa caaaatgaat
     1201 tttcctatag acattgtttg gttggattcg aataaaaaag tcgtccacat cgaaaaacaa
     1261 ttggaacctt gtaaattatt tctcgcatgt cctgtgtata atcctcaagt tgatgcatta
     1321 tacgtaatag aactacgatc tggctttgcg gattcccatt ctatcaaaaa tgaaatgata
     1381 attaatttcg atttgccagt ttcttagttc gctagatcta gtcgactggt acttatttta
     1441 tggatgatgt tcaatcaatg tgattgacga aaatattatc gacaagtctt tgaaactatt
     1501 acccattcct acttgttatt atgttttgta aataatatga aagtacttgc tatttgcaac
     1561 gctcttttgt ggcaaaattg taaaatatgt atttctcata ggaatccgtt tcaagttatt
     1621 tttgtagttt cagatcatca attatctttt ggccagaatt tatccaatct ttttccatct
     1681 tcgatcccaa ctgagacaat aaagatagtt aatccgacaa cgacgcaaaa tgtaagtgca
     1741 ggacaagaat taagaatgtc cggtacgtcg tcagataata ttgtaaaaaa ttgttcagta
     1801 tctgtgatag taaataacct tcgaccttat cagaccgcta ttgcaaaagg ttcggatggt
     1861 attagcgatt attctcaatg ggagtttaca ctacgcaaaa actattctca gattaatgaa
     1921 ggtgaaaata agataacagc aaagctatca tgttcgtcag catctccgcg atggtatagt
     1981 gtgttcataa atggagttcc taataatggt aatatcgaag cactatctcc agtaaagtct
     2041 gaagaggaac aaagcacttt aattgccaat ttgtcgattc ctagtaacat tgaaagtaac
     2101 aatgaagagt tgcctattat acaatcagat gaggagcaaa atttaccttc ctccgatctg
     2161 tctctgacgg gcaatgcaaa cagtgacgac aatgccttac ttgtttcaat tgtgccctta
     2221 aatgatccag tctcaagagg tgacacacaa agtgttacga taactgttac cgattcaacg
     2281 tcaagggcaa tagcgaatgc agaaatagat ggaaatttga tatatccagg agataacttt
     2341 gagaaggaat ttagtggaat aacagattct gaaggggaat ttgtttattc ctggaccata
     2401 ggacaaaacg gtgatgatgg accaataaca atacaggtgg aggcatctaa tcaagaacac
     2461 cctcctgcat ctgctacaag ctcctttgat attgtggatc tttctgacga gtaaaataac
     2521 acctgtgtta ctatttcaag gtaatcattc gaattactta at
//
LOCUS       DASPFX010000339         5326 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_880730, whole genome shotgun sequence.
ACCESSION   DASPFX010000339 DASPFX010000000
VERSION     DASPFX010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5326
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880730"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..688
                     /locus_tag="VD694_07305"
     CDS             89..688
                     /locus_tag="VD694_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HXW12549.1"
                     /translation="MSDTDKDRTASLSRSTSETTIKLDVNLDGEGKAQISSGLKFLDH
                     LITTFSKYSLVDIEAEIKSHDSILHHLIEDIAICLGQSLDKALGNRARIMRFGYAIVP
                     MDDSRSNSAIDLVKRQYSKFELKLERNEVEGIAKEDIEHFFRSLLQNLVACTHILVEY
                     GEDDHHKLESAIKSFAIAFRNAAAIDQRRKGLPSTKDMM"
     gene            689..1309
                     /gene="hisH"
                     /locus_tag="VD694_07310"
     CDS             689..1309
                     /gene="hisH"
                     /locus_tag="VD694_07310"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HXW12550.1"
                     /translation="MTKIAIFDFGAGNIFNLHQSLLSNGAQYVDVIRSLKELENYDGL
                     VLPGVGNFDAAIGSMQKDSALLNAAVDKGMPILGICLGLEMLFDKSEEGVLEGLKVLD
                     GNVLMLPKTKVKVPHIGWNNLRIVNNESNLLKDIPQDSWVYFVHSYHIEPQDEKLIAA
                     ITDYGSILPVVVERSNLFGTQFHPEKSGKIGAQIMKNFVNICEENE"
     gene            1306..2016
                     /gene="hisA"
                     /locus_tag="VD694_07315"
     CDS             1306..2016
                     /gene="hisA"
                     /locus_tag="VD694_07315"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HXW12551.1"
                     /translation="MKVLAAIDIMNGEVVRLTKGDQATKKVYSKDPVEVAKKWEKDGA
                     DMLHIVDLDAAFGSATNNLLIISEILQAVNIRVQIGGGIRDTDTFEMIAKMGFSRIVV
                     GTMAYRNANELRLLCKNYSDKIVISLDEINGKVMIDGWQSSSDYTVDDAINKFNKFGI
                     SNFLLTSIIKDGTLSGPDIVTLNSINTDRKSKIIASGGISNLLDVLRVRSIGCDSVIL
                     GKAIYEERLDIKKVKALA"
     gene            2016..2828
                     /gene="hisF"
                     /locus_tag="VD694_07320"
     CDS             2016..2828
                     /gene="hisF"
                     /locus_tag="VD694_07320"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HXW12552.1"
                     /translation="MPLSKRIIPCLDVDNGRVVKGIKFVGVKDAGDPVELAKKYSDQG
                     ADELVFLDITASRQDREIMKSMVRKVASVIDIPFTVGGGIKTLSDAREILLNGADKVS
                     INTASVKTPKLVTDLMNIFGRQCVVVAIDVKRNYEIDENHKEHTIIHGPDRDFYFEVM
                     IYGGSKGTGIDAVQWAKKVEELGAGEILLTSIDADGTKNGYDIELTNTICNSVRIPVI
                     ASGGCGSSDHMVEAFKKTDVDAVLAASIFHYDKLTLDKVKKYLAEKGIQTRI"
     gene            complement(2901..4364)
                     /locus_tag="VD694_07325"
     CDS             complement(2901..4364)
                     /locus_tag="VD694_07325"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HXW12553.1"
                     /translation="MNSSGHQSLQKRGGIFGNIIFDLLLIAFAVSLLISPFWFDINDI
                     IYQFNGLKDYIFRNFIPTSLYNYWLIIPLGIIGTWRWTIWLIKKIVATLYSPIIPGST
                     KDASTDVEQLTVSVIIPVYKEDKKIFRRSLESWWKNKPAEIIAIIDKSDPASIAEFKE
                     FQQGKSNLKLIVTSKPGKRAALADGIAESKGKILALTDSDTMWDSNFLENALRPFRVD
                     AKIGGVTPRYHPIETRTIWQKMTDIFWDMRNYYDMPAQTAGGKALSCLSGKTALYRRE
                     ILLPKMNFFLNEVILGRKKESGEDKCFTRLVQQEGWKTYYQSSAVIYSSAAPGFDQFI
                     RQRIRWARNSHNSDFQSLWNGWVWKCPYLAFSMIDRFISVFTLLLGPIFFSIALFENQ
                     WGLAISILILWLVGRTIKIIPHLRRNPKDFLILPVYLGINFLMALTRLYALVTIRDQH
                     IIRGIRKVNASRIKKIKDYLLTVEMIAGIFIFALTLR"
     gene            4551..>5326
                     /locus_tag="VD694_07330"
     CDS             4551..>5326
                     /locus_tag="VD694_07330"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HXW12554.1"
                     /translation="MGSGVVGSATGQGFHKLGHDVIFYDISKERLRTLKNNGYKVAET
                     LSDAMSQTDISFVCVNTPTHNSQQDLSQILSALYQLANYLNSTDKRHMLVFRSTMLPG
                     TMRSVVLNYLEKNCTKKRGVDYEVAYNPEFLRQISALDDFFKPDRAIIGEEGSSELSK
                     LLVDIYKPLTKNIITTSFEAAELIKYASNCFLSLKISFFNEIGLICKHLGIDDKVVSL
                     GVSLDKRIGKYGTEFGRPFDGMCLPKDTQALASFIKQNRI"
BASE COUNT         1788 a          876 c         1070 g         1592 t
ORIGIN      
        1 gtgaataatg gaacttcctt aatagtaaga aacgtaaatg gattaccgaa catattaaat
       61 aaagttaaaa ctcaatttta gatactaatt gtcagatact gataaggata gaactgcatc
      121 tctgagcaga agtacatctg aaacaacaat aaaactagat gttaatctcg acggagaggg
      181 taaggcgcag atatcaagtg gtttgaaatt tctagatcac ctgataacga cttttagtaa
      241 atacagcctg gttgatatag aagctgaaat caaatcgcac gattcgattt tacatcattt
      301 gatagaagat attgctatct gtttgggcca gagtcttgat aaggcattgg gaaatagagc
      361 cagaattatg cgatttggat atgccattgt gcctatggat gactcgcgta gtaattcagc
      421 aatcgatctg gtcaagaggc aatactcaaa atttgaatta aaactagaaa gaaatgaagt
      481 ggaaggtata gcaaaagagg atattgaaca cttctttaga tcattacttc agaatcttgt
      541 tgcctgcact catatattgg tagaatatgg agaagacgat catcataaat tagaatctgc
      601 cattaagagc tttgccattg catttagaaa tgctgcagct attgatcaaa ggagaaaagg
      661 ccttcctagt accaaagaca tgatgtaaat gacaaaaata gcaatttttg attttggggc
      721 aggtaatata tttaatttgc atcaatctct ccttagtaat ggagctcaat atgtagacgt
      781 cataaggtca ctaaaggaac tagaaaatta tgatggatta gttttaccag gagttggtaa
      841 ctttgatgcc gccattggct ctatgcaaaa agattcagcg ttattgaatg ctgcagtaga
      901 taagggtatg ccaatactag gcatttgtct tggccttgag atgctatttg ataaaagcga
      961 ggaaggagta ttggagggtc ttaaagtatt agatggcaat gtcctaatgc ttccaaaaac
     1021 taaagtcaaa gtacctcaca taggttggaa taatttgaga attgttaaca atgaaagtaa
     1081 ccttttgaag gatatcccgc aggattcctg ggtctatttt gttcattcat atcatattga
     1141 accccaagat gaaaagctca ttgcagcaat aactgactat ggatcaattt tgcctgtcgt
     1201 agtcgaacgt tcaaatcttt ttggaaccca gttccaccct gaaaagtcag gaaaaattgg
     1261 agcccaaata atgaaaaatt ttgtcaatat ttgtgaagaa aacgaatgaa ggtattagca
     1321 gctattgaca taatgaatgg tgaagtagtt aggttaacta aaggggacca agctacaaaa
     1381 aaagtatata gtaaagaccc tgtggaagtt gcaaaaaaat gggaaaaaga tggtgctgat
     1441 atgttgcaca tagttgacct tgatgctgca tttggaagtg ctaccaataa tctcttaata
     1501 atctctgaaa ttctacaagc ggtaaatatt cgagttcaga ttggaggtgg tattcgcgat
     1561 actgatactt ttgaaatgat tgcaaagatg ggattttcaa gaattgtagt tggaactatg
     1621 gcatatcgaa atgcaaatga attacgttta ctttgtaaga attacagtga caagattgta
     1681 atttctcttg acgaaataaa tggaaaggta atgatcgatg gctggcaatc ctcttctgac
     1741 tatactgttg acgatgccat aaacaagttc aataagtttg ggattagcaa tttccttctg
     1801 actagcataa tcaaggatgg aacactttca ggtccagata ttgttacttt aaatagcatt
     1861 aatacagatc gaaagtcaaa gataattgct agtggtggaa tttcaaactt gttagatgtg
     1921 ctaagggttc gatcaattgg atgtgatagt gtaattctgg gtaaggcaat atatgaagaa
     1981 aggttggata taaaaaaggt gaaggcttta gcataatgcc attatcaaaa agaatcattc
     2041 catgtctgga cgtggataat ggtagagttg tcaaaggaat caagttcgta ggagtaaagg
     2101 atgcaggtga tcctgttgaa ctggccaaaa aatacagtga ccagggagct gatgagcttg
     2161 tcttccttga cattactgcc tcaagacagg accgtgagat tatgaaaagc atggttagaa
     2221 aagtagccag tgttatagac atacccttca cggtgggagg tggcattaag acgctttcag
     2281 acgcaagaga aattctcctc aatggggcag acaaagtctc aattaacact gcatctgtca
     2341 agacccctaa attggtaact gatctcatga atatattcgg tagacaatgt gttgtagttg
     2401 caattgatgt aaaaagaaat tatgaaattg atgaaaatca taaagagcat acgataattc
     2461 atggtcctga cagggatttt tattttgaag tgatgatata cgggggatct aaaggtacag
     2521 gaatcgatgc cgtccaatgg gcaaaaaaag tagaagagct tggagccgga gaaatactct
     2581 tgactagcat agatgcagac ggtactaaaa atggttacga tattgaattg acaaacacaa
     2641 tatgcaatag tgtgagaata ccggttattg catcaggtgg ctgtggctct tcagatcaca
     2701 tggttgaagc attcaagaaa actgatgtag atgcagtatt ggcagcttca atatttcatt
     2761 atgacaagtt aactctggat aaggtaaaaa aatatctggc tgaaaaggga attcagacta
     2821 gaatatagaa ataaaattca ttcgcttaaa tcaaattatg tttagaacta gagtaacgaa
     2881 aaaataataa aactttatcc tcaacgtaac gttagcgcaa aaataaatat gccagctatc
     2941 atttctacag tcagcaagta atctttgatt ttctttatcc ggctagcatt tactttcctg
     3001 attcctctaa ttatatgttg atcacgtatg gtaacaagag catacaacct cgtgagcgcc
     3061 atcaggaaat ttattcccag atagactgga agtatcaaaa agtcttttgg attgcgtctt
     3121 aaatgtggaa taattttaat agtccttccg actaaccata aaataagtat cgaaatcgcc
     3181 aatccccatt gattttcaaa aagtgcaatt gagaaaaata taggacctag caatagtgta
     3241 aagactgaaa tgaatctgtc tatcattgaa aatgcgaggt agggacattt ccatacccac
     3301 ccattccaca agctttggaa atcagaatta tgactgttcc ttgcccatct aatgcgttgt
     3361 ctgataaact gatcaaaacc aggcgcagca gatgaatata ttactgcaga actctggtaa
     3421 taggtcttcc atccttcctg ctgaacgagt cttgtaaagc atttatcttc tcctgattcc
     3481 ttttttctac caagtataac ttcatttaga aagaaattca tcttgggaag aagaatctcc
     3541 cttcgataca gtgcggtctt accactcaaa catgaaagag cttttcctcc tgctgtttgt
     3601 gctggcatat cataatagtt tcgcatatcc caaaagatat cagtcatctt ctgccaaatt
     3661 gttcttgttt caatgggatg atatcttggg gtaacacccc ctatttttgc atcaactcta
     3721 aaaggtcgca gtgcattttc caaaaaattt gaatcccaca ttgtgtcgct gtctgtaagc
     3781 gcaagaatct taccttttga ttctgcaatt ccatctgcca aggcagccct ctttccaggc
     3841 tttgaagtca ctatcaactt tagattgctc ttgccttgtt ggaattcctt aaattcagct
     3901 atgctggctg gatcggactt gtcaatgatt gctattattt ctgccggttt atttttccac
     3961 catgattcca aggatctcct aaagattttc ttgtcctctt tgtatactgg tattattaca
     4021 gacacggtaa gctgttctac atccgttgaa gcatccttag ttgaaccagg tattattgga
     4081 gaatagaggg ttgcaactat tttcttgatt aaccatattg tccatctcca agttccaatt
     4141 atgcccagtg ggataatcag ccaataattg tatagagaag ttggaatgaa atttctaaaa
     4201 atgtaatctt tcagaccatt gaactggtaa atgatatcat taatgtcaaa ccagaatggt
     4261 gaaataagga gtgaaacggc aaaggcaata agtaaaaggt caaaaattat gttgccaaaa
     4321 attccgccac gcttttgtag cgattgatgc ccggatgaat tcactaatta atttccattt
     4381 tcagattatt tattagtaac tttcagatcg gatagaagtt aataacgtaa catggttagt
     4441 gttaattctt actatatttc ttactcgaaa atcaaaagga attatataaa tatgattaat
     4501 tataaccccc ctataataaa gggggatttt gcacgagtaa gataagcatt attggttctg
     4561 gtgtagtagg aagtgcaaca ggtcagggat tccataagct aggtcatgac gttattttct
     4621 atgacatttc aaaagaaagg cttagaacct taaaaaataa tggatacaag gttgcagaaa
     4681 ctttgagtga tgcaatgtca caaacagata tttcatttgt atgtgttaat actccaactc
     4741 ataattccca acaagacctt tctcaaatac tttctgcact gtatcaactt gcaaactatc
     4801 tgaattcaac agataaacgc cacatgctgg tattcaggag tacaatgttg cctggcacta
     4861 tgcgtagtgt tgtgttaaac tatcttgaaa agaactgtac caaaaagaga ggagtagact
     4921 atgaagttgc ctacaatcca gaatttctga gacagatttc tgcattggat gatttcttca
     4981 agccagatcg agcaataatt ggagaggagg gtagtagtga attgtcaaaa ttgctagtcg
     5041 atatatacaa accattgaca aagaatatta tcacaacatc atttgaagcc gcagagctca
     5101 tcaaatatgc atcaaactgc tttttgtcat taaagatttc attctttaat gaaataggat
     5161 tgatttgcaa acatttggga atagacgaca aggttgtgag tttgggcgtt tcgttggata
     5221 aaagaattgg caaatatggt actgaatttg gaagaccgtt tgatggaatg tgcctaccaa
     5281 aagacactca agcattggct tcattcataa aacaaaacag aattga
//
LOCUS       DASPFX010000340         2324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1652766, whole genome shotgun sequence.
ACCESSION   DASPFX010000340 DASPFX010000000
VERSION     DASPFX010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1652766"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(334..1356)
                     /locus_tag="VD694_07335"
     CDS             complement(334..1356)
                     /locus_tag="VD694_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HXW12555.1"
                     /translation="MKIAVVGIGVAGAYIMNKLSQDGDNTVKGFERMPESKHDAVCAW
                     ATCENVMADLVKECGLDFSMYVLHKGKNMKVELMDDSIDIKLRGMVAYDKLQLIKDMV
                     RGTDIEFGKVPRKENLESDFDLIVDSTGFHRTYLPKVSNETWIPCVQYKVRYDRNRNP
                     YDDFYLKAFSSMSGYFWYFPLGNGYAHIGAGDFGRKYTIGFLDDFLNTHECEIIHKVG
                     RPVRISPPSLCEPFSDGRKTIGVGESIGTVYALLGEGIVPSTWCAQLFVEHLNDLKQY
                     RNAVLRKFDIYALVHKFIKMKISGRFSMLRNSRDLLRIYTHMKMNEKRYGMKVEMKNM
                     LKISKL"
     gene            complement(1794..1952)
                     /locus_tag="VD694_07340"
     CDS             complement(1794..1952)
                     /locus_tag="VD694_07340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12556.1"
                     /translation="MNSGENLLTVNNSVNGNILVNEICKQPLTEESEPTSGQSTIISG
                     KLRVGMTI"
BASE COUNT          732 a          488 c          374 g          730 t
ORIGIN      
        1 cagattcttc gagtgcttgg cagcagcaac taggatgctg ttagaatgaa tttctatcct
       61 aatcttatca aaaattaaag taaattccaa caatcatcat gttgatcaca ttatccagat
      121 gaagcaacaa gtactgttct gtcaaatatt aatgcacgaa tatatcaaag acaatatttg
      181 atgtaataag aatcatacta gaatacaatt tgactcctaa ataaaaaatg aaataaagaa
      241 atacattcat atgaagtaca ttcgattgga aatagacgag ccagactgta gcaattagtg
      301 tattttcgga gtattacgaa cagccaagga ccctcataat tttgagatct ttagcatgtt
      361 cttcatttca accttcattc catatctctt ttcattcatt ttcatatgag tataaattct
      421 caacaagtcg cgtgaattcc ttagcatgct aaatctgcct gagattttca ttttgataaa
      481 tttatggacc aacgcgtaaa tatcaaattt cctcaatact gcatttctgt attgtttcaa
      541 gtcattaaga tgctctacaa ataattgtgc acaccatgta gatgggacga taccttcacc
      601 taacaatgca taaacggtac cgatcgattc gcctaccccg attgtttttc tgccatccga
      661 aaacggttca catagagaag gggggcttat tctaactggt ctgcctactt tatgaatgat
      721 ttcgcattca tgcgtgttca aaaaatcgtc caggaatcca atcgtgtact tacgtccgaa
      781 atcaccagcc cctatatgtg catatccatt acccaggggg aaataccaaa agtaacctga
      841 catactcgaa aatgccttca agtaaaagtc atcatatgga tttctattcc gatcgtatct
      901 cactttgtac tgtacgcatg gaatccaagt ctcgttacta actttaggca aataagtcct
      961 atgaaatcct gtagaatcta caataagatc aaaatcagat tctaagttct cctttcttgg
     1021 cacctttcca aactctatgt cggtaccacg taccatatct ttaatgagct gcaatttatc
     1081 ataagcaacc atacctctta acttgatgtc aatactatca tccatcaatt cgaccttcat
     1141 atttttacct ttatggagaa cgtacatgct aaaatccaaa ccgcattcct ttactagatc
     1201 agccattacg ttttcgcatg ttgcccaagc gcacaccgca tcatgttttg actctggcat
     1261 tctttcaaaa ccctttactg tgttatcccc atcttgactg agtttgttca tgatgtatgc
     1321 ccccgcaaca ccaatcccaa ctacagcaat tttcattatt gagcatgatc cacaagtaac
     1381 taataaaaag attgactagc tcaccctgaa tctgttcagt ttaagataaa gcgtttggca
     1441 agtagagagc attttctcat tgtgactaga tcctaagaaa gagggcttag aacctcttca
     1501 aaatggtggt tgattttgga aatatacaag agagctgata gtaaagcaaa ggattgctaa
     1561 gtatatttag cctaattctg caaagaatga agtttcaagc tctatttcta gaccattttc
     1621 cgccaatcca actgtaaata gctatcggtg agccatttgt cccaaaatag ctttgatttc
     1681 ttatcaggtt cttgtgaaaa ccagctatcc tgattctaac aattcagtat ttggatagtc
     1741 acagcaatat cccgtttcca tattgacttc acagttgttc ttgatattgt gcattaaatc
     1801 gtcattccca ccctcaattt cccagatatt atcgttgact gaccgcttgt tggttccgat
     1861 tcctctgtta acggctgttt acagatttcg ttaacaagta tgttgccgtt tacagaattg
     1921 ttaaccgtta acagattttc accactgttc aatgaggttc gcgctcaaag caactgaacg
     1981 atgcagttga acacatcttt gtttaagata ccagaataat ttaccttatg ggatttttcc
     2041 atgattcgtt caaaacgttc aattagactg ttcaatatca acagaaaaac cttttatgta
     2101 tagcaacctc ctccttgagc acgaattatc cttaaggtaa aagaggtact ggattggtcg
     2161 actttctttg caaatgtatg gtcaggagcc gaatctagtt aggcaaagga ttattaaatg
     2221 aactaagcac tcaccctaaa agcacgattt ctcataaatc ctcgaagatg aaaggggtta
     2281 agaaatagac caagaaaaat tgtaacaatt aatgacatat cgcg
//
LOCUS       DASPFX010000341         2598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2082285, whole genome shotgun sequence.
ACCESSION   DASPFX010000341 DASPFX010000000
VERSION     DASPFX010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2082285"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..469)
                     /locus_tag="VD694_07345"
     CDS             complement(<1..469)
                     /locus_tag="VD694_07345"
                     /inference="COORDINATES: protein motif:HMM:NF028194.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HXW12557.1"
                     /translation="MKQRPVGMPTENDFQLVRVEVPDLRDGEFLVRNLWMSVDPYMRG
                     RMREIKSYISPFQIGKPLEGGCVGQIIKSNNNKFTVGDYVLGNLGWREYWISDGSGSD
                     VTRIDPNMAPIQWYLGILGLTGLTAYMGILKIAQLIENDNSTVFVSAAAGAVGS"
     gene            695..1882
                     /locus_tag="VD694_07350"
     CDS             695..1882
                     /locus_tag="VD694_07350"
                     /inference="COORDINATES: protein motif:HMM:NF017380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF763 domain-containing protein"
                     /protein_id="HXW12558.1"
                     /translation="MAVKLKSSSAAMINLPLHGGHVPPYLIRKMIKLSNSISKVIVDE
                     YGQGEFLRRLSDPLWFQAFGCVLGFDWHSSGVTTVVTGVLKQSLNEEIHAISIAGGKG
                     KKATQTKNDIPKLAERYYNLSSTKIDDLMYASRMAAKVDNAVVQDYYSLYHHVILFDE
                     HGDWTIIQQGMNPDSKMARRYHWNSENLESFVSEPHAGIICGCKSPNILNMTSTDSVE
                     NQKICVELANSDANNLKSSVYKVERLIRTIREKNSTLDNWIMKEHNKNIDDRQYEEYY
                     EMPRRLDWEAFRKSYDVRPQNYEQLISIPGIGPAAVRALSLIGELIYGTKASWQDPVK
                     FNFAHGGKDGVPYPVARKTYDKSISYLSSAIEGAEIEREQRIQALRKLAQYSARMFNQ
                     DKS"
BASE COUNT          905 a          454 c          463 g          776 t
ORIGIN      
        1 cagaaccaac agctcctgca gctgcagaaa caaatacagt actattatca ttttcaatta
       61 attgtgcaat ttttaaaatg cccatataag ctgtaagacc tgtcaaaccc aatataccca
      121 agtaccattg aattggagcc atgtttgggt cgatccttgt tacatcactc ccgctaccat
      181 cggaaatcca gtattctctc cagcctaaat ttccaagaac ataatcgcct acagtaaatt
      241 tgttattatt tgattttatg atttgaccta cacatccacc ctcaagaggc ttccctattt
      301 gaaatggaga tatatagctc ttaatttctc tcatacgtcc acgcatatat ggatctactg
      361 acatccataa gttgcgcacc aagaattcgc catcccttag atctggaact tctactctga
      421 caagctgaaa atcattttca gtaggcattc caactggacg ttgcttcaaa tgaatctcac
      481 gactgaaaag tttctctatt gtcatttacg attaatccaa gagaaatgta tatcaaacta
      541 ttggttatat tctcgatgag tttcatcaga tattcttaat gaacagcagg caaaatccat
      601 ctgttataca aataaaatat cactagtgac ttaaataatt ccactaattt acttcatatg
      661 catttagtat ataggttaga cacgatatca atttttggct gtaaagttga aatcctcttc
      721 tgcggctatg attaatcttc cgttacatgg aggacatgtt cctccatatt tgattagaaa
      781 gatgatcaaa ctgtcaaatt cgatatcaaa agtaattgta gatgaatatg gacaaggtga
      841 atttctaaga aggctatctg atccgctatg gtttcaagct tttggttgtg ttcttgggtt
      901 tgattggcac tcttcaggag ttacaacagt agtaacagga gttttaaagc aatcacttaa
      961 tgaagaaatt catgcgatat caattgcggg cggtaaagga aagaaggcta cacagacaaa
     1021 aaatgatatt ccaaaacttg ctgaaagata ttataactta tcttcaacta agattgatga
     1081 tttgatgtat gcaagtcgaa tggccgcaaa agtagataat gctgtagtac aagactatta
     1141 ctctttatat caccatgtga ttctttttga tgaacacggt gactggacta taatacaaca
     1201 aggaatgaat cctgatagta aaatggcaag aagatatcat tggaattcgg agaacctcga
     1261 gagcttcgtg tccgaaccac atgcaggaat tatctgtggc tgtaaaagtc caaatattct
     1321 caatatgact tcaaccgatt ccgtagaaaa tcagaaaata tgcgtggagt tggcaaatag
     1381 cgatgcaaat aatctaaaat catccgtata taaagttgaa agattgatac gtactattcg
     1441 agaaaaaaat agtacattag ataactggat tatgaaagaa cataataaga atattgacga
     1501 tcgacagtat gaagaatatt atgagatgcc tcgaagattg gactgggaag cattcagaaa
     1561 aagttacgat gttcgacccc aaaattacga gcaactaatt tctattccgg ggattggacc
     1621 agcagcagtt agagctctgt ctctcattgg tgaattaatt tatggaacaa aagcatcttg
     1681 gcaagatcct gtgaagttta attttgctca tggtggaaaa gatggagtgc catatccagt
     1741 agctcgtaaa acctatgata aatctataag ttatctttct tctgcaattg aaggagctga
     1801 aatagaaaga gagcaaagga ttcaagcgtt gcggaaattg gcacagtatt cagctagaat
     1861 gtttaatcag gataaatcat gacgttacac tattcgacat aacctttgaa aaaactgcaa
     1921 ttttaatctt ctaaagcata tccattactt tagtgtaatc aataaagttc gctttatcta
     1981 ttatacgagt caagagaaat atggtttgag attgtgaggt cgtttacatg aaattagtta
     2041 agatcttaag attaaagatg gaaaaagcat aattttatct ttacaatatt tacaaatagt
     2101 tgagacagat tcggtgaata ttcctatatt catatactat tatctaaaaa actcgaagat
     2161 ctaaaatatt ttcatcgaaa attcgaattg ttttaaagtt tttagagctg aatcgtaaaa
     2221 ttagtggtat gtatcaaata aataactcta atcgcgtcag cgaatccgat tattctcata
     2281 tgattagaga accgagagtt catgcgcgga ggtaaaaata ccgctcactt atggatggct
     2341 tcgcccctat gataattaca aatcagataa gcattacaat actcagaggc acatcaatct
     2401 aaggcacggc tatggttcag gtgaaccaat tgatagttta acagggttaa caagggaaca
     2461 aaaaaggaga aatgctttga gacaagatac cacttccata aatatacatg ggaacaacta
     2521 caacacaaat actcgaccct ttgacaatgc tcaaatccag aataattcag gtaatcaaag
     2581 tgcatttgac atgcctct
//
LOCUS       DASPFX010000342         3324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1227161, whole genome shotgun sequence.
ACCESSION   DASPFX010000342 DASPFX010000000
VERSION     DASPFX010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3324
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227161"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..929)
                     /locus_tag="VD694_07355"
     CDS             complement(<1..929)
                     /locus_tag="VD694_07355"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HXW12559.1"
                     /translation="MDKRTSENAPSNSITSDSETSTGKDSFATLVNEGFNAGQRIAKI
                     SVVTLICIGIAELLMGYISGSVVATADGVDSMSDAMISFIVLIGLRFARRPADRKFQF
                     GYHKVESLAAMIAAIGMIVIGIFIAYHSYEGLIHPNEIKQPIPTMIVLAIAGAISLQR
                     AFQMRHIANKYNLLSLKTDAKNSIKDGSASVLGFLSVLLATQFGFLQADAIGGMVIAG
                     FIFSVAYVSLKQSSLILVDAWYNPVSADFIKKLVEQKFEGDVTVRSIKLRQTGMISRA
                     EIHVEMDGKKPLDEVEMILLNTEKAIKSRMPSM"
     gene            1125..1478
                     /locus_tag="VD694_07360"
     CDS             1125..1478
                     /locus_tag="VD694_07360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12560.1"
                     /translation="MSFLVMSIVISLVMIPSFAIFSFSQSNNTLPSDLPSTNPLSNAS
                     VSEESNDDTSIVNDTSFASLSRSLAETNQSDDEQTAPLPPSTESEIDDEQTAPLPPST
                     ESETDGETNQEEGIQ"
     gene            1672..2295
                     /locus_tag="VD694_07365"
     CDS             1672..2295
                     /locus_tag="VD694_07365"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HXW12561.1"
                     /translation="MGKYELPSLPYSYDALEPHIDAKTMEIHHTKHHQTYTDKLNAAL
                     EKCPAEIQEKDIVEILSNLDKVPADQKGAINFNGGGFDNHRIFWQNMKSNGGGEPSGS
                     IADAINESFGSFSAFKEKFSSTTVVIQGSGWGWLVYNPSTKKVEYKSMPNQTSPRTEG
                     LIPLLGCDVWEHAYYLKYQNKRPDYVSAWWNVINWQDVSERLDKAKK"
     gene            complement(2348..2521)
                     /locus_tag="VD694_07370"
     CDS             complement(2348..2521)
                     /locus_tag="VD694_07370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12562.1"
                     /translation="MFFSVAEAQTYNKLEFVYNIEQMKGHLEQAVVNKENGNNTLTQA
                     HIQHPIVEIYDAR"
     gene            complement(2881..>3324)
                     /locus_tag="VD694_07375"
     CDS             complement(2881..>3324)
                     /locus_tag="VD694_07375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12563.1"
                     /translation="TSPSEHTAFKELREVYHPIFEKYGVDLVLGGHNHNYQRTYPLTY
                     NPNDSGEPKVTSAATGEYDGQKDGIVFAIVGTGGVNLYPFTGQAPFVEKQFANKFGYL
                     NIDVSNGNPHSKLTGTFHDNKGGQILDQFIIEKELKNKNSEIVSS"
BASE COUNT         1062 a          625 c          567 g         1070 t
ORIGIN      
        1 tccatgctgg gcattctaga tttgatggcc ttttcggtgt taagcaatat catctcaacc
       61 tcatccaatg gtttctttcc gtccatttct acatggattt cagctcttga aatcatacca
      121 gtttggcgca atttgatcga ccggactgtt acatcaccct caaacttttg ctccactagt
      181 ttcttgataa aatctgcgct aactggatta taccatgcat caaccaaaat aagagatgat
      241 tgtttcaaag aaacatatgc cacagaaaat atgaatccag caattaccat tccacctatt
      301 gcgtcagcct gcaaaaaccc aaactgtgtt gctaaaagta cactcaaaaa accaaggaca
      361 gaagccgatc catcctttat cgaattttta gcgtctgttt ttaatgaaag tagattgtat
      421 ttgttggcaa tatgtcgcat ttgaaatgct ctctgcaatg atatggcacc ggctattgct
      481 agaactatca ttgttggtat tggttgttta atttcatttg ggtgtatcaa tccttcataa
      541 gaatgatacg ctatgaatat tccaatcaca atcataccga ttgcagctat cattgctgcc
      601 aagctttcta ctttatggta accaaattgg aactttctat cggcaggtct gcgtgcaaat
      661 cgaagtccga tcaatactat aaaagagatc attgcatcgg acattgaatc tacaccatca
      721 gctgttgcta ccacacttcc actgatgtat cccattagta attccgcgat tcctatacag
      781 attagggtta caacagaaat ttttgcaatt ctttgtcctg cattaaatcc ctcatttaca
      841 agtgttgcaa aagagtcctt gcctgttgaa gtttctgaat ctgatgtaat tgaatttgaa
      901 ggtgcgtttt ctgaagttct tttatccaaa gtatgagttg tctaataata gactcgataa
      961 ttattaaaga ttatgaagtg attttagaag ctaggtaaat accttaaaaa agctaatttt
     1021 gtgctccaat ttctaatgtg cttataaagc caaatagagt ctcaaacagt ctactttata
     1081 tttgaattac gctcattatc aattcattca tgttggatag cagaatgagt tttctagtca
     1141 tgtctattgt aatttctcta gttatgattc catcatttgc tatattctca ttctcccaat
     1201 caaataatac tttgccaagc gacttgcctt caactaatcc gctatcaaat gcttcagtat
     1261 cagaggaatc aaatgatgat acttcaattg taaatgatac gtcctttgct tctctgagca
     1321 gatcgctagc cgaaactaat caatcagatg acgaacagac agcacctcta ccaccttcca
     1381 cggaatctga aatagatgac gaacagacag cacctctacc accttccacg gaatctgaaa
     1441 cagacggcga aactaatcaa gaagaaggca tacaataaaa ctagccgcaa gtaaatgaca
     1501 acaatttatg aataatatat attcaaatca agttactatt ttgttatata acagtaataa
     1561 tgacatactg taaaattcat tcagagatgc cacactcttg acttgatgtt cccgtacgat
     1621 agataatttc tatatcgtaa gagttaatag ttacaaagca aaaataaaga catgggaaaa
     1681 tatgaattac cttcgttacc atatagttac gatgcattgg aaccacatat cgacgcaaaa
     1741 acaatggaaa tacatcacac aaagcatcat caaacttata ctgataagct gaatgcagct
     1801 cttgaaaaat gcccagcaga aattcaggaa aaagacattg tagaaatttt atccaatctc
     1861 gataaggtgc ctgcagatca gaaaggcgca atcaatttta acggaggagg atttgacaac
     1921 catcgaatat tttggcagaa tatgaaatca aatggtggtg gcgaaccaag tggttccatt
     1981 gcggatgcaa tcaatgaatc atttggaagc ttctctgcat ttaaggagaa attctcctct
     2041 actacagtag taattcaggg tagtggatgg ggatggcttg tatacaatcc atcaacgaag
     2101 aaagttgagt ataaatcaat gccgaatcaa actagtccac gaacagaggg tttgatacca
     2161 cttttaggat gcgatgtgtg ggaacatgca tattatctta aatatcaaaa caaaagaccg
     2221 gactatgtct ctgcttggtg gaacgtaata aactggcaag atgtatcaga aagattagat
     2281 aaagccaaaa aataaaaatc attttttatt ttctttaatt ttcagaattg tagactatct
     2341 ccttttacta tcttgcatcg tagatttcta ctattggatg ttgaatatgg gcctgggtta
     2401 atgtattgtt tccattttct ttatttacta cggcctgttc aaggtgaccc ttcatttgct
     2461 caatattata cacaaattct aatttgttat atgtttgcgc ttcagctaca ctgaaaaaca
     2521 taaaatgcaa taccacaaat agaaatccaa agcatgagat agcaatataa ttagagcttg
     2581 taatatttgt gatattgaat taaatctact caattattac cagccatgta aaataacagg
     2641 ataatttaag gtttatccag tttctcattt aagataatat ggttagtaaa taagatatcg
     2701 tttattattg gtttgtagaa tcacgttacc atttgagaat tatcaagatt agttatccgt
     2761 attaatacca agttactgcg ttgggtaaag cgattctctt actcacaata aaataaattg
     2821 cacaagttcg gaaaactcgg aacaattgtc agttcttgat gcagtgtttt tatttgccta
     2881 tcagcttgaa actatttcac tgttcttatt ttttaattct ttttctatta tgaattggtc
     2941 cagaatttga ccgcctttat tgtcatggaa ggttcctgtc aattttgagt gtggattacc
     3001 attgctaaca tctatattga gatatccaaa tttgttggca aactgttttt ccacgaatgg
     3061 agcctgtcca gtaaagggat acaaatttac tcctcctgtg ccaactattg caaagacaat
     3121 accatctttt tgaccgtcgt attccccagt agccgcactt gttacttttg gttcaccgct
     3181 atcattaggg ttgtatgtca aggggtaagt tctctgataa ttgtgattat gtcctcccaa
     3241 aactaaatct actccgtatt tctcaaagat cggatgataa acttcccgga gttctttgaa
     3301 ggcggtatgt tccgaaggtg aggt
//
LOCUS       DASPFX010000343         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1796242, whole genome shotgun sequence.
ACCESSION   DASPFX010000343 DASPFX010000000
VERSION     DASPFX010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1796242"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1989)
                     /locus_tag="VD694_07380"
     CDS             complement(<1..1989)
                     /locus_tag="VD694_07380"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HXW12564.1"
                     /translation="MSKKSIQIATSDTIVNASALSESRPIQFKPFQSARFLVIGMELE
                     SQKKHKITIMSKLEGFEQIIIPFTFVDITSNKKEKVIISSNLPEESDTQEYGETMFMN
                     FASPLVLSGRKAYIVCSSNGALSANWTWMGARYDNGGLYVPPARAFGRIIVEISVDDG
                     VRKRLPNFVISSRHENGTLCTHHEVAGIHVKRTLFVPIENKGFIQILNFDTEKMNEIF
                     GNNTRKQSTKKIRVHFLIDGNITSYGLAAISQSNFSRYYKSENCLQIRTIAKKGVAHY
                     FGSIGISPKNLKPSKILTDSFDNDLELSYDVELEEGLTKEIALIGAGDFTTSQDCLNE
                     YKTIRDNYQKLHEETKNYHTNISTSTFTIRNANSSSISNSTISKLAKALKKAKTALEY
                     LKANYDNLGEGISAGLPRFPNYWARDTGWSLRGYLSLGQYDFSLRVIDNFLKRQAKHS
                     HNGAVKGELPMVISGRTFLHNTTYGSADSTFLFPWAIREYVNGTGDTQYLAKRWESIV
                     QLIDSGFLKDIDGDGFIEHGFSGTAEKLPIQDSTWMDHIDRRKSANDVQALFYESLLI
                     GSELAKILDDKEHEKSWLSSAQKLRDKIDREYWEPKLGFYYDTIRKDLTKDSSIRPNA
                     LVMLLSEVVKDQHQARLVLDRLEKDDMTTPWGMRSLSSL"
BASE COUNT          564 a          408 c          331 g          698 t
ORIGIN      
        1 caaactactc aatgatcgca ttccccatgg ggtagtcata tcatcctttt ctagtctatc
       61 aagcactaac cttgcctgat gttgatcttt tactacttcg gaaagcaaca ttaccaatgc
      121 atttggacga atgctactgt cttttgtcaa atccttacga atcgtatcat agtaaaatcc
      181 tagttttggc tcccagtatt ccctgtcaat cttatctctt aatttttggg ccgacgaaag
      241 ccacgatttt tcatgttctt tatcatcaag gatctttgct aattcacttc ctattagtag
      301 actctcatag aagagagctt gtacgtcatt tgcactcttt cttctatcta tatgatccat
      361 ccaagttgaa tcttgaatgg gtaatttttc tgccgttcct gaaaaaccgt gttcaataaa
      421 cccatcacca tcaatgtctt taagaaaacc tgaatcaata agctgaacta tggattccca
      481 tcttttcgca agatattgag tatctccggt accattcaca tactcacgta tggcccaagg
      541 aaacaagaaa gttgaatctg cagaaccata tgttgtatta tgtaggaatg ttctcccact
      601 tattaccata ggtaactctc cctttaccgc accattgtgg ctgtgctttg cctgtcgttt
      661 cagaaaattg tctattactc tcaaagagaa atcatattgg cccaaagata gatatcctct
      721 tagtgaccaa cccgtatcac gagcccaata attgggaaac cttggaagcc ctgcactgat
      781 tccttcacca agattgtcat aatttgcctt tagatattca agggcagtct ttgccttttt
      841 gagtgccttt gctaactttg agattgttga atttgagatt gaacttgaat tagcattacg
      901 gatagtaaag gtagatgtgg aaatattggt atgataattc tttgtttcct catgaagttt
      961 ttgatagttg tctctgatcg tcttgtattc attaagacag tcttgcgaag ttgtaaaatc
     1021 accagcacct attaatgcaa tttctttggt caatccttcc tcaagttcga catcataaga
     1081 taattccaaa tcattatcaa atgaatctgt tagtatcttt gatggtttca aattctttgg
     1141 tgaaatcccg atacttccaa aataatgcgc tacgcccttt tttgcaattg ttctaatctg
     1201 taaacagttc tccgatttat aatatcgtga aaaattgctt tgagaaatgg ccgccagtcc
     1261 gtaactagtt atattaccat ctattagaaa atgaactcgt atttttttag ttgattgttt
     1321 tctcgtattg ttaccaaata tttcattcat tttctcagta tcaaagttaa gtatttgtat
     1381 gaaaccctta ttttcgattg gaacaaacag ggttcgttta acatgtattc ctgccacctc
     1441 atgatgtgta cacaaagttc cattttcatg cctcgaagag atgacgaaat ttggaagtct
     1501 tttcctaacg ccgtcatcta ctgaaatttc gacaattata cgtccaaagg ctcttgcagg
     1561 aggaacatat aatccaccat tgtcgtatct tgcacccatc cacgtccaat ttgcagacag
     1621 agctccatta gaagaacaga caatgtaggc ttttcttcca gacaatacta ggggtgatgc
     1681 aaaattcata aacattgtct caccatattc ttgggtatca gattcttctg gtaaatttga
     1741 tgaaatgatt actttttctt tcttgttgct tgtaatatcg acaaaggtaa acggaataat
     1801 tatttgttca aatccttcaa gcttactcat aattgtaatc ttatgtttct tttggctttc
     1861 aagttccatc ccaatcacta gaaatctagc gctttgaaat ggcttgaatt gaattggtct
     1921 ggactcagat aatgccgaag cattaactat cgtgtctgat gtggctatct gaatggattt
     1981 ttttgacata ggtagctcat c
//
LOCUS       DASPFX010000344         2476 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1955491, whole genome shotgun sequence.
ACCESSION   DASPFX010000344 DASPFX010000000
VERSION     DASPFX010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1955491"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(180..410)
                     /locus_tag="VD694_07385"
     CDS             complement(180..410)
                     /locus_tag="VD694_07385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12565.1"
                     /translation="MNNISNWEDIVKKEARGINDYDLGEVHEVEPEIVVTKKGVVDKD
                     KFYLPKSLVERFDGHKVFFSITKEDAQNYRKD"
     gene            723..1730
                     /locus_tag="VD694_07390"
     CDS             723..1730
                     /locus_tag="VD694_07390"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HXW12566.1"
                     /translation="MSTVLSYNKDQVKMDGSIDDMKEGYNVWVDVINPDEKELDRLTK
                     KFNLNKEAIQTSINKSKRPEIRQFDEHTFTVVVDMKNKDPETLLIEAVYFFLGKNWLV
                     TIHSPEVDLKQIVERLFKIQNETIKNTRIDALYYNILAGLVTKYEQLLTALELSVNEY
                     QRRSFVRPLPAIFESIDILSRQAILLRRQFWHVRTIINFLLHAEREKDDVKYVEMVHD
                     DITQLIDFVESYESTINSIRELYVAKVSLQINETMRILTIFTVILLPLALIVGIYGMN
                     GIDLKNITEIPLGFIVVVVTMAVTVIAFVLFFIRKRWIVFGKADIDVEPNSKSTSSKT
                     N"
     gene            1777..2019
                     /locus_tag="VD694_07395"
     CDS             1777..2019
                     /locus_tag="VD694_07395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12567.1"
                     /translation="MYLTLSIIILIFLKLHTTTYIKAQVIGNMTSKCSGGKYTTIIWI
                     GGGPCQTIKSNPNNVTGLRDFLENKTEVTLIPREII"
BASE COUNT          846 a          383 c          434 g          813 t
ORIGIN      
        1 actgtgttca tataaagtgg catatcacac ggtttcatta aatattcgtg gtagaacagt
       61 cagtacaaaa gcaatgatat taaagcaatg atattggtct ataattttga tttgaggtac
      121 tattaattta tctttcaata aattataaaa ataaatgaat tgtgggtaat ttgacttgat
      181 taatcttttc tatagttctg ggcatcttct ttggttattg agaagaaaac tttatgcccg
      241 tcaaatctct ctactagact tttcggtaaa taaaacttgt ccttgtccac aactcctttc
      301 tttgtaacta caatttcagg ttctacctca tgcacttcac ccaagtcata gtcatttatg
      361 ccgcgtgctt cctttttcac gatgtcttcc cagttactta tgttgttcat aagatatatg
      421 attcaacatt tgatataaga gttcaacaat tctaaatcta ttaaaagaat attaatagag
      481 acatcacata ccatcttgca ttagcattac tttgaaagaa aatgttattt tctgtagtaa
      541 aaaaggaaat tttgtaggaa tatttaaact ttgtaagtac tatgtatttg ataagattat
      601 gcatcaatat atggatattt ttagggacaa tagtttgatg agttttagta acggggattt
      661 tatcgttggg aaaattttat gtttttatat cctgttgact ataatatatc aggtgatttg
      721 aattgagcac agtactttct tacaacaagg atcaagttaa aatggacgga tccatagatg
      781 atatgaaaga aggctataat gtctgggtgg atgtcataaa tcctgatgag aaggaactag
      841 atagacttac caagaaattc aatctcaaca aggaagccat tcaaacctcc atcaataaat
      901 caaaaagacc agaaattcgt caatttgatg aacatacatt tacagtcgtt gtggacatga
      961 aaaataagga tcctgaaact ttactcatag aggcagttta tttctttcta ggaaaaaatt
     1021 ggttggtaac aatccattct cctgaagttg atctcaaaca aattgtagaa agattgttta
     1081 agatacagaa tgaaaccata aagaatacac gtatagacgc tctatattat aatatacttg
     1141 cgggtcttgt caccaaatac gagcaattat taactgcgtt agaattatcc gtaaatgaat
     1201 atcaaaggcg atcgtttgtt cgtcctctac cagcgatatt tgagagtata gatatattgt
     1261 ccagacaggc catattgtta cgcagacaat tttggcatgt gaggactata attaattttc
     1321 tattgcacgc tgagagagaa aaagatgatg tcaaatatgt agaaatggtt cacgatgata
     1381 taacacaatt aattgatttt gtagaatcat atgaaagtac gattaattct atcagggaat
     1441 tgtacgttgc gaaggtatca cttcaaatca atgagacaat gagaattctt acgattttta
     1501 cagtaatact tcttcctctt gccctcatag tagggatata tggcatgaac ggaattgatt
     1561 tgaagaatat tacagaaata ccgttaggct ttatagtagt ggtggtaacg atggctgtta
     1621 ccgtaatagc ttttgttctg ttcttcataa ggaaacgctg gattgtattc ggtaaggcag
     1681 atattgatgt agaacctaat tcaaaatcaa catcctcaaa aacaaattaa ttagaaatag
     1741 gtctaatcac tgaaaataaa cttcaacact ttccaaatgt atcttactct gagcattatc
     1801 atacttatct ttctaaaact ccatacaact acttacatca aagctcaagt tattggaaat
     1861 atgacatcaa agtgttcggg aggaaaatat actaccataa tatggattgg cggtggacct
     1921 tgtcagacaa ttaaatcaaa tccaaacaat gtcactgggc ttcgcgattt cctggagaat
     1981 aaaactgaag ttactttaat tccacgggaa ataatttgat attagaaagt caatatttca
     2041 caataggata tgaaaccgtt aaaaggaatt tttttcttaa ttaaatgagt gactaatacc
     2101 gatgacggta aatcgacctg gttcaatgtg gaaactatta gtaataatat tgatttcggt
     2161 tgctgcaatt atgattggaa tcatggtctt tttctcaggg gagaatggcc tcgaaaatac
     2221 taacattttg ccaacaaatt gctatattat aaatggaaag caaatatgtc ctagcccgtg
     2281 aaactatttt tatgatttgt tggccataag aataatgcag gccaaccatc atgcacttgc
     2341 gggtaagagt cttatatcta gatcccgccg ctggatatgt tactacagta gcagtgcagg
     2401 tattgatggg atatgcccta aaactatccg atcacttttt tagtttagaa atatggctag
     2461 tataaataac atgtta
//
LOCUS       DASPFX010000345         7688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_941323, whole genome shotgun sequence.
ACCESSION   DASPFX010000345 DASPFX010000000
VERSION     DASPFX010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7688
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941323"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1252
                     /gene="cysS"
                     /locus_tag="VD694_07400"
     CDS             <1..1252
                     /gene="cysS"
                     /locus_tag="VD694_07400"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HXW12568.1"
                     /translation="LRRYLRYKGKDLVYVQNFTDVDDKIINRAKSDGTSAEEISSRYI
                     TSYFDDFTKLNVLKADFYPKATDHINEIIDAIKILSEKNYTYTTLNGIYFRVRSFPGY
                     GKLSKKRVDELEQGTRIEIDNLKEDPLDFALWKFSSDFPNWESPWGKGRPGWHIECSV
                     MVSKFLGKEIEIHGGGTDLVFPHHENEIAQSETFTGKKLAKIWMHVGMITINSEKMSK
                     SLQNMVVLKTALKKWGSNVLRIYLISSQYSKPMDYNDEILQESMQKWRQIEHCIYELI
                     TTKNIAEDLYEFEDNYNNFLTEFLTALDSNLNTSLALTIFMKLVSYVNNLSSSEKLTV
                     RMADKALPILDIFMNIIGLKIMIIDNNMKVQIEQMIGERNNLRAEKKFQEADMLRKKI
                     LELFNVELTDHSNYTSWKKKEIIE"
     gene            1377..1916
                     /locus_tag="VD694_07405"
     CDS             1377..1916
                     /locus_tag="VD694_07405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12569.1"
                     /translation="MKKDGLLLSMMISSIVMTSCFVISLETISNGNQVSGESTAPSVP
                     QNTEQSANKTTLQAFTNSLRGLVSKSTELTGKYQLELGKWATKENDNLTMIAITDKYL
                     PQFKDLENEGSNLAVPFGQENIKDSFIKSISSESSSYEHFRNYLISGNITENEISNDE
                     FSLAFQYEQVYAAFLLKNR"
     gene            1991..2692
                     /locus_tag="VD694_07410"
     CDS             1991..2692
                     /locus_tag="VD694_07410"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HXW12570.1"
                     /translation="MNYFKRFSYNFAILTIPRGMLLFVATLILMTDGTGYSIGNFDVL
                     EHNKVVDQNGFIHLFGLMRNISNETQRTITAHADFYDNTGLNIGNASGIISLRSLNIG
                     EISPFEIIFLDKSLNNQFFNYTLSFTSETGLNKADNLIVTSLKSRPDIFGYYYVSGRI
                     SNIGNDTATNVLAIASFFDNNGKMIGLSSAIAEPSNMTSHSTSSFTVVMDDKLHSSKI
                     RNYSLIADSDQYTSR"
     gene            complement(3208..3765)
                     /locus_tag="VD694_07415"
     CDS             complement(3208..3765)
                     /locus_tag="VD694_07415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12571.1"
                     /translation="MLPRIDYIKQGRIRLGLTQRELASLSGISTSMINQIESGRCKPS
                     YDTAKKIFEVLSSQEGKTSLKAGDICSHLVISVQKDEKLEVAIEKMMKNSISQIPVLD
                     VSKIVGIVSEDILARKVLESDDKKNIHQVPILQIMEPPPPIVDISTPAKALIPLVRFA
                     KCVLVSRKGEITGIITISDTLKMAE"
     gene            3891..5168
                     /gene="prf1"
                     /locus_tag="VD694_07420"
     CDS             3891..5168
                     /gene="prf1"
                     /locus_tag="VD694_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HXW12572.1"
                     /translation="MSQDTHKKKWDSVKRYKLTKMLNQLSNITGHGTELVTVYIPPRK
                     PVFEIIGQLRNESGTASNIKSDLTRTHVQDALSKTVEHLKLFKETPENGLAIFCGAIP
                     NNKGIGNEKIELYSVLPPKPIQINLYRCDDHFWTDHIKDMLRDEKVIGLLAIDSQEAG
                     LGILTGDRWEVIDTLTSGVAGKHRQGGQSARRFERLRENELNEFFHRIADHAQKIFID
                     ENKITGLIVGGPGPTKENFLKEEYLDYRLQNNVLATIDISYSGSEGIRELLEKVNEQG
                     IISEYRLLEEKKLLKKFMSQVYSDEGLAVYGIHDVLNMLKSGIVDTLIITDEIPYMHL
                     EIKCNKCGNTEEKYVDRANLINVKQEEVSKSCSKCGSQDREIIEQDIVDQLEELSANI
                     GTKMEVISSKTEEGVQLGSLGNIGAILRFKPSH"
     gene            complement(5185..5631)
                     /locus_tag="VD694_07425"
     CDS             complement(5185..5631)
                     /locus_tag="VD694_07425"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HXW12573.1"
                     /translation="MKAKTKCIFCSIIDDQLGAVRIFENSDFIAFMDKYPINRGHTLV
                     LPKSHHESIFTMSDDEVGKLFSTVSFLSKGIMKALDAKGLNIGQNNGKAANQIVPHVH
                     VHIIPRYSYDSPNGRWPSRNLISDQELETIAQKIRAALTVDGIRAI"
     gene            5723..5911
                     /locus_tag="VD694_07430"
     CDS             5723..5911
                     /locus_tag="VD694_07430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12574.1"
                     /translation="MPETIEINEFNVNFTFTCPKCDYKNEDISAVDIANNNAECGMCE
                     TLFKVEGIDSVKIFALLE"
     gene            5985..7658
                     /gene="ilvD"
                     /locus_tag="VD694_07435"
     CDS             5985..7658
                     /gene="ilvD"
                     /locus_tag="VD694_07435"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HXW12575.1"
                     /translation="MELISRTVVSGPARAPHRAMYKAMGLNDDDLSKPIVGVSSTCNE
                     ATPCNIHLGDLAQHSKSGVRDSGCTPREFTAVSVSDGIAMGHEGMKASLVSREVIADS
                     IEIMMRAHGYDALVGISGCDKSLPGTIMAMARLNLPSIFVYGGTILPGNWNGKQVTVQ
                     DVYEAVGSYEAGKINFQDLKDLENVACPSAGSCGGMYTANTMACISEALGIALPGSAS
                     PPALSERRNQICYDTGKQIFSLLESNIRPKDILTFEAFENAIAIANAIGGSTNAVLHL
                     LAISKEIGVHLDLKDFERIRKATPHLADTRPGGMYVMVDLDKVGGVPVILKSLLKKGL
                     LNGNTITVTGKTMKQNLEGITTNNAEPVVYSCEKPLHHEGTLKILKGTLAPEGAVIKI
                     AGLERTKFEGIAKVFDSEEDAFDAISKQKIRKGDVIVIRYEGPKGGPGMREMLAVTAA
                     LVGQGLGTEVAMITDGRFSGATRGFMIGHVSPEAMVGGPIGLVKKGDKISINLDKGKI
                     DLDISRVELNRRKKSWKPLKSKYKVGVLAKYMLLARSASEGAVTIPQFK"
BASE COUNT         2612 a         1262 c         1524 g         2290 t
ORIGIN      
        1 tctaagaaga tatctgaggt acaaaggaaa ggatttggta tacgtacaaa actttacgga
       61 tgtagacgat aaaataatca atagggctaa atcagatgga acctcagcag aggaaatctc
      121 ttcgaggtat attacgagtt attttgatga ctttactaaa ctaaatgtac tcaaagcaga
      181 tttttatcca aaagcaacag atcacataaa tgaaataatt gacgcaatca aaattttaag
      241 tgaaaaaaat tatacctata ccactctgaa tggaatttat tttagagtaa gatcatttcc
      301 aggttatggt aaactgtcaa aaaaaagagt agatgaactt gaacaaggca ctagaattga
      361 aatcgataac ttaaaggagg atccattgga ctttgccttg tggaaattct cttcggattt
      421 tccaaattgg gaaagtcctt ggggaaaagg aagacccggt tggcatatag agtgttcggt
      481 catggtatca aagtttttgg gaaaagaaat agaaattcat ggtggtggaa cagatcttgt
      541 atttccccat catgaaaatg aaatagcaca atctgaaact ttcaccggca agaaattggc
      601 aaaaatatgg atgcatgttg gtatgatcac gattaattct gaaaagatgt caaaatccct
      661 tcaaaatatg gtagtactaa agaccgcatt gaaaaaatgg ggttcaaacg tacttaggat
      721 ataccttatc tcttctcaat attcaaagcc catggactat aatgatgaaa ttttgcaaga
      781 atcaatgcaa aaatggaggc agatagaaca ctgtatatac gaactaataa caacaaagaa
      841 tatagcagag gatttgtatg aatttgaaga taattacaat aatttcttga ccgaattctt
      901 gactgctttg gacagtaacc tcaatacttc tttagccttg acaatattta tgaaactagt
      961 ttcatatgta aataatttga gttcgtctga aaagttaact gttaggatgg cagataaagc
     1021 gttacctata ttggatattt tcatgaacat cattggtctt aagattatga taattgacaa
     1081 taatatgaaa gtacaaatag aacaaatgat cggagagaga aataatctta gagcggaaaa
     1141 gaaatttcaa gaggcagata tgctaagaaa aaagattctg gaattgttta atgtagaact
     1201 tactgatcac agcaactaca catcatggaa aaaaaaggaa ataattgaat aggaaactag
     1261 tatctaaaac tgtaatgaat gcaatgaatt tgattttctt agacatagat gattcttgca
     1321 aataatctgc catacaggat aaacttttat ttattcagaa gagaaagtag acttaaatga
     1381 aaaaagacgg cctgcttctt agtatgatga tatcgtctat tgttatgaca tcatgttttg
     1441 taatttccct tgagaccatt agcaatggca accaagtttc tggtgaatct actgctccgt
     1501 cagtacctca aaatacagaa cagtcagcga acaaaactac acttcaggct tttaccaatt
     1561 ctctcagggg cttggtatca aagtcaactg aacttactgg caagtatcaa ttggaacttg
     1621 gaaaatgggc aacaaaggaa aacgataatt tgacaatgat tgctataact gacaaatact
     1681 tgccacagtt taaggatctt gaaaatgagg gaagtaatct agcagtacca tttgggcagg
     1741 agaatatcaa agattcgttt attaaatcaa ttagttcaga atcctctagc tatgaacatt
     1801 ttaggaatta tctcatttct ggaaatataa ctgaaaatga aatatccaat gatgagtttt
     1861 cacttgcgtt tcaatacgag caggtatacg cagcatttct tttgaaaaat cgctaacatg
     1921 taaagaggaa atttgatttg aaacactgtt atttctcatt tctacatctt tattcaaagg
     1981 atgttttgtt gtgaattatt ttaaaaggtt ttcttacaat tttgcaatcc ttacaattcc
     2041 tagaggaatg ttactatttg tcgctacttt gattcttatg acggacggta cgggctactc
     2101 cattggaaat tttgatgttc tagaacacaa caaggttgtt gaccaaaatg gcttcattca
     2161 tttatttggt ctaatgagaa acatttcaaa tgaaacacaa agaacaatca cagctcatgc
     2221 cgatttttat gataatactg gactcaacat aggtaacgca agtggtataa tatcactaag
     2281 gtcattaaat atcggagaga tatctccttt tgagataata tttctagata agagtcttaa
     2341 taaccaattc tttaattata ctctcagttt tactagcgag actggattga ataaagcaga
     2401 taatttgata gtaacatctt tgaaatcaag acccgatata tttggatatt actatgtaag
     2461 cggaagaatt tctaatatcg gtaacgatac ggccacaaac gtactagcaa tagcatcttt
     2521 ctttgacaat aatggaaaga tgatcgggct ttcaagcgca attgcagaac ccagcaacat
     2581 gacttcgcat tctacatcca gttttacagt tgttatggat gataaactcc actcttcaaa
     2641 aatcaggaac tattctttga tagcggattc agaccaatat acatccagat aacaaggaca
     2701 ttgagattta tcattgctat taggagagca gccgtagggt ataattctat taggatttga
     2761 cgtgataact ttagaatgat tggactacag aattatatta tgcttgtaca gattgtatga
     2821 tatatggaaa tatttgaacc gtcaatgttc cttgctattt ttccgtattt attcattggt
     2881 agttttccaa ttttcggatt gatattggtc acaaagtgga taatagacga cgtaaagaaa
     2941 agacgaaaat aagttcaaaa tttaaacaaa cccattctcc cttgcgcttg accattgact
     3001 tgtgtctttt ataacacaat tgccgcgaaa atatatatca catgatagaa ttatgttgtg
     3061 tatatgtcaa acgtagcccc acgaaaatgt gcattgtgcg aaactacact accggccgaa
     3121 agtgcaataa atatctgtga aaattgctta aagaatgcag actgctgcgt gggtctagaa
     3181 aacttgagag aataggtcgg tcagtttcta ttccgccatt tttagggtat cgctaatagt
     3241 aatgatacct gtaatttcgc cctttctact tacaagtacg cattttgcaa atcgtactag
     3301 agggataaga gctttggcgg gcgtagatat gtctacaatt ggcggcggtg gttccattat
     3361 ctgtaaaata ggtacctggt ggatattttt cttatcgtcg ctctcaagca cctttctagc
     3421 aagaatgtct tcactcacaa ttcctacaat ttttgataca tctaatacag gaatctggct
     3481 tatggaattt ttcatcattt tttctattgc tacttctagt ttctcatctt tctgaactga
     3541 gataactaaa tggctacaaa tatctcctgc ttttaacgaa gttttgcctt cttgggaact
     3601 gagaacctca aatatttttt tagctgtatc ataacttggt ttacatcgac cggattcaat
     3661 ttgatttatc atagacgtgc tgattccgga tagagatgcc aattcgcgtt gggttaaacc
     3721 tagtcttatt ctcccttgtt taatataatc aatcctcgga agcatttgta gattatttat
     3781 gccgttttca tatttttata gtaatagtac gacatcaaaa aaacaaagta cagacacgaa
     3841 tgtggcttaa ccttatatta tattgacctg aaaatgactt actattagaa atgagtcaag
     3901 acacccacaa gaaaaagtgg gattctgtga agagatacaa attaactaaa atgttaaacc
     3961 agctatcaaa cattactggt catggcacag aattagttac cgtgtatatc cctccacgaa
     4021 aaccagtttt tgagattata ggccaactga gaaatgaatc aggtactgca tccaatatta
     4081 agtcagattt aaccaggact catgttcagg atgctttaag caagactgtt gagcatttaa
     4141 aattatttaa ggaaacacca gaaaatggtc ttgctatttt ctgtggagcc attcccaata
     4201 ataaggggat agggaacgaa aaaatagaac tctattcagt tttgccaccc aaacccattc
     4261 agattaatct ataccgatgc gatgatcatt tttggaccga tcatatcaaa gatatgctca
     4321 gggatgaaaa agtaatagga cttcttgcta ttgatagcca agaagccgga ttaggcatcc
     4381 ttacagggga tagatgggaa gtaattgata cattgacttc aggggtagcg ggaaagcatc
     4441 gtcaaggagg ccaatcagca agaagatttg aaaggttgag ggaaaatgag ttaaatgagt
     4501 tttttcatag aattgcagat cacgcacaaa aaatctttat tgatgaaaac aaaattactg
     4561 gcttaatcgt cggagggcca ggtccaacga aggagaactt tttgaaggaa gaatacctcg
     4621 attatcgact acaaaacaat gtacttgcca caatagacat ctcctattct ggtagtgaag
     4681 gtattagaga attattggaa aaggtaaacg agcaaggcat aatctctgaa tacagattac
     4741 ttgaagaaaa gaaattatta aaaaagttta tgagtcaagt atattccgat gaaggattag
     4801 cagtgtatgg tatacacgac gttctaaaca tgctaaaaag cggcatagta gatactttga
     4861 ttattactga tgagattcca tacatgcatt tggaaatcaa gtgcaataag tgtggaaata
     4921 ctgaagaaaa atacgttgat agagcaaatt tgataaatgt aaaacaggaa gaagtgtcaa
     4981 aatcgtgttc caaatgtgga agccaggata gggaaatcat cgaacaagat attgtggatc
     5041 agcttgaaga attgtcggct aacattggga ctaagatgga agttatttca tcaaaaactg
     5101 aagaaggtgt acagttagga agcctgggaa acataggagc gatactacgt ttcaagccct
     5161 cacattgatg ttcccagtgg gcgcctatat cgcccttatc ccatctactg tcagagctgc
     5221 tcttattttt tgagcaatcg tttctaattc ttgatctgaa atcaaatttc ttgaaggcca
     5281 tctaccattt ggtgaatcat aactgtatct cggaataatg tgcacatgaa catgcggcac
     5341 tatttgattt gcagccttgc cgttattttg tccaatattt agtccctttg cgtcaagtgc
     5401 tttcattatc ccttttgaca agaatgaaac agttgaaaaa agttttccca cttcatcatc
     5461 actcatggta aaaatactct catgatggct ttttggaagt actagagtat gtcctctgtt
     5521 aattggatat ttatccataa aagctatgaa atctgaattt tcaaatatcc tgacagcgcc
     5581 aagttgatca tcaattatag agcaaaatat gcattttgtc tttgccttca ataataatgt
     5641 ccttgtcttc tgctgattta tgtttttgtc gtcattttgt ctacgtgact tttaaatagg
     5701 tcaaattttt ttctaactat aaatgcccga aacgattgag ataaatgaat ttaacgtgaa
     5761 tttcacattc acctgtccta aatgtgatta taaaaatgaa gatatttcag ctgtggatat
     5821 tgccaacaat aatgctgaat gtggaatgtg tgaaactcta ttcaaagtag aaggaataga
     5881 cagcgtgaag atttttgcac tcctagaata attttatcta agatattgat acttatgttg
     5941 gtatcaatgt tatcttaaaa tacgctttaa tcttaatttc agtgatggaa cttatcagta
     6001 gaactgtagt tagtggccca gctagggcac cacacagagc aatgtataaa gcaatgggtc
     6061 tgaatgatga tgatttatca aaacctattg tgggtgtttc gtctacctgc aatgaagcaa
     6121 caccttgtaa catccatttg ggcgatttgg ctcaacattc aaagtcaggt gtaagagatt
     6181 ctggttgtac ccctagagaa tttaccgctg tttctgtatc ggacggtatt gcaatggggc
     6241 atgagggtat gaaggcttct ctggttagcc gtgaagttat tgccgactca attgaaataa
     6301 tgatgcgggc gcacgggtac gacgcattag ttggaatttc tggatgtgat aagagtttac
     6361 ctggaaccat catggcaatg gcaaggctca atcttccatc tatctttgta tatgggggaa
     6421 caatattgcc cggcaattgg aatggaaaac aagtgaccgt ccaggatgtt tatgaagctg
     6481 tgggttcata tgaagcagga aagataaact ttcaagatct aaaagatttg gaaaatgttg
     6541 cctgcccctc tgctggttca tgtggaggca tgtatacggc aaatacaatg gcttgcatta
     6601 gtgaagccct tggtatcgca ttgcctggaa gcgcatctcc cccagcatta agcgagcgaa
     6661 gaaaccaaat atgctatgat actggaaagc aaatttttag cctattggaa agcaacatac
     6721 gccctaaaga tatcctaaca tttgaagcat ttgaaaatgc aatagccatt gccaacgcta
     6781 taggtggttc cacaaatgca gtgctacacc tgcttgcaat atcgaaggaa attggagtac
     6841 atcttgatct aaaagacttt gagagaatta gaaaggcaac gcctcattta gcagacacaa
     6901 gacctggcgg aatgtatgta atggttgatt tagacaaagt aggaggtgtt ccagttattc
     6961 tgaaaagttt acttaaaaaa ggattgttaa atggcaatac aataactgtc acaggaaaaa
     7021 caatgaaaca aaatcttgag ggaataacga caaacaatgc cgaacctgta gtatattcat
     7081 gtgaaaaacc actacaccat gaaggaaccc taaagattct aaaaggaaca ctagcgcctg
     7141 aaggtgctgt gataaaaata gcaggattag agagaactaa atttgaagga attgcaaaag
     7201 tattcgattc agaagaggac gcttttgatg caatttcaaa acagaaaata cggaaaggag
     7261 atgtcatcgt tatcagatac gaaggtccca agggtggtcc tgggatgaga gaaatgttgg
     7321 cagtaacagc tgcattggtt ggacaaggtc ttggaacaga agttgcaatg ataacggacg
     7381 gaagattttc tggtgcgaca agaggattta tgatcggtca tgtttctcct gaagcgatgg
     7441 ttggcggacc aataggcctc gtaaaaaaag gtgataagat cagtattaat cttgacaaag
     7501 ggaaaattga tttagacatt agtcgagttg agctaaatag gcgcaaaaaa tcgtggaagc
     7561 ctttaaagtc aaaatataag gttggggttt tggcaaaata tatgctactt gcaagatctg
     7621 cgtcagaagg cgccgtaact ataccgcaat tcaaataacc ttaatagtgc gttaccaaac
     7681 tgggaata
//
LOCUS       DASPFX010000346         3270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_941674, whole genome shotgun sequence.
ACCESSION   DASPFX010000346 DASPFX010000000
VERSION     DASPFX010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941674"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VD694_07440"
     CDS             <1..546
                     /locus_tag="VD694_07440"
                     /inference="COORDINATES: protein motif:HMM:NF026968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HXW12576.1"
                     /translation="PIIAKPRYGKGSKGIAKIENSMDLKYALSKQNGLIFQEYLPGTE
                     YTIDVLSDLNEEPIIAVPRIRVQTKAGISTVGKIVMDEKISETCKSIARYLKIKGPCC
                     IQMKESYEGTLKLVEVNPRLGGGTIFTALAGANFPAMILDMVMGKQIKVPKISEITIV
                     RYFEEIVVEDQKAMKHHLNLG"
     gene            complement(765..2198)
                     /locus_tag="VD694_07445"
     CDS             complement(765..2198)
                     /locus_tag="VD694_07445"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HXW12577.1"
                     /translation="MTLQEQTSRYSEVEKGKWIARLLMVIAVGCVLAAKVYFTISLVD
                     PFVGIYSFLTSFVLLCILILSYFKYKDPYVSAKNVDVSNGPLISIVVPAKNEEKNIRN
                     CVQSCLNQTYMNKEIIVVNDGSTDKTGEVLDEMRKENRTGNFRILHLSKSVGKKRAVE
                     AASEIARGEIYAFMDSDCDMAFDAVEKAAKIFHNDRKLGALTCHGRVRDAQRGNTIEK
                     FQQVYIDISCRSIKAAESSFKSVTCCSGSLSFYRRVAIQDFIHEWANDKFLGIDFKFC
                     TDRRMTAHILGTRTTLDSSSDKKQHEHLPILQTGEDDIETMKKSLDPDVEFSDRPIKW
                     NVEYSNSIKVNVGVPKTFEALAKQQIRWKKSFIRSLFATGGIYWKRPSFIALLYYIQT
                     AMKLIRPYILFYTIAILPIKGDFTSVLFWIAGVMFTGMIYAVEYRLRNPDDGLWLYRP
                     PFTFITTFVYTWFLIYSALTIRNRSWR"
     gene            complement(2334..>3270)
                     /locus_tag="VD694_07450"
     CDS             complement(2334..>3270)
                     /locus_tag="VD694_07450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12578.1"
                     /translation="SADPEQEICGDGQDNDGNGQIDENCDVSDSGLVSQSNDNNGVQD
                     GSGSDNEKKNSDKFGVTKIYPTKKDGEQWYLNSNPNTDSRFSPQTTMTKNSDGSFKIK
                     STKVRMGVFTSSGFHPEEIKTLNHNKIALAGYMQSPNDWKDVEITGYVKLNSGDNDNF
                     VWYARGARHIGYGSPPGCEGVAYKGDLYFDGSTRFSKEQWHSGGYAFGEFGKNIGPIQ
                     GKWVGLKVIMYNIVQDDKTAVKLELWVDEKNNNDWIKAAERVDDGGWGNTGSECGGKP
                     DQIITWGGPIASFRWDGATDVDIKKFSVREIAPHT"
BASE COUNT         1006 a          681 c          519 g         1064 t
ORIGIN      
        1 ccaataattg caaaaccccg atatggaaaa ggtagtaaag gaattgctaa aattgaaaat
       61 tccatggatt tgaaatacgc tctatcaaaa caaaatggat taattttcca agaatatttg
      121 ccaggaactg aatacacaat agatgttctc tcagacttaa atgaggagcc cataattgcc
      181 gttcctagaa tcagagttca gacaaaagca ggaatctcta cagtgggaaa aatagttatg
      241 gatgaaaaaa tttctgaaac ctgcaaatcg atagcaagat atctaaagat taaaggaccg
      301 tgttgcattc agatgaagga atcttatgaa ggtactctca aattagttga ggtaaatccc
      361 agattgggtg gtggtactat tttcacagca cttgctggtg ccaattttcc agcaatgatc
      421 ttggatatgg ttatgggtaa gcaaattaag gtaccaaaga tatctgaaat tactattgta
      481 agatattttg aagagatagt agtggaagat caaaaggcaa tgaaacacca cttgaattta
      541 ggataacctg aatattctgc aacaagttct tgtcgcaact aatgtccttg acttgtaaca
      601 cttcgccaat cttgcaaggc caatatcctg taaatttcat catgattact gaaaaaccta
      661 taatcattat gaaggtaaca aggattgcac tgagataagc caaaaccgtg aatcacttga
      721 caaatgatat gacgagatta tcaaaaattg gtatcatttt tttattatct ccagctcctg
      781 tttctaatag tcaatgcaga atagattaga aaccatgtat atacaaaagt agtaataaac
      841 gtaaaaggtg gtctatacaa ccataatcca tcatcggggt ttcttaatct gtactctact
      901 gcatatatca tcccagtaaa cattacacct gcaatccaaa ataacactga tgtaaaatcg
      961 cctttaatag gcaaaattgc gatggtatag aacaagatat acggtctgat aagcttcatt
     1021 gcagtttgaa tgtaatacaa aagtgcaata aaggaaggtc ttttccaata aattccgcca
     1081 gttgcaaaaa gacttcgaat gaagctcttc ttccatctta tttgttgttt tgctagcgct
     1141 tcaaatgtct tgggaacacc tacatttacc ttaatgctgt ttgagtattc cacattccat
     1201 tttatgggac gatcagaaaa ttcaacatcg ggatctagag attttttcat tgtttcaata
     1261 tcatcttcac ccgtttgaag gatgggtaaa tgttcatgtt gttttttgtc actggatgaa
     1321 tcaagtgtcg tacgagtacc caatatgtgg gctgtcattc ttcgatcagt acagaattta
     1381 aaatctattc ccaaaaattt gtcatttgcc cattcgtgaa taaaatcttg aattgcaact
     1441 cttctataaa agctgagtga cccggaacaa catgttactg acttaaagga actctcagct
     1501 gccttaatag atctacatga tatatcaatg taaacttgct gaaatttctc aattgtattt
     1561 ccacgttgtg catccctaac ccttccatgg catgttaatg cacctaactt tctatcatta
     1621 tgaaatattt tagccgcctt ctcgacagca tcaaatgcca tatcacagtc actatccatg
     1681 aatgcatata tttcaccacg agcaatttca ctggcagctt caactgccct tttcttacct
     1741 acgctttttg aaagatgcaa aatacgaaaa ttacctgttc tattttcttt acgcatttca
     1801 tcaagaacct cgccagtctt atcagtactt ccatcgttta ctacaataat ttccttattc
     1861 atgtaagttt gattcaaaca ggattgaaca caatttcgaa tgttcttttc ttcatttttt
     1921 gccggtacta ctatacttat caaaggaccg tttgaaacgt caacattttt tgcactcaca
     1981 tatggatctt tatatttgaa atatgaaaga atcagtatac ataagagtac aaaactagtt
     2041 agaaaactgt aaataccgac gaatggatca acaagagaaa tcgtaaaata gactttagct
     2101 gctaaaacac atccaacagc tattaccata agcagccttg caatccattt gcctttttca
     2161 acctctgaat atcgtgaagt ttgttcttgc aaggtcattc acaaacacca atcctagcaa
     2221 accttagtct agatgataat gccattaaat taacttcact agatatagtg tttgtttttc
     2281 ttattaattt tgttattgca acaaacatga taattctgac ataaaggctt aacctaggta
     2341 tgaggcgcaa tttccctaac actaaatttc tttatatcta cgtctgtggc accgtcccac
     2401 ctaaaagatg ctatcggtcc gccccaagtg attatttgat caggttttcc gccgcattca
     2461 cttcctgtat ttccccagcc tccatcgtct actctctctg cagcctttat ccaatcgtta
     2521 ttatttttct cgtctaccca gagctctagt ttcacagctg tcttgtcatc ctggacaata
     2581 ttgtacataa ttaccttaag tcctacccac tttccttgta tgggtccaat atttttccca
     2641 aattctccaa aggcataacc gccagaatgc cactgttcct ttgagaatct ggttgaacca
     2701 tcaaaatata agtcgccttt ataagcaacg ccctcacatc ctggtggcga gccgtaacca
     2761 atatgccttg ctcctcttgc gtaccacaca aaattatcat tatcgccgct gttcagcttc
     2821 acatatcctg taatttctac atccttccag tcgtttggtg attgcatata gccagctaga
     2881 gctattttgt tatggttcaa agtcttgatt tcttcaggat gaaatcccga agatgtaaat
     2941 acgcccattc ttaccttagt tgattttatc ttaaatgaac cgtcagaatt ttttgtcatc
     3001 gtagtctgtg gtgagaatct ggaatcagta ttgggattgg aattaagata ccattgttca
     3061 ccatctttct tcgttggata tattttagtt actccaaatt tgtcagagtt ttttttttca
     3121 ttgtctgatc cactgccatc ctgcacacca ttattatcat ttgattggct gaccagtcca
     3181 ctatcactta catcacagtt ttcatctatc tgtccattgc catcattatc ctgaccatct
     3241 ccacaaatct cctgttcagg atctgctgat
//
LOCUS       DASPFX010000347         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1603445, whole genome shotgun sequence.
ACCESSION   DASPFX010000347 DASPFX010000000
VERSION     DASPFX010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1603445"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VD694_07455"
     CDS             complement(<1..313)
                     /locus_tag="VD694_07455"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HXW12579.1"
                     /translation="MTKCIAFHSYKGGTGKTTLACNSAGALTKRGHKVCLLDLDIYAP
                     SFQIYFQREPPKGINNFLDSDAKVEDVMFDATDIVNNIKALDTDNMNNYQSSPTQERE
                     QT"
     gene            complement(486..2033)
                     /locus_tag="VD694_07460"
     CDS             complement(486..2033)
                     /locus_tag="VD694_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12580.1"
                     /translation="MSGIISYPLQITCYTNERLNIYQIYTYRGNTGLEKLESIVSAAS
                     SMKVAVSVGIAIIFLVIIDLLVTRQILPNYRPVEVIFFILTVVIGYGFGSWILLWYTK
                     RVSKEIRSRSRFINVMHWTVTVVQFSLLGVLLFILFYNNPTNTRFLSHTVFAVSSILA
                     TIIMGVISFKFFSWFKLSDYKNLTGLFYGIAALTLGASIAEDAGTKLLMVQEAEEKTV
                     PGEPIQSSFLYESSDKYDGQIIRKEVNPNATAFLIMPNSNLEYYNLLNSTVLPIAFVF
                     RWIASTTLLRDAYKRIGKLPLAFWIILSLPLILYLVGKAPGFFYGESLAGVDEAYRYF
                     FRILFRAGTIGGNILFGLAFFVIARKMGSSKIRDFLILTAIGDTIVGIALSTSALEPT
                     YGAAAHSLVLLSSYLFSIGLYVCAISLSQDYSLRKSLRKSTVGLIDNIGSAQMELEVR
                     KKVLGLVEVSKDKMEEQTGGLSYSVTENDVREYMQLVMDERKRSVILNTGESRKNLNE
                     QDKEDSK"
BASE COUNT          694 a          448 c          406 g          698 t
ORIGIN      
        1 ttgtttgctc tcgttcttgg gtaggggaag attgataatt attcatgtta tcggtatcta
       61 atgcttttat attgttaaca atatctgtcg catcaaacat aacatcttca acttttgcat
      121 cggaatcaag aaagttgttt atcccctttg gaggttctct ttgaaaatat atctgaaaac
      181 ttggggcata aatatctaaa tcaagcaagc atactttgtg tcctcttttc gtcaaggcgc
      241 ctgcagaatt gcaagccagt gtcgtctttc ctgtgccccc tttataggag tggaaagcga
      301 tacactttgt catgatgcta ggtgtaagta attctccctg ctaaccatat aagacttcac
      361 tttactttac tttgaatatt aaaggactat ggatgcaagc tcatattttg gatgtacgtt
      421 gtagggtaaa aaccaaatac caaataagat tattatatta gggtattgct ccgggattat
      481 ctaccttatt tgctgtcttc cttatcttgt tcgtttaaat ttttccttga ttctccggta
      541 tttagtatca ctgatcgctt tctttcatcc attaccagct gcatatattc tctcacatca
      601 ttctcagtca ccgagtacga aaggccgccg gtctgctctt ccattttatc cttgctaact
      661 tcaactagtc ctaatacctt ctttctgact tccagttcca tttgggcaga gcctatatta
      721 tctatcagac ctaccgtcga ttttctgaga gattttctca gagaataatc ctgtgacagg
      781 gatatcgcac acacataaag tccgatgcta aacaaatatg acgatagcaa cacaagcgaa
      841 tgggccgcgg ccccgtaagt cggttccagg gctgaagtag agagtgctat accaactatg
      901 gtatcaccta ttgcagtaag tataaggaaa tctcttattt ttgaagagcc catttttctt
      961 gctattacaa aaaatgcaag gccaaaaaga atatttccac ctatagttcc agccctaaac
     1021 aaaattctaa agaagtacct gtaggcctca tctactcctg ccaagctttc gccgtaaaaa
     1081 aacccaggtg ccttacctac cagataaaga attaggggaa gggaaaggat tatccagaat
     1141 gctaatggaa gtttaccaat ccttttgtat gcatctcgca aaagagtagt agaagctatc
     1201 catctaaaaa caaatgcaat aggtaacacg gtagaattta gaagattgta gtattccaga
     1261 tttgaatttg gcatgattaa aaatgcagtt gcattcggat ttacttcctt tcttattatc
     1321 tgaccatcat atttgtcaga agattcatac agaaatgatg attgaatagg ttctcctgga
     1381 acagtctttt cctccgcttc ttgtaccatt aataatttag ttccagcgtc ttctgcaatt
     1441 gaggcaccaa gtgttagggc tgcaattccg taaaatagcc cagtgaggtt tttgtaatca
     1501 cttaatttga accaggaaaa gaatttgaag gaaattactc ccatgataat tgttgcaaga
     1561 atcgaactta cggcaaaaac cgtatgagac agaaacctag tgttcgtcgg attattgtaa
     1621 aaaagtataa ataataatac gccaagcaga gaaaattgaa ctactgttac tgtccaatgc
     1681 atcacattta tgaagcgtga tcttgatcta atttccttgc taactctttt tgtataccac
     1741 aaaagaatcc aagatccaaa tccatatcct atgactactg ttaaaataaa aaatatgact
     1801 tcgacaggtc tatagtttgg caagatctga cgagttacta gtagatcgat aattacgaga
     1861 aagattattg caatgcccac tgaaactgcg actttcatag aggacgcagc ggacacaatg
     1921 gattctagct tttcaagccc cgtatttcct cgatacgtat agatttgata tatatttaac
     1981 ctttcattag tatagcaagt tatctgcaaa ggataagaga taatcccaga caaccaataa
     2041 tcacctgagt aaccttggat gcgaaaaatc gcatttctgt cttgatggat ctggcgatag
     2101 tcatcccaat ctctaggact gaaatttttg cttatgagaa tgaaaagggc agggaaaaga
     2161 acgaaaagcc taataatacg cacacaaatg gtattttgtg gcaaaaacca gactctttgc
     2221 tgttatagtc cccatattga tgtccg
//
LOCUS       DASPFX010000348         3192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1088407, whole genome shotgun sequence.
ACCESSION   DASPFX010000348 DASPFX010000000
VERSION     DASPFX010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1088407"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1220)
                     /gene="metG"
                     /locus_tag="VD694_07465"
     CDS             complement(<1..1220)
                     /gene="metG"
                     /locus_tag="VD694_07465"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HXW12581.1"
                     /translation="MLNSKSGPVIITSALPYANGEIHLGHISSTYLPADIFRRFLKLN
                     QVEVYYLCASDDFGTPILIETEKRKVEPAEYVKYWHDKDLQDFNLAGIIFDSFSQTSS
                     ETNRKFVQYVFDILRKNDLVYEKVVVQYYCEKDLKFLPDRYVVGKCPYCDATGQYSDL
                     CEKCGRIPEKILDPKCAICGLPPVKKESNHYFFKLSNFADALEGWLKENKSLQQDVKK
                     YVLNWIVEGLQDWDITRDIPWGINIPIEGNAQKDKVFYGWFDNHLCYISSYIELFGDI
                     NKAKEKWNNSTLYHFIGKDIVYHHYLFLPAIRIGINQEYKLPDFIPTRGHLMLQNSKI
                     SKSRNWYIGLREFVNIFHPDYLRFYIASICSYSQDDINFDWNDFEKKINNELIANIGN
                     FVNRTLTFIKKNFG"
     gene            1352..2566
                     /locus_tag="VD694_07470"
     CDS             1352..2566
                     /locus_tag="VD694_07470"
                     /inference="COORDINATES: protein motif:HMM:NF004005.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HXW12582.1"
                     /translation="MKDMKIDSGRKSWEWASSHMGIMSAIVNEHMNNKPLRGLRLGLS
                     LHITKETSVLVTAAIKLGSKVSLCSANPLSVQEDIVAFLSSLGVKVYAWKDETEREYS
                     DNLERVLENNPHIITDDGANLHVMAHKNKVFGILGGTEETTSGITRLKALEKEGKLQY
                     PVIGVNEARTKHLFDNRYGTGQSTLTGIIRLTNVLIAGKHIVVCGYGHVGRGVAARAR
                     GMGAVVTIVEVDALKALEAYMDGYGVKKIDQVLQNADIIITCTGQKNVIAEKHFKKMK
                     NGTILANAGHFDNEIEVEKLFANSNDNHSIKQYLDCFNMNGRKIFLLAKGRVVNLVGG
                     EGNPPEVMAMSFANQLLSILHIFQNHKRMQKKVFSVPEKIDSSVAKLSLKYLQISIDK
                     LNSDQIEYAKSY"
     gene            2690..2995
                     /locus_tag="VD694_07475"
     CDS             2690..2995
                     /locus_tag="VD694_07475"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HXW12583.1"
                     /translation="MTWMRAASIEEFDKRTGKEVNLSGNRIAIFRSKDKFYAIEALCR
                     HQDGSLAPGKIDGEVVECPLHSWHYNIRTGDLLDYLEGVKLRTYKIDLKGKDIYIDV"
BASE COUNT         1094 a          518 c          585 g          995 t
ORIGIN      
        1 ttaccaaaat ttttctttat aaaagtcagg gttcggttta caaaattacc aatatttgca
       61 attaattcat tgttaatctt tttctcaaaa tcattccaat caaaattaat gtcatcctga
      121 gaatagctac aaattgaagc aatgtagaat cgcagataat caggatgaaa aatatttaca
      181 aattccctca atcctatata ccaatttctg ctctttgaga ttttactatt ttgaagcatt
      241 aggtgaccgc gtgttggtat gaaatctggt aacttgtatt cttgattaat gcctattcta
      301 atcgcaggca agaaaagata atgatgatat acaatatctt ttccaataaa atgatataat
      361 gtggaattgt tccatttttc ctttgcctta tttatatcac caaagagttc tatgtatgaa
      421 gatatgtaac ataaatggtt atcaaaccac ccatagaaaa ctttatcttt ttgtgcatta
      481 ccttcaatag gaatgttaat cccccaagga atatctctcg ttatgtccca atcttgtaaa
      541 ccttctacta tccagttcaa aacgtatttt tttacatctt gttggaggga tttattttcc
      601 ttcagccagc cttcaagagc gtccgcaaaa ttagataatt tgaaaaaata atgattactt
      661 tcttttttaa caggagggag tccacaaata gcacattttg gatccaatat tttttctggt
      721 attcttccac atttctcaca aaggtctgaa tattgacccg tggcatcaca atatggacac
      781 ttaccaacta cataacgatc tggtaaaaat tttaaatcct tttcacaata gtactggaca
      841 accactttct cgtaaactag atcattcttt ctcaaaatat caaacacgta ctgaacaaat
      901 tttctatttg tttcagagct agtctgtgaa aaagagtcaa agattattcc agccaaatta
      961 aaatcttgca agtccttatc atgccagtat ttgacatact ctgccggctc tactttcctc
     1021 ttttcagttt caatcaggat tggagtgcca aaatcgtctg atgcacacag atagtatact
     1081 tctacttgat ttagttttag aaatctccgg aagatatctg ccggtagata agtagacgat
     1141 atatgaccaa gatggatttc tccatttgca tacggtagcg cacttgtaat gataacgggt
     1201 cctgatttgg agttcagcac agcagaatca ttgatgataa cggggaatta aaactatctg
     1261 aataatcaat tagactggaa ttgttaatac atcgtgatgt cccaaagtta caactaatta
     1321 gttataacat atcaatatgg tgtatagcca gatgaaagat atgaaaattg acagtgggag
     1381 aaagtcatgg gaatgggctt cttctcatat gggcattatg agtgctattg taaacgaaca
     1441 tatgaacaat aaacctttgc ggggtttgag attaggactt tcattacaca ttacaaaaga
     1501 aacctcagtc cttgtaacgg ctgcaatcaa acttggatca aaagtttcac tatgctcagc
     1561 aaatccattg tcagtacaag aggatatagt agcatttctc tcttctctgg gagtcaaagt
     1621 atatgcttgg aaagatgaaa ctgaacgtga atattcagac aacttggagc gagtcttgga
     1681 aaataatccc cacataatta cagacgatgg agcaaatctt catgtgatgg cgcacaagaa
     1741 taaggtattt ggcatattgg gtggaacgga ggaaactaca tctggaataa caagactaaa
     1801 agcacttgaa aaagagggaa aattgcaata tccagttatt ggggtaaatg aagctcgtac
     1861 aaagcattta tttgataatc gatatggaac aggtcaaagt acgttaactg gtattattcg
     1921 gttaacaaac gttctgattg cgggtaaaca tattgttgtt tgcggatatg gtcatgtcgg
     1981 tagaggagtt gcagcaagag ctaggggaat gggagctgtt gttactatcg ttgaggtcga
     2041 tgcacttaag gcactagaag catatatgga tggatatggc gtaaaaaaaa tcgatcaagt
     2101 tctacaaaat gcagatatta ttataacatg tactggacag aagaatgtta ttgcagaaaa
     2161 gcatttcaaa aaaatgaaga acggaacaat acttgcaaat gcgggacatt ttgataatga
     2221 aatagaagta gaaaaactat ttgcaaattc aaatgataac cattcaatta agcaatattt
     2281 ggattgtttc aacatgaatg gtagaaaaat tttcctcctc gccaagggca gggttgttaa
     2341 tctagtaggc ggagaaggta atccacctga agtgatggcg atgtcgtttg caaatcagct
     2401 tctctctata ctacacattt ttcagaatca caagcgaatg caaaaaaagg tcttttctgt
     2461 tcctgaaaaa atagattcca gcgtagcaaa gttatcatta aagtatctgc aaataagtat
     2521 tgacaaacta aactctgatc agatagaata tgccaaatcc tactgatatc tgtttaacac
     2581 tccaattttc ctctacaatc attgttattt gtagactact gaaccatcta aattacagat
     2641 aagtaatgga taatatttta taagtgattg aaacttaaaa aagttaatta tgacttggat
     2701 gcgagctgca agtatcgaag aattcgataa aagaactggg aaagaagtaa atcttagtgg
     2761 aaatagaatt gcaatattta gatctaaaga taaattctac gctatagaag cgttgtgtag
     2821 acaccaggac gggtcacttg ctcccgggaa gatagatggc gaggtagttg agtgtccatt
     2881 acattcatgg cattacaaca tacgaacagg tgatctacta gattatcttg aaggagttaa
     2941 attaagaacc tacaagattg atttaaaggg taaggatatt tatatagacg tttgaatcaa
     3001 ttattgccat ctatcattaa taggttataa tacctaattt gaaaatattt aacaaacttt
     3061 ctgatacttt tgaagatatc ggtactacag aagacaatag gattagaata tatgtttgcg
     3121 gtattacagt ttatgatgat tgccatattg gtcatgccag aaccattgtt atttttgatg
     3181 ttctaagaag at
//
LOCUS       DASPFX010000349         2686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_802192, whole genome shotgun sequence.
ACCESSION   DASPFX010000349 DASPFX010000000
VERSION     DASPFX010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_802192"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..885
                     /locus_tag="VD694_07480"
     CDS             <1..885
                     /locus_tag="VD694_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HXW12584.1"
                     /translation="NSSAEAIEAAIKFARKFSGKKGMVAMSGSYHGKSMGALSLTFNP
                     KYRKMFEPLLEKTAFAKFGDIESLRSTIDDDTGFVILEPIQGESGIHVAPDGFLQDVR
                     KLCDEKGILLIFDEIQAGLGRTGRMWASEHWNTIPDIMCIAKGIAGGVPMGATLVKPE
                     ILSVMSKGEHSSTFGGNPLSCAAGTAALTALTQDGLIKNAEKVGKKFHEGLESLKERH
                     QIIREIRGKGLMIGVELKFEVKDILMDGIKNGILLLYSGRNILRLLPPLVISEDDITK
                     VLETLDTLLSKEEKRRDV"
     gene            878..1297
                     /gene="lysM"
                     /locus_tag="VD694_07485"
     CDS             878..1297
                     /gene="lysM"
                     /locus_tag="VD694_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator LysM"
                     /protein_id="HXW12585.1"
                     /translation="MYRDKIDEQIIEFLRNDSRESFVDIGKKLKLSESAVRRRVKNLV
                     DSGTIKRFTIEEGEKNTTSAIVLISVDSTIDTSKVSLKLTKLEGIKTVYEITGQYDIS
                     VIITAPSIGEINSSIDALRKIPGVIDSNTVIILRTVK"
     gene            1415..2581
                     /locus_tag="VD694_07490"
     CDS             1415..2581
                     /locus_tag="VD694_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HXW12586.1"
                     /translation="MNDPNYYADTYNAYDKNPKRIRILDSTLREGEQHPGVSFTNKQR
                     IQIAWMLDYFGVDQIEISPVISKDHEDATKTIIKQGLKADIVSHGRALKEDIDTSLRC
                     DAKWVAAYLGISDIHLKDKLRISRQEALRRAVETVEYAKSHGLKIRFTVEDGSRADPK
                     FLIEVCKKLKEVGVDRISLPDTVGILRPIGMYNFVKKVRNEVDTPLDAHVHNDIGFAL
                     ANAFAACDAGVDQIHTTIDGIGERTGIPSLAEVAVSLTYLYKSPNDFRLDMLQDLSRL
                     IEEYTSIKPYDSKPIVGSSAYKHKAGTHLAAILRNPAAYEPIPPRAVGNRRRIVFGEL
                     AGKTGAAYLMSLLGLEKDDKSAKAVASGLKTLRMGDLIEIPLEDRLEKKIINDE"
BASE COUNT          967 a          379 c          575 g          765 t
ORIGIN      
        1 aacagtagtg cggaagcaat tgaagctgca ataaagtttg cgcgaaagtt ttctggaaaa
       61 aaaggaatgg ttgcgatgag tggttcatat catggcaagt caatgggtgc gctttcttta
      121 acatttaatc cgaaatatcg aaagatgttt gagcctttac ttgaaaaaac agcttttgca
      181 aaatttggcg acattgaatc attgcgttca acaattgatg acgatactgg atttgtaata
      241 ttagaaccaa ttcaaggaga gagtggaata catgttgcgc ctgatggatt tttacaagat
      301 gttagaaaac tttgtgatga aaaaggaatt cttctgattt ttgacgaaat tcaagctggg
      361 ttaggtagaa ctggccgaat gtgggcttca gaacactgga atacaattcc ggatataatg
      421 tgtattgcaa aaggaattgc gggaggggtt ccaatgggag ctacacttgt taaaccggaa
      481 atactttcag taatgagtaa aggtgagcat tcatcaacgt ttggtggcaa tccactttct
      541 tgtgcagctg gaactgctgc acttactgca cttacacaag acggtttaat taaaaatgca
      601 gaaaaggttg gaaagaaatt tcacgaggga ttagaatctc taaaagaacg acatcagatt
      661 atcagagaga taagaggaaa agggttaatg attggcgtag agttaaaatt tgaagttaag
      721 gacattctaa tggatggaat aaaaaatggc atattattac tatattcagg aaggaatatt
      781 ttgagattat taccaccatt ggtaatatca gaagatgata taacgaaagt tttagaaacc
      841 ttagatactc ttctaagtaa agaggaaaaa agaagagatg tatagggata aaattgatga
      901 gcagattata gagttcttac gaaatgattc aagagaatct tttgtagaca ttggaaaaaa
      961 gctaaaactt tcagaatcag ctgttcgtcg tagagtaaaa aatcttgttg atagtggaac
     1021 gattaaaaga tttacaatcg aggaaggtga aaaaaatact actagtgcaa ttgtgttgat
     1081 ttcagttgat tctaccatag acacatcaaa agtttcttta aagcttacaa agcttgaagg
     1141 aataaaaaca gtttatgaaa ttacaggaca gtacgacatt agtgtaataa ttacagctcc
     1201 aagtattgga gagataaaca gtagtatcga tgctttaaga aaaattcctg gcgtaattga
     1261 ttctaatact gtaataattc ttcgaacagt aaagtaaaaa cgagtttcgg atcgaaaatt
     1321 agttttatga ctatttttga cagaaaaaca cgatatttcg ccgaagttag tacgaatatg
     1381 tttatattct attgatttat catcgaaatc tgcaatgaac gatccgaatt actatgcaga
     1441 cacatacaat gcatatgaca aaaatccaaa gagaatacgg atactagata gtactctgcg
     1501 agaaggagaa caacatcctg gtgtgtcttt tacaaataaa caaagaattc agatagcttg
     1561 gatgctagat tattttggag ttgatcagat agagatttct ccagttatct caaaagatca
     1621 tgaggatgca actaaaacaa tcattaaaca aggactaaag gcggacattg tttcacatgg
     1681 acgtgcatta aaagaagaca ttgatacttc attaagatgt gatgcaaaat gggttgcagc
     1741 atatcttgga atatccgata ttcatctaaa agataaattg agaatttcaa gacaagaagc
     1801 actaagaaga gcagtagaaa ctgttgaata tgcaaaatca catggcttaa aaattagatt
     1861 tactgtagag gatggtagta gagcagatcc taaatttttg attgaagtct gtaaaaaact
     1921 taaggaggtt ggagttgata gaattagtct tcctgataca gttggcatat tgagacctat
     1981 tggaatgtat aatttcgtaa aaaaagtccg taatgaggtt gatacacctc ttgatgcgca
     2041 cgtgcataat gatatcggat ttgcgttagc aaatgcattt gctgcatgtg atgctggagt
     2101 tgatcaaatt catactacga tagatggaat tggtgaacga actggaattc cttcacttgc
     2161 ggaagttgct gtttctttga catatttgta taaatcacca aatgatttta gattagacat
     2221 gttgcaggat ctttcaagat taattgaaga atatacgtcg ataaaaccat atgattcaaa
     2281 accaattgtc ggttcctcag cttacaaaca taaagcggga acacatcttg cagcaattct
     2341 aagaaatcct gcagcttacg aacctatacc gccaagagca gttggtaata gacgcagaat
     2401 tgtatttgga gaattagcag gaaaaacagg cgctgcttat ctaatgtctc ttcttggcct
     2461 ggaaaaggat gataaaagtg caaaggcggt tgcttctggt ctaaaaactc tcaggatggg
     2521 ggatcttatt gagattccat tagaagacag acttgaaaaa aagataatta atgacgaata
     2581 ggggattaaa tgagaacgac atgacaaaat gtgctgaatg tgacgcaaat atatcaattc
     2641 caagtgacgc cttggaagga gaaatcatta cttgcccaga atgtgg
//
LOCUS       DASPFX010000350         2505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_803148, whole genome shotgun sequence.
ACCESSION   DASPFX010000350 DASPFX010000000
VERSION     DASPFX010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_803148"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VD694_07495"
     CDS             <1..969
                     /locus_tag="VD694_07495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12587.1"
                     /translation="LDPNKQPDSDFIFISHAHTDHLYKSVRENGNKIITSRITHKIAK
                     HRGYKYGDAYEEHDFKLLDSGHILGSNGLLIEGELYYTGDISIQKRAFMNPAVIPQAK
                     TLIIESTFGHHDYVFPKFESTIHKANLIISEMYHRGIPVILLGYTLGKAQVLTNVFRH
                     WKPLIIHDSIHEMNRIYSEFGIDMDYYVTFSEAEKNDMLSSHSPWLMIAPIESCKNGF
                     LNYIKTKYGALSIGFSGWSVKPYYKFAMGLDHCLPLSDHCDYNDLIGVVKKCNPEKVY
                     TFHGFADEFARDLRLIGFDADPLVYSRGKGRKTSLKLDTFFGKSRT"
     gene            complement(1020..2102)
                     /locus_tag="VD694_07500"
     CDS             complement(1020..2102)
                     /locus_tag="VD694_07500"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HXW12588.1"
                     /translation="MRTKFGFTQGLNIARLGLDEIQIMTACQIADRLDFDSIWSMDHS
                     NVPQWKNAVVNDAWLLLAAIGAVTKNVELGTCVTDAIRRHPSTIALSSITLDRLTNGR
                     AILGIGAGEAQNVVDFGIEFKKPVTKFREQLEVIEALFDSDPDNRVNYDGEYYKLINA
                     CLQAKSIRKPRPPVYIAAGAPKTLELCAIYGDGWIPIGYTPALFKHHADVIKDHAKTN
                     GRDISNFQFANDVDVYFTEDGEEAWNKMKNAVKVSLYKPELLKVHNIQQDSEFDFRRY
                     FTEYAMNKPELMEQMKRAAMQIPDDVARSAIGVGKPDDVIEMLDRFIEAGTNHFIIRF
                     WGDGYFKNIELFGKKVIPYFREQEKK"
     gene            2253..2501
                     /locus_tag="VD694_07505"
     CDS             2253..2501
                     /locus_tag="VD694_07505"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HXW12589.1"
                     /translation="MNFRDSKNTTHDDNKKISVRLLVNGKVQGVYFRFNMQQVAMKNS
                     VFGWVRNLSDGRVEALLEGNEDDVEKTIEWSKSGMERT"
BASE COUNT          780 a          468 c          447 g          810 t
ORIGIN      
        1 cttgatccga ataaacaacc tgattctgat ttcattttca tttcccacgc acatactgat
       61 catctataca agagcgttag agagaacggt aataagatta tcacctcaag aataacccac
      121 aagatcgcaa aacatcgggg atacaaatat ggtgacgcat acgaagagca cgatttcaaa
      181 ttgttggatt caggacatat tcttggatca aatggacttc taattgaagg tgagttgtat
      241 tacacaggtg acatttcaat tcaaaaaaga gcgtttatga atcctgctgt tatcccccag
      301 gcaaaaacgc tcataataga gtctactttt ggacatcatg attatgtttt tccaaaattt
      361 gaaagtacaa tacataaggc caatctaata atttctgaaa tgtatcatcg aggtatacca
      421 gtcatcctgc tgggatatac tttaggaaag gcacaagttc taacaaatgt atttagacat
      481 tggaaaccac taataattca cgattcgata catgaaatga acaggatata ttcagaattt
      541 ggcatcgata tggattacta tgttactttc tctgaggcag aaaaaaacga catgttgtca
      601 tctcatagtc catggttaat gatcgctcct atcgaatcat gcaaaaacgg atttctaaat
      661 tatatcaaga caaaatatgg tgcactttcg attgggttta gtggatggtc tgtaaaacca
      721 tattacaaat ttgcaatggg attagatcat tgtttacctc tgagcgacca ttgtgattac
      781 aatgatttga ttggagtagt aaagaaatgc aatcctgaaa aggtatacac atttcatgga
      841 tttgccgatg aatttgcacg cgatctacga ttgattggtt ttgatgcaga tcctcttgtt
      901 tactctagag gtaaaggccg taaaacatca ctgaaacttg acactttttt tggcaagtca
      961 agaacttaaa gattaatgat cgatctttca attgtaacat taagatctac tattatgaat
     1021 cacttttttt cctgttctct gaaatatggt attacttttt taccaaagag ctctatgttt
     1081 ttgaaatagc catctcccca aaatctaatg ataaagtgat tcgttcctgc ttcgataaac
     1141 ctatctaaca tttcaattac atcgtctggc tttcctactc caattgcgct cctcgccaca
     1201 tcatcaggta tttgcattgc agcccgtttc atttgttcca tcaattcggg cttgttcatt
     1261 gcatattctg taaagtacct cctaaagtca aactctgaat cttgttgaat attgtgcacc
     1321 tttaataatt caggtttgta taaactaacc ttaactgcat ttttcatctt attccacgct
     1381 tcctccccat cctcggtaaa gtaaacatct acatcattag cgaattgaaa attagagata
     1441 tccctgccat ttgtctttgc gtgatccttt atgacgtctg catgatgttt gaacaacgcg
     1501 ggtgtatagc caattggtat ccaaccatct ccgtaaatag cacatagctc aagggtcttt
     1561 ggcgctcctg cagcgatata gacgggtggc cttggttttc tgatactttt ggcctgcaaa
     1621 caagcattaa ttagtttata atattcacca tcataattta ctctattatc cggatcagaa
     1681 tcaaagagtg cttcaatgac ttccaattgt tctctgaatt tagttacagg ttttttgaat
     1741 tctattccaa agtccaccac attttgagct tctcccgcac caatccccaa tattgcgcgt
     1801 ccattagtga gcctatcaag tgtaatggat gataatgcga tagttgaagg atgtcttcta
     1861 atagcatctg tcacacaggt tcctaattca acattctttg tgactgcacc aatagctgct
     1921 agcaataacc aagcatcatt tacaactgcg tttttccact gaggtacgtt tgaatgatcc
     1981 attgaccata ttgaatcaaa atcaagcctg tctgcaattt gacatgccgt cattatttgg
     2041 atttcatcca gacctagtct ggcaatattt aatccttggg taaagccaaa tttggttctc
     2101 attttataat ggaattatgc attcctatga gtatataagg tttggatgat ttagattagg
     2161 ataactactc ttcaaatata atagaagatt tgaatctgct gacaaaacct ttgtctcaat
     2221 atatataaaa tagcattatg tagaagaata atgtgaattt cagagattct aaaaacacaa
     2281 cgcatgatga taacaagaag atttctgttc gattgttggt taatggaaaa gttcagggtg
     2341 tgtatttccg gtttaacatg caacaagttg caatgaaaaa ttcagttttt gggtgggtgc
     2401 gtaatttatc tgacggtcgg gtagaagccc tacttgaagg aaatgaagat gatgtggaaa
     2461 agacaataga atggagtaaa agtggaatgg aacgaacttg aaacc
//
LOCUS       DASPFX010000351         4384 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_244552, whole genome shotgun sequence.
ACCESSION   DASPFX010000351 DASPFX010000000
VERSION     DASPFX010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4384
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244552"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..1002)
                     /locus_tag="VD694_07510"
     CDS             complement(172..1002)
                     /locus_tag="VD694_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12590.1"
                     /translation="MPFQIDELRLAYSKYNEFRKNCKFSFHERFIFPYICGTYFGYRK
                     VDVLRVVAIAKSISTKPKYLDVGCGYGDFLEKIREFIPDAIGIEKDGGIFYEFNRIKP
                     DHIQIKDVSLDLNEKYDVIFVGWMDPGVDFRKSIAKSTDCIITNFDTGGQCGINGGCE
                     YEEFGFRRIVWWRTPSWIDVNYQIMDKYYTPMTNEIKKQLVELRSAHTMWYVYAKEDL
                     SHILCEALNKWLKKESQLPLNIEKYDFEYVLDECGFHYNEKLPLLLHPKNALWEVNFE
                     "
     gene            1149..1367
                     /locus_tag="VD694_07515"
     CDS             1149..1367
                     /locus_tag="VD694_07515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12591.1"
                     /translation="MARKFEEWWNSVPADLKTKARKGDEGNKPLLNQVNYVLLHLHLA
                     GKHDAKPSHDELKDWLHSGQVDVLRMNK"
     gene            1479..1772
                     /locus_tag="VD694_07520"
     CDS             1479..1772
                     /locus_tag="VD694_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HXW12592.1"
                     /translation="MPIAILPDVDEQRCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACVGVCPTHAIFWMRPMEYTAGQPVPLHKNGVFDKGWEEG"
     gene            complement(1956..2570)
                     /gene="leuD"
                     /locus_tag="VD694_07525"
     CDS             complement(1956..2570)
                     /gene="leuD"
                     /locus_tag="VD694_07525"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HXW12593.1"
                     /translation="MEPFEDIKSRLIPFDMTSVDTDQIIPKQFLKLIQKTGYGGFLFY
                     DWRFDHAGNPKKEFVLNEPKYSKRQVLLTRDNFGCGSSREHAVWALYDYGIRAVIASS
                     FADIFYNNCFKKGLLPICLTQDKIEYLFDLVNNDDPVVDISLANQTISISEKTICFDI
                     DLTRKKMLLEGIDEIGYTLSFEDRILDYEKAYKIADYNKYLIRS"
     gene            complement(2584..4023)
                     /gene="leuC"
                     /locus_tag="VD694_07530"
     CDS             complement(2584..4023)
                     /gene="leuC"
                     /locus_tag="VD694_07530"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HXW12594.1"
                     /translation="MQKTLFDKIWDSHLVMNDNQNENADNSTGPSLIYIDRHLVHEVT
                     SPQAFASLKQSGRKVRCPNLTIATTDHNVSTESRSLPIVDEVSKTQLETLSKNCKEFG
                     ITIYDMTSPDQGIVHVIGPELGFTLPGTTIVCGDSHTSTHGAFGALAFGIGTSEVEHV
                     LATQCLWMYKPRSFLINIEGNLSKRHAITSKDIILNIIRKIGTDGGTGMVFEYRGDVI
                     SGLSMEQRMTICNMSIEGGARAGLIAPDETTFSYLRGRRYAPNESELDKLIEFWKSNL
                     KSDENVGFDRVETTNVDKLAPQISWGTNPSMVVDITDSVPSPEQYAKSDENKRKLAIR
                     ALEYMDLQPGIPMTDVHVDRVFIGSCTNSRLEDLMEASLVIKGRKVSTNLRAMVVPGS
                     QKVKLQAEKIGLDKIFKDAGFEWRESGCSMCLGMNPDILLPGERCASTSNRNFEGRQG
                     SGGRTHLVSPIMAAACAIEGHFVDVRNWF"
     gene            4144..>4384
                     /locus_tag="VD694_07535"
     CDS             4144..>4384
                     /locus_tag="VD694_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HXW12595.1"
                     /translation="MFPYDNKNFDKNYEEYIKNHIKKGTTTCALTCKDGVVLAADTRA
                     SAGYFIVDRNVMKIQKIDEHLGMTIAGGVADAQNLV"
BASE COUNT         1326 a          862 c          727 g         1469 t
ORIGIN      
        1 gcgactactc gcaaaacatc aacttttcta tagccaaaat acgtaccgca aatataggga
       61 aagatgaaac gttcgtgtag aggagaaacg gaaaagtccc tgaatttctt tagctcattg
      121 taagcttcaa ataatttccg agtactgtaa gtctttgtag tgtgtgtcat tctattcaaa
      181 gtttacctcc cataatgcat tttttggatg gagtaataaa ggaagttttt cattataatg
      241 gaaaccacat tcatccagta catattcaaa atcatatttt tcaatattta gaggaagctg
      301 gctttctttt tttaaccatt tatttaaggc ctcacacaag atatgagaca agtcctcttt
      361 tgcataaaca taccacatcg tatgcgcaga gcgcagttca actaattgtt tctttatctc
      421 gtttgtcatc ggagtgtaat atttatccat gatctgatag tttacatcta tccacgaagg
      481 agtcctccac catactattc tgcgaaatcc aaactcttca tattcgcatc ctccatttat
      541 cccacattga cctcctgtgt caaaattagt aataatacaa tctgtagact ttgctataga
      601 ttttctaaag tccactccag gatccatcca tcccacaaat attacatcat atttttcgtt
      661 tagatctaat gacacatctt taatttggat atggtcaggc tttatcctgt taaattcata
      721 gaaaatgcca ccgtcttttt ctataccaat agcatcaggt atgaattctc gaattttttc
      781 caaaaaatct ccataaccac atcctacatc caagtacttt ggtttcgtag aaattgattt
      841 agctattgcg actactcgca aaacatcaac ttttctatag ccaaaatacg taccgcaaat
      901 ataaggaaag atgaaacgtt cgtgaaatga aaatttgcaa ttttttctaa attcattgta
      961 ttttgagtat gctaaacgaa gttcatcaat ttgaaatggc atacattaat agattacaaa
     1021 ttttactcaa atttaaccta ttattttgat ttttaggcaa gaacatgttt tgatgctttt
     1081 tgttttagct aaatatttac gataaaattg tccaaaaggc ttataaagtt ctactctgac
     1141 ttttcattat ggctcgtaag tttgaagaat ggtggaattc tgttcccgct gatttaaaga
     1201 caaaagctcg aaaaggtgat gaaggaaaca aaccattgtt aaaccaggtt aactatgttt
     1261 tacttcatct tcatctggca ggaaaacatg atgcaaaacc aagtcatgat gaattgaagg
     1321 actggcttca cagcggtcaa gttgacgtat taagaatgaa caaatagtca actctccatt
     1381 ttctttttta tcatttttat tttctatata acactgtttt gaattaagca tagtgtttaa
     1441 atagtttcaa acatatgctc ctttagtgat ttagtagatt gcctattgca atacttccag
     1501 atgttgatga acaaagatgt atcggctgtg ctctatgtgt cgaaatttgt actgctcttg
     1561 gtccagatgt attgagggta aaaccagttg agggatggaa gagaggtaaa gcttttgtgt
     1621 tctatcctga aagatgcatt tcagatggtg catgtgtagg cgtttgccca actcatgcta
     1681 tattctggat gagaccaatg gaatatacag caggacaacc agttccttta cacaagaacg
     1741 gtgtattcga caaaggttgg gaagaaggct aagtaatttt tcacatactt tcatttttta
     1801 attttatttt tgcaatttac attttgactt aattattata gcttattacg gtacaccatt
     1861 aaactatact ttaagctgtc tgacgctctt tgattgctaa cgttcttcgg caaaagcttt
     1921 agctttttga aatgaccaaa aaaatgtttg gaaattcaac tcctaatcaa atacttgttg
     1981 taatcagcaa ttttgtaagc tttttcataa tccagtatcc gatcttcaaa gcttagtgta
     2041 tagccaattt catcaatacc ttccaaaagc attttcttcc gggtcaaatc tatatcaaaa
     2101 caaatagttt tttcagagat agaaatcgtt tgattggcta gactaatgtc cacaactgga
     2161 tcatcattat ttaccaaatc aaaaagatat tctattttat cttgagtcaa gcatattgga
     2221 agtaatcctt ttttgaaaca attattgtaa aatatgtctg caaaggagga tgcaattaca
     2281 gccctaatcc catagtcata taatgcccac accgcgtgtt ctctagaact cccacatcca
     2341 aagttatctc tagtcaataa cacctgtctt ttgctatatt ttggctcgtt gaggacaaat
     2401 tccttctttg gattaccggc atgatcaaaa cgccagtcat aaaaaagaaa tccgccatat
     2461 cctgttttct gaatcagttt gagaaattgt tttggaataa tctgatctgt atctacactt
     2521 gtcatatcaa acggaattag tctactttta atgtcttcaa aaggctccat tgatatcact
     2581 agtttagaac caattcctca catcaacaaa atgaccctct atagcacatg ctgcagccat
     2641 tattggactt acgaggtgag ttcttcctcc agaaccctgt ctaccttcaa aatttctgtt
     2701 agatgtgctt gcacaacgtt ctcctggtaa taatatatcc ggattcattc caagacacat
     2761 actacagcct gattctctcc attcaaatcc agcatctttg aaaatcttgt ccaaaccaat
     2821 cttctcagct tgtaatttga ccttttgaga tcctggaact accatagccc ttaagtttgt
     2881 ggataccttc ctacccttaa tgaccaatga cgcttccata agatcttcta atcgtgaatt
     2941 tgtacatgag cctatgaaca ctctatctac atgaacatca gtcattggta tccccggttg
     3001 tagatccatg tattctagag ctctgatagc tagtttcctc ttattttcgt cacttttcgc
     3061 atattgttca ggagagggaa cggaatcggt aatgtcgact accatggatg ggttagtacc
     3121 ccagctaatc tgtggcgcaa gcttgtcgac gttagtggtt tcaactctat caaatcctac
     3181 attttcatca cttttcaaat tacttttcca aaattctatc agtttatcaa gttctgattc
     3241 atttggcgca tatcttcttc cacgcaggta gctaaaggta gtctcgtcag gggcaatcaa
     3301 acctgctctc gctccacctt caatagacat attacatatg gtcattcgct gttccattga
     3361 taatcctgaa atcacgtccc cgcggtattc gaataccatt ccagttccgc catcagttcc
     3421 tatcttacgg ataatgttga gtataatgtc tttagaagtg atagcatgtc ttttacttag
     3481 attcccctca atattgatta gaaatgatct tggtttatac atccatagac actgagtagc
     3541 aagtacatgt tcaacttcac ttgttcctat tccaaaagcc aaggcgccga atgcaccatg
     3601 tgtggatgta tgactatcac cgcaaactat agtggtgccc ggcaatgtga atccaagctc
     3661 tggtccaatg acatggacta ttccctgatc cggacttgtc atgtcataga tagttatccc
     3721 aaattccttg cagtttttac ttaacgtttc aagttgagtc ttagacacct catcaacaat
     3781 cggcagggac ctactttcag ttgaaacatt atggtctgta gttgctattg ttaaattagg
     3841 gcacctaact ttcctgccac tctgctttaa actggcaaat gcttggggag atgtaacttc
     3901 atgtaccaaa tgcctgtcaa tatatatcaa cgaagggccg gtcgaattat cagcattttc
     3961 attctgatta tcgttcataa ctagatggct atcccagatc ttgtcaaaga gggttttttg
     4021 cattattatc tatcgttagt taaatcggaa tataatcata ttactatggc catcaaccat
     4081 aatttgaaag ccatttcaat cggtgacaat gcttaaattt agtattcata gaaattaatt
     4141 tcaatgtttc catatgacaa taagaacttc gacaagaatt acgaagagta tattaagaat
     4201 catataaaga aagggactac tacatgtgca ttaacatgta aagatggcgt tgttttggct
     4261 gcagatacaa gggctagcgc tggttacttt attgtagata gaaatgttat gaagattcaa
     4321 aaaatagatg agcatttggg catgacaatt gctggaggtg tagctgatgc tcaaaatttg
     4381 gttg
//
LOCUS       DASPFX010000352         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1502801, whole genome shotgun sequence.
ACCESSION   DASPFX010000352 DASPFX010000000
VERSION     DASPFX010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1502801"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..762
                     /locus_tag="VD694_07540"
     CDS             <1..762
                     /locus_tag="VD694_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HXW12596.1"
                     /translation="LIVPFIDRYKKFSWKDRPIITAVGITSLAQIIVTTYWGFYIDPD
                     RTKSLLERLVIDPVFLYLVMILLVPLSFGFTYMMIKLAKNAEANAKVQPKKPTTKSSI
                     NLTEKWIYGIFIALLAFQVYLNIAAYYAVLNGMKNYSLFIIGIMMLVFAGMFHIFRHG
                     KSMQKAPPPKPTLPPMPAKAKPPSLTKTGTTEVPEITAGTRELESSVAKEKTVAPSAR
                     GGSSPSSPSSSVQSSNKTESADTHSEQKIIADEKK"
     gene            889..1350
                     /locus_tag="VD694_07545"
     CDS             889..1350
                     /locus_tag="VD694_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HXW12597.1"
                     /translation="MNNHAAGISIIAFIVTVMASMGYYQFVYTKEVNAKPQLPEEILN
                     PPEPTTVSILEGSAQPSQQKNFDPKEVRGTLGISNKIIWTNIDTTAHTVTSDGQYNDQ
                     ISGPFNSLESAGLLLPQQTFEFTFTKDGEFPYHCEPHPWMTGKVTIVKSFA"
     gene            complement(1445..1804)
                     /locus_tag="VD694_07550"
     CDS             complement(1445..1804)
                     /locus_tag="VD694_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12598.1"
                     /translation="MGENDITISFDKDEVKTNEELNGTIKIRYMGRFDSIVINSQIEN
                     TSEIFNFVKLDGKKINYSYARMPILRQDIKNKNEINFTAITKHVPQGSSKVKFRATII
                     QEHKEIADDVAFLKIVP"
     gene            complement(1986..2324)
                     /locus_tag="VD694_07555"
     CDS             complement(1986..2324)
                     /locus_tag="VD694_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12599.1"
                     /translation="MLNTKNVLMLAVLSAGLLTVLTGSAVSQVQPAFADKDEDKCEDN
                     GDFNCNEENQKVHQENNCKIVNEIKNDDGSDDNTNGGNGNGDITCWNFAQNPEGGDAI
                     VDEDVLDPFS"
BASE COUNT          790 a          493 c          428 g          853 t
ORIGIN      
        1 cttattgtac cgttcatcga tagatacaag aaattttcat ggaaagatag acccattatt
       61 acagcagtag gaattacaag tttagctcaa atcatagtaa caacatattg gggattctac
      121 atagatcctg atagaactaa atcattgcta gaaagacttg ttattgaccc ggtgtttcta
      181 tatcttgtca tgatattgct agtaccatta tcatttgggt tcacatatat gatgataaaa
      241 ctggcaaaga atgcggaagc taatgcaaaa gttcagccta agaaaccgac aaccaaaagc
      301 tcgataaatt tgacggagaa atggatatat ggtatcttta ttgcactctt ggctttccaa
      361 gtctatctga atatcgctgc atattacgca gttctaaatg gaatgaagaa ctactctctg
      421 tttatcattg gtataatgat gcttgtgttt gcaggcatgt ttcatatctt tagacatgga
      481 aaatctatgc aaaaagcgcc gccgccaaag ccaacccttc ctccaatgcc tgccaaagca
      541 aaacctcctt cattgacaaa aacagggaca acggaagttc ctgaaattac cgctggtact
      601 agggagcttg agagttctgt cgctaaagaa aagacagtgg caccatctgc aaggggcggc
      661 tcctcacctt cctcaccatc ttcttcggtt caatcttcaa ataaaactga atcagctgat
      721 acccatagtg aacaaaaaat aattgctgat gaaaaaaaat aatatgtcaa tgactttgaa
      781 tatgcaattg agtaataatg ttgataatcc aaatttcaat gaacacgatt tccaaatgat
      841 gacgaatcat aatattatat atattcgtca aattaaagca gatgacaaat gaataatcac
      901 gctgcaggaa ttagtatcat tgcttttatt gttactgtga tggcaagtat gggttattat
      961 caatttgttt ataccaagga agtaaatgcc aaaccacaat taccagagga gatccttaat
     1021 ccaccagaac ccacaacagt atctatattg gaaggatcag ctcagccttc acagcagaag
     1081 aactttgacc ccaaagaagt aaggggaaca ttgggcatta gcaataaaat aatttggaca
     1141 aacatagaca ctacagcgca tactgttact agtgatggac agtataatga tcaaataagc
     1201 ggccccttta attccttaga aagtgcgggt ctactactcc cacaacaaac ttttgaattc
     1261 acctttacta aggatggaga atttccttat cattgcgagc cgcatccgtg gatgactggt
     1321 aaggtaacta ttgtgaaaag cttcgcctaa ctttttacga ttaatttcca acactcttta
     1381 ttgtcttgtt cttgatcaag atcaaaaata tggttgttca actctctaaa tattatacat
     1441 tcctttatgg tactattttc aggaatgcta catcatccgc aatctcctta tgctcttgaa
     1501 ttatggttgc tctaaatttg acttttgagc ttccctgagg aacatgtttt gtgattgctg
     1561 taaaattgat ttcgttttta tttttaatgt cctgtcttag tatcggcatt cttgcatatg
     1621 agtaattaat ttttttacca tcaagtttta cgaaattaaa tatttcgctc gtattttcta
     1681 tctgtgaatt tatcactatg ctatcaaatc gccccatgta tctaattttt atggttccat
     1741 tgagttcttc attcgttttg acttcatctt tgtcaaaact aatggtaatg tcattttctc
     1801 ccattattgt agattagagg ctgttcaatt ttaattatta tccagattta catcttatct
     1861 agatgctggt actagaacgg tcaaacctca tttattagat gtatatcttc atacttgtta
     1921 aataaagaaa aaagtattgg gtacttaccg ttacctgttg cccacaattg ctttctttaa
     1981 gctatttacg agaatggatc taatacatcc tcatcaacta ttgcgtctcc accttcggga
     2041 ttttgagcga agttccagca ggttatatcc ccattgccat taccaccatt tgtattgtca
     2101 tcactgccat catcattttt aatctcattt actatcttgc agttattttc ctggtgtacc
     2161 ttctggtttt cttcattgca attaaagtcg ccattgtctt cacatttatc ttcatctttg
     2221 tcggcaaatg ctggttgtac ttgtgacacc gctgatcctg tcaacactgt taacaatcca
     2281 gcggacagta ctgcaagcat caagacgttt ttcgtattca acatttgtta tcgtgaattg
     2341 atactaaact tagtataagt atattgagta agaacaagtg gtaaaaaaag aagagaatat
     2401 tttccactac attaaatccg aatttatgaa tagaatatta ctccccacgt gctttgcgcg
     2461 cttgtatgac agatatgtta atccttgtta ttgttatatt gcggttactt gatacagaaa
     2521 cttggagcaa tagaaaacca tgtcgcctca tttttgatcg tatt
//
LOCUS       DASPFX010000353         4584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_907224, whole genome shotgun sequence.
ACCESSION   DASPFX010000353 DASPFX010000000
VERSION     DASPFX010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4584
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907224"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..659)
                     /locus_tag="VD694_07560"
     CDS             complement(156..659)
                     /locus_tag="VD694_07560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12600.1"
                     /translation="MINGMIKYFLAIIPIAILYPEIASAAHKSFNDIKRIITKIDGLE
                     SDDNNHKDLRNKSKATQALHMFNNGKTPIEVAIELDLPESEVCDLQQEFWALHHLYDL
                     PLVYQQLKNDFDSFFELFKLFKKNKMLSKPHILKIFKYAGHDLPLLEAKIRGLRSEII
                     DQEFREI"
     gene            complement(681..1535)
                     /locus_tag="VD694_07565"
     CDS             complement(681..1535)
                     /locus_tag="VD694_07565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12601.1"
                     /translation="MRKVIVTTSLAVAIITIITSNQLSIYASSITEDDGYTYPDDATD
                     EEKEEIDEREQEAWEDAGRPGDDNDNDNDNDNDNDNDIPECQYGVTQRCVIEEIGLIC
                     SPGYDLSSPSIVGGGHACQDIYAGTYKPDPDPEPDSESKLKECGDGIVAVSCGVGRYW
                     CSGGNGDSFHTNDWRDCKDATKRETSSNYNDNNFNSNNDNNENSNSDNIPECKRNVLQ
                     KCKLSGNTGLLCGVEDLKQGDYNPSVIGNGHACHDVYIGTYDQLLACKDGTYAVSCGS
                     IGVLPGIP"
     gene            complement(1777..3924)
                     /locus_tag="VD694_07570"
     CDS             complement(1777..3924)
                     /locus_tag="VD694_07570"
                     /inference="COORDINATES: protein motif:HMM:NF012364.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase domain-containing protein"
                     /protein_id="HXW12602.1"
                     /translation="MAIQTATGWLLDVSHDFNTGEINLYIRSQDDKVISFKQKLKEYI
                     FYILPKSHRAGDDLYLQLSRNDEVIKKIFWDKKYIDLSNRNETRLIGISVTDMNSQDF
                     QAFIKKLRVDLRVRSLYNVELTATQYFIYNKLKIPPTSKVIIKYEKEKLLFVEKVEDS
                     QDAMLPPFKLMHIRISSGSEPKLNVRFDNQIPVIFNGPSDESFGSYINENKPDIAIVY
                     AEYRQDRSILTSVRNVITEQSSRTVVVRTRYTIEDISLVEMVEKARFSYLSLQLASTY
                     GMLKLIDSRVTYELIRRNFVIPKLNTVSKHHEEIRTLENIIEMDKAGMIISPQVGLHD
                     NVAVLDFNDEYANIITGHNISYECSSNEFRSDERTTILPSIVQELVTKRVYLKQLLRT
                     QQPDSRQHVNCEARLDILKQILVCLYGTSGSIWNRYSNVNVFEEINRRARQILLKTKD
                     IVQEAGFDLIYADTDAVFLKKKHATRQDFEEIKNVIAKETRLDLTLEFHYKFLVLLYI
                     EADEKMEAKKHYFGLTYDNQLITRGIETRRHDSPIFIKEFQKTLLSKLFDCQSSEEVL
                     TTGYQNALEYITQNINKLMNGEVQITDLVISKLLRQNIKKYRSLFPHVAAAIRLNVSG
                     VIANRGDDIQYVYTDSNHSDPLYTVTPAKLISSKDYDREKYLEMLLDSAEAVLSIFGF
                     SRSFLGFEKKFKHWWDELYQQREREIESIKMES"
     gene            complement(3931..4296)
                     /locus_tag="VD694_07575"
     CDS             complement(3931..4296)
                     /locus_tag="VD694_07575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12603.1"
                     /translation="MGRITPSFRQLYEETVAELKSELQSALVDLGHKSAFDSLLKDGW
                     SREQAAMGNSTLPTVCDKLNLIASIHNRKLTAAMARDLKEKDLKIKQLSNKIDELENA
                     IKIIMDKLKSDPNDLSISE"
     gene            complement(4302..>4584)
                     /locus_tag="VD694_07580"
     CDS             complement(4302..>4584)
                     /locus_tag="VD694_07580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12604.1"
                     /translation="KNKVAIVATGDCKLSNNGIIPKPIGGTYLKHLANIIVYVKSTYW
                     STTNGDITSPYVSFKASMIKHPYQKTPKSVNFYARKIGKRRNPALFVLD"
BASE COUNT         1256 a          876 c          760 g         1692 t
ORIGIN      
        1 ctgaatagaa tcgtaaccga atcatttcct atttcaggtc attttttgac taggaggtta
       61 tcattagttc ttgtttcttt tgatagcatt ctgaaatctt ataataatct ggccaagatc
      121 gaatacttga gcactctgta atttgatagt gttgttcaaa tctctctaaa ttcctgatct
      181 atgatttcac ttcttagtcc ccgtatcttt gcttctaata atggtaagtc atgacctgca
      241 tatttgaaaa tctttaagat atgcggttta cttaacatct tatttttctt aaatagtttg
      301 aacaattcaa agaatgaatc aaagtcattt tttagctgtt gataaactaa tggcaaatca
      361 tagagatgat gtaaagccca gaattcctgt tgcagatcac atacttcact ttctggaaga
      421 tccaattcta tggctacctc aattggtgtt ttaccattgt tgaacatgtg taatgcttga
      481 gtcgctttcg atttattacg taggtcttta tggttgttat cgtcactttc caggccatct
      541 attttcgtga ttattctttt aatgtcgttg aatgacttgt gagctgcaga agcaatttca
      601 gggtagagta tggcgatagg aatgatcgct agaaaatatt tgatcattcc attaatcatt
      661 ccgtagctct ccgttaaccg ttatggtatt cctggtagca caccgatact accacatgat
      721 actgcatatg ttccgtcttt acatgctagc aattggtcgt aagtaccaat atatacatca
      781 tgacatgcat gaccattacc aattacacta ggattataat caccctgttt caaatcttca
      841 acaccacaga gtagacctgt atttccgctt agtttacatt tttgtagtac atttctctta
      901 cactctggta tattatcgct attactattc tcattattat cattgtttga attgaagttg
      961 ttatcattat aatttgatga tgtctctctt ttagttgcat ctttacaatc tctccaatca
     1021 ttcgtatgga aagaatcacc attgccacca ctacaccaat atcgtcctac accacatgat
     1081 acagctacta ttccgtctcc acattctttt aattttgatt ctgaatctgg ttctggatct
     1141 ggatctggtt tgtaagtacc agcgtagata tcttgacatg catgaccacc gccaactata
     1201 cttggactac taagatcata tccaggacta caaatcagac caatttcttc tataacacat
     1261 ctttgcgtta caccatactg acactctggt atatcattat cattatcatt atcattatca
     1321 ttatcattat cattatcatc tcctggccta ccagcgtctt cccatgcttc ttgttctcgt
     1381 tcatctatct cttctttttc ttcatcagtg gcatcatctg gatatgtata gccgtcatct
     1441 tcagttattg aagacgcgta tattgaaagt tgatttgatg ttataattgt tattatagct
     1501 actgccaagc ttgttgttac aatcactttt ctcatatgtc attgatttta attggttgat
     1561 taatttatgc tgtgctagca aaagtgacat aatcagagat tctgatggaa atgggtgttc
     1621 ttgagtatgg ttatttatag caacagaata ctgataacaa ctattaagca gcttagttaa
     1681 cacaactttg tcttcgtcag tcggaagttt atctatgaag ccgcgccaag tctcgatctc
     1741 ttagtaagta tatcttcatc tgggaataga ctcatcttac gactccattt ttatcgattc
     1801 tatttctctc tcacgctgtt gatataattc gtcccaccaa tgcttgaatt tcttctcaaa
     1861 tcctaagaat gatctactaa atccaaatat cgacagtact gcttctgcag agtccagtag
     1921 catttccaaa tacttttccc tgtcatagtc tttggatgat atgagtttgg ctggagttac
     1981 tgtatataga ggatcgctat ggtttgagtc agtgtaaaca tactggatat catcgccccg
     2041 gtttgcaatt actcctgata catttaatct aatggcagca gctacatgtg ggaataaact
     2101 tctgtacttc ttgatatttt gtcggagtaa tttggagata actaaatcgg ttatttgaac
     2161 ttctccgttc attaatttgt taatgttctg ggtgatatac tcaagagcat tttggtatcc
     2221 tgttgttagt acttcttcag agctctgaca atcaaataac tttgaaagca aagttttctg
     2281 gaattctttt atgaaaatcg gcgagtcgtg tctgcgcgtt tcaattccgc gggtaattaa
     2341 ctggttatca tatgtgagcc caaaataatg tttttttgct tccatttttt cgtcggcttc
     2401 gatatataat aataccagga atttataatg gaattctaga gttaaatcga gtctggtctc
     2461 tttagctatc acattcttta tctcctcaaa atcttgtctt gtcgcatgtt tcttcttcag
     2521 aaacactgcg tcagtatctg cgtatattag atcgaagcca gcttcctgta cgatatcttt
     2581 tgtttttaat agtatctgtc ttgcacgcct gttgatctcc tcaaatacat tcacattact
     2641 gtatctattc caaatggagc cagaagttcc gtaaagacag acaagaattt gttttagtat
     2701 atctaggcga gcttcacaat tgacatgctg acggctgtct ggctgttgag ttcttagaag
     2761 ttgttttaga tatacgcgtt ttgtaacaag ttcttgtaca attgatggga gaatagtggt
     2821 acgttcgtcg cttctaaatt cattagatga acattcatag ctaatattat gtccggtaat
     2881 aatgtttgca tattcatcgt taaaatcaag tactgcaaca ttgtcatgta atccaacctg
     2941 cggggaaatt atcatgcctg ctttatccat ttcaattata ttttcaagtg ttctaatttc
     3001 ttcgtgatgc ttagataccg tgtttagttt gggaataaca aagtttcttc taatcaactc
     3061 gtaagtaacg cgactatcga taagtttcag catcccgtat gttgatgcta gctgcaacga
     3121 aagataacta aatcgagctt tctccaccat ttcaactagt gaaatatctt caattgtata
     3181 gcgggtacga actacaacag ttcggctcga ttgctcagtg atgacattac gtactgaagt
     3241 gagtatgctt ctatcttgtc tgtattccgc ataaacaata gcaatatctg gtttattctc
     3301 attgatataa gaaccaaagc tctcatcgga tggtccatta aatatgaccg gtatctgatt
     3361 gtcaaatcgt acattaagct ttggttcgct accactgctg atcctgatat gcatcaactt
     3421 gaatggcggc agcatagcat cctgactgtc ttctactttc tcaacaaata gtagcttttc
     3481 tttttcatat ttgattataa ctttgctcgt tggtggaatc tttagcttat tgtaaatgaa
     3541 gtattgagtc gctgttaatt ccacattata taaagagcgt actctcaaat ccactcttag
     3601 tttctttatg aatgcttgga aatcctgtga attcatatct gtcacactta taccgattag
     3661 tcgagtctcg tttctatttg aaagatcaat atacttctta tcccaaaata ttttcttaat
     3721 tacttcatcg tttcttgata attgtaaata tagatcatct ccagctctat gagattttgg
     3781 cagtatgtaa aaaatatatt ctttgagttt ttgcttaaaa ctgattactt tatcgtcttg
     3841 tgatcttatg tataaattaa tttcgccagt attgaagtcg tgtgaaacat ctagcagcca
     3901 ccccgtcgca gtttgaatcg ccatttatta ttattcagat atggaaagat catttggatc
     3961 agacttcagt ttatccataa taatctttat agcattctca agttcgtcaa ttttatttga
     4021 tagttgtttt atcttcaaat ctttttcttt caggtctcta gccattgctg ccgtaagttt
     4081 tctattatga attgaagcga tcaaatttaa tttatcgcaa acagttggca gggtagaatt
     4141 acccatagca gcttgttctc ggctccaacc atcttttaat agcgaatcga atgcgctttt
     4201 atggccaaga tcaaccaaag ccgattgcaa ttctgatttc agttcagcta ctgtttcttc
     4261 atataattgt ctaaaacttg gtgttattct acccatataa ttcagtccaa tacaaataac
     4321 gcaggatttc ttcgcttgcc aatttttctt gcgtagaagt taaccgactt tggagttttc
     4381 tggtatgggt gtttaatcat tgacgcttta aatgaaacat atggactggt aatatcacca
     4441 ttagttgttg accagtaagt tgacttgaca tatacaataa tatttgcaag atgtttcaga
     4501 tatgttcccc caataggttt tggaataata ccattatttg agagcttaca gtctccggtt
     4561 gctactatag cgactttatt tttg
//
LOCUS       DASPFX010000354         2571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1763288, whole genome shotgun sequence.
ACCESSION   DASPFX010000354 DASPFX010000000
VERSION     DASPFX010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1763288"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(353..571)
                     /locus_tag="VD694_07585"
     CDS             complement(353..571)
                     /locus_tag="VD694_07585"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HXW12605.1"
                     /translation="MLETPIVFTKQIDRIPKVAIGILVGILFFGMFIIGYDQGHLFSL
                     VEGQKAFDEKWIHEFYHDMRHAAGFPCH"
     gene            809..1114
                     /locus_tag="VD694_07590"
     CDS             809..1114
                     /locus_tag="VD694_07590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12606.1"
                     /translation="MVQMREFHEGESIRVNGKDQIIPDPRRFPKYIVGKVGTVRKVIG
                     YVHCPPDHEKKPPYHSCIFSLNQVSPNATENDKVVMEVYEDYLTHEPLSSLPPRKSR"
     gene            1144..2112
                     /locus_tag="VD694_07595"
     CDS             1144..2112
                     /locus_tag="VD694_07595"
                     /EC_number="4.2.1.84"
                     /inference="COORDINATES: protein motif:HMM:NF014973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase subunit alpha"
                     /protein_id="HXW12607.1"
                     /translation="MDNDPHKPINPVSAYLNPTLPDYLWKLVAFEEFLCGNQIIAFEE
                     SRRKKDELEAKRGFQFGVSYFDHRIIRIREVLKDRGLIKEADLRAEVERQQGHYEKKG
                     KKPVNPLELEVLAMINLTLGDSMTLSRGFERHYEQMKGRTPITGARVVAKAWVDPDFK
                     ALLKVSPKEAILGWDPSVIYANDKEIIDPNGLEILENTEKLRNVCVCTLCSCYPREYL
                     GEPPLWYISKEYKQRIITEPRKYLADYGLKLNDDVEIRVYDITADIHYMVLPMRPKGT
                     EKLSEDELSMLVTRDSLLGVGDPLPADRLPEVKEAIMKKGNLLSYP"
     gene            complement(2344..2544)
                     /locus_tag="VD694_07600"
     CDS             complement(2344..2544)
                     /locus_tag="VD694_07600"
                     /inference="COORDINATES: protein motif:HMM:NF013752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12608.1"
                     /translation="MDGAYDSNNNFQFLSFKGIQPAIKVRKNAKYRKINHYLRNKNVQ
                     SQKTNLQQQWKDSVGYGQRDGL"
BASE COUNT          870 a          418 c          445 g          838 t
ORIGIN      
        1 aaattctttt ctgacatctc taatgacctt ctctacatcc tgctttttca attctgtctt
       61 gtaagacgta tcaattcaac atctttacta attttatcaa taccgaatct tagatcttgt
      121 tcaaattcag attttgctat ctgtcttaaa aatttattat tgtacaactc tgccagaacg
      181 acatttttta attgtgaaga tcttgcaaga taaataacat ttgaatacat tcctaagaag
      241 aataaatata ctgaaaaact agtaaacgtt cctgcaatag ctccagaaag gagtgttatt
      301 ataataaaaa taactgtttt atatttgatt tagagacgtc gtagaaaata tactagtgac
      361 acggaaaacc tgcagcatgt ctcatatcat gatagaattc gtggatccat ttttcatcga
      421 atgctttctg tccttcaact aaactaaaca agtgcccttg atcatatcct attataaaca
      481 ttccaaaaaa caagatacca acaagtatcc caatagctac ctttggtatt cggtcaattt
      541 gtttggtaaa aactatgggt gtttctagca ttctgagtaa ttaggactat gaagtattta
      601 agtttacaat acaagtatag tactaggtgt ttagactata gtaaaatatt ttagacattt
      661 tcccaaattt atacgatctc gtaaatatac tgttaattat tagcaagcga ataatgaaca
      721 ggagaacact gttagagcta atgacttatc tacataatta gaagaacata ttaaaagata
      781 aatacatcat atgataataa tatcacctat ggttcagatg cgtgaatttc acgaaggtga
      841 atccattaga gtaaatggaa aggatcaaat aattccagat cccagaagat ttccaaagta
      901 catagttgga aaagttggta ctgttcgtaa ggtaataggt tatgttcatt gtccacctga
      961 ccacgagaaa aaaccaccgt atcattcctg cattttcagt ttgaaccaag tttcacctaa
     1021 cgcaacagag aatgataaag ttgtcatgga ggtttatgag gattatttga cacatgaacc
     1081 attatctagt ttgccaccaa ggaagtcgag ataatgagca ccgattaaca cttacaaaga
     1141 attttggata atgatcctca taaaccaata aatcctgtta gtgcatactt aaatccaaca
     1201 ttaccagatt atctgtggaa gctagttgca tttgaagagt ttttatgtgg caatcagata
     1261 attgcctttg aagaaagcag acgcaaaaaa gatgagcttg aagcaaaacg tggcttccaa
     1321 tttggagtat catattttga tcatagaatt attagaatca gagaggttct taaggacaga
     1381 ggattaatta aggaagctga tcttcgtgca gaggtagaaa gacaacaagg tcattatgag
     1441 aagaagggta aaaaacctgt caatccactt gaattggagg tcctagcaat gataaacttg
     1501 acattgggag atagtatgac cctgagtagg ggatttgaac gacactatga acaaatgaaa
     1561 ggtagaactc caatcacggg tgctagggtt gttgccaagg catgggttga tccagacttt
     1621 aaagccttac tcaaggtctc gcctaaagaa gctattcttg gatgggatcc gtctgttata
     1681 tacgcaaacg ataaggagat aattgatccg aatggattag agattttgga aaatacagaa
     1741 aaacttcgta atgtatgtgt atgtactctc tgttcatgtt accctagaga atatcttggt
     1801 gagccaccat tatggtatat cagcaaagaa tacaagcaaa gaataattac cgaacctaga
     1861 aaatatttag ctgattatgg attaaaacta aatgatgatg tagagattcg tgtgtacgat
     1921 attactgcag atattcatta catggtactt cctatgagac ctaaaggtac agaaaaactt
     1981 tctgaagacg aattatctat gctagtgact agagacagtc tactaggtgt aggagatcct
     2041 cttcctgcag atcgactacc agaagttaaa gaggctatta tgaaaaaagg aaatcttttg
     2101 tcatatccat aattttttca tgaattttgt attggatttg ttattttgat aatttaatac
     2161 tctgttgcat aactcattta gataatcatc tattttctgt tagtaaggta aattatgtaa
     2221 cagttatact ttgaaaccac ttatacaatg atgtttttag tattatctcc tttatcatct
     2281 tctcaaatct gatagcagta acatattcac cgaacattct cttcattcaa gaaaagatag
     2341 tttctataat ccatctctct gtccatagcc tacgctatct ttccattgtt gttgtagatt
     2401 ggttttctgt gattgtacgt tcttgtttct caaataatgg tttatctttc tatacttggc
     2461 attctttctt accttaattg ctggttgaat tcctttaaat gatagaaatt gaaaattatt
     2521 gttactgtca taggcaccat ccataatggc agtttcaact tagttgaaac t
//
LOCUS       DASPFX010000355         5603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_944135, whole genome shotgun sequence.
ACCESSION   DASPFX010000355 DASPFX010000000
VERSION     DASPFX010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5603
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_944135"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..688)
                     /locus_tag="VD694_07605"
     CDS             complement(197..688)
                     /locus_tag="VD694_07605"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HXW12609.1"
                     /translation="MVRKITVLVPVIVGCVILGVLGLTFIPEGIKNRNLEFSKGTIAI
                     NNHSISTEIAETPAERQRWLTFKSEELPLNSSILLVYDKPDLYSLWLLNIQFNLDLIW
                     FDGDGNIVYIKQDVVPCKNTLDASQCTYKNTIPAKYILAATTGFINYHNITKDTKIKL
                     ISI"
     gene            838..1131
                     /locus_tag="VD694_07610"
     CDS             838..1131
                     /locus_tag="VD694_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HXW12610.1"
                     /translation="MPVAILPDVSEQHCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACIGVCPTKAIFWMRPMDYTPGQPIPLKKNGLFVKGWEEG"
     gene            complement(1256..1525)
                     /locus_tag="VD694_07615"
     CDS             complement(1256..1525)
                     /locus_tag="VD694_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12611.1"
                     /translation="MNISTVVSVLNVSVLLTLLVIYARIYNKTRAVFTIGLMFFTVML
                     MLHNLIAVYAYLVMAPLYPDDLLPYFVAIHMAELVGIVSLLRVTL"
     gene            1668..2696
                     /gene="fen"
                     /locus_tag="VD694_07620"
     CDS             1668..2696
                     /gene="fen"
                     /locus_tag="VD694_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease-1"
                     /protein_id="HXW12612.1"
                     /translation="MGLDLKPILTHTNIKLNDLSNKIIAVDAFNTIHQFLATIRGSTG
                     ELLTNSQGEITSHLSGLFYRNINLLAEGIKLVYVFDGVSSPLKFDEIERRHQIKQIAA
                     EKYEKALVQGKLEEARKYSQATSVLTDKMIQESKRLLALLGIPTIQAPSEGEATAAKL
                     TNSGLVQICASQDYDSILFGAKRLVRNITISGKRKVPNRNAFIDVPLEIFNLEDILDQ
                     INLTNEQLVDVGILIGTDYNIGGIPGIGPKTALKLIQKYSKLENIDQLQEKLSDIPYE
                     EIRELFLKPKVANVTNNDIKFEPIDYDKVIEFLSTEKNFSPDRINSALQKVQNSEKNK
                     NQSLEKWF"
     gene            complement(2733..4382)
                     /locus_tag="VD694_07625"
     CDS             complement(2733..4382)
                     /locus_tag="VD694_07625"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HXW12613.1"
                     /translation="MNFNADYDFSDKEKSILDQHFSNSDKHVFAITTPRQVDRGALMS
                     RYSRSDKTMRKIFLDEFAANTNRGSEFYSKILSEYGDDSVAELGEAQIAVEWISNIAA
                     KKIEDQRIGLSYLEKSSRYIPFDKKVGNMYKYYRDEKILKSKYADLYIESCDHSFDVY
                     SNSINLMQKYISEIEPIDDFMYFDSISKSEKPFTKLTHDQDIESAKKVYHSTVRSKTL
                     DILRNLLPASTLTNLGITGNGRAFEYLLTRLYSSNLVELKELARMINSELDCVIPSFI
                     KRVNEKHGKSLQSFMINTNKEITKLTDKYLEDIEPDYSPVDVRLIDYMDSKDAEVKVV
                     SAILYENAQGQSLHDIMKLVKSFPQARRNEIILAYTKFRGNRRHRPGRAFEMVEYLFE
                     MFTNFGMFRDLHRHRILTMERQLLSTKHGYDIPKEVIDSGLEKEFKDCMYLSSNAYQN
                     IAKTMPVEAQYAVNFAYKYPYFIKINLRELYHVIELRTTAQGHPDYRHICQQIFKKIN
                     DIHPLLMKGMKFVDMNQYELGRFDTEKRKELKRRELLPSKN"
     gene            4526..5317
                     /locus_tag="VD694_07630"
     CDS             4526..5317
                     /locus_tag="VD694_07630"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HXW12614.1"
                     /translation="MSDIKLEFVGKQVKDMYGAYVGKVIGLVTDIDGSIESVGVDCGS
                     TGLQKLSYEQLLVQGDYVIFIPKWRMEAQKLLRQKNLTLKRVKALENLVEENDLMKDD
                     AEVLHLIYERRLVDLESNEQEVIKTLNSRLRELDVQSTTIKTIIFDAKLQYRSNDILE
                     ETYQEINANSTELLDRILLEKDEINSFLSRITQPYSEIATNGSEDKNIDQAQTEEQHI
                     DEATIETQTSGSAVVNEQNSSVSGDSQDDETEGNWLNEVLTRDTA"
     gene            5489..>5603
                     /locus_tag="VD694_07635"
     CDS             5489..>5603
                     /locus_tag="VD694_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HXW12615.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTRIMYKAFLSYAQLR"
BASE COUNT         1912 a          953 c          962 g         1776 t
ORIGIN      
        1 ccaataaatt accaaagact agaagcggta agattatgag gagattatta aaatcaatta
       61 gtacaaactc tgacattgta ggtgatacta gcacactcga agacgaggct tcaattgaag
      121 aaatcaaaca ggtgtatagg gattttcaaa acatcactaa acggtaaaag gtgcaagaat
      181 ttagtacaat gaatttctat attgaaatta attttatctt tgtgtctttt gtaatgttat
      241 ggtagttgat gaatcctgta gttgctgcca gaatatattt tgctggtatt gtgttcttat
      301 aggtacattg cgatgcatct aaagtattct tacatggcac tacatcttgt ttaatataga
      361 caatattccc atctccatcg aaccaaatta ggtccaaatt aaattgtata ttcaacaacc
      421 acaaggaata cagatcaggt ttatcataaa caaggagaat cgaagaatta agggggagtt
      481 cctcactttt aaaagtcagc catctttgtc gttcggcagg agtttcagcg atttcagtgc
      541 ttattgaatg attatttatt gctatagttc cttttgaaaa ttctagattc ctattcttaa
      601 ttccctccgg gatgaatgtc aaacccaaaa cacctaaaat cacacatcca actataacag
      661 gcacaagtac tgtgatttta cgaaccacat gtaaacaact tcaaaaatat aatttctacc
      721 tttgggtcaa aatttctgta ttgtaattct atatgcaatt tagaattttt atatcagtgt
      781 tataaaatag cacagtgttt aaatagtttc gactttactt ctttttaagt gaattaaatg
      841 ccagtagcaa tacttccaga tgttagcgaa caacattgta tcggctgtgc tctttgtgtc
      901 gaaatctgta ctgctcttgg tccagatgta ttgagggtaa aaccagtaga gggatggaaa
      961 agaggtaaag cttttgtatt ctatcctgaa agatgcattt cagatggtgc atgtataggg
     1021 gtttgcccaa ctaaagcaat cttttggatg agaccaatgg attatacacc aggtcagcct
     1081 attccactaa agaagaatgg tctgttcgta aagggatggg aagaaggtta accataaccc
     1141 caaaatcatt tttttcttat ttttgatttt cttatttttg ataatactat ctaatggatc
     1201 ctattgtaat tagctaacag gatacttttg atttgacatt atttgtgaca tgtattcaga
     1261 gggttactct taaaagagaa acgattccca caagttctgc catgtgtatt gcaacaaaat
     1321 aaggcaataa atcgtcggga tagagtgggg ccatgactag gtaagcatat actgctatca
     1381 aattatgaag cattagcatt acagtaaaga acattaaacc aatggtaaat accgctctag
     1441 ttttgttata tatcctggca taaatcacta acaatgtcaa caagacacta acattcaaga
     1501 cacttaccac ggtgcttatg ttcataagga gactcatagg ttagaatcat gataatcaaa
     1561 ttaccttatc tacttttttc cagatcccat ccaattcaag gggccccaaa ggaccataaa
     1621 aaatagaaaa aaaataatac aaagattatg taatcatagt cccatcaatg ggcttagatt
     1681 taaaaccaat cctcacacat actaacataa agctaaatga tctttcaaac aaaataattg
     1741 cagtagacgc tttcaataca atccatcaat ttctagctac aattcgtgga tctaccggag
     1801 aacttcttac taactctcaa ggagaaatta caagccattt gagtggattg ttctatcgta
     1861 atatcaattt acttgcggaa ggtatcaaat tagtttacgt atttgatggc gtgtccagtc
     1921 cgttaaaatt tgatgaaatt gagcgcagac atcaaatcaa gcagatagca gctgaaaaat
     1981 atgagaaagc acttgttcaa ggaaaactag aagaagcaag aaaatacagc caggcaacat
     2041 ctgttctgac cgataaaatg atacaagaat caaagagatt gctcgcttta ttaggaatcc
     2101 ctacaataca agccccatca gaaggagagg cgactgcagc caagctaact aattcaggtc
     2161 tcgtgcagat ttgcgcaagt caggattatg attccattct ttttggtgca aaacgacttg
     2221 taagaaatat tacaataagt ggtaaaagga aagttcccaa cagaaatgct ttcattgatg
     2281 ttcctctaga gatatttaat ctggaagata ttcttgatca aattaatttg acgaacgagc
     2341 agcttgtcga tgtaggaatc ttaattggaa cagactataa tattggcggt atacctggaa
     2401 taggaccaaa aacggcattg aaattaatac aaaaatattc taaattggaa aatattgatc
     2461 aacttcaaga aaaattgtct gacattccat atgaagaaat tagggaatta tttttgaagc
     2521 ccaaagtagc aaatgttact aataatgata ttaaattcga gcctattgat tatgacaaag
     2581 ttattgaatt tttgagcacg gaaaaaaact tttcaccaga tcgtatcaat tcggcattac
     2641 aaaaggttca gaattcagaa aagaataaga atcaatcatt ggaaaaatgg ttctaaatcc
     2701 attctttaat agaaattttt gtacccgcat tattaattct ttgaaggtaa taattctctt
     2761 ctcttcaatt cttttctctt ttcagtatca aatcttccaa gctcatattg gttcatatcg
     2821 acaaatttca tccctttcat gagaagtgga tgtatatcat taattttctt aaaaatttgt
     2881 tgacaaatgt ggcgataatc aggatgccct tgagctgtag tgcgtaattc aatcacatga
     2941 tacagttctc tcagatttat cttgatgaaa tatggatatt tataagcaaa attaacggca
     3001 tactgagctt caactggcat cgtctttgca atattttgat aagcattact agaaagatac
     3061 atacaatctt tgaattcttt ttccaaaccc gaatcaataa cttctttggg gatatcatat
     3121 ccatgctttg tggacagcaa ttgtctttcc attgtaagaa ttctatgacg atgcaaatct
     3181 ctgaacatcc caaaattagt aaacatttcg aatagatatt caaccatttc aaacgccctg
     3241 cctggtctgt gccttctatt tccacgaaat ttcgtatagg ccaagataat ttcatttctt
     3301 cttgcttgtg gaaatgattt aactaatttc attatgtcgt gaagtgattg tccttgtgca
     3361 ttttcatata atatcgctga aacaactttc acttctgcat ctttactatc catataatca
     3421 attagcctta catccacagg ggaatagtca ggctcgatat cttctagata tttgtccgtc
     3481 aattttgtta tctccttgtt agtatttatc ataaacgact gaagagattt accatgtttc
     3541 tcatttactc gtttaataaa agaaggtatt acacagtcta gttcagaatt tatcatacga
     3601 gctaattctt tgagctcaac tagatttgag ctgtataaac gtgtcaagag gtattcaaat
     3661 gccctaccat ttccggttat acccaaattt gtaagagtgg aggctggtaa gagattacgt
     3721 aaaatgtcga gtgttttaga tctcacagta ctatgataaa ccttttttgc tgattctata
     3781 tcctggtcat gagttagttt ggtaaagggt ttttctgatt tagaaattga atcgaaatac
     3841 atgaaatcat cgattggttc tatttctgag atatatttct gcattagatt gatactatta
     3901 ctataaacat caaacgaatg gtcacatgat tctatataga gatctgcata tttcgattta
     3961 agtatttttt catctctata atatttatac atgttaccaa ctttcttatc aaaaggtatg
     4021 taacgagaag atttttccaa ataagataat ccaattcttt gatcctcaat tttttttgcc
     4081 gcaatgttgg agatccattc tacggcaatt tgcgcttccc ccaattccgc aacagaatcg
     4141 tcgccatatt ctgacaatat cttgctatag aattcgcttc ctctgttggt gtttgctgca
     4201 aattcatcca agaatatctt tctcattgtt ttgtcagaac gagaatatct cgacatcagc
     4261 gctcctctgt caacctgcct aggagttgta atcgcaaaga catgcttatc agaattagaa
     4321 aaatgttgat caagtattga tttttcttta tctgaaaaat cataatcagc gttgaaattc
     4381 ataatattaa tagaaaataa tcctcatact tattttttca gctcatcata ttttcaatgc
     4441 tccaacatca agtattaaaa catctactaa attattgatt atttttaaca ctgccatcat
     4501 tatatccata tgttaattca atctcatgag cgacataaag ctcgagtttg taggtaagca
     4561 agtaaaagac atgtacggcg catatgtggg aaaggtaatc ggactagtca cagatattga
     4621 tggttcaatt gagtccgtag gtgtagattg tggttcaaca ggattgcaga agctgtcata
     4681 cgaacaatta ctcgtccagg gagactatgt gatctttata cctaaatggc gaatggaggc
     4741 acaaaaatta ctaagacaga aaaatcttac tctcaagagg gttaaggcac ttgaaaattt
     4801 ggtagaagaa aacgatctta tgaaagacga tgctgaggtc ttacatctca tatatgagag
     4861 gagattggtt gacttggaaa gtaacgaaca agaggtcata aagacattga attcaagact
     4921 acgggaacta gatgtacaaa gtacaactat taaaacgata attttcgacg caaagttaca
     4981 atataggagt aatgatatcc ttgaagaaac atatcaggaa attaatgcaa attctaccga
     5041 gttgttagat cgtattctac tggaaaaaga tgagataaac agctttctct caagaattac
     5101 tcaaccctat tcagagatag cgacaaatgg atcagaagac aagaacatcg atcaagcaca
     5161 aacagaggaa caacacattg acgaagccac aatagagact cagactagcg gcagtgcagt
     5221 tgtcaatgaa cagaattcgt cagtatctgg tgattctcaa gatgatgaga cagaaggcaa
     5281 ttggttaaat gaagtactta caagagacac ggcttagtag tctgtaaccg aatttcgaaa
     5341 taaaatcatc tattattttt tcacgcttat ttttaacgta aattattcag attatttagc
     5401 tttaacaatc taaaatacac gtcaatgtac ttatgttcta gattattgtg ccaatacatt
     5461 aaaataaata agtttagtgt atcttgatat gaaatacaga agtagaacag aaatagtagc
     5521 aatgatccta gaagcagcaa atggaggtgc aacaaagacc agaatcatgt acaaagcttt
     5581 tcttagctat gctcaattga ggg
//
LOCUS       DASPFX010000356         3265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_944853, whole genome shotgun sequence.
ACCESSION   DASPFX010000356 DASPFX010000000
VERSION     DASPFX010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_944853"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..417
                     /locus_tag="VD694_07640"
     CDS             <1..417
                     /locus_tag="VD694_07640"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW12616.1"
                     /translation="RIMLRMINTIGGVVIMVSDQAQAVKFYTEKIGFDIRMNVPFFGG
                     KWIEVAPKDSESTLSIMEPNSQLMPPEELEFAKKSIGRNTGVWFYSSDIQSTYEELES
                     NGVNITKPEKQEWGGTMSLVKDLDGNMFTLLSSPEG"
     gene            complement(535..1269)
                     /locus_tag="VD694_07645"
     CDS             complement(535..1269)
                     /locus_tag="VD694_07645"
                     /inference="COORDINATES: protein motif:HMM:NF033484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HXW12617.1"
                     /translation="MLISGHQSDKGLVRENNEDALYVDDKVGVYVLADGMGGHAGGEV
                     ASNIAVNVVAKILSSSIMIPQKKNLEDIIHNAMHSANDAIISSKKNHIELFDMATTIV
                     ISIFHDDVVNYIHLGDSRAYLFRKNDNLIQLTTDDSLVVEMVKQGLINKYDFRSHSLR
                     NIVTRYLGTTNLEIPEIHQTSVEANDRIILCSDGLTNMLTEEEIRSVLSKNTSMGPQD
                     LCDLLVDSANTNGGEDNISVIVIQNK"
     gene            complement(1532..2353)
                     /locus_tag="VD694_07650"
     CDS             complement(1532..2353)
                     /locus_tag="VD694_07650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12618.1"
                     /translation="MEDRKMLDLDASYYLKSKDAFSIFLDIPFWIWDTCLHRNQYATE
                     DGYCCFNHVLSLPSKDGVSYPLFRFQKIIFDTLEQNQNVWIKKARGLGLTTFILRYLT
                     WKILFSSEMDYKSIYIISGNDDKSNDKMELILKKLFEKRFPSLKLDSRFDDLWLKKTR
                     IKILNPNDIIDFTAFDTAYLFIDDADFLAVSEQIKLEKAISSCLVKSNCRTIMVSTPN
                     QRGGFFEKIEHDTTSRYAKLHLDYRYGMGTLYDNKFIETKKLEPEFDREYNIMYK"
     gene            complement(2464..3039)
                     /locus_tag="VD694_07655"
     CDS             complement(2464..3039)
                     /locus_tag="VD694_07655"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HXW12619.1"
                     /translation="MGVGSSMRKNSISTNALRSVLEIISTKYETEVRLVNLFETELPM
                     YRPSTGFENENVKKVTSDVNWATAFLLASPDYHGSMSGTMKNFLDFFWKEFSGRTFGY
                     IVSSHEKGLTVMDQMRTAVRQCYAWSLPYGVSINEREDFNQDGEVISKRLQTRMEMLA
                     RDLVVYGRLIYSQFMKDKDSLEPNTFAHYYL"
BASE COUNT         1036 a          605 c          530 g         1094 t
ORIGIN      
        1 agaataatgc ttagaatgat aaatacaata ggtggtgtgg ttataatggt atcagatcaa
       61 gctcaggcag tgaaatttta tacagaaaaa attggttttg atattagaat gaacgttccc
      121 ttttttgggg gaaaatggat agaggttgca cccaaagact cagaatcgac gctaagtatt
      181 atggaaccta actcacaact gatgcctcct gaggaattag aattcgccaa gaaaagcata
      241 ggcagaaaca ccggagtttg gttctactcg tcagatattc aatcaacata tgaagaactt
      301 gaatcaaatg gtgtgaacat tacaaaacca gaaaaacagg aatggggcgg cacaatgtct
      361 cttgtaaaag atcttgatgg aaatatgttt actctgctat cgtcccctga aggctgacac
      421 tgattcgttc gcaattatgc gcaattatgt cagccctctg tgccaagaca gaagattgaa
      481 agtcccaaac tggtgaatgt tatcacgcgt tgataatttt tcttcttgaa atctctattt
      541 gttttgaatt acaataacgg agatgttgtc ttcgccacca tttgtatttg cgctatcaac
      601 aagtaaatca cacagatctt gcggacccat tgaagtattt ttgcttaata ccgaccttat
      661 ttcttcctca gtgagcatat tggtaagacc atccgagcag aggattattc tatcatttgc
      721 ttccacacta gtttgatgaa tttcaggaat ttccaaattg gtggttccaa gataacgtgt
      781 cacaatattc cgcagactgt ggcttcgaaa atcatatttg ttaatcagtc cttgctttac
      841 catttccact accaaagaat cgtcagtggt tagttgaatc agattgtcat tttttctgaa
      901 caaatacgcc ctgctgtcgc ctaaatgtat ataattaaca acgtcatcgt gaaaaattga
      961 aatcactatt gttgttgcca tatcaaataa ttcaatatga ttttttttag atgaaatgat
     1021 cgcatcattt gcactgtgca tagcattgtg gattatatct tcaaggttct tcttttgagg
     1081 tatcattatt gagctggata ggatttttgc tacgacgtta actgcgatgt tacttgctac
     1141 ttcaccgcct gcatgtccac ccattccgtc agctaagacg tatactccta ctttgtcatc
     1201 tacataaaga gcatcttcat tgttctctcg tactaaaccc ttatcagatt gatgtcctga
     1261 aattagcaat agattctatt taccaaaaaa ttgtatttaa attaatatca caaagctatt
     1321 gtgatatatg attatcccat ttctttccaa atcatatgct ctgaaaatca ttgtacctcc
     1381 atagggagca ttatctaaat ggatttgaat tacagaatta tttcacaatt gaaatatttt
     1441 tatgataata ttctcatttt acaattgcta tgataaattg atgatggata agttcaagta
     1501 attagtattg catatgatac taattcagat attatttata catgatattg tattctctat
     1561 caaactcggg ttctaatttt tttgtttcaa taaatttgtt atcatagagc gtacccattc
     1621 catatctata atcaagatgc agttttgcat accgtgaagt cgtatcatgt tctatttttt
     1681 caaagaaacc tccacgttga ttgggtgtcg aaaccataat tgttctacaa ttacttttga
     1741 ctaaacatga tgaaatcgcc ttttctagtt taatctgttc agagactgcc aaaaaatctg
     1801 catcgtcgat aaacaagtat gcagtatcaa aagctgtaaa atcaattatg tcatttggat
     1861 tcagaatctt tatcctggtt ttttttaacc ataaatcatc gaatcttgaa tccagtttta
     1921 gtgaaggaaa tcttttttca aacaatttct ttaaaattag ttccatttta tcattagatt
     1981 tgtcatcatt tcctgaaata atgtatatcg atttataatc catctctgat gaaaaaagga
     2041 ttttccacgt gagatatcta agtatgaaag tggtaagtcc aagtccccgc gctttcttta
     2101 tccagacatt ttggttttgt tctagagtat caaagataat cttttgaaac ctaaacaggg
     2161 gatatgaaac gccatcttta ctcggtaatg acagcacatg attaaaacag caatatccat
     2221 cttccgtagc atattgattt ctgtgcaaac aggtatccca aatccaaaac ggtatatcca
     2281 agaatatgga aaaagcgtct ttgcttttta gatagtaaga tgcatccagg tccagcattt
     2341 ttctgtcttc caagcctccc ttatttacgc ttataataga agttcctaaa caaagttaac
     2401 cgaatagtct agtcttttta ttttataagg acatttatga aaatatttga ctaatactcc
     2461 attctagagg taataatgag caaacgtatt gggttccaat gaatctttgt ctttcataaa
     2521 ttgggaataa attaacctgc cgtaaacaac caggtctctg gcaagcattt ccattcttgt
     2581 ttgcaatctc ttgctgataa cttcgccatc ttgattaaag tcttctcgct cgtttatcga
     2641 aactccatag ggtaaactcc aagcatagca ctgccttact gcagttctca tctgatccat
     2701 gacagtcaga cctttttcat gggatgagac aatataccca aaggttctgc cagaaaattc
     2761 cttccagaaa aaatcaagaa agtttttcat tgttccggac attgacccat gataatcagg
     2821 agaggccaaa agaaatgcgg tagcccaatt tacatcagat gtaacctttt ttacattttc
     2881 attttcaaat ccagtgcttg gtctatacat gggcaattct gtttcaaaga ggttcaccaa
     2941 tctaacttca gtttcatact ttgtagaaat aatttcaaga acacttcgaa gagcattagt
     3001 gctaatggaa tttttcctca tactgcttcc aacacccaat accttaactt tatgttccgt
     3061 aaatcctaat ccaaatatgg actatataaa atatttttca gtagagcctt ccactaaata
     3121 aaataactat taagacctat catttcaata atctctatca agttatgcca attgtcatta
     3181 gacctgattc agaattcaca gatttgttaa aaaacaattt gagagcaaga tatgatgaga
     3241 ggaaaaagga aaggacaggg ttagc
//
LOCUS       DASPFX010000357         4576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_527149, whole genome shotgun sequence.
ACCESSION   DASPFX010000357 DASPFX010000000
VERSION     DASPFX010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4576
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527149"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..436
                     /locus_tag="VD694_07660"
     CDS             <1..436
                     /locus_tag="VD694_07660"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HXW12620.1"
                     /translation="AQECLSQLKSLNVKESIGIDPRNSVKVNDLKIETVHAYNVDKEF
                     HPKNDKKIGFIVEFGNDRLYHIGDSDMIPEMKDTNSTIALVPVSGTYVMTAEEASKAI
                     NELINPKIAIPMHYGTIVGNKEDAIRFSELVTVCKTQILEPE"
     gene            733..3483
                     /locus_tag="VD694_07665"
     CDS             733..3483
                     /locus_tag="VD694_07665"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF014565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HXW12621.1"
                     /translation="MLSGDGVLFRIGNYNFKVRHLLVIAVLAIAFSTAFIMRSFPIKY
                     GYYLNEFDPYFDYRATKYIVDNGLEAYLRWHDNMSWYPEGRDIPRTSQVGLHVTAAYL
                     YKIFGGNSSILDFTIILPVIVGSLTTIVVFALVRSLGGTTAGLFSALLIAFTPALIQR
                     GNLGWFKSEPLGLFFALLALYLLISATKHRPSIAVVKAIAGGLLLGLANASWGGIQYF
                     SIPISLFFFAVTFLRNDIKVPLIVAIVFTVAAIFAAGISPRPGLSFVFGLPGIALIGG
                     TIFLIASAIVRKISSSNTFLRNNWILLGAFFAIAIGIILSGSFHGSSFRYLNAVNPFL
                     SSQNPLVESVAEHFTPTLVEYFTDYSVLLMFAGFGALMAFRRRNDMSIFALIIGITAV
                     YVSATFARLLVFSSIGIILLAGIGLYEITRTVINYKALEPSHKRKRKTEVEKTSQMDK
                     PIKIVYAVIVVVLISIPVIDNGILYPQNSNWLSSADIPPSIANGGTGFRIKTNDWINA
                     LDWIAAKTPTNSVVASWWDYGYWITTLANRTSLADNATINQTRIATIAKMFMDQTENG
                     LKIAKDLKSDYIVVYIVGQRFSGINSSELYVLGNGGDESKKQWFIRIGGFNENNYLEQ
                     DGFTPTPFFWNSTLLGQLIPFTPVSYILNGAPSGEYQPGAMAIYAKNIKYPQNATADQ
                     PLKLVYSSDSFNSNRPGLFFGVLVYEVNKSYVPKTTSDPYNETIENQEKFSINGTSTS
                     SVMESNNQSKLAVLDTTQGPITIEFFPQVAPNHVSNFEKLAESGFYNGTVFHRIVKGF
                     VIQGGDPNTKNNTDKTAWGTGDPGYRIDAEFSNIPHERGIVSMARSSDPNSAGSQFFI
                     VLNDSRFLDNQYSVFGRVVNGMDAVDKIAALQTIQNDQPQDPDAAKINSIKIVDRNAT
                     TN"
     gene            complement(3514..4470)
                     /locus_tag="VD694_07670"
     CDS             complement(3514..4470)
                     /locus_tag="VD694_07670"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HXW12622.1"
                     /translation="MKPKRTKKSDKNFLSDAVRDYKIESNSISLLIDGMAKSGGFESK
                     NLWDGINIIRTMTKDRNCTRFLSFVGSIISTGARGIIKDMLKRKMFDCVITTCGALDH
                     DIARTTTKYYSGDFRMDDGMLYRKNIHRLGNVLVPQNNYGPVIEDKVQACLNNLYKQG
                     IRNISTFDITRSIGETLDDSSFLYWAYKNDIPVVVPGIVDGAVGSQIWFFYQKHKDFT
                     VNLLLDETRLSDLVYEATKTGAFIIGGGISKHHTLWWNQFRGGLDYAVSITTASEWDG
                     SLSGALVAEAISWGKVKGKARQTTIHGEATTLLPFIYAALLK"
BASE COUNT         1465 a          851 c          842 g         1418 t
ORIGIN      
        1 tgctcaagag tgtttatcgc aattaaagag tcttaatgtg aaagaatcga ttggtattga
       61 tcctcgtaat agtgttaaag tgaatgattt gaaaatagaa actgttcatg cgtacaatgt
      121 tgataaggaa tttcatccaa agaatgacaa gaaaattgga tttattgtgg aatttggtaa
      181 tgatcgtttg taccacattg gagattctga tatgattcca gaaatgaagg atacaaactc
      241 gactatcgca ttagtacccg tttccggaac ttatgtaatg acagctgagg aagcatcaaa
      301 ggcaataaat gaactgatta atccaaagat tgcaattcca atgcattatg gtacaattgt
      361 aggtaataaa gaagatgcaa tacgattctc agaactagtc acagtatgta aaacacagat
      421 tttagagccg gaataggtaa aatttttttc aaaaattaaa acttatatac gatctgtttt
      481 tctattatca ttgaaaatgg cagctaaaaa gaaatcgaag tctgctaaga aaggaactaa
      541 atcaaaatca aaatcaaaat caaagaggta gtactttcgc agtcactatt atctcttact
      601 tccccctttc ttttgttgga aacgaaataa aaaaatttga aaatttatca ttgtaattgt
      661 ttttctagaa agtaaaatac cccaagttat ttccagtacg ttaaaaaatg agtgaaatca
      721 acaagcatta ttatgttatc tggagacggc gtcctatttc gtataggaaa ttataatttt
      781 aaagttcgtc atctgttagt tattgcagta ttggctattg cattttcaac agctttcatt
      841 atgcgctctt tcccgataaa gtacggatac tatctcaatg aattcgatcc gtattttgat
      901 tacagagcaa caaaatacat tgtcgacaat ggtcttgagg catatctaag atggcatgat
      961 aacatgtcat ggtacccgga aggtcgagac atacctagga catcacaggt tggactgcat
     1021 gtgacagctg cgtacctata caaaatattc ggcggaaata gctctatctt agactttaca
     1081 ataattttac cagtaatagt aggatcattg acaaccattg tagtctttgc gctagtcaga
     1141 tcgcttggtg gaactaccgc aggattgttt tctgcattac tcattgcttt tactccagct
     1201 cttattcaac gaggaaacct aggatggttc aaatctgaac ctcttgggtt atttttcgct
     1261 cttttggcgc tatatctact catatcggct acgaaacata gacccagcat tgcggtggta
     1321 aaagcgattg caggtggatt gttgctggga ctagctaatg cttcatgggg tggaattcag
     1381 tactttagca taccaatttc attattcttt ttcgcagtaa cctttctgag aaatgacatt
     1441 aaagtcccct tgattgttgc tatcgtcttt acggtcgcgg caatttttgc ggccggcatt
     1501 tcacctagac caggattgtc gtttgttttc ggacttccag gtattgccct catcggagga
     1561 acaatatttc tgatagcttc agcaattgtt aggaaaatta gttcatccaa tactttttta
     1621 agaaacaatt ggatattact tggagctttt tttgctattg cgataggaat tattttatca
     1681 ggaagtttcc acggatcctc attcagatat ctaaatgctg ttaatccatt tctatcatct
     1741 cagaatccac tcgttgaatc agtcgctgaa cactttactc caactttagt ggaatacttt
     1801 acagattatt cagttctgtt gatgtttgca ggatttggag cgctcatggc atttagacgg
     1861 cgaaatgaca tgtcaatatt cgcattgata attggaatta ctgctgttta cgtaagtgca
     1921 acttttgcac gattgcttgt attctcatcc attggaataa tactcttggc aggaataggt
     1981 ctttatgaaa tcacaagaac tgtaatcaat tacaaggcat tagaaccctc tcataaaaga
     2041 aaacgaaaga cggaagtcga aaaaacttct cagatggaca agccgataaa aattgtttat
     2101 gcggttatag ttgtcgtatt aatttcgatt ccggtaatag ataatggcat tttgtatccg
     2161 cagaattcaa attggttgag ttccgctgac attcctcctt caattgcgaa tggaggtact
     2221 ggatttagaa tcaagaccaa tgattggata aatgctttag actggatagc tgctaaaaca
     2281 ccgaccaatt cagtggtcgc atcttggtgg gattatggtt actggataac aacacttgca
     2341 aacagaacta gtttggccga taacgctaca atcaatcaaa ctcgaattgc aactatagca
     2401 aagatgttta tggaccaaac tgaaaacggt ctcaaaattg ccaaagatct gaaatctgac
     2461 tacatagtag tatacatagt aggacaaagg tttagtggaa tcaatagtag tgagctctat
     2521 gttttaggca atggaggaga cgaaagtaag aaacagtggt ttataagaat aggcggattc
     2581 aatgaaaata attatcttga gcaggacgga tttactccta ctcctttctt ctggaatagt
     2641 acattattag gacagctgat accttttact cctgtatctt atatcctaaa tggtgctccg
     2701 tcgggagaat atcaaccagg agccatggcg atatatgcaa aaaatatcaa atatccacaa
     2761 aatgccacag ctgatcaacc attgaaactt gtatactcat cggacagctt caatagtaac
     2821 agacctggtc tatttttcgg agtactagtt tatgaagtca ataaaagcta cgtgccaaaa
     2881 acaacatcgg atccttataa tgaaactatt gaaaatcaag agaaattttc aataaacggt
     2941 acttctacta gtagtgtcat ggaatcaaat aatcaatcta aactggccgt attagatact
     3001 actcaaggtc ctataaccat tgaattcttc cctcaagtag caccaaacca tgtatctaat
     3061 ttcgagaaac ttgcggaatc tggattctac aatggaaccg tattccacag aattgtgaag
     3121 ggatttgtga tccaaggcgg agatccaaat actaagaata atacagacaa aacagcttgg
     3181 ggcacgggcg atcctggtta tagaattgac gcggaattca gtaacatacc acatgaaagg
     3241 ggaatagttt caatggcaag atcatcagat cccaatagtg ccggttctca atttttcatt
     3301 gttttaaacg actctaggtt tttggacaac cagtactcag tgttcggtag agtagtaaat
     3361 ggaatggatg ctgtcgacaa aatagccgca ttacaaacga tacaaaacga tcaaccacaa
     3421 gatcctgatg cagcaaagat aaactcgatc aaaatagtag atagaaatgc aactacaaat
     3481 tgaaattgat aatcaaaaat gaattgaaat atcttatttc aataaggcag cataaatgaa
     3541 tggcaacaat gtagttgcct caccatgaat tgtagtttgt cttgcttttc cttttacttt
     3601 tccccaggat attgcttcgg caactagagc tccactcaag ctaccatccc attcggaggc
     3661 ggttgttatg gaaacggcgt agtctaatcc ccctctaaat tgattccacc acagtgtatg
     3721 gtgtttagaa attccacctc caataataaa agcaccggtt ttggtcgctt cataaaccaa
     3781 atcagatagc ctagtttcat ccagcaataa atttacagta aagtccttat gtttctgata
     3841 aaagaaccat atctggctcc caacggcgcc atctactatt ccgggaacta caactggaat
     3901 atcattcttg tatgcccagt acaggaacga actatcatcc aatgtctctc caatacttct
     3961 tgtaatatca aacgtcgaga tgtttcgtat tccttgcttg tacagattat ttagacaagc
     4021 ctgtacctta tcttctataa ctggtccata attattttga ggaaccaata cattccccaa
     4081 tctatgtata ttctttctat agagcatgcc atcatccatc cggaagtcac ctgagtaata
     4141 ctttgtagta gtacgtgcga tatcgtgatc tagtgcacca catgttgtga tcacgcaatc
     4201 gaacattttg cgttttagca tatcttttat gattcctctg gcaccagtcg agattataga
     4261 acccacaaat gaaaggaatc tagtacaatt tctatccttt gtcattgttc gaataatatt
     4321 aataccatcc caaagatttt tagattcaaa cccgccagat tttgccatac catcaattag
     4381 taatgaaata gaattagatt caattttgta atcacgtact gcatcgctca aaaaattctt
     4441 gtctgatttt tttgttcttt ttggtttcaa ttgccaacag ataaactgcc tgatacatta
     4501 ttatttttat ctatttcagt taggattgtg ctgagaatta cgtgaagaat tgtacacacg
     4561 ctctaaattc aggtga
//
LOCUS       DASPFX010000358         3731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1373852, whole genome shotgun sequence.
ACCESSION   DASPFX010000358 DASPFX010000000
VERSION     DASPFX010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3731
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1373852"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1177
                     /locus_tag="VD694_07675"
     CDS             <1..1177
                     /locus_tag="VD694_07675"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HXW12623.1"
                     /translation="IDKNDTYALTSRGDTLVNLHRYNEAIDNYDAALETDRNDTNVIT
                     SKATALYEMSLYDQAIDNYDNALAIDNNDTYALDGKAVSLYVLERYGEAIKYYDKALA
                     IDNNDTYALNGKGDSFYELENYKEALEQYEAVLDLEPDNDQANISKQGVLNKIKEIRD
                     SSGLEDSGYIQLLQDEWLTDPLSIYVKIDSSINNPQDYLNISLRAIDTWSQLLKQKSA
                     NYIAWNFSIFNSVDNPNLEKISEPVDVILHLTRSSLSNSCGPLVGLTYPFPLDRTEPV
                     YSKVFVSCEDIFTEEFLYPEEVYSIVLHEFGHVLGLDHTFKKQGDLMCPNSYEESIDE
                     DDEYDGCVWSKGENTPSDLDLEALLYKYGVDGFNSPNTKVKEESRFDFSFRYPPITN"
     gene            complement(1235..2158)
                     /locus_tag="VD694_07680"
     CDS             complement(1235..2158)
                     /locus_tag="VD694_07680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12624.1"
                     /translation="MQIDLHIFDLMAGIMHRKRPRHVTIISILLSIFGISSLFLGVYS
                     IFSFEYFSQISLYIAGGIHVLLAVGLLRGSKWARRITIIISILNLIYGIIFFGQLSIA
                     DSILMIIVYGFVLISLFKSKVKEYFRDFRNNDTPSLGSVPIFGSYKTQLISVTKPRTI
                     NQLGKFFLLFSIFSFIVFTILISSFVFQVSEDSKIDLDTRRTKNIDFNKTMEYYLYLF
                     ENLVVLGFGITWVVMCFCMQKNRSWSKTVILDLCVMYVAFGMVRLMSVENSIPIFIVY
                     IAIQTAVALLLLFYFNRSDIEEYYQNMTYVK"
     gene            2608..2817
                     /locus_tag="VD694_07685"
     CDS             2608..2817
                     /locus_tag="VD694_07685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12625.1"
                     /translation="MRKIDDLNDGELRIINQYEVGEALGLRSKQTDEIVDQLRDARMI
                     KKITRNKIVLSPQALYVIHKNEKSA"
     gene            complement(3022..3414)
                     /locus_tag="VD694_07690"
     CDS             complement(3022..3414)
                     /locus_tag="VD694_07690"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12626.1"
                     /translation="MLTTENTYTIMILDDEEDILTLYSDYLSNMGHRILSTYVNADSI
                     LQDIGIEPPDIFIIDYRLPGNMNGVEVAVEILKKFPLARIIFITAFEMLEKELSKQDI
                     FRDKKIDVLIKPIKLNRIQNSLLSLLRK"
BASE COUNT         1306 a          588 c          666 g         1171 t
ORIGIN      
        1 aattgataaa aatgatacct acgcacttac tagcagagga gacactttag taaatttgca
       61 tcgttataat gaagcaatag ataattacga tgcggcactc gaaactgata gaaatgatac
      121 caatgttatt accagtaagg ctacagcgtt atatgaaatg agtctttatg accaggcaat
      181 agataattac gataacgcat tggcaattga taataatgat acttacgcac tcgacggaaa
      241 agcggtatca ttgtatgtgt tggaacgata tggcgaagcg ataaagtatt acgataaggc
      301 attggcaatt gataataatg atacatatgc gttgaatggc aaaggtgatt cattctatga
      361 attagagaat tataaagaag cattagaaca gtatgaagca gtgcttgact tggagccaga
      421 taatgatcaa gcaaatatta gtaaacaagg agtattgaat aagattaaag aaataagaga
      481 tagttctggt ttagaggata gtgggtacat tcagttgtta caggatgaat ggttgaccga
      541 tccgttatca atatatgtca aaattgactc ctcaattaac aatccgcagg actatctgaa
      601 tatttcatta agggctattg atacatggtc tcaattatta aaacaaaaga gcgctaacta
      661 cattgcttgg aatttcagta tcttcaattc agtagataat ccgaacttgg agaagatatc
      721 tgaaccggta gatgtgatat tacatcttac gagatcaagt cttagtaact catgtggacc
      781 tcttgtagga ttaacatacc cgtttccatt ggacagaacc gaaccagttt attcaaaggt
      841 attcgtctcc tgcgaagata tatttaccga agaatttttg taccccgaag aagtatattc
      901 aatcgttttg catgagtttg gtcatgtact aggactggat catacattta agaagcaagg
      961 agatttgatg tgcccaaact cgtatgaaga gtcaatagac gaagatgatg aatatgatgg
     1021 ttgcgtgtgg agcaaagggg agaatacgcc atcagacctt gatcttgaag cgctattata
     1081 caagtacggt gttgacggtt ttaattctcc taatactaag gtgaaagaag agtccagatt
     1141 tgactttagt tttcggtatc cacctattac aaactagata aaatatttcc tatttagggt
     1201 acatagggtt ttttattgca gacaaaatgc aatcctactt tacatatgtc atgttttgat
     1261 aatattcttc aatatctgat ctgttgaaat aaaacaaaag caaaagcgcc actgcagttt
     1321 gtattgcaat atacacaata aatattggga tgctattttc aactgacata agtcgaacca
     1381 ttccaaatgc aacatacata acgcatagat caagaattac tgtttttgac catgatctgt
     1441 tcttctgcat gcaaaagcac attactaccc atgtaatacc aaatcctagt acgactagat
     1501 tctcaaataa atagagataa tactccatag tcttgttgaa atcaatattt ttggttcttc
     1561 ttgtatctaa atctatttta ctgtcttcag atacttgaaa tacaaaagag cttattagaa
     1621 ttgtaaatac aataaaagaa aatatagaaa acagtaaaaa aaatttaccc agttgattga
     1681 tggttctagg ttttgtaaca gaaataagtt gagtcttata cgagccaaaa ataggaacgc
     1741 tccctaatga tggtgtatcg ttattacgga aatccctaaa atactctttt actttggatt
     1801 taaagagcga gattagtaca aaaccgtata ctatgatcat caaaatgctg tctgctattg
     1861 acaactgtcc aaagaatatg ataccgtaaa tcaagtttaa gattgaaatt attattgtta
     1921 ttcttcgtgc ccacttactg cccctcaata ggcctactgc aagcaatacg tgtataccac
     1981 ccgcaatgta tagactaatt tgggagaaat actcaaaaga aaatatactg tatacgccca
     2041 ggaacaaaga acttattcca aatattgaca acaatattga aattatagtt acatggcgtg
     2101 gtctttttct gtgcataatt ccggccatca agtcaaatat atgtaaatca atttgcattt
     2161 aacatttcca taaatattaa ataatgctaa agatgaatta gaatccaaaa ccttgtaaaa
     2221 ggattgattg gaactcagca atcgtactaa catcaacttc ggtgagccct cctataatga
     2281 caaaattgtc cttcatccct tccggcccac tatacttttg tcaccatgtt gatttagaga
     2341 atttagagat tatagagaat agttcgcgtt acaattaggt gtaacaatgt cataattggt
     2401 agtagcatca ataagtccta tcttcagatg tagatatttg cgtaaaacaa catgaacttt
     2461 atcttgatag atttcaatgt ctaggtgcaa aatgacattt agtattatta atcttgaata
     2521 aaaatggcga gttaaattat tggagtttca aaacttaaat agaataatct atgatcgtat
     2581 atattgaggc cgaattttgc agagtatttg agaaaaatag atgatttgaa cgacggtgaa
     2641 ttacgtatta ttaatcaata tgaggtgggt gaagcccttg gattaaggag taagcaaact
     2701 gatgaaatag tcgatcaatt acgtgatgca cgtatgataa aaaaaatcac cagaaacaag
     2761 attgttctca gtcctcaagc attatatgtt attcataaga atgaaaaatc ggcataaaat
     2821 tatttgttat tttccggttc tatttagata gatactggat atttcttaaa aaaaatttgt
     2881 gggtctacac ttccttgcat ttaatacctg tttcctaatg atagtattat ttgacgtaaa
     2941 atgaaacgag caggattatc aatgatttac gagaaaaatt tggcgtggtc ataaggatta
     3001 actagaggca agaaattcta attatttcct tagaaggctc aataaggaat tttgaatacg
     3061 gtttaatttg ataggtttga ttaaaacatc tattttcttg tcgcgaaata tatcctgttt
     3121 tgataattcc ttttctaaca tttcaaaagc ggtaatgaag attatacgcg ccaaaggaaa
     3181 tttctttaaa atttctactg caacctccac tccattcatg ttacctggta gtcgataatc
     3241 tatgataaaa atgtctggag gttcgatacc aatatcttgt aatatactgt cggcattgac
     3301 atatgtgctt agtatcctat gccccatatt agaaagataa tcactgtaga gagtaagtat
     3361 atcctcttca tcatcgagaa tcattattgt atacgtgttt tctgttgtta gcatgattat
     3421 ttaacccgag aatcaattag gcgagttgat aaactgatac aattgttata caaacatcct
     3481 atatacacct tgttaaattg attctatacg atagaaacta ggatgcatag ataagcaagc
     3541 attgatataa gtcgggcacg taatgaaagt atgcgaagaa ccataaaacc agatgtccct
     3601 cctggggaat ttaggtgcag aacatgtgag gttatgtggt caagttttat gaaaagcaat
     3661 attccatgta cagacacaac aataagaact ggcttacaca actttgattt tgccaatcct
     3721 attctttata a
//
LOCUS       DASPFX010000359         2526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_663328, whole genome shotgun sequence.
ACCESSION   DASPFX010000359 DASPFX010000000
VERSION     DASPFX010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_663328"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..818)
                     /locus_tag="VD694_07695"
     CDS             complement(<1..818)
                     /locus_tag="VD694_07695"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HXW12627.1"
                     /translation="MLERDYKVDLDKERFEEQFVGGENGYYDKVEKIFIPKRIVKLLI
                     EEISPGEDSKHSVNAEKIFYEKSRKRVSLNLLQFRNLERDSYSQIFLKYVSDSYLLQN
                     KNQHVRTAVLYIDLVGSTVMTTILLQQQLTSLLKVFFQEMSIVISRNSGFVLKYAGDA
                     VIGYFPESPGVQDACHNAVNCAFDMLNVISESINVVLFENKYPKIKIRIAIDEGENQI
                     VVIGSEPDLLGHVISRAAKIMAKANPNQIIVGYNVFTNLDLDLKKLFNPAGVYRL"
     gene            complement(871..2334)
                     /locus_tag="VD694_07700"
     CDS             complement(871..2334)
                     /locus_tag="VD694_07700"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HXW12628.1"
                     /translation="MKCNTSEYNKSKVYQGGSDPLDKFIRMGNRSLLVKGKSGTGKVT
                     LCLELAKNCTDKFDVMFISRKITEQALYNRFPWVSDFVKPNNILSISSSDFTLDDPSF
                     TITNIINSLSERSTRVEDPFVGITEQKKPFVILDIWDIITKEVENSTRIRAEKLLISL
                     TDKHIGFIVFLTEETENPTIEYMIDGVVLLTQQYYKSYRLREMQIEKLRGIQISRAKV
                     PFTLEGGRFKAFSRLMHHFGSDSNTFVPIPHNKEYYSTGNIELDKRLNGGFRRGSVIS
                     VEIGDEVDRFIFVPFLAPLALNFISQRNLALIVPAADQNVSNVVKYLAPHTNIDNLTN
                     FLRIFVNVGDDDNRPESSIQPLLVSLDDNSSFQATYDKWVTTYRDLRKNGSGCLFSID
                     FSFVELEHQNEIQSILKSIVDISRLIRTSNDLLVMISRPRYRSLEIMKNISDIHLRIF
                     EYDGATMLAAIKPQLFLTNIQTYYGRGFPNALIQDST"
BASE COUNT          787 a          494 c          393 g          852 t
ORIGIN      
        1 agtctataaa caccagctgg attgaataat ttctttaaat ccaaatctag attcgtgaat
       61 acattatatc ctacgatgat ctgattagga tttgctttag ccattatttt ggcagccctg
      121 cttattacat gacctaaaag atcaggttcc gatccaataa caacaatttg gttttcccct
      181 tcatcaatag ctattctgat cttaattttt gggtatttat tttcaaaaag aacaacattt
      241 attgattctg agataacatt taacatatcg aaggcacagt tcacagcatt atgacaggca
      301 tcttggacac caggactttc tgggaaatat cctataactg catccccagc atactttaaa
      361 acaaagccgc tatttcttga tatgactatt gacatttctt gaaaaaagac cttaagcaga
      421 ctggtaagct gttgttgtaa caagattgta gtcatgaccg tggaaccaac cagatctata
      481 tacaaaactg cggtccttac atgctgattc ttattctgta acaaatagga atcagatacg
      541 tattttagaa aaatctggga atacgagtcc ctttccaaat tgcgaaattg taatagattc
      601 agcgagactc tttttctgct tttttcatag aaaatttttt ctgcatttac agaatgttta
      661 gagtcttctc ctggacttat ctcttcaatc aatagtttca caatgcgttt gggtatgaag
      721 atcttctcaa ctttatcata atagccattt tctccaccta caaattgttc ctcaaatctt
      781 tctttgtcca ggtctacttt gtagtccctt tcaagcattg ccatttacac ttctaagact
      841 tatgtaaaga tatcatattc atatcttcca ttatgtgctg tcttgaatca atgcattagg
      901 aaaacctcta ccataataag tttgtatatt tgttaagaat agttgaggtt taatagccgc
      961 caacattgtc gccccatcat attcaaatat tcttaaatga atatcactaa tatttttcat
     1021 gatctctaat gacctgtacc tcggtcttga aatcatgaca agtaaatcat ttgaagttct
     1081 gattagtctg gatatatcta ctatgctttt gaggatagat tgaatctcat tttgatgctc
     1141 taattctaca aaactgaagt caatactgaa tagacagcca cttccatttt ttcttaaatc
     1201 tctgtaggtt gtaacccatt tatcgtatgt agcctgaaaa ctcgaattat catccaaact
     1261 caccaaaaga ggttgtatag aagattctgg cctgttgtca tcatcaccga cgttgacaaa
     1321 tatccttaag aagttagtca gattatcaat attggtgtga ggagcaagat atttcactac
     1381 atttgaaaca ttttgatctg ctgcaggaac tattagcgca agatttcgct gtgagataaa
     1441 attaagagcc agaggagcta aaaaaggcac aaaaataaac ctatctactt catcaccaat
     1501 ttctactgaa ataacactgc cacgtctaaa gcccccattt aatctcttgt ctaattctat
     1561 attacccgta gaataatact ctttattgtg gggtatagga acaaaagtat ttgaatcaga
     1621 accaaaatga tgcatcaacc ttgaaaatgc tttaaatctt cccccttcca acgtaaatgg
     1681 caccttagct cgcgaaattt ggatccctcg aagcttttca atttgcattt ctcgaaggcg
     1741 ataagacttg taatattgtt gagtaagcaa aacaacgcca tctatcatgt attcaatagt
     1801 aggattttct gtttcctctg tcaaaaatac aataaatcct atatgcttat cagttagaga
     1861 tatcagtaat ttttctgctc ttattcttgt ggaattttct acttctttgg tgattatatc
     1921 ccaaatgtct aatatcacga agggcttttt ctgttctgtt atcccaacga aaggatcctc
     1981 taccctggta gagcgttcag ataaagagtt tataatgttg gtaatcgtaa aagaagggtc
     2041 atcgagcgta aaatctgaac ttgaaatcga caagatgttg ttgggcttga caaaatcgct
     2101 aacccatgga aacctgttat ataaagcctg ctcggtaatc ttgcgtgaaa taaacattac
     2161 atcaaatttg tcggtacagt ttttggccaa ttcgaggcat agagttacct ttccagttcc
     2221 agatttacct tttactaata gggatcggtt ccccattctg ataaatttgt ccagaggatc
     2281 cgatcctcct tgatagactt tggacttatt atattcagac gtattacatt tcaccagttt
     2341 tcaaaatcta taggcataat gctaagatga aaacccccac ttgtataatt attactcctc
     2401 tgccttatca cttttgacta ctacaacttt tgaggtatta ctacctatta atccctcatt
     2461 gtcagtaact gttaattcaa aggaatatga attcgaatca acaccactat tctaaaaaag
     2521 atgagg
//
LOCUS       DASPFX010000360         2012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_765315, whole genome shotgun sequence.
ACCESSION   DASPFX010000360 DASPFX010000000
VERSION     DASPFX010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_765315"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..1046)
                     /gene="mvk"
                     /locus_tag="VD694_07705"
     CDS             complement(60..1046)
                     /gene="mvk"
                     /locus_tag="VD694_07705"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004496 - mevalonate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016126 - sterol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HXW12629.1"
                     /translation="MNTYTNRSVSSAPAKIILFGEHFVVYNNPAIIAAINRRIRVAAQ
                     LNDKSRVNIKSGENSLSVPVNSNDSFIMSHDNSAISLFPIFKCVKHVFKEKNLVNVGV
                     NLEIDSQIPHGEGLGSSAASCVSTVAALYSLFSDLDKNQIYETARVMEQNIHTNSSGV
                     DCYVSTFGGIMNFEPEIGFSKVRPKKKFTLLIGTSGIKHSTGEVVSQVRQFRQKNSSA
                     FDDLSSKARAICKKAISFMNEGNESELGNLLTDNHKLLSTLGVSHPEIEKLIENCLDN
                     GALGAKLTGAGKGGAVIALVPNDSSEEILAKIGRGPGKWILVEFDYDGVIPG"
     gene            complement(1043..1885)
                     /gene="amrB"
                     /locus_tag="VD694_07710"
     CDS             complement(1043..1885)
                     /gene="amrB"
                     /locus_tag="VD694_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HXW12630.1"
                     /translation="MNSYLREPAVSGIFYPKNQKELTEDIESLFRDSNFGPGNLPPSS
                     NNERIYGMVSPHAGYMYSGAVAAHGYYELSSSKFESALILGPNHYGLGSSISLMDKGS
                     WETPLGKVEIDSEVANNIHQNCDIVSIDESAHSRDHCIEVQLPFLQYIKSEFKIVPII
                     LINQGKNTCKKLGSDIYESIKDRNFVPIASSDLTHYEANKLAHEKDNLLISAILSLDI
                     EKFYSVLISFNVTACGYGAIAAVMEISKRMGATKGKLLKYATSGDIAGDNKSVVGYSS
                     ILFV"
BASE COUNT          587 a          409 c          326 g          690 t
ORIGIN      
        1 cttgcagcat tatggttact tttcctatga aaatttaaac cttgatacgt gaatcaagtt
       61 cagccaggta ttacaccgtc ataatcaaat tcgactagaa tccatttgcc aggacctctg
      121 cctatttttg ctaatatttc ctcacttgaa tcgtttggta caagcgcaat aactgctcct
      181 cctttacccg caccagtcaa ttttgcacct agtgcgccgt tatcaagaca attttcaatc
      241 aatttttcaa tctctgggtg agatacccct agagtggaca ataatttatg attatcagta
      301 agtaagttac caagctctga ttcattacct tcattcatga aacttatcgc ctttttgcaa
      361 atcgctcgag cttttgatga aagatcatca aaagcactag aatttttttg cctgaattgc
      421 ctgacttgtg agacaacctc accagtggag tgctttatcc cactggtacc aataagcagc
      481 gtgaatttct tttttggtct taccttactg aatcctattt cgggctcaaa attcattatt
      541 ccaccaaatg ttgaaacata acaatctacg cctgaggagt ttgtatgtat attctgttcc
      601 attactcttg cagtttcata tatttgattt ttgtcgagat cagaaaacaa ggaataaagg
      661 gcagcaaccg tcgatacaca tgacgctgct gacgatccca atccctctcc atggggaatt
      721 tgtgaatcaa tttccaaatt aactcccaca ttaaccaaat ttttttcctt aaaaacatgt
      781 tttacacatt taaaaatcgg aaatagtgat attgcactgt tatcgtgtga cataataaag
      841 ctatcgttac tatttacagg tacacttaat gagttttctc cagattttat atttactcgc
      901 gatttgtcat tcaactgagc tgctacacga attcttctgt ttattgcagc tataatggcg
      961 gggttattgt agactacaaa atgttctcca aaaaggatta tttttgctgg agctgatgat
     1021 acagacctgt tagtataggt attcatacaa acaaaattga tgagtaaccg actactgact
     1081 tattatctcc tgctatatcc ccacttgtag catatttcaa caatttacct ttagttgctc
     1141 ccattctttt tgatatttcc ataactgcag caattgcacc atagccacat gctgttacat
     1201 taaacgaaat taatactgaa taaaattttt caatatctag tgaaagaatt gcagatatga
     1261 ggagattatc tttttcatgg gctagtttgt ttgcttcgta gtgtgtcagg tccgaagagg
     1321 ctatgggaac aaagtttcta tcctttattg attcataaat gtcagaaccg agttttttac
     1381 acgtattctt accttgatta atcagaatta ttggcacgat tttgaattca cttttaatat
     1441 attgaagaaa cggaagctgg acttcaatac aatgatctct tgaatgtgct gattcatcaa
     1501 tactgacaat atcacaattt tgatgaatgt tattggccac ctcagaatca atctctacct
     1561 ttccaagtgg agtttcccaa gaacctttat ccatcaatga tatgctgcta cccaaaccgt
     1621 aatgattggg gccaaggatt aacgctgatt cgaatttaga tgaagacagt tcgtagtatc
     1681 catgcgcagc tactgcccca gaatacatat atcctgcatg aggactgacc atgccgtaaa
     1741 ttctttcatt attacttgaa ggcggtaaat ttcctggccc gaaatttgaa tctctaaaca
     1801 atgattcaat gtcttccgtt agttcttttt ggttttttgg ataaaatatt ccagaaacag
     1861 caggttctct taaatacgaa ttcaagatat ctcttcgacc aatttggtct caaagtcatc
     1921 aattgatatc ttcatttcgt tatcagattt tattttaccc tgtttcttta agacttccct
     1981 cgtgagtaac cagtacactg ttgcaagtgc tt
//
LOCUS       DASPFX010000361         3733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1394567, whole genome shotgun sequence.
ACCESSION   DASPFX010000361 DASPFX010000000
VERSION     DASPFX010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3733
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1394567"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1396
                     /locus_tag="VD694_07715"
     CDS             <1..1396
                     /locus_tag="VD694_07715"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12631.1"
                     /translation="ILKSIDVLLQYRDIIGLESANKVLCVGTSAVREAKNGKYFVDQV
                     LKRTGFEVRILNGEEEAYYSYLGASMTTCIPNGLYFDLGGGSLELVYTEDFNIRKAQA
                     LPLGALRLTRTFANADGAFSKKDCDNMDQRILDTLPTKKSYGIGIDTLLVGAGGTLRA
                     LGRYDQKRSGFPFEKIHNYRLSSNTIDSLRKELSSLKPSEIASRGTFDSTRVETVVAG
                     IHVIHGIMKKFDFEEVVISGYGIREGILASFIQNPNTLENHNIDNLGKQIVRILSYQS
                     HKHDISNFGLDDMTRDMIYHRLLKDREVEILSYALYTLGKLPDSNKYYSLFYQVLDED
                     YPRLTYREQMILALSIIYSKKMRIGEDLFYKYSNLLKPQNLKSIQKIAVLLNLARIII
                     KTRSQIRTRLTDNQCINFTIIPTQKSFPTTLLRQVIEKTSKIFDIPVQYQIPDRINRL
                     KGSATNIISIKSQT"
     gene            1402..2109
                     /gene="tmk"
                     /locus_tag="VD694_07720"
     CDS             1402..2109
                     /gene="tmk"
                     /locus_tag="VD694_07720"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HXW12632.1"
                     /translation="MSYNKNDNAKGIPMKGKLIVVEGIDGSGKSTQLRLLEKWLISRN
                     IPVFFTEWNSSETVKQITKKGKKSGQLTPITFSLLHATDFADRYERNILPLLHAGYIV
                     LADRYVYTAYARDIVRGCNPNWVKKIYEFAVRPEIVFYFKVPIDIAVDRILSSRPRLK
                     YYEAGMDLNLSNDLYESYRIFQSRIIEQYESLSISENFTIVDGTMEIEESQRFLRSLV
                     MNLLPLNFAKNRRPNKP"
     gene            2106..2846
                     /gene="tmk"
                     /locus_tag="VD694_07725"
     CDS             2106..2846
                     /gene="tmk"
                     /locus_tag="VD694_07725"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HXW12633.1"
                     /translation="MNYRTIKSLKGKKLRKTIFYGHAIPYLENIEIKGRFIVIEGPDA
                     SGRSTQIELLSSKLEADGHAVLNAGLRRSELIGQGILEAKRNFVLGRRTISLFYAADF
                     ADQLENKIIPGLRAGHIVLSDRYIYTLMAREAVRGISSSWSRNLYGFALRPDIVFYLD
                     VDPNELVHRVFKKNSYLDYYESGTDLRLSDNMLESFVMYQKLLRKEFKRMQKRYNIVS
                     IDGNRSVSEINEDLQKRIDAYLQNLQNY"
     gene            2963..3490
                     /gene="sixA"
                     /locus_tag="VD694_07730"
     CDS             2963..3490
                     /gene="sixA"
                     /locus_tag="VD694_07730"
                     /inference="COORDINATES: protein motif:HMM:TIGR00249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0101006 - protein histidine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HXW12634.1"
                     /translation="MELFILRHGDAGQRSLSSDIIRPLTSAGKAEILENAKALKTIGL
                     KFDLVVTSPLKRAYDTAMIVSDVFNIGSKVQVWNELAPEGKRTDIYQKISQLREEYSV
                     LIVGHQPLLGEMVNDIIHKSKSNPCNFILKKGGIVRIRLLRKSNIPKGELKWLLTPRI
                     LRSIYKKNTKSIAKE"
BASE COUNT         1376 a          586 c          695 g         1076 t
ORIGIN      
        1 gatcctcaag agtatagacg ttctacttca atatcgtgat atcataggac ttgaatcagc
       61 aaataaggtt ctttgcgtag gtacaagtgc tgttcgggag gcaaaaaacg gtaaatattt
      121 tgtcgatcaa gttcttaaga gaactggatt tgaagtaagg attctcaatg gggaggaaga
      181 agcttattat tcttatctgg gcgcttccat gacgacctgt ataccaaatg gcctgtactt
      241 tgaccttgga ggaggaagtt tagaattagt ttatactgaa gactttaata taagaaaggc
      301 acaggccctt ccattaggag cgttaagatt aacaagaaca tttgctaatg cagatggtgc
      361 tttctcaaaa aaggattgcg acaatatgga ccaaagaatt ttggacacac ttccaaccaa
      421 gaaaagctat ggaatcggaa tagatacatt acttgtagga gctggcggaa cgttacgggc
      481 tctgggaaga tacgatcaaa agcgttcagg atttccattt gaaaagatac ataattacag
      541 attatcatca aacactattg attctcttcg caaggaactg agctcattaa agcccagtga
      601 aattgctagt cgaggaacat ttgattccac tagagttgaa acagttgttg ccggcataca
      661 tgtaattcat ggtattatga agaaatttga ctttgaagaa gttgttataa gtggatatgg
      721 catacgtgaa ggcattcttg cttcctttat tcaaaatcct aacacactcg aaaatcataa
      781 tattgataat ctaggaaaac agattgtaag aatactttct tatcaatccc acaaacatga
      841 tatttcaaat tttgggcttg atgatatgac acgtgatatg atctatcata ggttattaaa
      901 agatagggaa gttgagatac tttcatatgc actctatact ttgggaaaac tacccgactc
      961 aaataagtac tacagtcttt tctatcaagt actggatgag gattaccctc gtctcactta
     1021 tagagaacaa atgatactag cattatcaat aatttactca aagaaaatga gaatcggtga
     1081 ggatctcttt tacaaatata gtaatttgtt aaaaccacag aatctaaaat ctattcaaaa
     1141 aatagcggta ttgctcaacc tagctaggat aatcataaag accagatctc agataaggac
     1201 aagattaaca gataatcaat gcataaactt caccattatt cctacacaga aatcatttcc
     1261 gactaccttg ttaagacaag taattgagaa aactagcaag atatttgaca ttccagtaca
     1321 atatcagata cccgaccgga tcaatcgact taagggctct gctacgaaca ttatttcaat
     1381 aaaatctcaa acttgatatc tatgtcttac aacaaaaacg ataatgcaaa aggtattccc
     1441 atgaaaggca agcttatagt tgttgaaggt attgatggct ccggaaaatc aacacaactt
     1501 agattactag agaaatggct aatttctaga aatataccag tattttttac tgaatggaat
     1561 tcatcagaga cagtcaaaca gattactaaa aaaggtaaga aaagtggtca gttgaccccg
     1621 attacattct ccttgctaca cgcaactgat tttgcggata ggtatgaaag gaatatccta
     1681 ccacttttac atgctggcta cattgttcta gctgatagat atgtctatac tgcgtacgct
     1741 agagacattg tcaggggatg caatcccaat tgggttaaaa aaatatatga atttgcggta
     1801 aggccggaga tcgtgttcta ttttaaagta cctatagata tagcggtaga tagaatactt
     1861 tccagtagac caagactaaa gtattatgaa gcaggtatgg atttgaactt gagtaatgat
     1921 ctttatgaga gttataggat cttccaaagt agaatcattg agcaatacga atccctgtcg
     1981 atctcggaga attttaccat agtagatggc acaatggaga tcgaagagtc acaaagattt
     2041 ttgagatctt tagtgatgaa cttattacca ttaaattttg caaagaatag aaggcctaac
     2101 aaaccatgaa ttatagaaca ataaaatcat tgaaaggtaa gaaactgaga aaaacaatat
     2161 tttacggaca tgctatccct tatttggaaa atatcgaaat aaaagggaga tttattgtaa
     2221 tagaaggtcc tgacgcatct ggtagaagta cacagattga attattatcg tcaaaacttg
     2281 aagctgacgg tcatgcggtg ttaaacgccg ggctaagacg ttctgaatta ataggccaag
     2341 gaatattaga agcaaaaaga aattttgttt taggaagaag gactataagt ttattttatg
     2401 cagcagattt tgcagatcaa ttagaaaata aaattattcc tggattgaga gcaggacaca
     2461 ttgttctttc cgacagatac atttatactc ttatggcaag ggaagcggta cgtggcataa
     2521 gtagctcatg gtctagaaat ctctatggtt ttgctttgag accagacata gtgttttatc
     2581 tagatgttga tccaaatgaa ctagtacaca gagtattcaa aaagaattcc tacttggatt
     2641 attatgaatc gggtactgat cttagactat cagataacat gctagaatcg tttgtaatgt
     2701 atcaaaaatt gttaagaaaa gaatttaaac gaatgcaaaa acgatacaat atagtttcaa
     2761 tagacggtaa tagatcagta agcgaaatta atgaggatct tcaaaaaagg attgatgctt
     2821 atctgcaaaa tctacaaaat tactaacaaa ttagttaact aaacctctat ttttccattc
     2881 taattattgt tggaaaatta tttaacctga agttgatgaa agctagaaaa taatttattt
     2941 ggaagtatat caactaaatt taatggaatt attcattttg cgacatggcg atgctggaca
     3001 aagatcactt tcgagcgata taattcgtcc tttgacatct gccggaaaag ctgaaatact
     3061 tgaaaacgcc aaagcgctaa aaacaattgg attaaaattt gacctagttg ttaccagccc
     3121 tcttaaaagg gcatatgaca ccgctatgat agtatcagat gtctttaata ttggcagtaa
     3181 agttcaggta tggaatgaat tagctcctga aggaaaaagg acggatatat accagaaaat
     3241 atctcaactt cgagaggaat attcagtttt gattgttgga catcagccat tattgggaga
     3301 aatggttaat gacatcattc ataaatcaaa atctaaccca tgtaatttta tcctaaagaa
     3361 aggcggaatc gttagaataa gactccttag aaagagtaac atacctaaag gggaactcaa
     3421 atggttgtta actcctagaa tattaagaag catctataaa aagaatacca agtcaatagc
     3481 caaagaataa ataatttagg gagtcatagt ttctaatgtc aggacaaaaa tcaaagaata
     3541 atttgactga ttccaaagtt tcaatatcat taaaaaataa gaattctagg taaaaaacta
     3601 gtttcacctt caaatacggg atcaaaacct ggaatcaaat ttaaagaaag taaaaaaatc
     3661 tcaagatcaa tcaaaagaat tgaatcggag atgtcacata tacaaactca actgcaaaat
     3721 atagaaaatg aat
//
LOCUS       DASPFX010000362         2502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_91923, whole genome shotgun sequence.
ACCESSION   DASPFX010000362 DASPFX010000000
VERSION     DASPFX010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91923"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VD694_07735"
     CDS             complement(<1..298)
                     /locus_tag="VD694_07735"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjP-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HXW12635.1"
                     /translation="MNSESWINIALSDNTMACIKLIRSKRRKRMCITVDRQGISVLSS
                     MNEKIESIRNFVNSNNKWITKKTKFYLRLNESLENDPLQSDELMYRGNKYKIQFI"
     gene            complement(471..1610)
                     /locus_tag="VD694_07740"
     CDS             complement(471..1610)
                     /locus_tag="VD694_07740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HXW12636.1"
                     /translation="MNKDNISALLTGIAVVALIAGFAVYFNSPEMNQQSVGTINSNSK
                     DGISNVQLSMDKSQFKKAPEFEGITYYINSNGTKLSDLKGKVVLVDFWTYSCINCIRT
                     LPYLVDWNQKYSDKGLVIVGIHAPEFEFEKNIDNVKQAVMRFGIKYPVLLDNDHDTWN
                     AFHNSYWPRKYLVDAEGFIRYDHIGEGGYVETEIAIRNLLAERAGQQNLPLANVNQTS
                     LSISGSQSVDFNQINTPELYFGYQYARSELGNSEGFNPDKIASYTLPSSKIRPNVIYL
                     EGKWKNNADSMELVGNEGKIVLDYSAKSINIVAGGKGGITVKEFGKQNQSSNPYRGND
                     LDNEGKLTIDGQRLYNIGNYQDYGSRQVEIDASGPGFRIYTFTFG"
     gene            complement(1611..2363)
                     /locus_tag="VD694_07745"
     CDS             complement(1611..2363)
                     /locus_tag="VD694_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HXW12637.1"
                     /translation="MVDPGILISALAGVGSFFSPCILPILPAFISYLSGTTINEVQDS
                     SGQSLRLRRATRLNIFLNTVYFVLGFSLVFAVLGVFLNSVLMNVGIGFQNVLTSVGGL
                     VIIGFGVYLILSIRLRSLNFEKRFSSIPKFKTSYITSFVFGCAFAAGWTPCVGPILGS
                     TLTLAATAPGAAYNSLLAYSLGLGIPFLVTSLFFSQATIIIRKMVKHLKYFNPAMGIL
                     LIVLGILVFTNNLSILGNFPLANEIINIERGT"
BASE COUNT          806 a          483 c          387 g          826 t
ORIGIN      
        1 tgataaattg aatcttgtat ttattaccac gatacataag ttcatcactt tgaagaggat
       61 cattctctaa actttcattt aatctcaaat aaaattttgt ttttttcgta atccatttat
      121 tatttgaatt tacaaaattt cttattgatt caatcttttc attcattgaa gagagaacag
      181 atatcccttg gcgatctaca gttatacaca tgcgtttacg tcttttactt ctaattaatt
      241 tgatacatgc catagtgtta tcggaaagag caatatttat ccatgattca gagttcaaat
      301 taattagaca atgaattagc agttcaatta ctatttattt tttgataata accatggata
      361 cccagtacat ggtattttga gtttagagtt gtaccaatat gctatcatta cgtctttgtg
      421 taccattatg tccgtgaatt agatgttatt gacttatgaa aaaaattcat tcacccaaaa
      481 gtgaatgtat agattctaaa accaggtcca cttgcatcaa tctcaacctg acgggatccg
      541 tagtcttggt aatttccaat gttgtaaagt ctctgtccat ctatggttaa cttaccctca
      601 ttatccagat catttcctct ataaggattg cttgactgat tctgttttcc aaactccttg
      661 acagttatcc ccccttttcc acccgcaact atgttgatag atttagctga ataatcgaga
      721 acgattttgc cctcattacc aactaattcc atgctatctg cattgttttt ccactttccc
      781 tcaagataaa tgacattggg cctaatctta gaagatggaa gagtataact tgcaatttta
      841 tctggattga acccttcact gtttccaagt tcagacctcg cgtattggta accaaagtat
      901 aattcaggag tattgatttg attgaaatca actgattgtg acccagagat gcttagactg
      961 gtctgattaa catttgctag aggaagattc tgttgacctg ctcgttctgc cagcaaattg
     1021 cgaatagcaa tttcagtttc cacataccct ccctctccaa tgtgatcgta tcggataaat
     1081 ccttctgcgt ctacaaggta ttttcgtggc caataactat tatgaaaagc gttccaagta
     1141 tcgtgatcat tatccaacaa aacaggatat tttattccaa atctcattac agcttgctta
     1201 acattatcta tgtttttttc aaactcgaat tcaggcgcat gaatacctac aataactaat
     1261 cccttgtcag aatatttttg gttccaatca acaagatatg gtaacgttct tatacagttt
     1321 atacaactat aggtccaaaa atcaaccaat actactttcc cctttaaatc tgataatttg
     1381 gttccattcg aattgatata atatgtaata ccttcgaatt caggtgcttt tttgaattgg
     1441 gatttatcca tggataattg tacgtttgat attccgtcct tgctatttga attaatagtc
     1501 ccaactgact gctgattcat ctcgggacta ttaaagtaaa ccgcaaatcc ggcaattagg
     1561 gctaccaccg cgattccggt caacaacgca ctgatgttgt ccttattcaa ttatgttccc
     1621 ctttcaatat taattatctc attagcaaga gggaaattac ctaggatgct aagattattg
     1681 gtaaatacta atattccaag aactatcagc aagatcccca ttgctggatt aaagtatttc
     1741 aaatgtttta ccatcttcct aataatgatt gtagcctgcg aaaagaacaa acttgttact
     1801 aaaaatggaa tcccaagacc cagggagtag gccaacaatg aattgtatgc tgcgcctgga
     1861 gctgtagcgg ctaatgtaag ggtactaccc aaaataggac ccacacaagg agtccatcct
     1921 gctgcgaatg cgcatccaaa tacaaatgat gtaatgtaac tggtcttaaa tttaggaata
     1981 gaagaaaacc ttttttcaaa attcaggctt cttaacctta ttgaaagtat tagataaacg
     2041 ccgaatccaa ttatgacaag tcctcctact gatgtcagca cattttgaaa tcctattcca
     2101 acattcatta acacgctatt tagaaataca cctagtactg caaaaacaag cgaaaatcct
     2161 aaaacaaaat aaactgtatt taaaaatatg tttaatctgg tcgctcttct taatctaagt
     2221 gactgtcctg atgaatcctg aacttcatta attgtggttc ctgatagata cgaaatgaat
     2281 gcaggtaaaa ttggcaaaat acatggagaa aaaaaagatc ctacacctgc aagggcagag
     2341 attagtatac caggatcgac catgcaaatg gtgactttat tttgaattaa tacttttgtc
     2401 catattggca ccaactctat tacaaattaa aaatcaagat aatctttgtc aaaatgcaaa
     2461 cgtgagttcc taattaaaaa aaattagaga ttgaatgaaa at
//
LOCUS       DASPFX010000363         2952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_376450, whole genome shotgun sequence.
ACCESSION   DASPFX010000363 DASPFX010000000
VERSION     DASPFX010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376450"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1783
                     /locus_tag="VD694_07750"
     CDS             <1..1783
                     /locus_tag="VD694_07750"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HXW12638.1"
                     /translation="AIVAAGVLFSILTYQYYIRNSSEVQRIAVEHIQNTTLVKVSDLT
                     QILKNKLDLVTVNLEMLSSSQEILEQRLELAKILMNSAQKTTTNFVDFYSWVDSNGTR
                     IWSSTNLNDPSGEKIKEFSKVAQTYFDKVKDTQVPAYSNTIKFADGKSGILILYPIID
                     TQNSNASQNNTNQFRGAILSGISSETLDSFIQSQLPPLVSANLSLVDSSGKMIIAGIP
                     DFSGTSVFDKKFDSMTGRPFSDKIGGKNVISAFRTAVNNPTVGTTDITLNGREFTVSF
                     APVISNGIHYFTIILILPHTLASSLDDLVSQQRNFAIMAMLIILASALGIFFVITYWN
                     KGLRKVVYIQTKELQETTKKLTYHDKLQKEFIDIAAHEFRTPVQSVLISAEMIHKNLK
                     NFDQYFDRIIRNAKRLEKLTEDVLDVSRIEGKNLQLTKSYFDLNQTIKQVIEDHQKEA
                     LEKNIKISFESKTDVTNTIHADEARLQQVIDNLVSNAINFTNNGNITISSFRGKEDAS
                     GKIDELDKESVVVEIKDTGSGINPEMMPRLFEKFATRSISGTGLGLYISKSIIDSHGG
                     KIWAHNNKDGKGATFTFMLPADKKSKK"
     gene            1937..2299
                     /locus_tag="VD694_07755"
     CDS             1937..2299
                     /locus_tag="VD694_07755"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12639.1"
                     /translation="MKRTLVMIVDDEIDIIGLFTEILTLNGISVRPFTNPEEALDDFK
                     QNHGNYRLIISDVRMGPMSGVDFIVRAREIDADVNVILMTAFEMERSQLKEINTDEFF
                     NKPIGMKDLVRVVKKSIE"
     gene            complement(2342..2710)
                     /locus_tag="VD694_07760"
     CDS             complement(2342..2710)
                     /locus_tag="VD694_07760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12640.1"
                     /translation="MFKHDVSGYNLMRRVCSGHSNSTEDNCSTQYDDYMAKNSTKPIR
                     LSHLIAFNIKENDQIISGILTIEFEYDSSDGRIKYRDMRYSDPRLIKHIEGNPRVMKN
                     IDSFLRKNLLEAEYGFKLMS"
BASE COUNT         1032 a          492 c          557 g          871 t
ORIGIN      
        1 tgccattgtt gcagcaggcg tactattttc cattctaact taccaatatt acattagaaa
       61 ttcttcggag gttcagcgca ttgctgtgga acacattcag aatacaacgc tagtcaaagt
      121 ttcagatctt actcaaatac tcaagaataa gcttgacttg gttaccgtaa atcttgaaat
      181 gctttcttcc tctcaagaaa tattggaaca acgtttagaa ttagccaaga tattaatgaa
      241 ttccgctcaa aaaaccacca caaattttgt agatttttac agttgggtgg acagtaatgg
      301 aacacgtatt tggtcgagca caaatttgaa tgatccctca ggcgagaaaa tcaaagaatt
      361 ttctaaagta gctcagacgt actttgataa ggttaaggat actcaggttc ctgcttatag
      421 taacaccata aagtttgcag acggtaaatc tggaatattg attctatatc ccataatcga
      481 tacgcagaat agcaatgctt ctcaaaacaa tactaatcaa tttaggggtg cgattttatc
      541 cggaataagc tctgaaacgc tagatagttt tattcaaagt caactccctc ctttggtttc
      601 agcaaatcta tcccttgttg attcaagtgg aaagatgatt attgcgggaa taccagactt
      661 tagtggaaca agtgtgtttg acaaaaagtt tgactcgatg acaggacgac cttttagcga
      721 caaaattggt ggaaaaaacg taataagcgc atttagaacg gcggtgaata atccgacagt
      781 aggtacaact gacataacat tgaacgggcg agagtttaca gtatcatttg ctccagtcat
      841 atcaaacggt atacactatt ttaccattat tttgattcta cctcatacat tagcatcttc
      901 attagatgac cttgtatccc aacaaagaaa ttttgccata atggcaatgt tgattattct
      961 ggcaagtgct ctgggaattt tttttgtaat cacttattgg aacaagggat taagaaaagt
     1021 tgtgtatata cagacaaagg agttacaaga aacaaccaag aaattgacat atcatgacaa
     1081 actacaaaag gaattcatag acattgcggc gcacgaattt agaactccag ttcaatcagt
     1141 tctaatttct gcagagatga ttcataaaaa tctcaaaaat tttgatcagt actttgacag
     1201 gataattaga aatgcaaaga gactagaaaa attaactgaa gacgtactgg atgtatccag
     1261 aattgagggg aaaaatcttc aattaaccaa gtcatatttt gatttgaacc aaacaataaa
     1321 acaagtaatt gaggatcacc aaaaagaggc actggaaaaa aatataaaga tatcttttga
     1381 atccaaaact gacgttacta atacaataca cgcagacgaa gcaaggttac aacaggttat
     1441 agacaatctt gtgtcaaatg caattaactt taccaataat gggaatataa caatatcatc
     1501 attcagaggc aaggaagatg ctagtggaaa aattgatgaa ttggataaag aatcagtagt
     1561 agtagaaata aaggacacag gatcaggaat taatcctgaa atgatgccca gactgtttga
     1621 aaaatttgcg acaagatcaa tatctggaac tggcttgggc ctgtatatat ccaaaagtat
     1681 tattgacagt catgggggaa aaatatgggc acataataat aaagatggaa aaggtgcaac
     1741 ttttaccttt atgcttcctg cggacaagaa aagcaaaaag tagaatttca gttctaatat
     1801 taaaggagag gtactggagt ccacatacat tactttgtct cagtcgaccc aaagattaac
     1861 tgctcaagag gaattctgct gtaaattgtg agtgttaggg gaaattattt tattcggagt
     1921 taacatacca gtcttgttga aacgtaccct tgtaatgata gtagacgatg aaatagacat
     1981 tatcggttta ttcaccgaaa ttttgacatt aaatggcatt agtgtcaggc catttacaaa
     2041 tcctgaggag gccctcgatg actttaaaca gaatcacggc aattatagac taataatttc
     2101 agatgtaaga atgggcccaa tgtcaggagt tgatttcatc gtaagggcca gggaaattga
     2161 cgccgatgtt aatgtcatat taatgacggc ctttgaaatg gaacgaagcc aacttaaaga
     2221 gatcaataca gatgaatttt tcaacaaacc cattgggatg aaagacttgg tacgagtggt
     2281 caagaaatcc attgaataac tacttttact attgatttta tggaatcaat gatggataca
     2341 attatgacat taatttgaat ccatattcag cttcaagcaa attctttctc agaaatgaat
     2401 cgatattttt cataactcgc ggatttcctt caatatgttt tatcagccta ggatcgctgt
     2461 aacgcatatc ccgatattta atacggccat cagatgaatc atattcaaat tctatggtca
     2521 atattccaga aattatctga tcgttttcct tgatattaaa ggcaatcaaa tgactaagtc
     2581 taattggttt agtggaattt ttggccatgt aatcatcata ttgagtagag caattatctt
     2641 cggtactatt cgagtgacct gaacacactc tacgcattaa attgtacccg ctcacatcgt
     2701 gtttaaacat tactggaata ccaattaaaa ttggaattca tctggcaaag tcattgcttc
     2761 acccagaatt tcaatttaca aatcataaca tgtataaata ttttgttgtg cacacggcat
     2821 tcgtggttca atcattactt agtagtgagg agaagccgga catttatgat ttgcgagttg
     2881 ctgatggaat taaggagatg ttaatgatgc gaggatttac cagagacaag attttaaatt
     2941 ctaaggtgag ta
//
LOCUS       DASPFX010000364         7263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_947694, whole genome shotgun sequence.
ACCESSION   DASPFX010000364 DASPFX010000000
VERSION     DASPFX010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7263
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_947694"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VD694_07765"
     CDS             <1..403
                     /locus_tag="VD694_07765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12641.1"
                     /translation="KKPNRHQKNDALPLNTFGMAAHYSPNPKSKEMGVDLPFDLNTGE
                     MLPEVFNRWLAWDPVRMIEKYCENLKKLKLIFIDCGTKDEFNLHWGARMLHSKLKMMN
                     IRHFYEEFDDGHMSISYRYDISLPKVYSALS"
     gene            complement(511..1119)
                     /locus_tag="VD694_07770"
     CDS             complement(511..1119)
                     /locus_tag="VD694_07770"
                     /inference="COORDINATES: protein motif:HMM:NF024922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HXW12642.1"
                     /translation="MNRNALNADETSNLLYKDGTAYYYGIIMPYTEANRYFDLLLKNI
                     LWKNDEVNILGKHIITNRKVAWYGDSDYLYTYSNSTRKALFWTIELAELKRLVEQVSG
                     ACFNSCFLNLYHNGTEGLGWHSDDERSLGTNAPIASLSFGAERKFSFKHKQTKRMASL
                     VLEHGSLLVMKDVTQMYWLHSLPKSNKITQARINLTFRVMVQ"
     gene            complement(1348..2070)
                     /locus_tag="VD694_07775"
     CDS             complement(1348..2070)
                     /locus_tag="VD694_07775"
                     /inference="COORDINATES: protein motif:HMM:NF021385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HXW12643.1"
                     /translation="MNPIDVVREKISEIDWQLVSEEMNAKGYSLIPRFLNDQYCKERI
                     DAYGNEDIYRKTITMERHSLGLGEYKYFKYPLPDLIHTIREAVYPKLVPIANMWMKML
                     NIKRYYPDEFDELQKLCHQNNQLKPTVLILKYGKGGYNTLHQDLYGDIFFPFQLVFFL
                     NEVDDDYAGGEFVLTQQIPRAQSKAIVLKPCKGGMLIITTNFRPMNGSKGYYRSQMRH
                     CVSEVRRGDRYVLGIIFHDALT"
     gene            complement(2077..2547)
                     /locus_tag="VD694_07780"
     CDS             complement(2077..2547)
                     /locus_tag="VD694_07780"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HXW12644.1"
                     /translation="MHEDDAKHLNHDAKKLSSIKGTKKKKMKLQISSQMASMSNKAAR
                     ISANKPIRNSDVYDLLLKIPAGKVSTYGDLARALGNPSASRAIGRILGENPNPIKVPC
                     HRIVMSNGRVGGYAYGTAKKRQLLEKEGVSFINGTVKNFNNFRVYPQSNIKDRD"
     gene            2645..3208
                     /locus_tag="VD694_07785"
     CDS             2645..3208
                     /locus_tag="VD694_07785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12645.1"
                     /translation="MAHNLIVRGFDDQVHEKLGEIANQRGVSINSIVKDAVNVWLKKQ
                     QSEVLRKHYLVIYSDDESMMRLLKSMDKLAMEGNLFRCFFGPPRNPSIELLSKLKWYD
                     GIVKPYPFSFATQSKDEQHGLSVKQQQQIQAQAQIQVQSQKNIIHSEIKDLIELFEIH
                     DQIFILKGDEVYKLHVTKENVHKLFLS"
     gene            complement(3231..3791)
                     /locus_tag="VD694_07790"
     CDS             complement(3231..3791)
                     /locus_tag="VD694_07790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12646.1"
                     /translation="MLIDNISTRLINIDTGISRYEQFNNDVIICLAILFTFTFTGLII
                     TTVSLADAQEQQQQILPETTISNFTLNIDVLGVNSETRNSTISIVGPEDETLTSNTTI
                     DLFSKAQQDFASESNPVALTIPININSSLLHDGDELKACLTMVDTNKVDCELTVITQY
                     NLEGFLKSVQLEAGGNIEQQIRDLPK"
     gene            4362..4787
                     /locus_tag="VD694_07795"
     CDS             4362..4787
                     /locus_tag="VD694_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12647.1"
                     /translation="MCDNRDVPKNTDSEETHEEIVLDTTKNNILTLMDNFIEQILQIR
                     RTLLGVSICALILSPIAIGLSIFLIRHPSFFSILEIQNEFGAILGFLLVAMISISSIW
                     FITGTREYRKIGSWSKRYKEFMSEKEQIDRKLASKYGYR"
     gene            complement(5039..5293)
                     /locus_tag="VD694_07800"
     CDS             complement(5039..5293)
                     /locus_tag="VD694_07800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12648.1"
                     /translation="MNICGSEVLMPISARTCSCKEKNGKRVAYTLIDSYHGLCIDKKD
                     IIISELEACITLLKYSTDEADRSTIKREIVQLRTMLDLLS"
     gene            5654..6478
                     /locus_tag="VD694_07805"
     CDS             5654..6478
                     /locus_tag="VD694_07805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12649.1"
                     /translation="MLRSKIAIFLVFTISAYCLISYLSPHVTYATTNINTNISNIPTA
                     ETVHSLESMKVPPSVGTFVILIPNEAHENWSDEKHKLITDRNAYYVPTNLIIPKGTGI
                     LFLDADAPWDTPHPHTIELQDAAGNAVYSTDQLDYTNSSKPTVLQNPGTYGIVDKSYD
                     TKEAKITVLENETSSGNLILGGFYTPSNQVENTEDNDGVSHPGSLQYYKEAFNNDGFD
                     ILSEYNFTFATCDYCPGGFWPDNKSGEHTLLIYSTQQPLSDAIEKLGKLVKDNVYI"
     gene            6754..>7263
                     /locus_tag="VD694_07810"
     CDS             6754..>7263
                     /locus_tag="VD694_07810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12650.1"
                     /translation="MKHNTAFGFTFSTPCLLFALVLLLLSIIPSAKIISSPIPVMASV
                     EDNQESDDNDNEENTRDEDDEDDGNSGDDIDLDEMNLLQICCAWSDKISDGVLEYKIS
                     DGGDEDSKQSVRNAIQDWDLLIDNLIFVEKQDDSEADVEIVFSDGDEDANDEEFDYKD
                     PIAAGKTEFR"
BASE COUNT         2311 a         1291 c         1220 g         2441 t
ORIGIN      
        1 gaaaaaacct aatcgccatc agaaaaatga tgcgctccca ttgaatactt ttggaatggc
       61 agcacattat tcaccaaatc ctaaatcaaa agaaatgggc gtggatttac cctttgatct
      121 caatacaggt gagatgttac cagaagtatt taatcgatgg cttgcttggg atccagtgag
      181 aatgattgaa aaatattgtg agaacttgaa aaagcttaaa cttattttca ttgattgtgg
      241 caccaaagat gaatttaatc ttcattgggg cgcaagaatg cttcactcaa aactaaaaat
      301 gatgaatatt aggcattttt atgaagagtt tgatgacggt catatgagta taagctacag
      361 gtatgacatt tctcttccta aagtttattc agcattatcg taaaaacgac tataatagta
      421 gtagtttcat cgtttttaat ctctcattaa agacctctga attcagtctt gccattgcta
      481 ctttatagtt attaacttta aacatgcaat tcattgcacc atcactcgaa aagtcaagtt
      541 tattcttgct tgagtgatct tattagactt aggcaagcta tgcaaccaat acatctgtgt
      601 gacatctttc ataacaagca aactgccatg ttcaagtaca agtgatgcca ttcgttttgt
      661 ttgtttatgc ttgaatgaaa actttcgttc tgctccaaag cttagtgatg caataggagc
      721 attcgttcct aatgatcttt catcatcact gtgccagcct aaaccttcag ttccgttatg
      781 atacaagttt agaaaacaag aattgaagca tgctcctgaa acttgttcaa ctaaacgctt
      841 aagctctgca agttctatag tccaaaataa tgctttcctt gttgaatttg aataagtata
      901 caagtaatca gagtcaccat accatgctac ctttcgattt gtaatgatat gtttaccaag
      961 aatattgact tcatcgtttt tccatagaat atttttcaat aataaatcaa aatatctatt
     1021 tgcctctgtg tacggcataa ttatcccata ataatatgct gttccatctt tgtacagaag
     1081 attggatgtt tcgtccgcat taagcgcatt tcgattcatt atgatcatta ttgagaggtc
     1141 aatactatct agaaaggatc cgtgaaatat tgcttcctat tctgacaaaa aaagaatgta
     1201 catattttct tttttcattt catctagttt actaacatac cgcatttttc agatttgcat
     1261 gattcaatcg ggagaatctc attttcgttg cttcatcttt tttgtttcta ttacttttaa
     1321 tcacatcttg ttgttttgtg catgcaacta ggttaaagca tcatggaaaa taattccaag
     1381 aacatatcta tctcccctac gaacttcgct tacgcagtgt ctcatttgtg aacggtaata
     1441 acctttgctc ccattcatag gcctaaaatt tgtagtaatt atcaacatcc cgcctttaca
     1501 cggtttcaat acaatagctt ttgactgtgc tcttggaatt tgttgagtta atacaaattc
     1561 tccaccagca taatcatcat caacctcatt taaaaagaaa accaattgga atggaaagaa
     1621 aatgtctcca taaagatcct ggtgcagtgt attataacct ccttttccat attttagaat
     1681 gaggacggta ggttttaatt gattattttg atggcataac ttctgaagtt catcaaactc
     1741 gtccggataa tatcttttta tgtttaacat cttcatccac atgttcgcta ttggtacaag
     1801 ttttggataa actgcttctc tgatagtgtg gattagatcc ggtaacggat atttgaaata
     1861 tttgtattcg cctaatccaa gactatgcct ttccattgta atggttttgc gatatatatc
     1921 ttcgttacca tatgcgtcta tgcgttcctt gcagtattga tcattaagaa atcgcggaat
     1981 taagctgtac ccttttgcat tcatttcttc ggatactaac tgccagtcaa tctctgaaat
     2041 cttctcccgt actacgtcga tgggattcaa taatttctaa tctctgtctt tgatgttgct
     2101 ctgcgggtag actctaaaat tattaaaatt cttaactgtt ccgttgataa atgatacacc
     2161 ctctttctca agtaattgtc ttttcttggc agttccatag gcataacctc ctacgcgacc
     2221 attggacata actattctgt ggcaaggcac cttaatggga tttggatttt cgccaagtat
     2281 ccgacctatc gcccttgacg ccgaaggatt tccaagtgcc cttgctagat ccccataggt
     2341 agaaaccttt cctgcaggta tttttagaag aaggtcatat acatcgctat ttcttatcgg
     2401 cttattagca ctgatcctag ccgctttatt tgacatcgag gccatttgag atgatatttg
     2461 caacttcatt ttcttcttct ttgttccttt gatcgaagaa agttttttcg cgtcatgatt
     2521 caagtgcttc gcatcatcct catgcatatc atatgatacc atgatagcgt tatataagtg
     2581 tatttgcgct ttgctatctt gatagcagtg tctataaata cttgtcaaga aaatagtcta
     2641 tatattggcg cataatctca tcgttagagg tttcgacgat caagttcatg agaaactagg
     2701 agagatagca aatcaaaggg gagtttctat aaattcaata gtaaaagatg ctgtgaatgt
     2761 atggctaaag aagcagcaat cagaagtact tagaaagcat tatctagtaa tctattcaga
     2821 tgatgaatcc atgatgcggt tactaaaatc aatggataaa cttgcaatgg aaggtaactt
     2881 gtttagatgt ttctttggac cgccacgcaa tccatctatc gaacttttgt ctaaacttaa
     2941 gtggtatgac ggtatagtaa aaccttatcc tttttctttt gcgacacaat ctaaggatga
     3001 acaacacgga ctatcagtta aacagcaaca gcaaatacaa gctcaagctc aaatccaagt
     3061 tcaaagtcag aaaaacataa ttcattcaga gataaaagat ctgatagagt tattcgaaat
     3121 tcatgatcaa attttcatac taaaaggaga cgaagtatac aaactccatg taacaaaaga
     3181 aaatgttcac aagttatttt tgagctaggc ctatctactt taaggatgtt ctatttaggt
     3241 agatccctta tttgttgttc tatgtttcct ccagcctcaa gttggactga cttgaggaat
     3301 ccttccaaat tatactgtgt aattactgtc aattcacaat cgaccttatt tgtatctacc
     3361 attgtaagac aagcctttaa ctcatctcca tcgtgtaaca agctagaatt tatgttgata
     3421 ggaatcgtca aagcaactgg gttactttca ctggcaaaat cctgttgagc tttggagaac
     3481 aaatcaatag ttgtattact tgttagcgtt tcgtcttctg gaccaactat tgatattgtg
     3541 gaatttctgg tttcactgtt aactcctaac acgtcgatgt taagtgtaaa attgcttatc
     3601 gttgtttctg gcagaatttg ctgctgctgt tcttgtgcat ctgctagact cactgtagta
     3661 ataatcaatc ctgtaaatgt aaaggtaaaa agtatcgcca aacatattat aacatcattg
     3721 ttaaattgtt catatcttga tatgccagta tcgatgttta tcaaccgtgt acttatatta
     3781 tctattaaca ccttatatta tcattctaaa tagactacgt atgtatgttt ctttgtattt
     3841 actttatatt ctacttacct acctttaaat taaatatgcc agaatttgcc acgcttatct
     3901 caaacttgca tataatacaa atattacaag ccttattccg attcaaaata tagctttttt
     3961 ttgatatgaa ttgtgcggcc atgatctaaa cgaaggctct tttaaatgct ctcatgaatt
     4021 agatgtatat atcattattc ccttcaaatt agccagcgtc accaatatga cctcccatct
     4081 aattgactct gtatccaact agctaatcaa acatgtagta tatctgtcaa aatgtgaact
     4141 aacatggaaa ctactgtaat atcaagaata agaaaaacca agataattat gttggtgtat
     4201 tttttgtatc ttcaatatgt caatgtaaat aaatgttata aaatagcgtc attttttgta
     4261 aagtgtgtaa aaatgatctc tattcatagt atgatcaaca ttcgctaact atgttcatca
     4321 ttatataaat agtcaacaat atcagatatt cgttatcact aatgtgtgac aatcgtgatg
     4381 tacctaaaaa tactgactcc gaagaaactc atgaagagat cgtattagat actactaaaa
     4441 ataacatttt aacattgatg gataatttca ttgaacaaat actccagatt aggagaactc
     4501 ttctcggagt ttcgatttgc gcattaatac tttctccaat tgcaatagga ctatctatat
     4561 tcttgataag acatccctct tttttttcta tattagaaat ccaaaatgaa tttggagcta
     4621 tattgggttt tttacttgta gcgatgatca gtatatcttc catatggttt attactggaa
     4681 caagggagta cagaaaaatt ggctcttgga gcaaacgtta taaagaattc atgtcagaga
     4741 aagaacagat tgacagaaaa ctcgcatcca agtatggata tagataagaa taggttttca
     4801 ttttttgctt atcttttgtg atattgtaga acaaattgtt agatacgaaa tcaattcatt
     4861 accttttaaa ttataggttc cggtttcttt ttttcttcat caaatctctt tacgagcttg
     4921 atgtaactta tgttaaaaga actagatctc gaaggtgtat aaagagagca gaagcgagaa
     4981 attatcataa ttgattatat atttgtatgc aatagaatat ccttaacagg taacgaatct
     5041 aggataaaag atctaacata gtccttaatt gtactatctc tctcttgatt gttgaacgat
     5101 cggcctcatc ggtagaatac tttagaagtg ttatgcaagc ctccagttcc gatataatga
     5161 tatccttctt atcgatacat agcccgtgat atgaatcgat taatgtatat gccactctct
     5221 ttccattttt ctccttgcaa ctgcatgttc tagcagagat cggcattaat acttctgatc
     5281 cacatatatt catatcaata ttatagcacc tcgttatcga atcgataagt ctatagatct
     5341 attattacta tttgtagata tcggctgttg ttgacataac gaattgtggt tgaagttttt
     5401 caaatctatt tcatcatcct attcaagtgt gaagtacgta tataactata gactaactat
     5461 gttatctctt tcctactcat ttatacttcg tttcaagttt ctatgatagg aacagaaatg
     5521 tcatgatagg gggggaataa gaataactcc aatttttgtc aagaatataa atgaaccaga
     5581 ctgagctgca tatttcatag atagtatagt atactcaaaa gaaatatatt tttatgatgg
     5641 tcattaggat ctaatgctac ggtctaaaat agcaatattc ttagtattta cgatatcagc
     5701 ctattgtttg atttcctacc tatcgccaca tgtaacttat gcaaccacca acataaatac
     5761 aaatattagt aatattccta cggcagaaac cgttcattcg ttggaatcga tgaaagttcc
     5821 tccatctgtt ggaacatttg tgattctgat tcccaacgaa gcacacgaga attggtctga
     5881 cgagaagcac aagcttatca ccgataggaa tgcatactat gttccaacaa atcttataat
     5941 accaaaagga actggtatac tgtttctgga tgcagatgca ccatgggata ccccacaccc
     6001 ccataccatt gaattgcagg acgccgcagg taacgctgtt tatagtaccg accaattaga
     6061 ttatacaaat agctctaaac caacagtact tcaaaatcct ggaacatacg gaatagtcga
     6121 caaaagttat gataccaaag aagcaaaaat aacagttttg gagaatgaga catccagtgg
     6181 taatctaata ttaggaggat tttacactcc gagtaaccag gtagagaaca ctgaggataa
     6241 cgatggtgta tctcatcctg gttctctaca gtactataaa gaggccttta ataatgatgg
     6301 atttgatata ctgagtgagt ataattttac ctttgctaca tgtgattatt gtccgggagg
     6361 attttggcct gacaataaat ccggagaaca tacattgcta atttatagta cacaacaacc
     6421 tctctcagat gcaatagaga aactgggaaa gttggtcaaa gataatgtgt atatttgaga
     6481 ttaaacttga ctagcaatat caagtaatgt aaaatattag atcacgaaca tgatatagta
     6541 atctttttct gcaacgttca cacagattta ccttaattaa tgttattgta ttttatgtat
     6601 aatctacctt ctgataatgt ctttcttatc tttattcaac attaaatacg aatatttgct
     6661 ctctcagtat ccccggacga cgcctagaca tccttcaaat attaaaaaaa tatatctggg
     6721 attgacaaga agaatagaat tcacggaatg aatttgaagc ataacactgc ctttggtttc
     6781 actttttcta ctccgtgtct attgtttgcc ttagttctgc tattattatc cataattcct
     6841 tcagcaaaaa taatttcatc tccaatacca gtgatggcat cggtggagga taaccaagaa
     6901 tcggatgata atgataacga agagaacact agagatgagg atgatgagga tgacggtaat
     6961 agcggtgatg atattgatct tgatgaaatg aatctattgc agatatgttg tgcctggtca
     7021 gacaagattt cagatggggt actagaatac aaaataagtg atgggggaga tgaagatagc
     7081 aaacaatctg tacgaaatgc aatacaagac tgggatctat tgattgataa tttgattttt
     7141 gtggagaaac aagatgacag cgaggctgat gttgaaatag ttttctctga tggcgatgaa
     7201 gatgcaaacg acgaggaatt tgattataaa gaccctatag cagctggaaa aactgaattt
     7261 aga
//
LOCUS       DASPFX010000365         3570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1660567, whole genome shotgun sequence.
ACCESSION   DASPFX010000365 DASPFX010000000
VERSION     DASPFX010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1660567"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..1001)
                     /locus_tag="VD694_07815"
     CDS             complement(303..1001)
                     /locus_tag="VD694_07815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12651.1"
                     /translation="MRYYIKCKLNAKEKQRLTEAIKSGSIARGKIFYEGMQTALREGT
                     IDENNTVHFVEICYCLEGGLYPMAMEIPTLEEYFDSIVEVKDARLRDQCTMECEFCDC
                     TRSIKLPGKSLPDELDIPKEDLDNSEGEFLDIGRLKLNRGKQQEGIESLKKLLNNSNS
                     IAEPLFVGAAISGLFAIFHDGSDYFRIKNISDNKEARNILESFGLPVYGTVSSMKQTA
                     RNSLDKSDRRSNVV"
     gene            complement(1415..1627)
                     /locus_tag="VD694_07820"
     CDS             complement(1415..1627)
                     /locus_tag="VD694_07820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12652.1"
                     /translation="MSENIQKSSSLNKIVEDITHLKRKLESFERHVYNTKNEDVKKEY
                     YRALARILDAEKELCNFAMVFNDRTA"
     gene            complement(1691..1876)
                     /locus_tag="VD694_07825"
     CDS             complement(1691..1876)
                     /locus_tag="VD694_07825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12653.1"
                     /translation="MKKNGYLAIGIAAGIFTATLVGLSVASYLKSKGKLSRRINSLDN
                     TTTSLPRSAEQVEDMTV"
     gene            2048..2290
                     /locus_tag="VD694_07830"
     CDS             2048..2290
                     /locus_tag="VD694_07830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12654.1"
                     /translation="MACSLHTVGITLSEADAISKLKKLLESNCKIEKIQPPVMASDAE
                     VNIVTVTLLCPDGKKETIRAFREEAADLREFIRTHQ"
     gene            complement(2510..2929)
                     /locus_tag="VD694_07835"
     CDS             complement(2510..2929)
                     /locus_tag="VD694_07835"
                     /inference="COORDINATES: protein motif:HMM:NF018378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glucuronyl C5-epimerase family protein"
                     /protein_id="HXW12655.1"
                     /translation="MRSFLVDYDKVGVVSNEEDGRNGSSSTFIHLLAKPGFKKIYALN
                     GHTQSLLLLWEYYQQIQDPVVKMIFDSGVKSLRDNLWRFDTGSWSYYDQMENLASLDY
                     HKAQITQLKSLYDITGESVLKEYSDRFDKYRKSQPLG"
     gene            complement(2943..3386)
                     /locus_tag="VD694_07840"
     CDS             complement(2943..3386)
                     /locus_tag="VD694_07840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12656.1"
                     /translation="MRTADLHFRFLTVIFMLVLLSSGVCLSLSAHATIPEVPDENGVI
                     MYNYNGIRRQVYNPLFVAIGGLKYYSEYEDDGDQQSRQYFLNTADWLVNNAKEQGPNN
                     YTIWEYRFPWSSYGRISPPSASGLAQAQGLMVLILAHNLTGEIPY"
BASE COUNT         1046 a          743 c          614 g         1167 t
ORIGIN      
        1 tacacctaga aattcatttg aagataatga tactggtatg tcgtttactg gtggagttgt
       61 gctggtatta cgattgtact gggtacctaa agacgaatta tgatatccat atgctaccac
      121 gttttaactg aaaacaaggc acaagactga tgattgcaag ttattgaaat aggtaaccgt
      181 gttagctaaa aaaactccat tgtagagaat aggcgaagct gaacaataga ggtattattg
      241 gttccaccta catgaagtac cagcgaatga acgagacgag caatcatctg cctcaaataa
      301 tttcaaacaa cattcgaacg cctatcagat ttatcaagag aatttcttgc cgtttgcttc
      361 atagaagaaa cagttccgta taccggtagt ccgaaacttt ctagtatgtt acgtgcttcc
      421 ttattatctg aaatattttt tattctaaaa tagtcagagc catcatgaaa tattgcaaaa
      481 agaccagaaa tggctgcacc tacaaacaga ggttcagcga ttgagttgct attatttaac
      541 aactttttta gggattctat tccttcttgc tgttttcccc tgttaagttt taacctccct
      601 atatctaaaa attcgccttc agagttatcc aaatcctcct ttggaatatc cagttcgtct
      661 ggcaacgatt tacctgggag ctttatactc ctggtacaat cacagaactc acattccata
      721 gtacattggt ctcgcaggcg ggcgtccttt acctccacaa tactatcaaa gtattcttct
      781 aaggttggaa tttccattgc catggggtat aagcctcctt ccagacaata gcagatttca
      841 acaaaatgaa ctgtattatt ttcatctatt gtgccttctc ttaatgcagt ttgcatccct
      901 tcgtagaata ttttacctct agcaattgag ccagacttta tggcttctgt taaccgttgt
      961 ttttccttag cattcagttt gcatttgata tagtaccgca tactcctatc ccattatttt
     1021 tattgataac caaatacttg aatcattact attatgcatc tccctgccac taaataatta
     1081 aaataacttg cagtagaatt tagccggcca tccccaatta tttcgttgct cagtatcatt
     1141 gcaggcagcc caggatgatc tgtcctgctt aatacttgat aaaccttgtc tagtgctttg
     1201 tattcctttt gatacgaaaa aatattccca aaccatttca aagacatcta tttgcttaag
     1261 cttgaaagta tatttcacat cgcatttgtt attacatctt taaatcttaa tattctgtcg
     1321 caatttatct agaagcttaa tagcaataaa gctttccagt tccgttctga agatatctca
     1381 aaatacctat aaaaaaatag ttgtgtgggt aacctcatgc agtcctgtca ttgaatacca
     1441 tcgcgaaatt acatagttct ttttctgcgt ccaaaatcct ggccaaggct cgataatatt
     1501 ctttctttac atcttcgttt ttagtattgt aaacatgtct ttcaaatgac tctaacttcc
     1561 gtttaaggtg cgtaatgtcc tcaactatct tatttaatga agacgacttt tggatatttt
     1621 cagacatgac cagaccttct tacaagggcg aatgtggcct ttgtggcttg tttattgagc
     1681 atttagcatg ctacactgtc atatcctcta cttgctctgc tgatcgagga aggctagttg
     1741 tagtattgtc taaagaattt attctccttg ataacttccc tttggacttc aaataagatg
     1801 ccacgctgag accgactagg gttgctgtaa aaattcccgc tgctataccg attgccaaat
     1861 aaccattctt cttcattagg atcaactata caacatctaa aataaatatt gcaaaatgcc
     1921 gtagctgtag caagtatcag ttaaacgcgg cgaagctatc agcaaattga gggaagtgcg
     1981 gttaccaatc ttgaaatcta aatattttct aagttttact atttgggcta agtagcgatg
     2041 acttcatatg gcctgtagtc ttcataccgt aggaataaca ttgtcagagg ctgacgctat
     2101 atctaagtta aagaagctac ttgaatcaaa ttgcaaaata gaaaaaatac aaccacctgt
     2161 aatggcttct gatgccgaag taaatattgt aactgtaaca ttattatgtc ctgatggcaa
     2221 aaaggaaaca ataagagctt tcagagaaga agctgctgat ttgagggaat ttataagaac
     2281 ccatcaataa cttgtacgtt aggacataat ctattttttt tgacatctct tgtcaaccat
     2341 taattagcaa actgagtgat ttgcattgtg tttccgctat tttgatgtgt caccccattc
     2401 ttctcggatc ttctgagaga tttgtataac atggttttga atgtaagcct caaataataa
     2461 taattatgta gtatacatat gatgctacta ttcgctatag tctgaattgt caacccaaag
     2521 gttgactctt ccgatattta tcgaaccgat cactatactc cttcaatacg gattctcctg
     2581 ttatatcata caggcttttt agctgcgtta tctgtgcttt gtggtaatcc agcgatgcca
     2641 gattctccat ctgatcataa tatgaccagc ttccagtatc aaatctccac aggttatctc
     2701 tcagtgattt tactccacta tcaaatatca ttttcaccac aggatcctga atttgttgat
     2761 aatattccca aagcaacagc agtgattgag tatgaccatt caatgcgtag atttttttaa
     2821 agcccggttt tgcgaggaga tgtataaaag tagaggagct gccgtttcta ccatcctctt
     2881 cgttactaac tactcctact ttatcatagt caaccaaaaa tgaacgcatg gctttatttg
     2941 cttcaataag gtatttctcc agtcaaattg tgggcaagta taagcaccat tagcccctgt
     3001 gcctgcgcta atcctgaagc agaaggggga gaaatccgcc cgtaagaact ccatgggaag
     3061 cgatattccc atatagtgta attattgggg ccttgctctt ttgcattatt aacaagccaa
     3121 tctgctgtgt ttaagaaata ctgtctagat tgttggtcgc catcatcttc atattctgaa
     3181 tagtatttga gtcctccaat tgctacgaat agcggattat acacttgacg ccgaatgccg
     3241 ttataattgt acataataac tccgttttca tccgggacct ctgggattgt agcatgcgca
     3301 ctaagggaga ggcacactcc tgatgataac agtaccaaca tgaatatcac ggtcagaaac
     3361 ctaaaatgca gatctgcagt acgcatgtaa tattatcgac ccacaggtgc tatctctcct
     3421 aggtacccta attctctgct attgtatatc gtagtctgaa atcacagcta gtgtctacct
     3481 catcgtacaa atcgcccgct tctccaacag attgcgagca ttcgtcatgc cgacttattc
     3541 caaaattatt ctcagcattg tattccttag
//
LOCUS       DASPFX010000366         2525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_380366, whole genome shotgun sequence.
ACCESSION   DASPFX010000366 DASPFX010000000
VERSION     DASPFX010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380366"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(834..1403)
                     /locus_tag="VD694_07845"
     CDS             complement(834..1403)
                     /locus_tag="VD694_07845"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HXW12657.1"
                     /translation="MAKIALIVGSVRRERQGIKVARWMEEKLKSRNHTVFFIDPLELN
                     LPLLDKMYKEMTDPSEKMKSLQSKINDAEGYLAVTPEYNVGTSGAMKNTLDYFLEEYF
                     FKPSAIVSYSPGMFGGINAAQQLRLIFAELGAPSISSSFSIPRLHKVFSEDGKLIDEA
                     YDKRVLKFLAEFEWYIEAFKNQRAKGTPY"
     gene            1586..1846
                     /locus_tag="VD694_07850"
     CDS             1586..1846
                     /locus_tag="VD694_07850"
                     /inference="COORDINATES: protein motif:HMM:NF022833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2798 domain-containing protein"
                     /protein_id="HXW12658.1"
                     /translation="MNNGKKLNKLSRKYYTLVFGVIMGFIMSVLTSLAVTIINIGIIH
                     NFFEMWSGIFLTTFAIGFPMTIMITPFVKNITDRITISEAAK"
     gene            1932..2267
                     /locus_tag="VD694_07855"
     CDS             1932..2267
                     /locus_tag="VD694_07855"
                     /inference="COORDINATES: protein motif:HMM:NF025577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4326 domain-containing protein"
                     /protein_id="HXW12659.1"
                     /translation="MTTRIVNVRDYKPYSKYWTNPPTSPYVYIGRNVRFQIPFKSKWH
                     NPYAIKKTNGKEGPGSREKAIRQYKEYILNKPELLRLIPIELKDKTLGCWCKPNKCRG
                     DVLVELADK"
     gene            2334..>2525
                     /locus_tag="VD694_07860"
     CDS             2334..>2525
                     /locus_tag="VD694_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12660.1"
                     /translation="MGKQRIRILIADDNKDVNILIAATLVLKGYEVYKTYSANECISK
                     LEEYEGKVNVLLLNGAIAAD"
BASE COUNT          806 a          410 c          445 g          864 t
ORIGIN      
        1 atttagataa aactttttct tatgatctaa tacctttgca tactatttcg agctatcctt
       61 ttgaattgtt caatccggtt atgtcgtcaa gtctctcgtt tagctttgtc tcttttcttt
      121 tgattgtttc tattgtttgc tctgaacctg caagacttgg atcattgaga accttattat
      181 ttatctcatc ctgttggcag ctaaggttga ctatttaatg ctagttttca ctaattctaa
      241 ttcttataaa agagacatat tttatttgga atgtatgtct aatcccaatc aaaatgttgg
      301 tagctatctt attcaaagac tatatgacta tggaatacgt catgtctttg gtgtgcctgg
      361 ggattttatc ctttggattt tatcagtctc taaaacagtt tccttgacct tcatttgatc
      421 tttctataaa tttatgggcc taaatgctat tcatcgaatc cgagatatga aaaaataaat
      481 ctcattaata ctaaaaaagg catagagatg acacaggaga aaacaggaag agaatgctcg
      541 caaaaaaata gtttatccag tatatgtaat ttcccttgta ttaaataagg gacgaatcgg
      601 gaaagggtat gagatagtta ctattgccag caataacctg gtcttctata ttttgcatag
      661 ttttcatgtt gaattagttc ctcttgtgag ttgaagagag tagaacattg ttcgcatatg
      721 taaggggtga cgtttgtcat ctgactgcct ctatgtttat accatttcat ataaaactat
      781 tgtttataca tcatctcatt gtatatcgat taaactatgg actctattaa gatctaatat
      841 ggagtgccct ttgctctttg gtttttgaag gcttcaatat accattcaaa ttctgcaaga
      901 aatttcaaca cccttttgtc atatgcttca tctattagtt taccgtcttc actaaacacc
      961 ttatggagtc ttggtattga gaaggatgaa gatattgaag gtgctcctaa ctctgcaaaa
     1021 attagcctaa gttgctgggc agcatttatt ccaccaaaca ttcctgggga ataagagaca
     1081 atagctgatg gcttgaaaaa atattcttct aaaaagtaat ctaatgtatt tttcattgca
     1141 ccggaagtgc ccacattata ttcaggagtc actgccaaat atccctctgc gtcatttatt
     1201 ttgctttgga gggatttcat tttctctgaa gggtctgtca tttctttata cattttatca
     1261 agcaaaggca gattaagttc tagcggatcg ataaaaaata ctgtgtggtt acggctcttt
     1321 aatttttctt ccatccagcg agcaacttta ataccttggc gttcccgtct aacagatcca
     1381 actattaacg caattttggc catatttgtc tccttggtta aattaatgtg tattaaatat
     1441 ctactggaat cattgcatta tgatgacaca ggcaaaattc cgaatatgtt gtccaatctt
     1501 ttgcacagaa attttcagta taaattctgc ccttcttgtt agtccagact tcaaggaata
     1561 taagttggtt tcttaaagtt agggaatgaa taatggaaag aagctgaata aactttctag
     1621 gaaatactat acattagtat ttggagtcat aatgggattt ataatgtcag tgctcacctc
     1681 tttagctgtt actataataa atattggaat tattcataat ttcttcgaaa tgtggtctgg
     1741 tatattttta acgacatttg caattggctt tcctatgaca attatgatta ccccatttgt
     1801 aaagaatatt acagatagga taacaatttc agaggcagca aaataaactg atgctatcag
     1861 gttcaataaa aacaatgttc tctcccatgt taatgacggt gattctgaga tttttgaaaa
     1921 aagatcttta aatgactaca cgaattgtta atgtaagaga ttacaaaccc tatagtaaat
     1981 actggactaa tcccccgact agtccttatg tctatattgg cagaaatgtt agatttcaaa
     2041 tcccatttaa gtcgaagtgg cacaatcctt atgcaattaa aaaaactaat gggaaagagg
     2101 gaccgggttc aagagaaaaa gcaatacgcc agtataagga atatattttg aataaacctg
     2161 aactactcag actaattcct attgagctaa aagataaaac gttaggttgt tggtgtaaac
     2221 caaataaatg tcgtggggac gttttggttg agttggctga taaataatcc tacagcaatt
     2281 aaaccgataa tcatttatga caattcgtaa taagaaagat actgatacta gatttgggta
     2341 aacaaaggat tagaatattg attgcagatg ataataagga tgtaaatata ctaatcgccg
     2401 ctacacttgt cctcaaggga tatgaagtct ataaaaccta cagtgctaat gaatgtataa
     2461 gcaagttaga ggaatatgag ggaaaagtaa atgttttact tctaaatggt gcaatagctg
     2521 cagac
//
LOCUS       DASPFX010000367         2841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1481058, whole genome shotgun sequence.
ACCESSION   DASPFX010000367 DASPFX010000000
VERSION     DASPFX010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1481058"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(275..889)
                     /locus_tag="VD694_07865"
     CDS             complement(275..889)
                     /locus_tag="VD694_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HXW12661.1"
                     /translation="MSFPSDIFERMFTDKNTQLLYPKEEIPRHDVEDIVQTNIFNVML
                     NRRSQRKFENRDVEEWKLDMIFAAADTAPTAGGFQGFEIYHIKNQEVKNKLVQAANNQ
                     PYVNAPVVMVFCMNPDRIKLNFSPDMIRKFSQQDATLAAAYSQLAAHALGLSSIWIGM
                     LDENRIRELLGTDLLPSSILCVGYPIKMLIPKPKRNLKDLIHEI"
     gene            1041..1496
                     /locus_tag="VD694_07870"
     CDS             1041..1496
                     /locus_tag="VD694_07870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12662.1"
                     /translation="MVGKKPRTQIQPKTLRTINKEASNIQAIIETMQNSLFDITNEIA
                     RVQPRYAQSYSNFQAEYLEATKMVIQTLSNFQSSLVKFSWINFDNRTSFYTDQIKNQV
                     TTMTENIIKTFDIWNQITLDSIDISKENIKIYNEAMTSMDTYNRDLISS"
     gene            complement(1588..>2841)
                     /locus_tag="VD694_07875"
     CDS             complement(1588..>2841)
                     /locus_tag="VD694_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12663.1"
                     /translation="EVAFVSLLSAVNQKVENKIPDKDIKNLFVAALFHDFDPRKEFEK
                     PNEDNIELFIRNDEKLGKLIHSFGIDLNIVIALIHRTTYPFTGAQKDHALKRIHELFS
                     LAGIQQDDTNAREHYEKLGLYLSICDRIAGYCLGDFSYAKELARRNARGIGWHSQVIN
                     EKSVEFFSGLKQKDDKETFERVIDSLPAAFRKNFFDNVEGFREAWKNELEIKASLRKN
                     EINLVTSLESIIDVKNKTTRDICDTIMKIRYEYCSPTNFHDRDFRKSLDDPSTILITL
                     RINSKMGEIVGYVKGGPLEKHKPKLGLYEENLGKMNSVHMESLRRGTNDQNLGKMNSI
                     FMEWIAIRTGYLGEKGGHMLRSEFLKEAKRRGYCYVTSYSQRELIANRKNKGEPIEIV
                     QQYDPAMIDYYRIDLSQFVESISIN"
BASE COUNT          889 a          535 c          424 g          993 t
ORIGIN      
        1 tttcaataaa tcttcaatta agaagagttc aagaattcct agcaagattt cgcaatgaaa
       61 ttaaagagaa tgatgattct gctaaataga attattaatt atatatatca aatctttcaa
      121 taattttgga tgtaaatttt attacttggc ggtataacat ttaagaattg attaagttct
      181 ttaaaattta cttgttcaca tgttgatttt aggattgtct ttagaatcca aattcttaaa
      241 ttaacgggat cgaaccctag aatttgaact gaaattagat ttcatgaatt agatctttga
      301 gattcctctt tggctttggt atcagcatct ttattggata tcccacacaa agaattgatg
      361 atggaagaag gtccgtacca agcaattccc taatcctatt ttcgtctaac atccctatcc
      421 aaattgagct taaacccaaa gcgtgcgcgg ctaattgcga ataagccgct gcaagtgttg
      481 cgtcttgttg tgagaatttt ctaatcatgt ctggagaaaa atttaatttt atcctatcag
      541 ggttcatgca aaataccatt actactggag catttacata aggttgatta ttggcggcct
      601 gcaccagctt attcttaact tcttgattct ttatgtgata tatttcaaaa ccttggaatc
      661 cacctgctgt aggtgctgta tctgcagctg caaaaatcat atcaagcttc cattcttcaa
      721 catctctatt ttcaaatttt ctttgcgacc ttctattaag cataacattg aagatgtttg
      781 tttgtacaat gtcttctaca tcatgccttg ggatttcttc ttttggatag agcagttgtg
      841 tattcttatc ggtaaacatc ctttcaaaaa tatcactcgg aaaagacaca tgcttgtatt
      901 atcaatcaag ttattaaaat ggatccgttc taaacacaat gatattcaat tggggtttag
      961 ttactgattt caaattgaat ggaatccctt ttgattaaat gtttataaag tatccgtaga
     1021 ttaccactag atggtcaaaa atggttggga aaaaaccaag aactcaaatt caaccaaaaa
     1081 cactgagaac tatcaacaag gaagcttcta acattcaagc tataattgag actatgcaaa
     1141 atagtctgtt tgatattaca aatgaaatcg caagagttca acctcgatat gctcaatcat
     1201 attcaaattt ccaagctgaa tatcttgaag caactaaaat ggtaatccag actttatcta
     1261 attttcagag ttctcttgtc aaatttagtt ggataaactt tgataacaga acctcatttt
     1321 ataccgacca aattaagaat caagtcacta ctatgacaga aaatattatc aaaacctttg
     1381 atatttggaa tcaaattact cttgattcaa ttgatatttc aaaagagaat ataaaaatct
     1441 ataacgaagc tatgacatca atggacactt ataataggga tttaattagc tcctagaact
     1501 cgtttctaat tccattatat agtaaataat tagaaggatt tattaccaaa tagctttcac
     1561 atatatccat tagactatct tgacaagtta atttattgaa attgattcta caaattggga
     1621 caagtcgatt ctatagtaat caatcatagc tgggtcatac tgttgaacta tctcaattgg
     1681 ctctccttta ttctttctat tggcaattag ttccctttga gagtagcttg taacgtaaca
     1741 gtaaccacgt cttttggctt cttttagaaa ttctgatcta agcatatgcc ctcctttttc
     1801 tcccagatat ccggttctaa ttgcaatcca ttccataaaa attgaattca tttttcccaa
     1861 attttggtcg ttggtaccac gtctaaggga ttccatgtgc actgaattca tttttcccaa
     1921 attctcctcg tacaaaccaa gtttgggctt gtgcttttcc aagggaccac cttttacata
     1981 cccgacgatt tcacccatct tactgtttat tctaagcgtg attagtatcg tacttggatc
     2041 gtcaagtgat tttcgaaaat ctctatcatg aaaatttgtg ggagaacaat attcataacg
     2101 gattttcata atcgtatcgc aaatatccct agtcgtctta ttcttcacgt caataatgct
     2161 ttctaatgac gttaccaaat tgatttcatt ttttcttagc gatgccttta tctctagttc
     2221 atttttccaa gcttctctaa aaccttcaac gttatcaaag aagtttttcc tgaatgcagc
     2281 cggtaggctg tctattactc tctcaaaagt ctctttatcg tctttttgct taagaccgct
     2341 gaaaaattca acggactttt cattaatgac ttgcgaatgc catccaatac ctcgagcatt
     2401 gcgccgtgcg agttccttag cataactaaa atcacccaaa caatatcccg ctatgcgatc
     2461 acaaatagac aagtacaacc caagcttttc ataatgctct cttgcgttag tatcatcttg
     2521 ttgaatacct gccaaggaaa atagctcatg tattcttttt aatgcatgat ccttttgtgc
     2581 tcctgtaaag ggatatgtag tcctatgtat taacgcaatg actatattta gatctatacc
     2641 aaatgagtgg ataagcttgc ccagtttttc atcgttccta ataaagagtt caatattgtc
     2701 ctcattaggt ttttcaaatt cctttcttgg atcaaaatca tgaaagagcg ccgccacaaa
     2761 aagattcttt atgtctttat caggaatttt attttctact ttttgattca ctgctgataa
     2821 caatgaaaca aaagcaactt c
//
LOCUS       DASPFX010000368         3542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1805021, whole genome shotgun sequence.
ACCESSION   DASPFX010000368 DASPFX010000000
VERSION     DASPFX010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3542
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1805021"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            220..429
                     /locus_tag="VD694_07880"
     CDS             220..429
                     /locus_tag="VD694_07880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12664.1"
                     /translation="MTDLVLRIAVHCNVNGVPRFQDQHVMGTKERKVLNRELSVILRM
                     DWSIKFVGMVDRNGKLLVGEAKIFH"
     gene            complement(999..1340)
                     /locus_tag="VD694_07885"
     CDS             complement(999..1340)
                     /locus_tag="VD694_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12665.1"
                     /translation="MYSHYNDDIHRIVSDYFHFINEKDMQRLLNLFTDDRVIFEPFSK
                     KQLTHPDIGRRDITYLKGKSEIESFFNIVMMASDGLQYHIEFELIDNAVDANNYGPYD
                     IFYSRHQWFQC"
     gene            2216..2797
                     /locus_tag="VD694_07890"
     CDS             2216..2797
                     /locus_tag="VD694_07890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12666.1"
                     /translation="MPQANIKTRSSTFRLDSNTVDNLQREADQKEISLNVLVNQVLRR
                     YVKWDTFEPKIGMMPVPKIILSRCFNKAILAANEVGMNQGEIESHRDEIIESAAEISF
                     GLIRDSALLMKRTYNLWTVLEILQEYMKVSDMKSDHRIEAGNTHVFIIQHELGENWSL
                     FTKVLLNLIFQNLANTRPDVDITTNTIMAKVTL"
BASE COUNT         1140 a          610 c          653 g         1139 t
ORIGIN      
        1 gaagacctcg aagaacggta taatgccatc agagagatga cttgtcctga cgactgattg
       61 attgattgac tgctattgac atagaattat ttagtcctga actgttgtct ggagatgctt
      121 tcgccttgta tcatgacatc ttcattctcg ctgtaagggc aatcaattgg tccgaaagat
      181 gtgcgatgac atcatactgt attttatccc tttctctaaa tgactgattt agttcttcga
      241 attgcagtgc attgcaacgt aaacggagtt ccaagattcc aggatcagca tgtgatgggt
      301 acaaaagaac gcaaagtatt gaatagagaa ctttccgtga tacttaggat ggattggagc
      361 ataaagttcg ttggcatggt agatcggaat ggaaaattgc ttgtgggcga agcaaagata
      421 ttccattaac ttgcctaaat tgcagacata cagacattac tagaacttcc acatattttg
      481 tcaattcaaa aatcgatgaa ctagatggaa tacactacaa gtacaaaaat atgtaccttc
      541 tttattctga ttatcttaaa tgggtaattg ggaattgcat agcccaccta ggtaatcaaa
      601 agaggttaga tatggcccgt gtaaacccat gaatatcaat gaagtatcac cgtattttta
      661 gatattgagt tgcagtaacg gtgacgttaa attggctatt acacctctga atattattag
      721 gaaaactttc ttttgtatct attttgaacc agcttacagt gtcagaaact ctaacgttgc
      781 aaaagaaggt tttaaaggaa tgctcgacag aattaatggc agtatacttt aattggtaga
      841 ttctggtgtg cagaattgga tccaaagtgt tttgatctcc ttactattct gatagtattt
      901 ctcctttatg ttaacactaa agtaattttt cttgtgaaca acatgaaatt taagcctctc
      961 ctttaactag cgtcctactt tttttccata aaatgtagct agcactgaaa ccactgatga
     1021 cgagaataaa atatatcata tggcccataa ttatttgcat cgactgcatt atctataagt
     1081 tcaaattcaa tatggtattg gaggccatcg ctggccatca taacaatatt gaaaaaggat
     1141 tcaatttcgg acttgccttt gagatatgtt atatctctcc ttccaatatc tgggtgtgtg
     1201 agttgctttt tactaaaggg ctcaaatatt acacggtcat cagtaaacag attgagaagt
     1261 ctttgcatat ctttctcatt tatgaagtga aagtagtctg agacaattcg atgaatatca
     1321 tcattgtagt gagaatacaa gtgttgctac gtctcctcgt tgtatatcat tctattacgg
     1381 cgatttagag aggtcaatgc gatattaccc cttcattaga atgattatta agaataatag
     1441 gttgcatcgt aatgcagtga aatattgatt gctattagaa ttataaattc tgagatcatc
     1501 caccagccta aaagtggagt gacgcgaact tttcatctgt gattatttcg aaccctcgta
     1561 cagtatctag agctacgttg cagatgaaaa taaaagactc aagttctcca actatacggt
     1621 tataatgttg atatagtatt cataatttta aactacttct tgggctaaat acactagcaa
     1681 ccacctatcg aaagataaaa gatggaaaaa ggttttgttc actcaagatt aatgcttcct
     1741 gcatgtagtt ttttagtcga tctctgtttg ttttccatta ggtttagttt cttccttttg
     1801 ccaaaagttg tttcgaatac tccgttattg tattttgact tcgctgtctc taggtcagtt
     1861 ccagaaggta aatctattat cttatgacaa ttacgctgag catcaggtaa cctccacagt
     1921 actatcatat tcgtcaattt tgatcttgtc tttagacacg cctggtattt tcactgtgac
     1981 cttgacatct ttgtctgtgg tcactatatc agatatatct aggacatgaa aaatccaaaa
     2041 aattcggagc agttaggctt aataataaac atccttaccg agtccaagtg caatttgaca
     2101 atggcacatg ttaatctaat ttctcttgat attaacctat tttttacatt atctaaaaat
     2161 taatgctaat ccccgatagc atattgataa atagatgctc taagactaaa gtaatgtgcc
     2221 tcaggcaaat ataaaaacaa gaagcagtac tttccgatta gattctaata cagtggacaa
     2281 ccttcaaaga gaggcagacc agaaggagat atccttaaat gtattggtaa atcaggttct
     2341 tcgaagatac gttaaatggg acacttttga acctaagata ggtatgatgc ctgttccaaa
     2401 gataatactt tctagatgtt ttaacaaagc catcttggcg gcaaacgaag tcggaatgaa
     2461 tcaaggtgaa atagaatcgc accgagatga gataatagag agtgcggcag aaatatcatt
     2521 tggcttgata agagattctg cacttcttat gaagagaaca tacaatctat ggactgtgtt
     2581 agaaatactc caggaatata tgaaggtgtc tgatatgaaa tcagatcata gaatagaggc
     2641 aggtaatact catgtattca taatacaaca cgaactaggt gaaaattggt cattatttac
     2701 caaggtgctt ctgaacttga ttttccagaa tcttgctaat acaagaccag acgttgacat
     2761 cactacaaat acaattatgg cgaaagtgac actttagaaa gacttcttcc ttagaccgtt
     2821 cctttttgtt gcgagaattt gatccgagtt tctatttaat tagcaaaagt atgaatggaa
     2881 gattgaacgt cattgtaaat gtcgcaggat acttgcttgt ccaaacttac cggcctgaca
     2941 cctaacacta acttttgaca acacatatac acacacatat acatacgtat acatctaata
     3001 tagtatcgtg ttatttgact accgtattgt attgcactca acaatgtgta ttattataaa
     3061 tttatcgaaa atgtcacatc gactaagaga aaactatgga caagagcaat gcatcgaaat
     3121 ttggcaggat cgcttatcac atcaatcatc gatgtaatag acgatataga aaccgagtag
     3181 ttgtcttata tcgataagaa ctaggaacta ttcatttgtg atacaagcgg ctaacttgac
     3241 catatatgat gtatcggtaa tgcaactctt gtcctttgct agtgctttgc gagaaccaag
     3301 tggatgctag atttatcagg tatttctgtt gattacagtc atctgattga ttccaaggat
     3361 tagaaatact cactaattaa ccgttattca ttgtgtgaaa cagaattaag atccagtttc
     3421 atagagaaga tcatatcttt ggtttctgga tgtgtaatgc attgcagtgc tgtgaatacc
     3481 taatatacaa atattctaat cacgaaggct ctatgatagc taagaatgac ttttgaagat
     3541 ct
//
LOCUS       DASPFX010000369         2710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_523660, whole genome shotgun sequence.
ACCESSION   DASPFX010000369 DASPFX010000000
VERSION     DASPFX010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523660"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..300)
                     /locus_tag="VD694_07895"
     CDS             complement(<1..300)
                     /locus_tag="VD694_07895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12667.1"
                     /translation="MLSASIANTIKTAGNILDLYPLNGTMIIWIKEKHNNNIIRVKDE
                     EWNHSIYVASDNKADLTSLLRYIHNNDKPGMLELLGIPYTGSDPTALSLALDKALA"
     gene            1149..2072
                     /locus_tag="VD694_07900"
     CDS             1149..2072
                     /locus_tag="VD694_07900"
                     /inference="COORDINATES: protein motif:HMM:NF012730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005216 - monoatomic ion channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ion transporter"
                     /protein_id="HXW12668.1"
                     /translation="MKKRNSSSSRLPELGQSSSSSSSRKDRNKIVDLAQGFVGSKMFD
                     WIITGIIILQAIALAIEATPFVNSAGEYVQLFEVRTFSLIQSLVIAVFIVEAILRMVA
                     LYPKPQNYFRDPWNCFDFAIIVLSLTTAGQFSTIARLVRLLRITRLVTKSAELRAIVS
                     TLVRSIPSIFNILILFSILFFIYAILGYHLFRYVDPQHWSSFLTSFTTLFQIITLEGW
                     VNVMEPIVTTLGPVYWLYFASFIVIGTFIIINLFISVIVRKSEEAYKQVQLESEIPLT
                     QHEIVQEIKEIRRILEELEKRIGDDDKGKVK"
     gene            2324..>2710
                     /locus_tag="VD694_07905"
     CDS             2324..>2710
                     /locus_tag="VD694_07905"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HXW12669.1"
                     /translation="MSIREIGKISITILMDNSTDLLLKNSAHALRSPLIMNERLNLPP
                     PVAEHGFSALININNDHDSSSSSSSSSNRQDLTENANRNIGYTYLFDTGVSEDGVIRN
                     ADLLGVDFGNIDGIILSHGHFDHSTGL"
BASE COUNT          860 a          482 c          511 g          857 t
ORIGIN      
        1 cgccagcgcc ttgtcgagcg cgagcgagag cgcggtcggg tccgagccgg tgtacgggat
       61 gccgagcagc tcgagcatgc ccggcttgtc attattgtgt atatagcgaa gtagagaagt
      121 taaatctgct ttattatctg aagctacata gatcgaatgg ttccattctt catcttttac
      181 tcttattata ttgttgttat gcttttcttt tatccatata atcattgtac catttaaagg
      241 atataggtcg agaatgttgc ctgccgtttt tattgtatta gcaatagaag ctgataacat
      301 atactagacc tgatctgtga ttagagataa caggcatcta tatgtgagta cggtattgta
      361 cttaataact aaatatgtta acttattata tttgataatt tcactattgg aaattatctg
      421 aaatgtactg tatctactaa taataaccaa tgaaatgcga actagaattt ggtgtgctag
      481 tatagtgaat acataccaac aagtcattcc tgactatctt tgaaggatcc gaagtcatgt
      541 actagacaag atgaaaaccg gatctttttc attacgcttc aaccacctca aataccaaat
      601 tacatgaaaa taaattcaga tcaagatcta atccctacat ttggacccta aatctttgag
      661 aaagtattag caattcaaat tcttataaaa aaaagcatag aatgaggaaa ggtatgtatc
      721 aataaatggt tgtagttaca atgttatctt caattttgtc atcctcaata cttatgatga
      781 catttcaaat gaacacttgt tgtaccatgg tactgccaca aagatctagg ccgactaaga
      841 gaaataatag caaaatggac acagcatctt gatggttctt acaccttgta atacatagtg
      901 gacatttgcc ttatatcgta tcaatcgata gctactaaat tagtagaagt gaatgaaaac
      961 attaggatat cttgcctgtt cctccgaatt acaattaatt caagagtatg aaatctagcc
     1021 acctaggttt attgtactac gataggatag atcaagacag gaaattgaag gaacaatctg
     1081 agggttgtct agatatctag agcttggcat ttcataggaa ctgtgcatga agaggtgcgc
     1141 ttaactcgat gaaaaaaagg aactcatcat cgtctcgact tcctgagttg ggacaatcat
     1201 cctcctcctc ctcgtcaaga aaggacagga ataagattgt tgatttagca caaggctttg
     1261 taggaagcaa aatgtttgat tggataatta caggaatcat tatcctccaa gcaatagctc
     1321 ttgccattga agctacgcca tttgtgaatt ctgctggtga atatgttcaa ttattcgaag
     1381 ttagaacttt tagcttaatt caaagccttg tgattgcagt cttcattgta gaagccattt
     1441 tgaggatggt cgcactttat ccaaaaccac aaaactattt ccgagatcct tggaattgct
     1501 tcgattttgc tatcattgtc ttatccctta ctactgcggg tcagttttca acgatagcta
     1561 ggctggtcag attgcttaga attactagat tggtcacaaa atccgctgaa ttgcgcgcaa
     1621 ttgtatcaac gctagttcgt tcgataccta gcatatttaa tatcctgatt ctattttcga
     1681 tcctcttctt catatatgca atattaggat atcacctttt taggtacgtt gatccgcaac
     1741 attggtcatc ttttttgacc tcgtttacaa cgctatttca aatcattacg cttgaaggat
     1801 gggtaaatgt tatggaacca atcgttacca ctttaggacc agtatattgg ctctattttg
     1861 caagcttcat tgtaattgga acttttataa tcataaatct atttatttca gtgattgtga
     1921 gaaaatctga agaagcttat aaacaagtgc aactagaatc agagataccc ttaactcaac
     1981 atgaaattgt acaagagata aaagagattc gcagaatcct agaagaattg gaaaaaagaa
     2041 ttggcgatga tgataagggt aaggtaaaat agagaatttc tagacggaga gagctgaatt
     2101 caatagcgaa aatacttgta gacggtaaac cagttagcta atacagacga tgaaccactt
     2161 tacctacggg aatctaaccc ccttggaccc acttccagtt tgacattctg taaatgtttt
     2221 ggaatttaat ttttagctcc tgatattgca gtgccatttt gttctgttat ataagaaatg
     2281 ttaataagca tcaatttttg atgttcttat cggtagatac actatgtcta taagggaaat
     2341 tggaaaaatc tcgatcacaa ttcttatgga taactcaaca gatttattgc taaaaaattc
     2401 tgcacatgca ttgagaagcc ccttaataat gaatgagaga ttgaatttgc ctcctccagt
     2461 ggcggaacac ggattctccg cactaatcaa tattaataat gaccacgaca gtagtagtag
     2521 cagtagcagt agtagcaacc gtcaagacct gacagaaaat gccaatcgaa atattggtta
     2581 cacatatctc tttgacactg gggtttccga agacggagta attcgtaatg cagatttact
     2641 cggtgtggat tttggtaata ttgatggaat cattctaagc catggtcatt ttgatcattc
     2701 cactggtctt
//
LOCUS       DASPFX010000370         2169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_95437, whole genome shotgun sequence.
ACCESSION   DASPFX010000370 DASPFX010000000
VERSION     DASPFX010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95437"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..398
                     /locus_tag="VD694_07910"
     CDS             <1..398
                     /locus_tag="VD694_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12670.1"
                     /translation="RNVLIGLTFSEVVKKYRAIREEPLPTSLPSEEWIQGMNLDLATY
                     ERKYPKSLFNKGVRIENEDSIGHIMRETEDKIVIFGSYDYRFDVPKSKIKEVGRNVIL
                     SLDYSELFKYKVDKSDPLPAIETGEKLVV"
     gene            543..>2169
                     /locus_tag="VD694_07915"
     CDS             543..>2169
                     /locus_tag="VD694_07915"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HXW12671.1"
                     /translation="MNKQKVKPSAKPLERLFYDNKRALVVIILIIVAASISFILLYQY
                     SNSISREIVNLAIDDIKSNAKIQSHAISHSLANSVSAIISNLQVLSNAPSIHNSSLSS
                     QTLFDAAQESTKGLTEGYYWLDREGKVITYSQVQQFPDYRGVDLSSRDYFKIPRDNNT
                     LYFSSVINSTDKVQRVYISYPIIGNSVNGSSGDNSGSSVIVENNISASTNNNIFEGVI
                     VAALRATEIGKFLQAELLKEFPNTAGLIDRNGVILYSQNQSYIGKNYFGNEFQSIIPI
                     GIRNDFNAIIESSLEGDVGLEDFTIEQGNTSTVAYNPVVVNGDHIWTLYIVSPHQLAE
                     NVYGLINKESVLSIIIIGIIIAIAGALFFIIMSWNRTLRRAVSTRTQELKNTVNQLSQ
                     ANEQLKVHDKMQKEFINVASHEMKTPTQAIIGYSDLMQKHPDKREEMLKAISRNAVRL
                     QRLTNDILDVTRIESQTLKLDKEKFNLSDLIANVVEDQRSHIEKENKKIKLMYNNKYD
                     SYGTPIVDSDRDRITQVISNLLGNAIKFTSNQEE"
BASE COUNT          822 a          335 c          401 g          611 t
ORIGIN      
        1 gcagaaatgt gttgatcgga cttaccttct ctgaggttgt aaagaagtat agggcaatac
       61 gggaggaacc cttacctaca agcctaccgt cagaggaatg gatacaaggg atgaaccttg
      121 acttagcaac ctatgaaaga aagtatccca aatcactatt taataaagga gttagaatag
      181 aaaatgaaga tagcataggg catataatga gggaaaccga agacaaaatc gttatattcg
      241 gaagttatga ttatagattt gatgttccaa agtcaaagat aaaagaagta ggcagaaacg
      301 ttatcctaag tttagattat tcagaattgt tcaaatataa agtagataaa agcgatcctt
      361 tacctgcaat agagactggc gaaaaattgg tagtttagtg aaaagttata ttcttgaatg
      421 aacaaacacg attattttcg gtttggttgt attataatcg tttttattaa ttcgatatga
      481 tacctattac aatgagcaaa agcataaaaa aataaggtaa cttggagttc ttattgtgga
      541 ggatgaataa acaaaaggtc aagccatcag ccaagccatt ggaaagactc ttttatgata
      601 ataagagagc acttgttgtt atcattttaa tcatagtggc tgcgtccatt tcttttatac
      661 tcctatacca atattccaat tctatatcaa gagaaatcgt caacctagca atcgatgata
      721 ttaaatcaaa tgcaaagatt cagtcccatg ccatatccca ttctctagca aatagcgtat
      781 ctgccatcat atctaatcta caagtgcttt ctaatgctcc ctcaatacat aatagtagtc
      841 tgagcagcca aacacttttt gacgcagctc aagaatctac caaaggatta acagaaggat
      901 attactggct tgatagagaa gggaaggtaa taacctatag tcaggttcaa caatttcctg
      961 attacagggg agtagaccta agttctagag actacttcaa aataccaaga gataacaata
     1021 ccttatattt tagtagtgtt ataaattcaa ctgacaaggt tcagcgagtc tacatttctt
     1081 atccaattat tggaaatagt gttaatggaa gtagtggtga taatagtgga agtagtgtta
     1141 ttgtagaaaa caatatctct gcctcgacaa ataataatat atttgaaggc gtcatagtag
     1201 cagcacttag ggcaactgaa attggtaaat ttcttcaagc agaattgctc aaagagttcc
     1261 ctaatactgc tggtctgata gatagaaatg gtgtaatttt atattcacaa aaccaaagtt
     1321 acattggcaa aaattatttt ggaaatgaat ttcaatccat tatacctatt ggaataagaa
     1381 atgatttcaa tgcaattata gagagttcat tagaaggaga cgtaggtcta gaagatttta
     1441 caatcgagca aggcaatact tctactgtag cgtataatcc tgtagttgtt aatggagatc
     1501 atatatggac tttgtatatt gtctcacccc accaacttgc ggaaaatgtt tatggcctga
     1561 taaataaaga atcggttctt agtataatca taataggaat aattattgca atagcagggg
     1621 cactattttt cataattatg tcatggaatc gaacccttag aagagcagtt agtactagaa
     1681 ctcaggaact aaaaaataca gtaaaccaac tatcacaagc aaatgagcaa ctaaaagttc
     1741 atgataagat gcaaaaagag tttatcaacg ttgcaagcca cgaaatgaag acaccgactc
     1801 aggccatcat aggatattct gatttgatgc aaaaacatcc agataaaaga gaagaaatgt
     1861 taaaggcaat ttcaagaaat gccgtcagac ttcaaaggct gacaaatgat atactagatg
     1921 ttacaagaat agaaagtcaa acacttaaac tagataaaga gaagttcaat ctaagtgatt
     1981 tgatagcaaa tgttgtagaa gatcaaagaa gtcatattga aaaagaaaat aaaaaaataa
     2041 agttaatgta taataacaag tatgactcct atggcactcc gatagtagat tcagacagag
     2101 atagaattac acaagtgatc tctaacctat taggtaatgc catcaaattt acgtcaaatc
     2161 aagaggaag
//
LOCUS       DASPFX010000371         2507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_262875, whole genome shotgun sequence.
ACCESSION   DASPFX010000371 DASPFX010000000
VERSION     DASPFX010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262875"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..269
                     /locus_tag="VD694_07920"
     CDS             <1..269
                     /locus_tag="VD694_07920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12672.1"
                     /translation="VRIAHGVGNKKRIEIVTEATKLKMKILNPGKVESMKKVSKKVEK
                     PKKELTAKKESPETAATETKVEKPKKESKTTTAKGKNTGKKGTK"
     gene            272..721
                     /locus_tag="VD694_07925"
     CDS             272..721
                     /locus_tag="VD694_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HXW12673.1"
                     /translation="MVVNLSKKRELISRVLGVGSNRIRFEPDKLDDIADAITREDMRS
                     LIKNGTIWTVKVKGISRSRAERKLKTRRKHGTSAGSKKGKKTARAGKKEVYVKKTKAM
                     RRHLRILKARNEINRETFWALYKKIRGGNVRSLSHLRDLAKQAKTHK"
     gene            complement(731..1066)
                     /locus_tag="VD694_07930"
     CDS             complement(731..1066)
                     /locus_tag="VD694_07930"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HXW12674.1"
                     /translation="MSLDRNIHKKTRTNHINRQAVYDLVSDIPSGKVVTYGRLAKLLG
                     NSHAARGIGKVLNQNPRPIIVPCHRVVCSDGHVGGYMYGKNRKISLLLKEGIPIDNDK
                     IKDFEKYKI"
     gene            complement(1122..1940)
                     /locus_tag="VD694_07935"
     CDS             complement(1122..1940)
                     /locus_tag="VD694_07935"
                     /inference="COORDINATES: protein motif:HMM:NF016312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HXW12675.1"
                     /translation="MSDNYTLVCSRQDLASSTISNCLIENYGFTEMPEENTSFSSTRY
                     PDIVLHISKNSLLYLDNLDEKYPNTSCYIFLSQHRSQANIPALTCHSTGNFSNNDFGG
                     KEKELGICYPWIQKQYLIELNKKKDTVPKYDIIIESTHHGPTSLKRPILFVEIGSTKE
                     QWTDKNAADTVCSSLFTVLAGKRGLCKKVAIGLGGNHYPTKFNNILLESEYGLGPIAA
                     KHDLPHLDNSMIVQMIQKNIEKVTCVIVDAKGLGKEKSRILSALDEVEIEVVRI"
     gene            complement(1961..>2507)
                     /locus_tag="VD694_07940"
     CDS             complement(1961..>2507)
                     /locus_tag="VD694_07940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HXW12676.1"
                     /translation="GNATYISSAQWPEINQSKISLMSEDNESLIQSIISDIQKITKVT
                     RIVPKKISIYTASNIKRMLYRKILDRIQTQVTPNFGQIMKEFVNDDQVKELVKRNPDL
                     VKKIIDDILSESVDVRERRMRIDSFDEKAPLDDGKSLLVSELGNNEIDIDIYSEDDND
                     KYDPKQKSKFARPYKPAIYIE"
BASE COUNT          831 a          442 c          434 g          800 t
ORIGIN      
        1 cagtaagaat agcacatggt gtcgggaaca aaaaacgaat agaaattgtc actgaagcaa
       61 caaaactgaa aatgaaaatt ttgaatccag gaaaggttga atctatgaag aaagtatcta
      121 aaaaggtcga aaaaccaaag aaagaattaa ctgctaaaaa ggaatcaccc gaaacagcag
      181 caactgaaac aaaggtcgaa aaaccaaaga aagaatcaaa aacaacaacc gcaaagggta
      241 aaaacacggg gaaaaaaggg actaagtaat aatggtcgta aatttaagca aaaagagaga
      301 attaatatca agagtattgg gtgtaggctc aaataggatt agatttgaac ccgataaact
      361 tgatgatatt gctgatgcga ttacaagaga ggatatgcgt tccttaatca agaacggtac
      421 tatatggaca gttaaagtaa aaggaatttc tagatctaga gcagaaagga agctgaagac
      481 gcgtaggaaa catggtactt ctgctggttc aaagaaaggt aagaaaactg ccagagccgg
      541 aaagaaggaa gtttacgtca aaaaaaccaa ggccatgaga cgccatttaa gaatactaaa
      601 agctaggaat gaaattaata gagaaacttt ctgggcattg tacaagaaaa ttaggggtgg
      661 caacgttaga tctctatcac acttgaggga cctggccaag caagctaaaa cacacaagta
      721 gaaatcttat ctagatctta tatttctcaa aatcttttat tttatcatta tcaataggaa
      781 taccttcttt aagtaacaat gatatttttc ggttctttcc atacatatat cctccaacat
      841 gtccatctga acagacaact ctgtgacatg gcactataat tggccttgga ttctgattta
      901 gaactttacc tattccacga gccgcatgag aattaccaag cagttttgcc aatcgaccat
      961 aggttacgac tttgccggaa ggaatatctg aaacaagatc atagacagct tgtctattga
     1021 tatgatttgt gcgtgttttt ttatgaatat ttcgatcaag tgacatagac catatctaat
     1081 aagttaaaca atcttaaaaa actattgtat gtttatcaaa tctaaattct tactacttca
     1141 atttccactt cgtctaacgc ggataatatc ctagatttct ctttgcctag tcccttcgca
     1201 tccacaataa cacaagtcac tttttcaata ttcttttgta tcatttgaac tatcatggag
     1261 ttatccaagt gtggtaaatc atgttttgca gctatcggac caagaccata ttctgattcc
     1321 aataatatgt tgttgaattt tgttggataa tgattccctc ctaatccgat cgcgactttt
     1381 ttgcataatc cacgttttcc tgcaagtaca gtgaacaaag aactacatac tgtatcggct
     1441 gcatttttgt ctgtccattg ttcttttgta gatcctattt caacaaacag tattggcctt
     1501 tttaatgatg tgggcccatg gtgtgtggat tcaataatga tatcatattt gggtacggta
     1561 tcttttttct tattcaactc aataaggtat tgtttctgga tccaaggata gcaaattcct
     1621 aattcctttt ctttcccacc aaaatcatta ttactaaaat ttcctgtcga gtgacaagtc
     1681 agcgctggaa tattagcttg agatctatgt tgagatagaa agatataaca tgatgtattg
     1741 ggatattttt cgtcgagatt atccagatat aatagactat tttttgaaat atgcaagaca
     1801 atgtctggat aacgagttga ggaaaatgaa gtattttcct ctggcatctc agtgaatcca
     1861 taattctcaa tcaaacagtt tgatatagta ctactagcga gatcttgcct ggaacataca
     1921 agcgtataat tatctgacat ccttattttt ttggaatccc ttattcaata tatatagctg
     1981 gcttgtacgg tcttgcgaat tttgactttt gttttggatc atacttgtca ttgtcatcct
     2041 ccgagtagat atctatatca atttcattat ttcccaattc gctaaccaat aatgattttc
     2101 cgtcatctaa tggtgctttc tcatcaaagg aatctatcct cattcttctt tctctaacat
     2161 ccactgattc agataaaata tcatcaataa ttttctttac caaatcagga ttccgtttaa
     2221 caagctcctt gacctggtcg tcgttaacaa attccttcat gatttgtcca aaattggggg
     2281 ttacttgtgt ttggattcta tctaatattt ttctatataa catgcgtttg atatttgaag
     2341 cagtataaat cgaaatcttc ttaggaacaa ttctagtaac ctttgttatc ttctgtatat
     2401 cagaaatgat actttggatg agactttcat tatcctcaga catcaatgaa attttagatt
     2461 gattgatctc tggccactga gctgaactga tatatgtagc gttaccc
//
LOCUS       DASPFX010000372         3109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1095273, whole genome shotgun sequence.
ACCESSION   DASPFX010000372 DASPFX010000000
VERSION     DASPFX010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1095273"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            85..1230
                     /locus_tag="VD694_07945"
     CDS             85..1230
                     /locus_tag="VD694_07945"
                     /inference="COORDINATES: protein motif:HMM:NF014011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HXW12677.1"
                     /translation="MNQIQYTEENISFLKNVFRKYYFENNHFPYLYSIEKREFGYRKF
                     DSLVVRHLSFKNVGELVAELMRNVPLDVYYSNAYYGFPSNPINEKLWEGADLIFDIDI
                     KDLDLPCTHEHTYYICNVCGYVNSERKLCINCNKGKTYDTSIPCKRCLTSIKKEAEKL
                     LEFLYCDLGIKERFVEIFFSGNAGFHFHVNDPNIRNLDSYSRANVTDYIIGNGFMCES
                     IGVRKYRNGFVIKLPKSGIVTGWRKKIASNLGINQKSELKLKNIVEASGGYEGFRNEL
                     SKMTRKNGVPIDGQVTNDIHRVFRLPGSINGKSGLIKAKCDDLESFNPNNEACMLSDS
                     EVYVNLKTKLKITLKNNTFRLDDVLEKVPSYVAAYLICKGLASISNA"
     gene            1343..1885
                     /locus_tag="VD694_07950"
     CDS             1343..1885
                     /locus_tag="VD694_07950"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HXW12678.1"
                     /translation="MTVLVIDNGSPYVKDITLCLNGLGQDYDLKKYTEEFFLSNYRKV
                     ILSGRRKNKKEINSINSKIIKACYINDTPVLGICYGAEIIALTFGGSLHRTDLIQGFN
                     RINIERPTKLLEKSHCEVYESHTYAISHLPESFICVASSESSKHEIICHDSKRIFGTQ
                     FHPEKSGECGTELIRNFISL"
     gene            1919..2896
                     /locus_tag="VD694_07955"
     CDS             1919..2896
                     /locus_tag="VD694_07955"
                     /inference="COORDINATES: protein motif:HMM:NF024919.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HXW12679.1"
                     /translation="MLKLDNEHTLILPLVDSNEDEVCLPLAINVILTYWGEYNLIKEA
                     KERAQKYNDIKGSIFVEGFEIAESRGYHVSIIRGNIQALKKKIDQGIPSIVIMPGLKD
                     TIQHATVISGYDPEEKRIVTYVPEPDTVGSIPEKKFTELWEQDGSLTITIVPMDMKDV
                     NDKENPITDQSYRMCFEAEQLLLVGKTKEAIEKLRNAIDTNKSNELALDMLGSIYNEL
                     KSDEAKEYFEAAIKVNPKFYLAYRGIGNYYLRKADYLLAEKSYSSAISINPNRFGPIY
                     KNRGFVRLKLDDKNGAISDLNMYLDQCPQANDKNNIESAIKDLSSEMQL"
BASE COUNT         1107 a          484 c          581 g          937 t
ORIGIN      
        1 cgtagtgaag atctatgctt tgcaatcaaa gagtgcgaga accttataaa tcctattcag
       61 tttggaagaa ggaaaatagg atagttgaat caaattcaat acacggaaga aaatattagc
      121 tttctgaaaa atgtatttag aaaatattat tttgaaaaca accattttcc ttacttgtat
      181 tcaattgaaa aaagagaatt tggatacaga aaatttgatt ccttagtagt cagacattta
      241 tcgttcaaga atgtgggaga acttgtcgca gagctaatgc gaaatgttcc cctggatgtt
      301 tattattcaa atgcttatta tggatttcct tcaaatccaa ttaatgaaaa actatgggaa
      361 ggcgctgatc taatatttga tattgacatc aaagacctag atcttccatg cactcacgaa
      421 catacctatt acatttgtaa tgtgtgtggg tatgtaaact ccgagcgtaa actgtgcatt
      481 aactgcaata aaggaaagac atatgatact tcaatacctt gtaagagatg cctcacatcg
      541 ataaagaagg aagcagaaaa gttacttgag ttcttatatt gtgatcttgg aataaaagaa
      601 aggttcgtag agatattttt ctctggaaat gctggatttc actttcatgt aaacgatcct
      661 aatataagaa acctcgactc ctactccaga gcaaatgtca ctgattatat catagggaat
      721 ggtttcatgt gtgaaagcat cggtgtacga aaatatcgta atggctttgt tataaaatta
      781 ccaaagagtg gtatagtgac tggctggcgt aagaaaattg cctctaactt gggaataaat
      841 caaaaatctg aactaaagct aaagaatatt gtggaggcaa gcggtggata cgaaggattt
      901 aggaatgagc ttagcaagat gactagaaaa aatggagttc ctattgatgg tcaggttacc
      961 aatgatatac atagagtttt tagactgccc ggtagtatta acggcaagag tgggttgatt
     1021 aaagcaaagt gcgacgatct ggaatccttt aacccaaata acgaagcgtg tatgttaagt
     1081 gactctgagg tgtatgtcaa cctaaaaacc aaactgaaaa ttaccttgaa aaataatacc
     1141 tttagactag atgatgtctt agaaaaggtc ccttcatatg ttgcagctta tcttatttgt
     1201 aagggattgg cttcaatctc aaatgcttga tagtaaaggc atggattagt aagaaccaaa
     1261 ataatgtgct tcgtgttaaa aataagttat tctgtaaagt atggttatta ttatagattc
     1321 ataataatta acaaatcaga atttgacagt acttgttatt gacaacggtt ccccatatgt
     1381 caaagatatt actttgtgtt tgaatggcct aggacaggat tatgatttaa agaaatacac
     1441 tgaagaattt ttcctttcga actatagaaa agtaatattg tcaggacgtc gaaagaataa
     1501 aaaagaaatt aattcaataa actcaaaaat tatcaaagca tgttatatca atgatactcc
     1561 cgttctgggc atctgttatg gtgcagaaat catagcactt accttcggcg gttcattgca
     1621 taggactgat cttatccagg gctttaacag aatcaatatt gaaagaccta ccaaactatt
     1681 ggaaaagtct cattgtgagg tatacgaaag tcacacatat gctatatcgc atctaccaga
     1741 aagtttcata tgtgtagcta gttctgaatc atcaaaacac gaaataatat gccatgactc
     1801 aaagaggatt tttggcaccc agtttcatcc agaaaaaagt ggggaatgtg gtactgagtt
     1861 gattcgaaat tttattagtt tgtgacaaga attttatttt cccttatcat aaccctgaat
     1921 gttgaaacta gataatgagc atacactaat ccttccctta gtcgatagca atgaagatga
     1981 ggtttgtcta cctttagcaa taaacgtaat tttgacatat tggggagaat ataacctcat
     2041 taaagaagcc aaagaacggg cacaaaaata taatgatatt aaaggttcta tttttgttga
     2101 aggtttcgaa attgcagaga gtcgagggta ccatgttagc ataatccggg gcaatattca
     2161 agcgttaaag aaaaaaatag atcagggtat tccctccatt gttatcatgc ctggattaaa
     2221 ggatactata caacatgcga cggtcatctc cggatatgat cctgaagaaa aaagaatagt
     2281 tacttatgtc cctgagcccg atacagttgg atccatccca gaaaaaaaat tcacagaatt
     2341 atgggaacaa gatggatcgt taactatcac tatagttcct atggacatga aggatgttaa
     2401 tgacaaagaa aatcctatta ccgatcagtc ttatagaatg tgttttgaag ctgaacaatt
     2461 gcttttagtt ggtaagacaa aagaagcaat tgaaaaattg agaaatgcca ttgatactaa
     2521 caaaagtaat gaacttgcgc tggatatgtt aggttctatc tataatgaac taaaatctga
     2581 tgaagcaaag gaatattttg aagccgccat caaagtcaat ccaaaatttt atctggctta
     2641 tagaggtata ggaaattatt acctcagaaa agcagactat cttttagccg aaaaatccta
     2701 ttcatctgca atttcgataa atccaaatcg atttggacct atctataaga acagggggtt
     2761 tgttagacta aaattggatg ataagaacgg cgcaatttcg gatctaaata tgtatctgga
     2821 tcaatgtccg caagcaaatg ataaaaacaa tatagaatcc gccataaaag atctttcatc
     2881 agaaatgcaa ttatgaatta agatggcgat agatattcac catctcctat gactggtcga
     2941 gtaactcttt gcattacata ttaaatatca tttcaaaatt atcttaatcg aaactagata
     3001 aacgatttta tgatttcaag agcattgttg ataccatcat gcctatctgt aatctttttt
     3061 attttctgaa cattctctaa ataggactta tcatccaata tcgtgtgaa
//
LOCUS       DASPFX010000373         2096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1482788, whole genome shotgun sequence.
ACCESSION   DASPFX010000373 DASPFX010000000
VERSION     DASPFX010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1482788"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            273..1118
                     /locus_tag="VD694_07960"
     CDS             273..1118
                     /locus_tag="VD694_07960"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HXW12680.1"
                     /translation="MSYVHPEVLVDTQWAEDHLKDLKVRIAEVDYDAKANYELGHIPG
                     AVLFDWKNDINDPLTRNVLTKEACQNLLQNAGVNNDTTLLLYGDFNNWFAAFAFWVLK
                     YYGYKDIRLINGGRKKWLQEDRVLTKDVPSYPKGNFAASDPDSKIRVFLDEVKRAVSA
                     PELKMIDVRSPKEFSGEILAPPEYPTEHAQRGGHIPGAVNIPWAQAVNDSDGTFKNTE
                     ELKQLYESKGITPDKEVIAYCRIGERSSHTWFVLKYLLGYPNVKNYDGSWTEWGNMIA
                     NPIER"
     gene            complement(1164..1829)
                     /locus_tag="VD694_07965"
     CDS             complement(1164..1829)
                     /locus_tag="VD694_07965"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HXW12681.1"
                     /translation="MEIEHCVFPDDLMYDLDNLIWARKDAGNVLVIGITSILSAIAGK
                     ISAVKIKGVNTTVIKGKNIGTIESGRYFGTVRAPVDGRIMSINHELVSNPKLANDSPY
                     EKGWFITLAPTSDINIMKDLKSLPHDSEEIRSLIRTLHVKCYAALPDFDMFEIGIECA
                     ATLSKLDDLISGIETGQIVHLVSDDPMADIEMTRWAEQTGQKLIETRKEENLLHFLIQ
                     KIN"
BASE COUNT          638 a          401 c          417 g          640 t
ORIGIN      
        1 gatatttcaa agggaacccc gaaggagcaa acaggcctct actgaacgca aaaggcttgt
       61 aagacctcca aactattggg cgaagcagaa aaataagagt ggaactgtaa acctattttc
      121 ttttttcctg ctaattttat ccatgatgat gtaaattatc tctctatctt tattccaatt
      181 tcagtcggct aggaaatcaa ttgaatgcct gatattaatt ttttagatat taaactaata
      241 tatgatgata actcatattt tgtgaagaaa aaatgagtta cgttcatcca gaagtacttg
      301 tcgatacgca atgggctgaa gatcacttaa aggatctgaa ggtcagaatc gcagaagttg
      361 actatgacgc gaaagcaaac tacgaattgg gacatatccc tggcgctgta ttgtttgatt
      421 ggaaaaacga cattaacgat ccccttactc gaaatgtgct aacgaaagaa gcctgtcaga
      481 atcttctcca aaacgccggg gtaaacaatg atactactct actattgtat ggagatttta
      541 acaattggtt tgccgccttt gcattttggg ttctcaagta ctacggctat aaagatatta
      601 gactcatcaa tggtggacga aaaaaatggt tgcaagaaga tagggtatta acaaaagatg
      661 ttccttctta tcctaagggt aactttgcag ccagcgatcc tgatagcaaa attagggtat
      721 ttttagatga agtcaaacgc gccgttagcg ctccagaact aaagatgata gatgttcgat
      781 ctccgaaaga gttttccgga gaaattcttg ctccaccaga gtatccaaca gagcatgctc
      841 aacgaggagg acatattcca ggcgccgtca atattccatg ggcccaggca gtaaatgata
      901 gtgatggtac cttcaagaat actgaagagc ttaagcagct atacgaatca aaagggatca
      961 ctcctgataa ggaagttatc gcctattgta ggatcggcga aaggtcatcg cacacatggt
     1021 ttgttcttaa gtacctccta ggctatccga acgtaaagaa ctatgatggg tcttggactg
     1081 aatggggaaa catgatcgca aatcctattg agaggtagca aatcttggat taaggtagga
     1141 catttcaacc ctccctaaga gattcaattt attttttgga taaggaaatg caataaattt
     1201 tcttctttcc tcgtttctat cagtttttgt ccggtctgtt cggcccacct agtcatttct
     1261 atgtcggcca taggatcatc tgagactagg tgaacgattt gtccagtttc gataccggat
     1321 atgagatcgt ctaattttga cagcgtcgca gcgcattcaa tacctatttc aaacatatca
     1381 aaatctggaa gagccgcata gcatttgaca tgcaatgtac ggatcaatga tctaatttcc
     1441 tcactatcgt ggggtagcga tttcaggtct ttcataatgt taatatcaga agttggagca
     1501 agagtgatga accatccctt ttcgtagggt gaatcgttcg ctaattttgg attgctgact
     1561 agttcatgat taatggacat aatccttccg tcaacaggag ctctaactgt gccgaaatat
     1621 cttccgcttt caattgttcc tatgtttttt cccttaatta ctgttgtatt aactcccttt
     1681 atctttacag ctgaaatttt acccgcaatt gcggacagta ttgaagtaat tccgataaca
     1741 agtacatttc cagcatcttt tcgtgcccaa atcaaattgt ctaaatcata cattagatca
     1801 tctggaaata cacagtgctc aatttccata ctcgagactc tcttgcagga gatggttagc
     1861 atatttatct atttacactc caaaaagcag aatctcatcc tttcagagct tttcttttca
     1921 attggacgac aaaatattat tatgcgattc acgttatatt tcattgaaag agtttgacaa
     1981 gctgcacaat ttgtggttct agatttggtg ataggatctg cccatattgt gaaaagagtg
     2041 tgtgttcatc atgcattatt tatggaaaga atacatgcgt gaaatgtaac aatgta
//
LOCUS       DASPFX010000374         4605 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1665682, whole genome shotgun sequence.
ACCESSION   DASPFX010000374 DASPFX010000000
VERSION     DASPFX010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4605
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1665682"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..1373)
                     /locus_tag="VD694_07970"
     CDS             complement(126..1373)
                     /locus_tag="VD694_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HXW12682.1"
                     /translation="MPLISSLKGRIVYNSRGSKSIEIDVITDNKFLGRACAPSGASVG
                     SHEVPSFVDNNAELTLQKFESNKIKFVGADASDSRAINQILRDIDTSDNYDRVGGSVA
                     YGVSIASAASASLSLDVPLFAMLNKHGPYRFPYPLGNILGGGSHAGPGTPDIQEVLVC
                     PMGSKTINEALETNFKIHKDVRVLLEKKDKNFTYGRGDEGAWAPNLNNDEAVSIVAQA
                     VEDSGLRLGKDIALGIDFASSSLWDPKKKIYDYSRQGLVRTTQEQIDFVEDLIKNYHL
                     IYAEDPVNEDDFESMATLTKRNNNCFITGDDMLVTSSDRVNEARRYGACNAAILKVNQ
                     AGTLHDALDFANTCTKNSIRIVTSHRSGESIDSHISHIAVATASKMIKTGVVGGERVS
                     KLNELLRLSEYDLIKGMIDLSFT"
     gene            complement(1387..1623)
                     /locus_tag="VD694_07975"
     CDS             complement(1387..1623)
                     /locus_tag="VD694_07975"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit N"
                     /protein_id="HXW12683.1"
                     /translation="MLIPVRCFTCGNVIANKYGEYSNRIKAGEDPAEVMDSLNIKRYC
                     CRRMFVSTVETIYQVIPYYEALRRRMSEIESEID"
     gene            1725..1809
                     /locus_tag="VD694_07980"
     tRNA            1725..1809
                     /locus_tag="VD694_07980"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1761..1763,aa:Leu,seq:gag)
     gene            2053..2469
                     /locus_tag="VD694_07985"
     CDS             2053..2469
                     /locus_tag="VD694_07985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12684.1"
                     /translation="MEIESSMNRKQELYALLKSQHEAEVKEMNHYMTVLSRMNNGIIK
                     NYVHKLLDDGLRHIEYISTLMSSIEGASSSLNLTKQGIIGSIDEEKESRDILLKCVAL
                     ADDVETKSLLKSIIVDEEHHIKILEHIEELVSSSGK"
     gene            2557..3066
                     /locus_tag="VD694_07990"
     CDS             2557..3066
                     /locus_tag="VD694_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12685.1"
                     /translation="METSKCLPLISKDGITTDQFAIAQYDSLFVGTCLNIRQLRSQIP
                     SIARTVSIAKNLDYYQNKICHEIPSIPDTEQIKPILQKLRITIITLFLKLNKLMVENK
                     INISLEFDKYLVEWNKHSEQVLMTTSTILIGYQQGKTDKKTLESIKGTLDYLDISESL
                     LDDEISYLY"
     gene            complement(3072..3563)
                     /gene="bcp"
                     /locus_tag="VD694_07995"
     CDS             complement(3072..3563)
                     /gene="bcp"
                     /locus_tag="VD694_07995"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HXW12686.1"
                     /translation="MTNEEKSDSEGLTIGSVAPDFTFRSGIQQMKLSDFRKRKVVVYF
                     YPRDFTTGCTTEASEFTTDYDKFKQRGIEIIGVSPDTEESHEKFREKMKIPYHLASDV
                     NNAISKKYGTFGLKKFMGKEYMGVNRTTFLVDERGMIVEIFNKVKPQGHSNQVLEAFE
                     ITS"
     gene            3701..>4605
                     /locus_tag="VD694_08000"
     CDS             3701..>4605
                     /locus_tag="VD694_08000"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HXW12687.1"
                     /translation="MANYDIVVVGGGPAGLSAAYSAARKNAKTIVLEKDDSIAQNIRT
                     SGVSWIDDMNRLEIPERCYNAIKNFRIVSPSKDILLRGKTAKSCVLDVRSAYQYLATL
                     AAKAGAELAVRSEVRSVKYDSNKISGVVCNTPKGTIEIDSKLVIDASGFSSIVARRSG
                     LVQKWAKYGIGAEYECYCDDIDPETWTLMVGQKYSDAGYAWIFPISKQRVRIGTGVGR
                     PESMADPIKKLNSIMEGKFKPLEELGNIQPIEFHYGFIPNQGSRNSSIFDGLILVGDS
                     AGQANPLVLEGIRFAIEFGRVAGDVG"
BASE COUNT         1434 a          870 c          807 g         1494 t
ORIGIN      
        1 tatcgttttc aatatcctct tctcccattc tgctgtattc ctggctatcg gaatcttcag
       61 ttgtttgatt ctctatttcc tctaaagatt ctttggcgtt ttcttcttgg tttgcacttg
      121 acatcttaag tgaatgacaa atcaatcatg ccttttatta aatcatactc tgaaagtctt
      181 aaaagttcat ttaatttgga cactcgttct ccccccacaa cgccagtttt tatcattttg
      241 gaagccgttg ctacggctat atgggaaata tgtgaatcta ttgattctcc agaccgatgc
      301 gaagttacta ttctaatgct attcttagta caggtatttg caaaatccaa agcatcatgt
      361 aaagtaccag cttgattaac cttcaaaatc gcagcgttac aagctccgta cctgcgtgcc
      421 tcgtttaccc tatcgctact tgtaacaagc atatcatcac cagtaatgaa acaattgttg
      481 tttctttttg taagggttgc catactctca aaatcatctt cattgaccgg atcctctgca
      541 taaatcaaat gataattctt tattaaatcc tctacaaaat ctatttgctc ctgagttgtt
      601 ctaactagtc cttgtcttga ataatcataa atctttttct taggatccca taatgaagaa
      661 cttgcaaaat caatacccaa ggcaatatct ttgcccaatc tcagaccaga atcttccaca
      721 gcttgggcaa caattgaaac tgcctcgtcg ttatttagat tgggagccca agcgccttca
      781 tcgcctctac catacgtgaa attcttgtct tttttttcta agagtaccct tacgtcttta
      841 tgtattttga aattagtttc taatgcctcg ttgatagtct tggaccccat cggacaaaca
      901 agaacttctt gaatatctgg cgtaccagga cctgcatgag aaccccctcc aagaatgtta
      961 ccaaggggat aagggaacct gtatggtccg tgcttattca acattgcaaa gagtggaaca
     1021 tccaatgaga gagaagcaga tgctgctgat gcaatactaa ctccatacgc cacagatccc
     1081 ccgactctat cataattgtc agaagtatca atatccctga ggatttgatt tatcgcgcgt
     1141 gaatctgagg catcagctcc aacaaattta atcttgtttg attcaaattt ttgtagtgtt
     1201 aactctgcat tattgtcaac aaaacttggt acttcatgac ttcctacact ggccccagaa
     1261 ggagcacatg ctctgcctaa aaatttattg tctgtaatta cgtctatttc tatggacttt
     1321 gagcctctgc tgttataaac aattcttccc ttcaacgacg aaattaaagg catatttatt
     1381 tcaggcttaa tctatttcgg attcgatttc tgacatgcgt ctacgtaatg cctcgtaata
     1441 aggtatcact tggtatattg tttcaacagt agatacaaac attcgcctac agcaatatct
     1501 tttgatattg agtgaatcca taacttctgc aggatcttct ccggctttaa ttctgttaga
     1561 gtattcaccg tatttgttag ctattacatt cccacaggta aagcatctta cgggtataag
     1621 cattgatttt ttatcttcaa atggcttata aaaaccaata tttgctacgt ttgtgtttat
     1681 atagcaaata ttcaaattag tgatttttga accgctaaat ctatgcggga gtcgcccagc
     1741 ttggtcaacg gcgtaagact gaggctctta tcccttaggg gttcgtgggt tcaaatccca
     1801 tctcccgcat tttaaataat tgatttagga aaatttcttt aatattttat aataaggtga
     1861 tgtcttgtgt ttttcaatac atttttcaca taacgatttg tgtccatatt taacatgaca
     1921 tttgcaatca cataactcag tatttatcaa cagctaactg atttccaaat ttatgttatt
     1981 taaataattt caaataaacg agccatcata catacgaaaa attttttatt gattactttg
     2041 gaggttatac caatggaaat agaatcttca atgaatagaa agcaagaact atatgcttta
     2101 ctgaaatctc aacacgaagc tgaggttaag gaaatgaatc attacatgac agtattgagc
     2161 cgaatgaata atggaatcat aaagaattac gtgcacaaat tgcttgacga cggcttgaga
     2221 cacattgaat atatttctac attgatgtcg tctattgaag gcgcgagcag cagcctgaat
     2281 ttgacaaagc agggtattat cgggtcaata gatgaagaaa aggaatcaag ggatatactg
     2341 ttaaaatgtg ttgccctcgc tgatgatgta gagacaaaat ctctgttgaa aagtattatt
     2401 gtcgatgaag aacatcacat caagatactt gaacacattg aagaattagt atcttcatct
     2461 ggtaaataac catcattgga ttaggttatt aatcctaatc gctcaaaata atacatgtca
     2521 cagtccaaac taatacgctt aattttaaaa atctatgtgg aaacttcaaa atgtttaccc
     2581 cttattagta aagatggtat tactactgat caatttgcaa tcgcccaata tgattcactc
     2641 tttgtcggca cttgcctaaa tattagacaa ttaaggtcac agattccttc aatagccaga
     2701 actgttagta ttgcaaagaa tctcgactac tatcaaaaca agatatgtca tgaaatacca
     2761 tcaattcctg atacagaaca gataaaaccg attttgcaaa agttgcgcat aacaataatc
     2821 acattgtttt taaaactgaa taagctaatg gtagaaaata aaataaacat ttctttagaa
     2881 tttgataaat atttagtaga atggaataaa cattcagagc aagttttgat gaccacctct
     2941 actattttga ttggttatca acagggaaag actgataaaa aaactcttga atctataaaa
     3001 gggactttgg attatcttga catatcagag tcactgcttg acgatgaaat atcttacctg
     3061 tattgattta tttaactagt gatttcaaat gcttcaagta cttgattact atggccctgt
     3121 ggcttgacct tgttgaatat ctctactatc atccctcttt catctaccag aaatgtagtt
     3181 ctgttaacac ccatgtactc tttacccatg aattttttca atccgaatgt tccatatttt
     3241 tttgatattg cattgttaac gtcagaagcc aaatgatatg gtattttcat tttttcccta
     3301 aatttctcat gcgattcttc agtatcagga ctaactccaa ttatctcaat acccctctgt
     3361 ttaaatttgt cataatcagt tgtaaattct gaagcttcag ttgtacatcc tgttgtaaaa
     3421 tcccgtggat aaaagtacac tacgaccttt cttttcctaa aatcagataa tttcatttgt
     3481 tgtatcccac tcctaaatgt aaaatccggc gctacgctcc ctattgttaa accttctgaa
     3541 tctgattttt cttcatttgt caaatctttc tatgtcatga ttttttctaa ctggcataat
     3601 aaaagcattg atggtaatag attctaggat actggaaata aaaattaata taactttcta
     3661 ctgaatttaa aaatcacata gttgagtgca aagtaatttt atggctaatt acgatatcgt
     3721 ggttgtaggt ggtggaccgg cgggcctttc ggctgcgtat tctgcggcta gaaaaaatgc
     3781 taaaactatt gtcctagaaa aggatgattc tattgcacag aacattagaa ccagtggtgt
     3841 gtcttggatt gacgatatga accgacttga aattccagaa agatgttaca acgccataaa
     3901 aaatttcagg atagtctctc catcaaagga tattctccta aggggaaaaa cagcaaagtc
     3961 atgcgttctg gatgttcgat ccgcttacca gtatttggca acacttgcgg cgaaagcagg
     4021 agctgaatta gctgttagga gtgaagttcg atcagttaaa tatgattcta acaagataag
     4081 cggagtagta tgcaatactc caaaggggac aattgaaatt gattcaaaac tcgttataga
     4141 cgcaagtggt tttagcagca tagtggccag aagatccgga ctagtgcaaa aatgggcgaa
     4201 gtacggtata ggtgctgaat acgaatgtta ctgtgatgat attgatccag aaacatggac
     4261 cctaatggtt ggacaaaagt actccgatgc agggtatgct tggatttttc caatttctaa
     4321 acaacgtgtg agaataggaa cgggagttgg gcgacctgag tcaatggctg atccaattaa
     4381 aaaattaaat tcaataatgg aaggtaaatt caaaccatta gaagaacttg gaaatattca
     4441 accaattgaa tttcactatg gattcatccc aaatcaagga tcacgtaact catcaatatt
     4501 tgacggctta atactggtag gggattctgc cggtcaggca aaccctctgg ttctggaggg
     4561 cataagattt gcaatagaat ttgggcgtgt ggcaggtgat gtggg
//
LOCUS       DASPFX010000375         5073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1195521, whole genome shotgun sequence.
ACCESSION   DASPFX010000375 DASPFX010000000
VERSION     DASPFX010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5073
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1195521"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VD694_08005"
     CDS             <1..282
                     /locus_tag="VD694_08005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12688.1"
                     /translation="GKVNEGADKGSGLIKAGTEFGVVNGGRILGKLKAGGEVGVKENK
                     KGSGKFKADINLGLESDSLGELKDGSDYAVDKIKSGLKVVMKKIEKTRR"
     gene            263..493
                     /locus_tag="VD694_08010"
     CDS             263..493
                     /locus_tag="VD694_08010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12689.1"
                     /translation="MKRLDDELGPSLHKLEIKLKHQRSVKTKLQGKESAFDKEFKEII
                     KKTVLPIMIEYKKFLEGKQQDVYLTCTIENTL"
     gene            537..740
                     /locus_tag="VD694_08015"
     CDS             537..740
                     /locus_tag="VD694_08015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12690.1"
                     /translation="MLNQPTTRRITFFPRNERIHIFEEGLLGDDHPVELSYAKNEISK
                     EFVRKKMSSLIKEYIDKLLVGFQ"
     gene            complement(778..1011)
                     /locus_tag="VD694_08020"
     CDS             complement(778..1011)
                     /locus_tag="VD694_08020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12691.1"
                     /translation="MDVVKEIASRYGSMSLIEFDGYFEGKFEPAKYTRLEVHTEIMRE
                     QKFIEYANKIRLRLKQNSLAVEFDNKLILIVES"
     gene            1689..3359
                     /locus_tag="VD694_08025"
     CDS             1689..3359
                     /locus_tag="VD694_08025"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HXW12692.1"
                     /translation="MPSPPYHEKTQFITKRSEIVDIISKTEKYLNIMGDSKAPQFLLS
                     DQIRKSLQRAKNRGIRVRFITEITHANLTLCKEIMKFAEVRHLEKVIGNFILSDKEYF
                     GQSSGSSYQANQIYNNDDGIVELQNYVFENLWNNSVSEHDKSSSLEVGVDPEEVKVLS
                     DPVEIRKTYLSLIESAKSDISLIIATPNALQRNYKGGIISMLIDASEKRGVTVNLVVP
                     TYDNAKIKDEFLRTESLDKNIKFQMKSIAPVTTQTHKIKTTFLIVDKKSVFIIDVKDD
                     NKDNFIEAVGYATFHTSKSRIESYNFIFDTIWRQADLYESLKEANKNLIFSYQKLEEH
                     DAMEKEFINLAAHELRTPSQSIIGYSEMLKDLPERNKQYEEAISRNAERLYSLVTNML
                     SIARIESQTMKLNKTTFDLNVKIENVIRDVSQQVELRKADKVRIDFTPTSRINIIADK
                     EKIFQVFANLLNNAIKFTNEGSINISIKQKEKRNEAIVTIKDSGSGIDAEIIPHLFSK
                     FKTKSEKGLGLGLYISKNIVEAHHGKIEAYNNPNSKGATFVVTLPLKG"
     gene            3842..4306
                     /locus_tag="VD694_08030"
     CDS             3842..4306
                     /locus_tag="VD694_08030"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12693.1"
                     /translation="MFQICVSIGVGGGALEIAINNRIVSIVDDELDITELFRDAICDS
                     IDGISVVTFNDPQAALEHFADHKSDYALVISDLRMPSLNGLELLKRIKNASPNVRTIL
                     MSAFDYEFDELYRTYSDAGIIDSLIEKPVTIDALCQRVRDEFQVYQLKLHLR"
     gene            complement(4337..4735)
                     /locus_tag="VD694_08035"
     CDS             complement(4337..4735)
                     /locus_tag="VD694_08035"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12694.1"
                     /translation="MNNKKLKVMIVEDEEDILILYKDFLSGKGHDVTTMYLDGDVMIE
                     EIDEAKCEIYLIDYRLPGNKNGIDIAIQILDKFPSAPILFITAYENLHKEISKNPNFH
                     GKNVDILLKPVKLDKIESTMVSLMNRNQVS"
BASE COUNT         1836 a          799 c          915 g         1523 t
ORIGIN      
        1 gggaaagtaa atgaaggagc tgacaaaggt tcgggcttaa taaaagcggg aaccgaattt
       61 ggagttgtaa atggtggtcg tattttgggt aaattgaaag caggtgggga ggtaggagtt
      121 aaagagaaca agaaaggttc aggaaaattt aaagcagata ttaacctggg tttggagagt
      181 gattctttgg gtgaactaaa ggatggtagt gattatgctg ttgataaaat taagtctgga
      241 ttaaaagtgg taatgaaaaa aattgaaaag actagacgat gagttaggtc catcactgca
      301 taaattagaa ataaaactaa aacatcaaag gtcagtaaag acaaaactac aaggcaaaga
      361 gtctgcattt gataaagaat tcaaagaaat aattaaaaaa actgttctac ccataatgat
      421 tgaatataaa aaattccttg aaggtaaaca acaggatgtg tatctgactt gcaccataga
      481 gaacacctta tgagttacat gaaggtatta cctttgaact aaaggattca attaagatgt
      541 taaatcaacc cacaacaaga aggatcactt tctttccaag gaatgaaaga atacatattt
      601 ttgaagaagg attattaggt gatgatcatc ctgttgaact cagttatgct aaaaatgaaa
      661 tatcaaaaga atttgtaaga aaaaaaatga gttccttaat aaaggaatat attgacaaat
      721 tactagttgg ttttcaataa atggatacac tatttcacga atcagtgaag tggggattca
      781 actttcaacg ataagaatta atttattatc aaattctacg gctaatgagt tttgtttcaa
      841 acgcagacga atcttgttgg catattctat aaacttttgt tctcgcatta tttcagtatg
      901 aacttctaat cgggtgtact ttgcgggttc aaactttcct tcaaaatacc cgtcgaattc
      961 tattagcgac atacttccat atctggaggc aatctccttc acgacatcca tgtatccttc
     1021 agtccgaggt aaataaaatt ttacggaatg tggtagcact ttggtaatat agagtccttt
     1081 ggccatagaa taacatatga aacattctat ctaatgattt ctatttgaac gtcttattgt
     1141 cacttacctg ttcgtattta ccttttttaa caatcattta taagaaaatg atgcgcacct
     1201 acaaatattt gagttaacta gttaattgct caaaagcaat ttaattcaaa tccgtgtaaa
     1261 attttgtaaa ttatgtgttt tacaggtgtt cctcatctta gtcacaagac atgaaaatag
     1321 tgttaaaatc acatacttaa gttattcaaa ctatagtcct gatttcatcc agcttatttt
     1381 tgatttcgca tctaaataat gctttgatgg tctgattttg taatatttgt gccgaatcca
     1441 aattagcaat ccggttagag aaataaaact cgctacaact atttcataca tcaccaataa
     1501 atcagccatt caatcagctt gatttgacat aaataaaaat ctaggttaat cctgttgaaa
     1561 ttcactgcgt ccatgaaaca aattaaatca tgataacaag aatcggagtt ctcagtatta
     1621 gattctagag gtaccgaaaa cacagttgac agcactgctt aaatcttatt atgaacaaaa
     1681 agtaatggat gccctcccca ccgtatcacg agaagactca gtttataacc aaacggtcag
     1741 aaatcgtcga cattatatct aaaacggaga aatacctgaa tatcatgggc gattcaaaag
     1801 caccacaatt cctgctttct gaccaaataa gaaaatcgct gcaaagggca aagaacaggg
     1861 ggataagagt caggtttata acagaaatta ctcatgcaaa cctaaccttg tgcaaggaaa
     1921 ttatgaaatt tgctgaagtt cgccacttag aaaaggttat tggaaatttc attctaagtg
     1981 ataaagagta ttttggtcag tcatcgggga gcagttacca ggctaatcaa atttataata
     2041 atgatgatgg aatagttgag cttcaaaatt atgtttttga aaatctgtgg aataattctg
     2101 tttccgaaca cgataaatca tcaagcttag aagttggagt agatcctgaa gaagttaagg
     2161 tattgtccga tcctgtagaa attagaaaaa catacttgag tctcattgaa tctgcgaaat
     2221 ctgatatatc actaattata gcaacgccaa atgcactaca aagaaattac aaaggaggaa
     2281 taatctcaat gttgattgat gcttcggaga aacgaggtgt tacggtcaat ttagttgttc
     2341 ctacctacga taacgctaaa attaaagatg aatttcttcg caccgaatca cttgacaaga
     2401 acattaagtt ccaaatgaaa tcaatagcac ctgttacaac ccagactcat aagataaaaa
     2461 ctaccttctt gatagtagat aaaaaatcag tgttcataat agatgtgaaa gatgataata
     2521 aagacaactt catagaggct gtgggatacg ccacatttca tactagcaaa tcgcgtatag
     2581 aatcatataa ttttattttt gatactattt ggagacaggc tgacttgtat gaatccttaa
     2641 aggaggcaaa caagaatcta atattttcat atcaaaaact tgaggaacat gatgcaatgg
     2701 aaaaagaatt tatcaatctt gccgctcacg aattaaggac accttctcag tcaattattg
     2761 gttactctga aatgctcaag gatcttccag aaaggaacaa acagtacgag gaggctatat
     2821 cgagaaacgc tgagaggctc tattctctcg taactaacat gctcagtatc gcacgaatag
     2881 aatctcagac tatgaaactt aacaagacaa cttttgactt gaatgtaaag attgaaaatg
     2941 tgattagaga tgttagtcag caggttgaat tacggaaagc cgacaaggta agaatagatt
     3001 ttacacccac tagcagaatc aatattattg ctgacaaaga aaaaatattt caagtctttg
     3061 caaacttgct caataatgca ataaagttca caaatgaggg ctctataaat attagtataa
     3121 aacagaaaga gaaaagaaac gaagcaattg ttacgattaa agatagcggc tctggtatag
     3181 atgcagagat aattccacac ttattttcca agtttaagac taaatctgag aaaggtttgg
     3241 ggttaggact atatatttca aagaacatcg ttgaagcaca tcatggtaaa atagaggcgt
     3301 ataacaatcc taattcaaag ggagcaacat ttgtagttac gttacctctg aaaggataat
     3361 atttctagat tgactgggtg caataataat attcattcaa actaacgcaa tcagaacttt
     3421 agagatcgag ttacgaatta atcaaatttt agaaattctg aactaaaata ctactataag
     3481 cactaaaagt atgaaataga ctataaagat atcaaaagca gatcaggaca tcaagtgaaa
     3541 tgaaacgaaa aacatctaca gactaagaat cataaataat tggctggcac ctaatgtcac
     3601 aataactggg aaccagccaa taggaagtgg tcatatacta tcagaaaata gataactcct
     3661 caatttcaac aaatttctaa ttaaatattg ggttactacg ccaaatcaga gcagtttctc
     3721 aaaagtctga cacaaaattg cctaaaggaa tggaatcgtg aatcataagt ctgagctgtg
     3781 cagaatttgg aatgaaaata gattatcata aaaaagttta taaaaaaaca tctcttatac
     3841 agtgttccaa atatgcgtaa gcataggagt tggtgggggt gcattagaga tagcaattaa
     3901 caatcgaatt gttagtattg tagatgatga gcttgatatt acagaattat ttcgagatgc
     3961 aatatgtgat agcattgacg gaatatcagt tgtgaccttt aacgatccac aagctgcatt
     4021 agagcatttt gcagatcata aaagtgatta tgcactggtt atttctgatt tgagaatgcc
     4081 aagtcttaac ggtttagaat tactaaagag aatcaaaaat gcaagtccta atgtaaggac
     4141 cattcttatg agcgcctttg attatgaatt tgacgaatta tatcgaacat actcggacgc
     4201 gggtataata gactcattga ttgaaaagcc agttaccatt gatgcgttat gccaaagagt
     4261 aagggatgaa tttcaagtgt accaattaaa gttacatcta aggtaagatc gtattatttc
     4321 tctttggcat ctaggattat gaaacctggt tcctattcat cagactaacc atagtacttt
     4381 cgattttgtc cagtttcact ggttttaaaa gaatatctac attctttcca tgaaaatttg
     4441 ggttttttga aatttcttta tgtaaatttt cgtaggcggt aatgaataaa ataggtgcag
     4501 aaggaaactt gtctaaaatt tgaattgcaa tatcaattcc attcttgttg ccaggcaatc
     4561 tatagtcaat caagtatatc tcacattttg cctcatcaat ttcttcaatc attacatcac
     4621 catcgaggta cattgttgtc acgtcatgtc cctttcctga gagaaaatct ttatagagta
     4681 tcaaaatgtc ttcttcatct tcaacaatca ttacttttaa tttcttattg ttcattttcc
     4741 atgtcggtga ttgtgtagaa tatcaagtta taatgcaaga ttggtgtacc ttggcaaata
     4801 actttccata gactacaatc actaactaga actacattcc ttaaaaacat gtaacttgat
     4861 agccaatttt ctggaatgga taatatagga tgagtgtcat actatgttta atcgacttgg
     4921 aggctcagat ttagtattga taaaagatct ggtaaatccc accaatttca atctcatggt
     4981 aggaaaactt ggagatgttc taacaagagc attggacctt ccattaggtt atgcaattaa
     5041 ttggggtaga atttggtcgc tatggccagt aca
//
LOCUS       DASPFX010000376         4393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2096549, whole genome shotgun sequence.
ACCESSION   DASPFX010000376 DASPFX010000000
VERSION     DASPFX010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4393
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2096549"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1310
                     /locus_tag="VD694_08040"
     CDS             <1..1310
                     /locus_tag="VD694_08040"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HXW12695.1"
                     /translation="TPNEIMISESQERMVYIINKSKLSTFNEIFTKYGIMYSIIGKVR
                     GQDILKILYDGKPIASLSCNLMVNAPLSKWKSKRPSYLDRLKTKIKLEMLDNYNGILL
                     RLLANPNIGNKAWVYQQYDHEVGLRTVVKPGANASVIRVNDNKFVAIKLDGNSKHCYL
                     DPYQGMLGCLSESCRNVACTGAQPIGILDHLQFGSPENPHIYWTFIKSIKAIIDFCNY
                     MKIPVVGGKVSFYNETTNSPIKPSPVIGTIGLIKDRDHITNNIPNKGNRLFILGKTRE
                     ELGGSEYFELIDHTEYGRVPKVNLKTDKENRSAVLDMIEKGLIDFVHDCSKGGIATAL
                     SELGIFGNIGIDVDLKNIPNSCTRNDFLLYSESHSRFIIGTSNPDKLKKFMRNRKCSF
                     SEIGKTDSTTRLNIHNSGKEVINLPIKELANRYNTMSSMMDGP"
     gene            1367..2803
                     /locus_tag="VD694_08045"
     CDS             1367..2803
                     /locus_tag="VD694_08045"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HXW12696.1"
                     /translation="MVHENCGVIGFFSLNGHNVIPYVIDSLRALQHRGQESWGFAVPS
                     KPPYKSLGLVSASRNFKSIIGKFNSHAAIGHVRYSTFGKSNLDNAQPLKIKDLCIAHN
                     GTIANVEELSNMVGGCTFSPQTMTDTLLAAQRLMMHLEKNDNMVQALHVLKEEMIGSF
                     CFTLLTDDGSVYAVRDTRGFRPLVLGHIEETNTYMISSESCAIDTVGGKLVGDIQPGE
                     LLRISSKGIERQQFSTSEYHSHCSFEFTYFAHPSSTIEGVNVYEARKKMGHYLARKYP
                     VKDADVVIPVPDSARPAALGYAEELGIHFEEGLLKDRYRKKGSMRSFIEPYHGERVEI
                     NKGIIPIPEVIKGKNVVVIDDSIVRGTSSQSIIKTLRSAGASKISLIVTFPPIKYPCY
                     AGIDFPSQDELLAFQNQNKENGDIESEIAKSLGADKVIYNDTVTLAQAIGIDEKELCF
                     SCSNGNYQPLGIKPVFKTRAEVKGDSEN"
     gene            3001..3258
                     /locus_tag="VD694_08050"
     CDS             3001..3258
                     /locus_tag="VD694_08050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12697.1"
                     /translation="MREDQSLFTNSRIILTNVGKQPVTNVFVDYGIKNETILTINPGE
                     KISLSPPEGSNLNLVRIIADNGINITSGYRTPIKMPGMMGS"
     gene            3410..3814
                     /locus_tag="VD694_08055"
     CDS             3410..3814
                     /locus_tag="VD694_08055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12698.1"
                     /translation="MKSSAYKALCQEIIKIDSSIRSAGIINEDGIILHISHRKGIKPL
                     LSSEERAQYAITAATRQFTRLRWEVLLGKIQYASSHYTKLIRATIPVTDDNRKLSFVI
                     ILSLDAGTDNFHEIIVEKVIPIIKERKSDLKS"
     gene            complement(3868..>4393)
                     /locus_tag="VD694_08060"
     CDS             complement(3868..>4393)
                     /locus_tag="VD694_08060"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HXW12699.1"
                     /translation="SFDTVDILVNNAGVINDPVPFHKMNENQWDNLISTNLIGTFQMT
                     KAVLPIVMEKRIGNIINISSLLGIRAIPNVPLSIYGATKAGIIMFTKSIAVEYGPYGI
                     RCNCIVPSTIRSPMIEPYLQDEKSKEQLESSFPLRRIGNTSDISGAVVYLCSDDANWI
                     TGTILTIDGGFSAK"
BASE COUNT         1482 a          748 c          845 g         1318 t
ORIGIN      
        1 taactccgaa cgagattatg atttcggaat cccaagaaag aatggtgtac atcataaata
       61 agagcaaatt gtcaacattt aatgagattt tcacgaaata tggtataatg tactccatca
      121 ttggtaaagt aagaggccaa gatattctca agattctgta tgatggaaaa ccaatagcta
      181 gtttatcttg taatttgatg gtcaatgctc ctctatctaa atggaaatca aagagaccga
      241 gttatttgga taggttaaaa acaaaaatca aattggaaat gctggacaat tacaatggca
      301 ttttgttaag attacttgcg aatcctaata ttggtaataa agcttgggtc taccaacaat
      361 atgaccatga agtaggtttg agaactgtag taaaaccagg cgccaatgca tcagtcataa
      421 gagtaaatga taacaagttt gtggctatta aattagatgg aaattccaaa cactgttatc
      481 tagatcccta ccagggaatg ctagggtgtt tgtctgaatc atgtcgaaat gttgcatgca
      541 ctggagcaca acccattggc atcctagatc atctccaatt tggaagcccc gagaatccgc
      601 atatttattg gactttcata aaatcaataa aggcaattat tgatttttgt aattatatga
      661 aaattccggt ggttggaggt aaagtcagtt tttacaatga aacaacgaat tcccctatta
      721 aaccgtcccc agtgattggt actattggtc ttattaaaga tagagatcac ataactaaca
      781 atataccaaa caaaggaaac aggttgttca ttctaggcaa aacaagagaa gaattaggtg
      841 gctctgaata ctttgagtta attgaccaca cagaatatgg aagagttccc aaggttaatt
      901 tgaaaaccga taaagaaaat agatcggctg tgctagatat gatagaaaaa ggtctaattg
      961 atttcgtaca tgattgttct aaaggcggaa ttgcaacggc actgtctgag ttgggtattt
     1021 ttggaaatat aggaatagat gttgacttga aaaatattcc aaatagctgc acccgtaatg
     1081 actttttact ctattctgaa agccattcga ggtttataat aggtacgagc aatccggaca
     1141 agttaaagaa atttatgaga aatagaaaat gtagtttttc tgaaatcggg aaaacagatt
     1201 ctacgacgag actaaatata cacaattctg gtaaagaagt gataaatctg ccaatcaaag
     1261 aactagcaaa tagatacaac acaatgagta gcatgatgga tgggccctag acacaattta
     1321 attggagtaa attttaatta aatccatctg gaagaattga tagttaatgg ttcatgagaa
     1381 ttgtggtgtc attggttttt tttcacttaa tggccataat gtgatacctt atgttattga
     1441 ttccttaagg gcgttgcagc acagaggcca ggaatcatgg ggatttgccg tcccatcaaa
     1501 gccaccatac aaaagcttag gattggtttc ggcttcaaga aattttaaga gcatcattgg
     1561 aaaattcaat tctcatgcag ccataggtca tgttagatac tctacttttg gaaaaagtaa
     1621 tttggataat gcacaaccat taaaaataaa ggatctttgt attgcacata acggcaccat
     1681 agcaaatgtt gaggaattgt ctaatatggt cggaggctgc accttttcac cacaaacaat
     1741 gaccgataca ttacttgcag cacaaagact gatgatgcat ctcgaaaaga atgataacat
     1801 ggtccaggcg ttacatgtgt taaaggaaga gatgatcgga tctttctgct ttaccttatt
     1861 gactgatgac ggttcagttt atgctgttcg cgatacacgc ggattcagac ccttggtttt
     1921 gggccatatt gaagaaacca acacttacat gatatcttca gaatcatgtg ctattgatac
     1981 tgttggaggt aaacttgttg gagatattca acccggagag ttattaagga ttagttcaaa
     2041 aggaattgaa agacaacaat tttccacaag cgagtatcat tcgcattgtt catttgaatt
     2101 cacatatttt gcccatccaa gcagtactat agaaggtgtt aatgtttatg aagcaagaaa
     2161 gaaaatgggg cattatttgg cacgaaaata tcccgttaaa gatgcggatg ttgtcatacc
     2221 ggtccctgat tcagcaagac cagcagctct ggggtatgcg gaagaattag gaattcattt
     2281 tgaagaggga ttattgaaag accgttatcg taaaaagggt tctatgcgaa gtttcattga
     2341 gccttaccat ggagaacggg tagagattaa caaaggaata atcccaatac cggaggtcat
     2401 taagggaaaa aatgtagttg tgatagacga cagcatagtt cgaggtacaa gttctcaatc
     2461 catcataaag acactacgtt cagcaggagc atcaaaaatt tcgctcatag ttacttttcc
     2521 acccataaaa tatccttgct acgcaggtat cgattttcca tcacaagatg aacttttggc
     2581 gtttcagaat caaaataagg aaaatggaga tattgaatct gaaattgcaa agagtctcgg
     2641 tgcagataaa gtaatttaca atgatactgt tacacttgcc caggcaattg gaattgatga
     2701 aaaagaatta tgtttttctt gctccaatgg aaattatcaa ccattgggca taaagccggt
     2761 atttaagaca cgtgctgaag taaagggaga ttcggaaaat tgattacttt tcaaaaaata
     2821 caatttattt ttggcaataa atactcaact gcttaaatat ttgagaatca aactaattta
     2881 gatttgaaaa gactttattt ggtttccatt tgcattgccg gcgttgcttc cttgtctttt
     2941 ctttcatatt ttattcttca atattattat cgtccagatt attcgttgga ggttgacgcc
     3001 atgagagaag atcagtctct tttcaccaat agtaggataa tacttacaaa tgttggaaag
     3061 caacctgtca caaatgtctt tgttgattat ggaatcaaga acgaaactat cctgactata
     3121 aatcctggag aaaaaatttc gctttcgccg ccggaaggaa gtaacctgaa tcttgtcagg
     3181 attattgcag acaatggaat aaacataacc tctggatata gaacccccat aaaaatgcct
     3241 ggaatgatgg gatcgtaaat atgatggttt gttttccctt ttttcatcca aaataattat
     3301 atcataattt gttttgtcta caaggtctgt cgaactctag ttccacattc tcaggtacaa
     3361 taatcctaac agcaagacat taaaattacc gcaagataat ttttttctat tgaaaagttc
     3421 ggcgtacaag gcattatgtc aagagataat taagattgat tcatcaatca gatctgctgg
     3481 aatcattaat gaagatggta ttatattgca cattagtcat cgcaagggta tcaaacctct
     3541 tctttcctca gaagaaagag ctcagtatgc aataactgca gcaacaaggc aatttacaag
     3601 acttagatgg gaagtattgt taggcaaaat acaatatgca agttcacatt ataccaagct
     3661 aatacgagct acaattcccg taaccgatga taataggaaa ttatcatttg tgataatact
     3721 ttctcttgat gctgggacag acaattttca tgaaataatc gtggaaaagg taattccaat
     3781 aataaaggaa agaaaatcgg acctgaaatc ctgaacaagc aggaaatgat ttttcttttt
     3841 atttgttctt cttgttcacg ctaatagtta ttttgctgag aaaccaccgt cgatagtcag
     3901 gattgtaccc gtgatccaat tagcgtcatc agaacacaaa tagacaacgg cgcccgaaat
     3961 atcacttgta tttcctattc ttcttaacgg aaaagacgac tctagttgct ccttagattt
     4021 ctcatcttgc agataaggtt caatcatggg gcttcttatt gtagaaggta caatgcaatt
     4081 gcatctaata ccatacggcc catactcaac tgcgatactc tttgtaaaca ttatgatacc
     4141 agctttagta gcaccgtaaa ttgaaagtgg cacatttggt atcgcccgaa ttcccaacag
     4201 tgaggaaata ttaataatat ttccaattct cttctccatt acgattggta ataccgcttt
     4261 agtcatttga aaagttccaa ttaaatttgt cgatattagg ttgtcccact gattttcatt
     4321 catcttatga aacgggactg gatcattaat gactcccgca ttattcacaa gaatatctac
     4381 tgtatcaaag gag
//
LOCUS       DASPFX010000377         4025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1811780, whole genome shotgun sequence.
ACCESSION   DASPFX010000377 DASPFX010000000
VERSION     DASPFX010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1811780"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(190..516)
                     /locus_tag="VD694_08065"
     CDS             complement(190..516)
                     /locus_tag="VD694_08065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12700.1"
                     /translation="MSQNNEDLEEKKLLGSGGYAIAKLTENEEIKSNLGVPQLFLANV
                     GRLPEDRFLRYYCNKCGREHYGCPLLVYEVPNEKMAENVILVEKGEYKCRNCNNTIAQ
                     YRKFSQ"
     gene            complement(530..919)
                     /locus_tag="VD694_08070"
     CDS             complement(530..919)
                     /locus_tag="VD694_08070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12701.1"
                     /translation="MMKDNDSKNIDALLRLYNLYDEHRHSILWFLEDLDANSYQEYLQ
                     KYPGSSNERSQFIAVCGFFELSGTIVKHKLIDLNLYFDMFNPTPFWQKAEPIVKGMRK
                     KRPHIYENFESLNDKRIAWAKKRRKKI"
     gene            complement(1063..1272)
                     /locus_tag="VD694_08075"
     CDS             complement(1063..1272)
                     /locus_tag="VD694_08075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12702.1"
                     /translation="MKTIVAVAIMAIAVSIVGVGPLAITDNIDARESGNLPAGSSGGE
                     SEGSGIYTTVCGPDAAHACQTSTGQ"
     gene            complement(2180..3241)
                     /locus_tag="VD694_08080"
     CDS             complement(2180..3241)
                     /locus_tag="VD694_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HXW12703.1"
                     /translation="MKAAVFSEYSKDFAKVVKITDIDPPKLKSNEVMIKVESAAFNYN
                     DLWAVWGEPIKIPLPHISGTDIAGTVTEIGSGVTTIKVGDRVVSHANLSCRTCYYCTS
                     GREYDCSNRLVWGFQTGPLWGGFAQITKLPEVNVIKLPNDVSYNDAAAIAMVGLTTWH
                     MLVGRAKIVPGQTVLIMGGTSGVGMVGIQIAKLYDCNVIATAGNKEKMDKCLEIGADY
                     VVNHRDADWHKAVRGIAKDKIDEEGIDVIFEHIGKSVFAKAISLLKMGGTLVTTGATT
                     GYNSNIDLRYLFFRGLNLIGSTQGTKAELEDVISWTSKGRIRPVIDVVLPFGRITDGY
                     AKMASGDHFGKIVITPQSI"
     gene            complement(3633..>4025)
                     /locus_tag="VD694_08085"
     CDS             complement(3633..>4025)
                     /locus_tag="VD694_08085"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12704.1"
                     /translation="LVGGDDSDVIQGGFGGDFLFGGSGNDELYSGAGDDILFGSKGAD
                     YFDCGEGYDTVIDFGPTKGDTNSDNCEVVLTHGSQNTEIICDAGSESTQFHSMTNSEM
                     EPNKSVTSSNTVAVPNPLDMLCDEDEET"
BASE COUNT         1193 a          870 c          657 g         1305 t
ORIGIN      
        1 ataacgtgct ccgagaatta gtgaatgtaa aggatcaatt ttagtggagt attctgtctg
       61 gaagtaatag taaaaaaggg aatgtgcgat caatttgtat aatattccaa ctgcttggca
      121 aagaataaat cgaattgtct acctgtcttg cagaaactgc cttcattatc acatccataa
      181 tatcattctc tattggctaa atttgcgata ctgagctatg gtattgttgc aattccggca
      241 tttgtattct cctttttcaa ccaaaataac attttcagcc atcttttcat ttggaacttc
      301 ataaacgagt aatggacagc cataatgttc cctaccgcac ttgttacaat aatatctcaa
      361 aaatctatct tcaggcagtc ttcctacatt tgctaagaat agttgcggca ctccaagatt
      421 tgattttatt tcttcattct ctgtcagttt ggcgatcgca tagccgcctg agcctaacaa
      481 tttcttttcc tctagatcct cattattttg actcatttct attctcccat catattttct
      541 tccttctctt ctttgcccaa gctattctct tatcatttag agactcaaag ttttcgtaaa
      601 tgtgcggtct cttttttctc attcccttaa ctattggttc ggccttttgc caaaatggtg
      661 taggattaaa catatcaaaa tagagattta gatctatcaa cttatgtttt acaatagtac
      721 ctgacaattc aaaaaaacca caaacagcaa taaactgaga tcgctcattt gaagaacctg
      781 gatatttctg taggtattct tggtagctat tggcatcgag atcttctaag aaccagagta
      841 ttgaatgtct atgttcgtca tataggttgt ataacctaag caatgcgtct atattcttac
      901 tatcgttatc tttcatcatg tttttcttct atgtcataaa gttaaaacat ttctgttagt
      961 atagctttat gatagccacg atccctctta actatcgtct ttggtgattt ggccctaaaa
     1021 aaaagaagca tgaagtttag ttactcccta ccttatgtga tgctattgtc cagtagacgt
     1081 ttggcatgca tgtgctgcat ccggaccaca gactgtggta tagatcccgg atccttcgct
     1141 ttcaccacca gaggatccag ctggtaagtt gccactttct cttgcatcta tgttgtctgt
     1201 tatagcaagc ggaccaactc caacgattga taccgctata gccataattg ctacggctac
     1261 aatcgttttc atatgaatca ataaatcata cgcgtaaatt agtaatatag acgcgtcaac
     1321 aatgatcttt atgtcttaag aatgtacttg aatgcaatac tttattacat tcagcagact
     1381 tttccgaata tagtgcaggt aattaatgcc gcctcctcca caaacgcaga aataataacc
     1441 gagtctacaa accctctgat ttatggacac tagaagacga cctgtttttt ctgaaatggt
     1501 gtccaaatgt acgagatatg tgttatcacg ctatttctag agacatgtcg gctcgaccgc
     1561 atgagatact agacttgaag attaaggaca ttgtaatcta aaatgtcgga acaaaacagt
     1621 acgcagaagt cttagttaac gacaaaacag gaactaggca cctgccatta attgattcac
     1681 tgccttacat caaggaatgg ttagaccgtc acccacaccg caataaccgt gaagcctatt
     1741 tcatttgtag tttgaacaga aaaacgttcg gacaacaaat gcgccttagg ggtttgcaat
     1801 atatctattg gcattacaag acgccaaagg aagacaagca acacattgat gaattattgc
     1861 agaaaccttg gaatctctat attagaaggc atagcagtct tacacagaaa agtaagtttc
     1921 taaaggaaaa ccttgaatcc ttctccgata ccagttgcag acgacgttat gctaggatca
     1981 actacaaata ataacaaata caataacaac aataacaaca atgatatcag tatgctgacc
     2041 atgtcagctt cttgagccta gaatatctag ctactatgcc tgaataccag taataggaac
     2101 ataattgcaa gaaaaccgaa ctatgttaat ttcgaagaaa tgttgaaccg actgtcacgg
     2161 tattcgctgg tggatcaatt caaatagatt gtggtgttat tacgatcttt ccaaagtgat
     2221 ctccacttgc catttttgca tagccatctg taatccgacc aaatggaaga actacatcaa
     2281 ttaccggtcg tattctgcct ttactagtcc aagagatcac atcttcaagt tctgctttag
     2341 tgccttgggt ggaaccaatt aggtttaagc ctctaaagaa gaggtatctt aaatctatgt
     2401 tcgaattata ccctgttgtt gcaccagtag ttaccaaagt tcctcccatt tttaacagcg
     2461 atattgcttt ggcaaaaaca gattttccta tatgctcaaa tattacatct attccttctt
     2521 catctatctt gtcttttgca atacctcgta ctgccttatg ccaatcagca tctctatgat
     2581 taaccacata gtctgcgcca atctctaaac atttgtccat cttctcctta tttccagcag
     2641 tagcaattac gttacaatca tataattttg caatctgaat tcctaccatt ccgactccac
     2701 ttgtaccacc catgattaag acagtctgtc caggtactat ttttgctcta cctactaaca
     2761 tgtgccaagt cgttaatcct accatagcaa tggcagcagc atcattatac gagacatcat
     2821 ttggcaattt aataacattt acctctggaa gctttgtaat ttgagcgaag ccaccccata
     2881 gcggacctgt ctgaaaaccc catacgagtc tattgctaca atcatactct ctgccagatg
     2941 tacaataata gcaagtcctg catgatagat ttgcatgaga tactactctg tctccaactt
     3001 tgatagtggt gacgcctgag ccaatttcgg tcactgttcc tgcgatatcg gtgcctgaaa
     3061 tatgtggtaa tggaatctta ataggctctc cccatacggc ccataaatca ttataattga
     3121 atgcagctga ctctaccttg atcatcactt catttgattt taattttgga ggatcgatat
     3181 cagtaatttt taccactttt gcaaaatcct tgctatactc agaaaaaaca gccgccttca
     3241 ttggttctga ctcctactat tgcatgtttg atatattaat ttcgtatgca tcttccttga
     3301 ttaatagatg taatatgtac tatcattttt ccaagtacca atttatgaga aagactggtt
     3361 agcttttctc ttcttacata tgatgtaggc atgaatcgta ctgatataag gtaacgacag
     3421 tatcatacta gtattctata taaaataggg tgtatacaag tttcacattg cacgttatgc
     3481 taatccgcaa atctatcact ggcttgacta gtattaggtt cattactctg attcctttaa
     3541 tctgagattc ttatagctag tggtatcatg atctaactgg agtcctgttg aagtccaagg
     3601 tttaataggc tacatattag aatatatcat catcatgttt cctcatcctc atcgcatagc
     3661 atgtccaatg gattaggaac agcaacggta ttgctactgg tcacactttt attaggttcc
     3721 atttcactat ttgtcattga atgaaactgt gtgctctctg aaccagcatc acatattatt
     3781 tctgtatttt gagatccatg ggttaatacg acttcacagt tatcagaatt tgtatcccct
     3841 tttgttggtc caaaatctat aacagtatca tagccttctc cacaatcaaa ataatctgca
     3901 cccttacttc caaagagtat gtcatctcct gccccagaat agagttcatc attgcctgat
     3961 cctccgaata ggaaatcacc cccaaaaccg ccttgaatta catcagagtc atctcccccc
     4021 accag
//
LOCUS       DASPFX010000378         2389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1384947, whole genome shotgun sequence.
ACCESSION   DASPFX010000378 DASPFX010000000
VERSION     DASPFX010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1384947"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            382..1260
                     /locus_tag="VD694_08090"
     CDS             382..1260
                     /locus_tag="VD694_08090"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HXW12705.1"
                     /translation="MGELLLGCSGWNYSDTPDKGGWVGIFYPDRNTKRLRYYSQFFDT
                     AEMDSIFYEKFYSHMTKGTFIGMVKATPENFQFSVKVPETITHRKRLEVGKGAITDFE
                     IFLDKTSPLKNSDKLGAILLQLPPSFTVNDFKNIERFLDKLPSGYHYAVEFRHPSWKT
                     EGPWDMLKHYNIAAVMTDSPAKENLEFLSEVTVTSADHSFIRFHGRNTKGHYWYDYLY
                     SKEELRPWVEKIEEVKKQTKVLRAYFNNHYGGAAVINALQFKEMLGNKLSENERNIIE
                     YAQEYLSSRQLTLSVL"
     gene            1269..1445
                     /locus_tag="VD694_08095"
     CDS             1269..1445
                     /locus_tag="VD694_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12706.1"
                     /translation="MPSLLCPLILLFRVKVWKKFKLDLVNDLVKEAIEALCKRKRWQN
                     TFRDIMKAKKIQSK"
     gene            1594..1782
                     /locus_tag="VD694_08100"
     CDS             1594..1782
                     /locus_tag="VD694_08100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12707.1"
                     /translation="MMNTKLFFMAVAIVAAFSIAVAVAGPLTITTPAMAQNVTGDNAI
                     TMAGNMTAANQTAGNWTK"
BASE COUNT          841 a          417 c          444 g          687 t
ORIGIN      
        1 gattgaactt ctgactactc aaaaataggt ctactctccc tcccctttat ctgctctatg
       61 ttttattata tttgattact atcctagttt atgctaatgc atgagtatat ttcagatatc
      121 cattttccat atagtgagtg catagattgt agaaagagaa gtgctcatat ttgtactaga
      181 tgtcattatt gttattcctg tcaccccaat attgaaaggt tagaaaaaat gaaaaaatat
      241 actcaagtaa gctaccaaac accaaaacaa ctatttacga aatacaaaaa gaatggacaa
      301 ccaagatgat aagatgcaaa atgactaaga aagacaaata catagtatga acacaatgga
      361 tgttaattcg agaatataga gatgggagaa ctccttttag gctgttctgg ctggaattac
      421 agcgatactc cggataaagg aggttgggtt ggaatattct atcctgacag gaatacaaag
      481 cggctcagat actattcaca gttttttgat actgcagaaa tggattctat attctatgag
      541 aaattctatt ctcatatgac taaaggtaca tttatcggaa tggtcaaagc tactccagaa
      601 aacttccaat tctcagtaaa ggtaccggaa acaattacgc ataggaaaag gttagaggtt
      661 ggaaaaggag ctataacaga tttcgaaata tttcttgaca aaacttctcc tctaaagaat
      721 tcagataaac ttggggccat tctcttacag ctaccaccaa gctttaccgt caatgacttt
      781 aagaatatag aaagatttct tgacaaatta ccgtcaggct accattatgc agttgaattc
      841 agacatccat cgtggaagac agaaggccca tgggatatgc taaagcatta caatattgct
      901 gctgtcatga cagattctcc tgcaaaagaa aatctagaat ttctatctga agttactgtg
      961 actagtgccg accattcgtt tattagattt cacggaagaa atacaaaagg gcattactgg
     1021 tacgattatc tatacagtaa agaggaatta agaccatggg tcgaaaagat agaagaagtc
     1081 aaaaagcaaa caaaagttct cagagcctat tttaataacc attatggagg cgcggctgta
     1141 atcaatgccc tacagttcaa ggagatgctt ggtaacaaat tgtcagaaaa tgaaagaaat
     1201 ataattgaat atgcacagga atatttgtcc agcagacaat taacattatc agtgttgtaa
     1261 aattattgat gccgtctcta ttgtgtccac ttatcctatt attcagagtc aaagtatgga
     1321 aaaagtttaa acttgacctt gtaaatgatc ttgtaaaaga agcaatagag gctctctgca
     1381 aaagaaagag atggcagaat acttttagag atattatgaa agcaaaaaag attcaatcca
     1441 aatagggcca ttgataatag agcagcgttt gggcttgtgt tagtttcaac ttcctaatgg
     1501 aattattatt agcagtaaag cggcaaaacc aaacctttac tttccattat atttgaacgg
     1561 tagattctta ttctctacgt attagacaac aagatgatga acacaaaatt gttctttatg
     1621 gcagttgcaa ttgtcgcagc ctttagtatt gcagtagctg tggccggtcc tcttacaata
     1681 accaccccag caatggctca gaacgtaaca ggggataatg caattacaat ggctggcaat
     1741 atgactgcag ctaaccaaac tgccggcaat tggaccaaat aaaaggaaga ctccttaatc
     1801 cttatttttt atttttaata catcaatttg ttattagtcc aatccatata acactaatta
     1861 caggtatatt gctacgctcc gtaggtgtga cagtatctca aatggttaag taaaccagtc
     1921 gatatactat ttacacgtaa cacacaaggc tgaagaagct agaactagct aacataaacc
     1981 ctattttccg ttgtttattt gaatggcaga cgctattctt gcaaaagtgg aagatgggaa
     2041 cctgatgaag agctacagca atcggaacct tatgcatttt ggctaaccca tttgctttag
     2101 gacaagacaa gaaggacaac ttgcataatg aatgccctga ggcaagcaaa caaacctgat
     2161 aacattgcaa atttaataca cccataatgg tcagagaaag tgtagtgtat taatagtaag
     2221 tgaaatggag cattagtgga tatttaatat attgcagttt gaggagaccg atccttaaca
     2281 tttacttccc agcagcttta cttatatgtc ctaataattg taaatggtat gacttggaga
     2341 gtaataacaa cattctatca ggagtagaat gtaacaccta atgacaccg
//
LOCUS       DASPFX010000379         3354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_331264, whole genome shotgun sequence.
ACCESSION   DASPFX010000379 DASPFX010000000
VERSION     DASPFX010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331264"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VD694_08105"
     CDS             <1..848
                     /locus_tag="VD694_08105"
                     /inference="COORDINATES: protein motif:HMM:NF045300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12708.1"
                     /translation="SQIAVSGFSGYVTEVLVLKYGSFDGVLQIFSELKPNYIISLDPP
                     DEKVIKKFTSPIIIIDPIDSNRNLGAAISADCVARFVLASRQFLKNPSIKFMKKTAKL
                     RSKIVKQIEPNLLIIEFKIQKRSPDILWGQLKRKLSSISKMLSNSRFEIIKKYCYTDE
                     EKHAVFIFMIEFSNLPKITLNRGPEVYLKTETDSYIKKRGGSSIMMWTDSMRIQSIEE
                     TKITSIKEYANEIIKKDIQSASQVGITSDLKNGYSIYLGNEKKSDDFVVTAINHMIGD
                     GEFIR"
     gene            829..1575
                     /locus_tag="VD694_08110"
     CDS             829..1575
                     /locus_tag="VD694_08110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12709.1"
                     /translation="MENLLDSKNKESLKFLLTFPLFDQDTFEIRKNELLSLDINGIFS
                     TGNLQLNKIFILGKGSVGLVTLARYKRRYFALKIRRTDANRPNMFDEAVYQSLANSSG
                     VGPFLVNFSENFILMEFVRGSNIIDWYSSGRISKKRMMKCAAHILEQCYLLDCLKLDH
                     GQLNRLDCHIIISKDDKPTIVDFETSSSQRRVSNITSASQSIFLNGPIFSRLQNLIPY
                     DRKQIMKKIKGYKTEMNQERFEDILSMLGP"
     gene            1666..2409
                     /locus_tag="VD694_08115"
     CDS             1666..2409
                     /locus_tag="VD694_08115"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HXW12710.1"
                     /translation="MSNSQTFVIKTLKKMNLKGGTVIDGFATTGITNTIAAECILHSI
                     NTQLVATIESSYFSQLAVVRNSIPYFPVRIYANEELKTSIFISEISMEPSVYFFIGTT
                     MLNWAKENECELIISSSSIVNPPDQANPAGSKEYSIAGIGNTVGARNRLKDAKISLLK
                     NGTIGGIPAVLLNQSPQLGIDTVILLVKIIEGIPDFRAAAELSTTISKLVPGVSCNVP
                     LLLQEAEKIEKEITKVKTQDTETEMNAYG"
     gene            complement(2486..3010)
                     /locus_tag="VD694_08120"
     CDS             complement(2486..3010)
                     /locus_tag="VD694_08120"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HXW12711.1"
                     /translation="MNDVEFLNRLLTLNPSLRFSGLVEKSGHLNASVNREGINEHLKG
                     RSPEISYSQSAYIVELRKIFENELGTLNSVIYIYDKVVMFTIPIKNHIVVFSADSGIN
                     IDSVFKQVQSFIKNSEAELDLELGVKNISQEKKESVRNLYDSGISEEMIAEQVDLNLA
                     TVKNLIKIITTNSK"
     gene            3154..>3354
                     /locus_tag="VD694_08125"
     CDS             3154..>3354
                     /locus_tag="VD694_08125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12712.1"
                     /translation="MAEDISSTSSNTIPFPTLTIVYLVNEAEQLIDEISQKYNNITVE
                     DCNGFFNDGVKRDYKKITIWSQG"
BASE COUNT         1190 a          572 c          589 g         1003 t
ORIGIN      
        1 gctctcagat agcggtttca gggtttagtg gatatgtaac agaggtactt gtcctaaaat
       61 atggttcatt tgatggtgtc ctacaaatat tttccgagct caaaccaaat tacatcattt
      121 ccctcgatcc tccagacgaa aaagtgatca agaaatttac tagtcccata ataataatcg
      181 atcctattga ttcaaacaga aacttgggag ctgcaatttc ggctgactgc gtggcaagat
      241 ttgttttggc gtcaagacaa tttctgaaaa atccatccat aaaatttatg aaaaaaactg
      301 ctaaattgag atccaaaatc gtaaaacaga ttgaaccaaa cttgttaata atagaattta
      361 agattcagaa gcgaagcccg gatatcctgt gggggcagct taaaagaaaa ttgtccagca
      421 tttcaaaaat gctatcaaat tccagatttg aaataatcaa gaaatattgc tatacggatg
      481 aagaaaagca tgcagtgttt atctttatga ttgaattttc aaatctccca aaaattacgc
      541 taaatagagg accggaagtg tatctaaaaa cagaaacaga ttcttacatc aagaaaagag
      601 gaggtagttc catcatgatg tggactgaca gcatgagaat tcaaagtatt gaagaaacaa
      661 aaattacttc aataaaggaa tacgctaatg aaataattaa aaaagacata caatcagcaa
      721 gtcaagtagg aataacttcc gatcttaaga atggctattc catttattta ggaaatgaga
      781 agaaatcaga tgactttgtt gtaactgcca ttaatcacat gattggcgat ggagaattta
      841 ttagatagta aaaataagga aagcctaaaa tttctgttga cttttccctt atttgatcaa
      901 gacacttttg aaatcaggaa aaacgagtta ctatcattgg atattaatgg tattttctct
      961 acgggtaact tacaactaaa caagattttc attctaggca agggatcagt tggtttggta
     1021 acactagcaa gatataagag aagatatttt gccttaaaga taaggagaac tgatgcaaac
     1081 agaccgaaca tgtttgatga agcagtttac caatcacttg caaactcatc gggagtaggt
     1141 ccatttcttg tgaatttctc tgagaatttt attttgatgg aatttgtcag aggttcaaat
     1201 attattgact ggtatagttc aggacgaata tcaaaaaaaa ggatgatgaa gtgcgctgct
     1261 catatccttg aacaatgtta tcttctggat tgtctgaagc tcgatcatgg tcagctaaat
     1321 aggcttgatt gccacattat aatatcaaag gatgacaagc ccacaatcgt ggattttgaa
     1381 acttctagca gtcagaggag agtaagcaac ataacaagcg cgtcacaatc aatttttcta
     1441 aatggtccaa tattctccag gcttcaaaac ttaatccctt atgacaggaa acaaataatg
     1501 aaaaaaataa aaggctataa aactgaaatg aatcaagaaa gatttgagga tatactcagc
     1561 atgttaggac cctaattgcc ttacaaaaag atatcatttt atcatgagga atgcatctgc
     1621 attgtgcatt aatattctta agttagtatc tataaatgta atttgatgtc taattctcaa
     1681 acctttgtga tcaagacact aaagaaaatg aatctcaaag gtggaacagt aatagatggc
     1741 tttgctacca caggaattac caacactatt gctgctgaat gtattttgca ttccattaat
     1801 acccagcttg tagcaactat agaatcatct tacttttctc aactagcagt agttagaaat
     1861 tcaataccat attttcccgt aagaatatat gcaaatgaag agctaaaaac ttcaatattt
     1921 atttctgaaa taagcatgga accatcagtt tactttttca tcggaactac catgttaaat
     1981 tgggccaaag aaaatgagtg cgaattaata atcagttcaa gtagtattgt caaccctcca
     2041 gaccaggcta atcccgctgg ttcaaaagaa tactcaattg caggtattgg aaatacagtt
     2101 ggtgcaagaa acagattaaa ggatgcgaaa atttcattac tcaaaaacgg taccatagga
     2161 ggaattccag cagtgctact aaatcagagc ccccagctcg gcatagacac agtaattttg
     2221 ttggtaaaaa tcattgaggg aattccagat ttcagagctg cagccgagtt atcgacaaca
     2281 ataagcaaac ttgttcctgg tgtatcatgc aacgtcccat tactacttca ggaagcagaa
     2341 aagattgaaa aagaaataac caaggtaaaa actcaagaca cagaaactga aatgaatgct
     2401 tacggctaaa atatagttct gggactctat ctgttatgaa attgtcaaga tatttgggtt
     2461 tttgattcga atagttagta ataaactatt ttgaattagt agtaataatt tttatcaaat
     2521 tcttgacggt tgctaaattc agatcaacct gttcagctat catttcttca gatattcccg
     2581 aatcgtataa atttctgaca ctctcttttt tctcttggct aatatttttg acacccaact
     2641 caagatctaa ctcggcttca ctatttttta taaaggattg tacttgtttg aaaactgagt
     2701 caatattgat accactatca gcagagaata caactatatg atttttaatt ggaatggtga
     2761 acataacaac cttatcgtaa atgtaaatga ctgagttaag agtgcccagc tcattttcaa
     2821 atatttttct tagttcaaca atatatgccg attgtgaata acttatttct ggacttctac
     2881 ctttgagatg ttcattgatt ccctctctgt tcacgcttgc gtttaaatga cctgactttt
     2941 cgaccagtcc tgaaaacctc aaagatgggt taagcgtcaa tagtcgattc aagaattcga
     3001 cgtcgttcat ggaacagtat ctagcaacca gaaatatatc agcttttatg tcctaatatc
     3061 aagtctgtat attaatagag cttcaactga acctaaaacg gtcatctaaa ctacgaaaac
     3121 aagatattga tcttaataat tactcaaact agaatggctg aagatatatc ctcaacgtct
     3181 tcgaacacta ttccttttcc tactctcact atagtgtacc tggtaaatga ggccgaacaa
     3241 ttgattgatg agataagtca aaagtataac aatatcactg tagaggattg taatggattt
     3301 tttaacgacg gtgttaagcg agactacaaa aaaataacaa tctggagcca gggg
//
LOCUS       DASPFX010000380         3628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2098155, whole genome shotgun sequence.
ACCESSION   DASPFX010000380 DASPFX010000000
VERSION     DASPFX010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3628
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2098155"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VD694_08130"
     CDS             <1..317
                     /locus_tag="VD694_08130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12713.1"
                     /translation="TIAVMSYEQNIPLKDFTNMTISSINQTGQVMISSSDPITLAGRP
                     GHQLVFSTLPNIGNPISFEILHSWIVIDNKIYVFQYSAESTKFNTYLPTVKHILESFR
                     IE"
     gene            480..1349
                     /locus_tag="VD694_08135"
     CDS             480..1349
                     /locus_tag="VD694_08135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12714.1"
                     /translation="MGKKRKKLIITIVPLTIIAAVILYQVPIAKISNPEYLTKLDKFG
                     IVEIYPTKSGGREWFIDMNNPADDPGFNSGSNITKQLDGSWQINGRLDNDTHVGEVRM
                     EVSRLPGSEEWKNVEMTGYAKILPSNNPNDSLVWSIRGGKHNSTIPCEGTALKGGIDV
                     NGTVSWVKEIWHTGGYTNKRAETQVTEPIIGRWIGWKVVVYNINNNTAVKMESYLDDK
                     ANNHWLKVTDLIDNGGWYADEPDLLFFSVDCGKTKDHIITRGGPLAIFRSDNMTWNFR
                     DLSVREIQPPLSP"
     gene            1509..2294
                     /locus_tag="VD694_08140"
     CDS             1509..2294
                     /locus_tag="VD694_08140"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HXW12715.1"
                     /translation="MPSRSLWQGSISFGLVNIPVKLYAATNNREYVFNQLCKNGHRIR
                     YKKWCPEEEREVPFSEIKKGYEIERDNYIVFEKEELNKIKLKTTHSIDIKEFIEYKEL
                     DPILIDNSYYVAIDTKKGNEKAYALLVKILNENNLVAIGKVVLKDREYVIALRPYQRG
                     LVMHVLNYLDDMKPVDEIPEMGNIKAKLEPQEISLGKVLVQKYRSKEFDIGDYSDTYV
                     QELRKLIEAKSKGKKFVSSVPKEGKPTKDLLEALKASIETKGK"
     gene            2526..2819
                     /locus_tag="VD694_08145"
     CDS             2526..2819
                     /locus_tag="VD694_08145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12716.1"
                     /translation="MEYEDYGKRMLIYAAIAIVGIFFGLQAMFGFPLFKSFESDSVSD
                     ARVVIKDANGNCVLEASDKIPRVLSNCPYDKEDIVSITYKKGTPDIRTHSPKS"
     gene            3438..3593
                     /locus_tag="VD694_08150"
     CDS             3438..3593
                     /locus_tag="VD694_08150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12717.1"
                     /translation="MKINSGGTEIADVVKLTKTNATHVDKVMTAEFALGESDGSICAT
                     KIFDSDS"
BASE COUNT         1304 a          565 c          714 g         1045 t
ORIGIN      
        1 taactatagc tgttatgagc tatgagcaaa atatacctct caaggacttt acaaatatga
       61 caatatcttc aattaatcaa actggccaag ttatgatatc tagttctgat ccaattactc
      121 tcgctggtcg accaggtcat caacttgtat tctcaacatt accaaatatt ggtaatccta
      181 tttcctttga aatattgcat tcttggatag taatagacaa caagatttat gtttttcaat
      241 atagtgccga aagcaccaaa tttaatacct atcttcctac agttaaacat attttagaat
      301 catttagaat agaatagata cgaaaatctt gcactacaca ctcatttgag atgatatggc
      361 aatcgaaata tccattgtaa gaaccaatta caaataataa agcctgcatt tgagtagatg
      421 tttaatagat cgcagaaatt aactaataga aatcatataa cgatggatgt tgaggacaaa
      481 tgggaaagaa gagaaaaaag ttaatcatta caatagttcc attgacaatt atagctgcgg
      541 tcattcttta ccaggttcct attgcaaaga tatctaatcc cgaatatttg accaagttgg
      601 ataagtttgg aattgtggaa atatatccta ctaaatcagg aggaagggaa tggtttattg
      661 atatgaacaa tccagctgat gaccctgggt ttaattctgg ctcaaatatt acaaagcaat
      721 tagatggttc ttggcagata aatggaagac ttgacaatga cacacacgtt ggagaagtaa
      781 gaatggaagt cagtaggctt ccaggatccg aagaatggaa aaatgtcgaa atgacaggat
      841 atgctaaaat actaccatcg aacaatccaa atgattcact ggtctggtcg atcagaggag
      901 gaaagcataa tagtactatt ccttgtgagg gaacagcact taagggaggg atcgatgtta
      961 acggtaccgt ttcttgggta aaggagattt ggcatactgg aggatatact aacaaacgag
     1021 ctgaaacaca agttacggaa cccattattg gaagatggat tggttggaaa gttgttgtct
     1081 acaatattaa taataacacg gcagtaaaga tggaatctta tcttgacgac aaagcaaata
     1141 atcattggct aaaagttacc gatttgattg ataatggtgg atggtatgct gatgagccgg
     1201 atcttttatt cttcagcgtt gattgtggta agactaaaga tcacataata acaaggggag
     1261 gacctttggc cattttcaga tctgataata tgacatggaa ttttagggac ttgagtgtgc
     1321 gagaaattca acctccacta tcgccttaaa ctccatcaat tccagtcctt tcaataatat
     1381 caacaagtgc ttattatcat catccccaaa gatattcagt tataatcggc ttgccaaaat
     1441 tattaccggt ttaaatcacg catctgtgtc caagctctta taatctttgt tgaccagagt
     1501 aataatacat gccatctaga agtttgtggc aaggtagcat ctcatttggg cttgtaaata
     1561 taccagttaa actatatgca gcaacaaata acagggaata tgttttcaat caattatgta
     1621 aaaatggaca tagaatcaga tataagaaat ggtgccccga ggaagaaaga gaggttcctt
     1681 tttcggagat aaaaaagggt tacgaaattg aaagggacaa ctatattgta ttcgaaaagg
     1741 aagaacttaa caagataaaa ttaaaaacaa cccattcaat tgacattaag gaatttattg
     1801 aatataagga actcgatcca atcctaatag ataacagcta ttacgtagcg attgatacaa
     1861 aaaaaggaaa cgaaaaggcc tatgcacttt tagtaaaaat attaaatgaa aataacttgg
     1921 tggccatagg taaagttgtt ctgaaggaca gggaatatgt gatagcatta aggccttacc
     1981 aaaggggtct tgttatgcat gtcttaaatt atctagacga tatgaaacct gtggatgaaa
     2041 taccagaaat gggtaacata aaagcaaaat tagaaccaca ggaaatttca cttggtaagg
     2101 tattagttca aaagtatcgc agcaaggaat ttgatattgg tgattattcc gacacttatg
     2161 tccaagaatt aaggaagctc atagaggcaa agagcaaagg gaaaaaattt gtttcttccg
     2221 ttccgaagga gggaaaacct accaaggatc tacttgaggc tctcaaggct agcattgaaa
     2281 ccaaggggaa gtagtagata cacagaaaaa accccacgtc gattcattat ccctagtata
     2341 tgtagtaacg aactagaata ttggcagtca tttctataaa tgtgaaatga tctttgaatc
     2401 tgatctcttt gcataggagc taaatatttg acaattttca ccatgtgcaa acatagattg
     2461 caaattactc tagataatga gactgacagg aataaatatg ctggatggtt cataatatgc
     2521 agaatatgga atatgaagat tacgggaaaa gaatgctcat atacgcagct atcgcaattg
     2581 tggggatatt ttttggatta caagcaatgt ttggatttcc tttgttcaaa tcatttgaaa
     2641 gtgatagtgt gagtgatgca cgagttgtaa tcaaggatgc taatggaaac tgtgtattgg
     2701 aagcttctga taaaattcca agggtacttt ccaactgtcc ctatgacaaa gaagacattg
     2761 tatcgattac atataagaaa ggtacaccag acattaggac acatagcccg aaatcctagt
     2821 tgcggaaacg gacgacctac attaaagtca taaaaaaggt aatttcaaat tttgtgccag
     2881 atgtaatatt ctaagttcaa taataaagag gtaaaagaat tttcgattgg tatatcccta
     2941 cgcacggaat gcagttgttt gaaacagaat atcagaaaaa acagaaaaca ctatcgtgaa
     3001 gttatcctca taatagaaaa ttattattat cctaagactt gcgcaaagta tagagaacaa
     3061 tcctttaatc tgagtagcgg tgttatggat aggtatgagt aataccaaaa taagtacatt
     3121 cacatgtgtt ttgatttttg ttctagtaat tggaagtata ctcatcgcaa ataattttca
     3181 tgtttataaa actgtgtttg tcggtgcaaa taaacaaagt tcaataatgc tgatttcaag
     3241 atggtattga caaaactgga tttcccttca taaatattga aggtacacca gggggaacag
     3301 tacctcaaaa ggaaaataca ggatacgctt atgtctttga aatgaattag ggaactttcg
     3361 ctgtttcata tgattggatg tttccacaat ggcatacaca cgaaataaca ttggatgaaa
     3421 aagactgcgt gaaatctatg aaaataaata gcgggggcac tgaaattgca gatgttgtta
     3481 aacttacaaa gacaaacgca actcatgttg ataaagtgat gacagccgaa tttgctctgg
     3541 gcgagtcaga tggatcaatt tgtgctacta aaatattcga ctctgattca tagttttcga
     3601 gttaattgca cgtacttttc aaacgttt
//
LOCUS       DASPFX010000381         2200 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1844251, whole genome shotgun sequence.
ACCESSION   DASPFX010000381 DASPFX010000000
VERSION     DASPFX010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1844251"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..687)
                     /locus_tag="VD694_08155"
     CDS             complement(<1..687)
                     /locus_tag="VD694_08155"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HXW12718.1"
                     /translation="MKYDIIKQISSGSFGTIYEVMVEHEEDGVTTSTTKCVLKELTRI
                     DPLSKERFEREIKILPELNHPNIVNILYWNIGGDPPKFLPYYIMEYLKGGSLRKYMDE
                     KFKADRKFVFEPTWAISKIILPICSALAQAHSSGVYHRDLKPDNIIFNDDTKSSIKVA
                     DWGLVKGDAIDKKSLELTAVTSEGQIGGTPGYCSPEQWFAFNKEEIDGRTDIYSLGIL
                     FYEMLTRKRPS"
     gene            1937..2083
                     /locus_tag="VD694_08160"
     CDS             1937..2083
                     /locus_tag="VD694_08160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12719.1"
                     /translation="MEILMLLGMHSRAQQHTKGLARINVNNAKTIANTARETVEFTAS
                     NKQR"
BASE COUNT          687 a          417 c          393 g          703 t
ORIGIN      
        1 ggagggccgc tttctcgtta gcatctcata aaataatatt cccaatgaat aaatgtcagt
       61 tcgcccatct atttcctctt tattgaatgc aaaccattgt tcaggcgaac agtaaccagg
      121 cgtaccacct atctgtcctt ctgatgttac ggctgtaagc tctaatgatt tcttgtcaat
      181 tgcatcgcct tttactagtc cccagtctgc tactttaata ctcgatttag tatcgtcatt
      241 aaaaataatg ttatcaggtt taaggtccct atggtatacg cccgagctgt gtgcctgcgc
      301 caatgcactg cagataggaa gtataatctt gcttatcgcc caggtaggtt cgaagacaaa
      361 tttcctgtct gctttaaatt tctcatccat atattttcgt agggatcctc cttttaagta
      421 ttccataatg taatatggaa gaaatttggg ggggtcacca ccaatattcc agtaaagaat
      481 attaactata ttaggatgat tgagctctgg taatatctta atctctctct caaaacgctc
      541 tttactaaga ggatcgatcc gtgttagttc tttcaatacg catttagtcg tactagtagt
      601 aacaccatct tcctcatgct caaccatgac ttcatatatc gtaccaaatg atccagagct
      661 tatttgtttt atgatatcgt atttcaattc ttaaattgtt atgcagtgac taaattggtt
      721 aattctccta atagactaca aaaaatttta tcctttgaat tgaaaacatg tgtttcagtt
      781 ggtcgatttc aaaagtcagg acagttgtct ggatttgttc gtattagatg ggaggatcct
      841 aactctttcc taattttttc tctttctaga gttagactta ccaatatgtt cctagccttg
      901 aattcaatgt cgtttgctct cgtgttcctt taattcctgg ccacaatcat tgcgagaata
      961 gtacgcgtct atgcttgtgc tgctctcatc agattttgaa cccttgtcta ccgtatcact
     1021 catattgatt ttgtatatgt agcaaactat ataatcctat tcgtagccat cagattatta
     1081 caatcctgat atgaaaataa atatctctaa gagcaggata gatgttcagt actgccctcc
     1141 ttacttattg agttagctta aggctgtaga gacttataat ggttaaatag ttttctatat
     1201 attaagttaa gaatagagat gcttggaaca cttgtctaca taatactgat cataattgct
     1261 attattatta taatcgcctt actaaagttc ttgtttcaat tattcttttt gataccaatt
     1321 gaaatcgacc cgagtagcaa cgttctttat gctaagacaa tgctactgac ctagaagaga
     1381 ctatctggtc tcattgtaaa agttggacaa atgtggatgt taatatccga tatggacaca
     1441 cattatatag catcttgagc gagcctagct atgtctaatg agaagaaaaa gcaatagaag
     1501 caaccaagaa gattgccata gaagcgaaaa gaatcgaagt caaacttgat gcggctcaaa
     1561 ccctgcaaga gatcgaagga cgcccaactg ctcaaaagtt tcaacgaaat gtccaatctc
     1621 tagataaaat gaaggacgat gtaaagaaat ctatagacga ggctagaact caaattccaa
     1681 aatatactat gcaataaaga actatcagga gcaagtgcta cagtcctagc gagaaatggt
     1741 tatagattac atcgaagctc agaagtcact tattgattct gtttcaactt tgcagtttgg
     1801 ggaccgtact atgagaacca ttatagagtg tatagctatt ggttttcgcc ccgaatcccg
     1861 gcagatatat atgctagaat agtaggaaat attgcagaca gtatttcagc cgccagaata
     1921 agtaacgata ctacttttgg aaatattgat gcttttggga atgcattcga gagctcaaca
     1981 acatacaaaa gggcttgcaa gaataaatgt caataacgca aaaaccatcg caaatactgc
     2041 gagagaaact gtagaattca ctgcctcaaa caagcaaagg taaagttaga taagttaaga
     2101 aattttacag ctgaagatgc gagcaacttg gccaatttaa tatattaaca ttcattaatc
     2161 ttcttgaatt tccgcgtatg agtggccgtt acaattttat
//
LOCUS       DASPFX010000382         5164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1670940, whole genome shotgun sequence.
ACCESSION   DASPFX010000382 DASPFX010000000
VERSION     DASPFX010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5164
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1670940"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..1729
                     /locus_tag="VD694_08165"
     CDS             143..1729
                     /locus_tag="VD694_08165"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase II small subunit"
                     /protein_id="HXW12720.1"
                     /translation="MDFGTEISNALCFAISKGYQIHPDAFEMLKGLDIDILRIIQDII
                     KAKVTSKDNSIILVEDIKMVVDKHSKNGESQNQIQNSSYGKSSSSSSSSSLDLLHLRN
                     SDTSEPVSYRVLLDPTPIINSGEGVEGYTSLFRSRYEKSMHILSLRPDSRRITRVKTL
                     KKKKTDTGNHKPYMQYEQISGLSSTMVVAGLVMSRQFKRHGLEIVIDDFSGDLHAMGT
                     TEDIKKQGSVITTDQMVMLELENGGKSQNFVIKNIISPDIPDHLPNRAKSESYVVLIS
                     DLHVGSKYFMETAFMKFLNWISSTDDEIVRKIKFLCIGGDLIDGIGIFPNQDKELLEL
                     NINSQMSHVMDLLSRIPKHINVFVIPGNHDPGRRALPQPSIPRQSSEKLYTFQNFKML
                     GNPSLIELNGVKILMYHGQGLDDIIGTIPDLSYAKPAEAMKVLLRARHLSPIYGERTP
                     IAPEQEDHMVITEVPDIFHSGHIHVLDAQNYRGTLIVNSGTWQGQTNFQRTMGIIPNP
                     GVAVIVDLSTLQPFIMDFSQ"
     gene            complement(1719..2945)
                     /locus_tag="VD694_08170"
     CDS             complement(1719..2945)
                     /locus_tag="VD694_08170"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HXW12721.1"
                     /translation="MNDDSLDSIFDKAASGTSLVVKDRRTLTIDYVPDRLPFRDEESK
                     TIAHTLSIVLKGSRPSNLLLFGKPGTGKTAVVKNVLHRLSVKGEELGIELTVPFVNAK
                     SANTAYKVLHEIAEKMGINKGEKKLQVHFTGLSMGEATDRILEFIQRRKKLYVILVID
                     EIDSLVERNGDDILYNFTRANERISTESFISLIGISNSLTFKDKLDPRVRSSLSEEEL
                     VFNPYTVEQLQRILAERTMLAFNEDVVSSAAINLCAAMAGREHGDARKAIDLLRVAAE
                     IAEIERANKVEEKHIRLAQEKIEKDTNYEVLRNSTTHTKMIMLAVLKSRNGNTGEVYE
                     IYSDICRRIEQEPLTQRRITQIMSELDQLGLITSDVISQGRYGRSQKIRITVPHSTVK
                     EALKEDSILAGVLSID"
     gene            complement(3422..4060)
                     /locus_tag="VD694_08175"
     CDS             complement(3422..4060)
                     /locus_tag="VD694_08175"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HXW12722.1"
                     /translation="MFEGYDMHTLLLVVVSFFSGVAVILSYKAIKFFRHNNSSLKNAI
                     IDNRIKQYADKLHVYDKAIADLKVKVDMLEMSERSHLISRDIESKKEDSGRDIGMISQ
                     NGVIIEELRKKTAPASTQTHTYLDTLEQILLMLREKPMTTRQIQERVGRSREHTSRVM
                     KGLYNSGFVIRDTSSKPFKYSITDTGLRQLRDLHSDNDLSVTTRTEQNLEPV"
     gene            complement(4095..4469)
                     /locus_tag="VD694_08180"
     CDS             complement(4095..4469)
                     /locus_tag="VD694_08180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12723.1"
                     /translation="MASNEIEYNDIIRHIIANSLFTERQIYILYNKSSGRSPPNRISK
                     GAYYRQLKQSEQKVAGVLYSLIILRYLNMIDKGTFHTIEVILDNTSHLSESIKRDIVS
                     QNDSRNVISLVDEIIQKLIHQK"
     gene            4564..>5164
                     /locus_tag="VD694_08185"
     CDS             4564..>5164
                     /locus_tag="VD694_08185"
                     /EC_number="2.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerol geranylgeranyltransferase"
                     /protein_id="HXW12724.1"
                     /translation="MEHRVENYILDELKKYGTLCFPLIDSENSTNAVLIGNKAQSLGA
                     SAILIGGSSATDQIELAEMVFTIKSKINIPVILFPGNVTGVVPKADAILFSSLLNSEN
                     PYFITGAQALGALSVKKYNIESLPTGYLVIGEHTTAWFVGQARSIPLDKRGIAVMYAL
                     AAQYLGMRFLYLEAGSGAANSIPPDMIAAVRKQFTGILIV"
BASE COUNT         1624 a          943 c          860 g         1737 t
ORIGIN      
        1 caagatacag taaacgtctc ttgatggtga gatgcaattc agtgtatggg tatttgctcc
       61 tataattatt tgtagttatt attcattcgt ttgttacaga aatgtaatta aatatggcgc
      121 tttcatagtc aaggtggaca atttggattt cggaacagaa atatccaatg ccctatgttt
      181 tgcaattagt aaaggatatc agatacatcc tgacgctttt gaaatgctca aagggcttga
      241 tatagatatt ttgaggatca ttcaagacat tattaaagcc aaggtaacta gcaaagataa
      301 ttctataatt ctggtagaag acataaaaat ggtcgttgat aaacattcta aaaatggaga
      361 atctcaaaat caaattcaaa acagttctta tggtaagtct tcatcatctt catcatcatc
      421 atcattagat ttattacatc tacgcaatag tgatacatca gaaccagtat catacagagt
      481 actcttagat ccaactccca taattaatag tggagaagga gttgaagggt atacttcact
      541 atttagaagc agatatgaaa aatctatgca catcttgtcc ttacgtcctg atagtagacg
      601 aatcacaaga gtaaaaactc tgaagaaaaa gaagacagat actggaaatc ataaaccata
      661 catgcaatat gaacaaattt cgggattatc ctcaacaatg gttgtagctg gtttggttat
      721 gtcaagacaa ttcaagcgtc atggattaga aatagtgata gatgatttta gtggagattt
      781 acatgcgatg ggtacgactg aggatataaa aaaacaggga tcggtgatta ccacagatca
      841 aatggttatg ctagaattag agaacggtgg gaaaagccaa aatttcgtta taaaaaatat
      901 aatatcacct gatattccag atcatttacc aaacagagcc aaatctgaat cctatgtggt
      961 attaatctca gacttacatg taggaagtaa atatttcatg gaaaccgcat ttatgaaatt
     1021 tttgaattgg atatcatcaa ctgacgatga aattgtaagg aaaatcaaat ttctatgtat
     1081 tggtggtgat ttaatagatg gcatcggaat attccctaat caagacaaag aattacttga
     1141 attaaatatt aatagtcaga tgtcacatgt aatggactta ctctcacgta tacctaagca
     1201 cattaatgtt tttgttattc ctggaaacca tgatccgggt cgaagagcat tgccacaacc
     1261 ttctattcct aggcaaagct ctgaaaaact ttacacattt caaaatttca agatgcttgg
     1321 aaatcccagt ttgatcgaat tgaatggcgt aaagatacta atgtaccacg gacagggtct
     1381 agatgacatc ataggtacga tccctgatct aagttatgct aagcctgcag aagcaatgaa
     1441 agtattattg agagcaaggc atctttctcc tatttatgga gaacgtactc ctattgcccc
     1501 cgaacaagaa gaccacatgg taattactga agttccagac atatttcatt cagggcacat
     1561 acatgttcta gatgctcaaa attaccgtgg aacactaata gtaaattctg gaacttggca
     1621 aggacagaca aactttcaaa gaacgatggg catcatacct aatcctggag ttgcagttat
     1681 agttgatctg tctacacttc aaccattcat aatggacttt agtcaataga tagtacccct
     1741 gcgagaatag aatcctcttt caaggcttcc ttcacagttg aatgtggtac agtgatccta
     1801 attttttgag atctgccata tcttccctga cttattacat cactagttat tagtcctaat
     1861 tgatctaact cactcattat ttgggttatt cgacgttggg ttaatggttc ttgctcaata
     1921 cgtctacata tatctgagta tatttcatat acttccccag tgttaccgtt tcttgatttc
     1981 aatactgcta acattatcat tttagtatgt gttgttgaat ttctcaaaac ttcataattt
     2041 gtatcttttt caattttttc ttgtgctaac ctaatatgtt tttcttcaac tttatttgct
     2101 ctttctattt ctgcaatttc agctgctact cttaaaaggt caatcgcctt tctggcatct
     2161 ccatgctctc taccagccat agctgcacaa agattaatag ccgcacttga aactacgtct
     2221 tcattaaatg ctaacattgt tctttctgca aggattcttt gtagttgttc tacagtatac
     2281 ggattgaaca ccaactcttc ttcgctgaga ctactcctaa ctctaggatc aagtttatcc
     2341 ttaaatgtta gactattaga tattcctatt aggctgataa atgattcagt tgatattctc
     2401 tcgttagccc tagtaaaatt ataaagtata tcatccccat tcctttctac cagtgaatca
     2461 atttcatcta tgacaagaat cacataaagt tttttccttc tttgaataaa ttctaatatt
     2521 ctatcagtcg cctcacccat tgataagcct gtaaaatgca cctgtaattt tttttctcct
     2581 ttattgatac ccattttttc agcaatttca tgtaagacct tatatgctgt attagcactc
     2641 tttgcgttta caaatggcac cgttaattct attcctaatt cctcgccctt aacagaaagt
     2701 cgatgtaaga cattcttaac cacggcagtt tttcctgttc ccggtttccc aaaaagtaat
     2761 aaattagatg gtctggatcc tttcaaaaca atagataaag tatgtgcaat agtcttactt
     2821 tcttcatccc taaatggaag gcggtcgggc acatagtcta tagttaatgt tcttctatct
     2881 ttgacgacta acgacgtccc tgaagccgct ttatcaaata tactatcaag gctatcatca
     2941 ttcaaattta tttatcattc ccattaccat gtaaatatac cctcacccct gtttttcctt
     3001 tccaacataa gaaggatact aaaccaatag gtgttaacaa caagttaaca aacagtttta
     3061 aacaagagaa tcaattattg ttaattttta gcttaactat atatcaatag aaataataga
     3121 taatgagata tggactgcaa aagaaatcaa ggggtggggg ttaatacatt attcaactgc
     3181 atgttaactt tggtttacaa tcgtatttca ctaacctaaa acgtcttaaa atagacccct
     3241 ttatttccac tggagagtta atctggactg cattttgtga tttgttatta acaaacagcg
     3301 agataacaat tcagttctgg cttctcatag ttttttctta acatgttgca actagtaaag
     3361 catgttaatt atgatttaag gtaatgttaa caacattcac ggaatcaaat gccgaccagt
     3421 tttataccgg ttctagattc tgttcagtcc tagttgtgac actcaagtca ttatcactat
     3481 gcaaatcacg taattgtcgt aatcctgtgt cagtaatact atacttaaat ggcttagaac
     3541 ttgtatccct tatcacaaaa cctgaattgt ataatccttt cattacgcgt gatgtatgtt
     3601 cgcgtgacct tccgactcgc tcttgaattt gtctcgtcgt catcggtttc tctcttaaca
     3661 ttaacaatat ttgctctaaa gtatctaagt aagtatgtgt ttgtgtagat gcaggtgcag
     3721 ttttctttct taactcttct ataatcacac cattttgtga tatcatacca atatcacgtc
     3781 ctgagtcttc ctttttactt tcaatatcac gtgatattaa atgagatctt tctgacattt
     3841 ctaacatatc aaccttaact ttgagatctg caattgcttt atcatatacg tgcagtttgt
     3901 cagcatattg ttttattctg ttatcaataa ttgcattttt tagagaacta ttattatgcc
     3961 taaagaactt tatagccttg taagatagga ttactgcaac tccagaaaaa aaagaaacta
     4021 ctaccaacag tagggtatgc atgtcatagc cttcaaacat cacaactaga tgtgatatat
     4081 cattgatata actcttattt ttgatgaatc aatttctgta ttatttcatc gacaagtgat
     4141 atcacgttac gactatcatt ttgggatact atatcacgtt tgatgctctc actaaggtgt
     4201 gatgtgttat ctaatattac ttctattgta tgaaacgtcc ctttatcaat catatttagg
     4261 tatcttaaga taattagact ataaagaact ccagcgactt tttgttcaga ttgcttgagc
     4321 tgcctataat acgcaccttt acttattctg ttaggtgggc tccttccaga ggatttatta
     4381 taaagtatat aaatttggcg ttcagtgaat agagaatttg caataatatg tctgattata
     4441 tcattatatt ctatttcatt agaagccatt gtactataca aattggtata gctaaataat
     4501 attctttatg gatttgactt gatatcaaag caatgatata tagtgcctag aaatggttag
     4561 aatgtggaac acagggtcga gaattacata ttagacgagc taaagaagta tggcacactg
     4621 tgctttccac tcattgattc agaaaactct actaatgcgg tacttatagg aaataaggct
     4681 cagagtttag gtgcatctgc aatacttatc ggtggttcat cagcgacaga tcaaattgaa
     4741 ctagcagaaa tggtctttac tatcaagtct aaaatcaata tacctgtaat actatttccg
     4801 ggtaatgtaa ctggagttgt acctaaagct gacgcaatcc ttttcagctc tctacttaat
     4861 tcagagaatc cttattttat aactggggcg caggctttgg gggctttatc agttaaaaaa
     4921 tataacatcg agtcattacc tacgggttat cttgtcatcg gtgaacatac aacggcatgg
     4981 tttgttggtc aggctaggtc tatcccactt gataagagag gaattgcagt aatgtatgca
     5041 ttagctgcac agtacttagg gatgaggttt ctatacctag aggccggatc aggcgcggct
     5101 aacagtattc ctccagatat gatagcagca gtgcgaaaac aatttactgg cattttaatc
     5161 gtag
//
LOCUS       DASPFX010000383         3280 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_121372, whole genome shotgun sequence.
ACCESSION   DASPFX010000383 DASPFX010000000
VERSION     DASPFX010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121372"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            450..965
                     /locus_tag="VD694_08190"
     CDS             450..965
                     /locus_tag="VD694_08190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HXW12725.1"
                     /translation="MEKTSQLIKESRADINIELSKQARHGVIEILNRILCDENILYIK
                     TKNYHWNVVGPDFSERHAFFREQYEALDEIIDEVAERIRDLNGKSLGTYSEYIEHGRL
                     KESPGEHPNDVTMISNLLADHEQVIRTLRKDADRCDDEYHDMGTNDFLIGLMKKHEKT
                     AWMLRAHLDKG"
     gene            complement(1605..2645)
                     /locus_tag="VD694_08195"
     CDS             complement(1605..2645)
                     /locus_tag="VD694_08195"
                     /inference="COORDINATES: protein motif:HMM:NF037406.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12726.1"
                     /translation="MKDDGQVKIKLREINEIVGEYLDRINNSIQQPKTFDELIEGLNG
                     LIGPSTMTRNLQQSISFFFTFFVQPKYRGNKEAFSFSEDALDRLRHLVLQLDSLLSAR
                     FSESESSGGSGSVTVLEQMSQDLGDLKKTIEDLEAQTQGFTDRTSRYGANYPVDFIIL
                     SAHNTRKLAKRLEIDYKHLASLPKYNSKKNKDDIDDTTKLLRNLFSKFHHVVIALRNR
                     HSKRTPFKINDEYDVQDLLYSLLLLHFDDIRTEEWTPGYAGGTARMDFLLKKEKLVIE
                     CKKPRKGLGTKEVGDQLIMDMARYRNHAECKILVCFVYDPGSIITNPKGLQDDIEAKS
                     TSDFQIVVVIKP"
     gene            complement(2802..3032)
                     /locus_tag="VD694_08200"
     CDS             complement(2802..3032)
                     /locus_tag="VD694_08200"
                     /inference="COORDINATES: protein motif:HMM:NF014177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0032775 - DNA methylation on adenine
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HXW12727.1"
                     /translation="MILNIGVKLRCNFTRYTDMGFTHNDQKDIANIFEELTKRKCNVM
                     LRNSNTLLIKEVYSKLARDVREVNAIRVIYSL"
BASE COUNT          997 a          617 c          582 g         1084 t
ORIGIN      
        1 ttttgttctg aagactttat agaaagagta cccctatgcg cataactgat atgatcacca
       61 agttcagact gattgcgtgc tgctaatcca caaaacctac acgtagctga cctttctctc
      121 aacacttttt ctctccttca atgcatcgtc tcaccatatc gttatctttc aagtcctcta
      181 attcttgtcc agatgcatta tcttggtctt ttcctttttt tgtttctaga ggattgatgg
      241 tcaaacagat aggtacatcc gcaagagtaa ttgagcgtca cagtactggg attcttcctc
      301 ttttcttgtg ttgcgccata tttactacaa agtaataatt tacatcatag tatttttaca
      361 tttaacaaat gtcttgccat tcatatgctg cgtgtttttc ctttcgacca cctttttatg
      421 tgatgttacg caagcttaat ttgataaata tggagaaaac aagtcagctt ataaaagaaa
      481 gtagggccga tataaacata gagctatcaa aacaggcccg acatggtgtc atagagattc
      541 tcaaccgcat actatgtgat gaaaatatcc tctacatcaa gactaaaaat tatcattgga
      601 atgttgttgg acctgatttt agtgaaagac acgcattttt tagagaacaa tatgaggcac
      661 ttgatgaaat tatagatgag gttgcagaaa gaattcgtga tttgaatggg aaatcattag
      721 gtacatattc tgagtatata gaacatggta gattaaaaga gtcacctgga gaacacccta
      781 atgatgtaac aatgatttca aatctcttag ccgaccatga acaagtaata aggacgctac
      841 gtaaggatgc tgacaggtgt gatgatgaat atcacgatat gggtacaaac gacttcttga
      901 ttggacttat gaaaaagcat gaaaaaacgg cctggatgtt aagagctcat ttagataaag
      961 ggtaatttct taataccaaa cctttttttt gttaatcttg ttattaatga ataaatacga
     1021 agtctatttt tgagtcggta agccgaaata agattttatg cgtatgcatt aagcaactag
     1081 ccaagtttta cggtacttta tacaaggtgt atgaaggcta ggatatattc atcaatggac
     1141 tctttgacat tgcttttttc tgcataaggc cgcctagaat ttttaacgaa ctggttacca
     1201 ccaccatgtt ctcttcttct tgataaatct agaagctaag catgattttt attacgttct
     1261 aattaccaca atcagcgaat attgttattt agtaggccgc aagttctttt tagtttggtg
     1321 ttcatctcca tcgttttttc cttaagcttg gatagctcaa atagcaagtt attgtttgaa
     1381 cacacaaatg ctcaaatatc tatgaatagt acagtacagg aagtggatca caccaaaaaa
     1441 ggataactaa caccaggaat ctggagaaga ggtagttgca gggagtggtc agatcggtta
     1501 gtgtaaaaca ttaccctcac gtgaaataga tagatgacag cacaatttga caattcttgg
     1561 aaaataatga tgaacaaata ataatgttac acctgacatg gcctctacgg cttaataaca
     1621 actacaattt ggaaatcaga ggttgatttg gcttcaatgt catcctgtaa acctttagga
     1681 ttagttataa tgctaccagg gtcataaacg aagcacacta aaatcttaca ttctgcatga
     1741 tttctatacc tagccatatc cattatgagt tggtctccga cctccttcgt ccccagcccc
     1801 ttcctaggct tcttacattc aataacaagt ttctcttttt ttagcagaaa gtccatcctt
     1861 gcagtgccgc cggcatagcc gggtgtccac tcttcggtgc ggatatcgtc aaaatgtagc
     1921 aacaatagag aatatagcaa atcctgtacg tcatattcat cgtttatttt aaatggtgtt
     1981 cttttactat gtctattacg taacgctatt accacatgat gaaattttga aaatagattt
     2041 cttagcaact tagtggtatc gtcaatgtca tccttgtttt tcttcgaatt gtattttggg
     2101 aggctagcta aatgcttata atctatctct aacctttttg ccagtttcct tgtgttgtgg
     2161 gcgctaagga taatgaagtc aacaggataa tttgccccgt acctgctggt cctatctgta
     2221 aaaccttgag tttgtgcttc caggtcctct atagttttct tcaggtctcc caaatcttgg
     2281 gacatttgtt ccaaaaccgt cacggaaccg gaaccaccac ttgattccga ctcagaaaac
     2341 ctggcagaga gtaaagaatc caactgaagt acaaggtgtc gtaatctatc aagtgcatct
     2401 tctgagaagc taaatgcttc cttattacct ctatattttg gctgcacgaa aaaagtaaag
     2461 aaaaaactga tagactgctg taggtttcta gtcatggtcg aagggccaat caggccattc
     2521 agcccttcaa ttagttcatc gaaggttttt ggctgctgta tagaattatt gattcgatca
     2581 agatactccc caacaatctc attaatttcc cttagcttta ttttgacctg tccgtcatcc
     2641 ttcatcaccg cttatgtttt gtattaatta tttgaacttt acagactgat acagagtata
     2701 gacatttgct aaactaccag ttttagttcg tggttcagaa accattatct tttatgaata
     2761 gttgcgtatg attaattgta tgacctattc ttcctgatcc tttacaagga atatattact
     2821 ctgattgcat ttacttctct tacatctcta gcaagtttag aatacacttc ctttattaga
     2881 agagtatttg aattccttaa cataacattg cattttcttt ttgttagctc ctcaaaaata
     2941 ttagcaatat ctttctgatc gttgtgggta aaccccatat cagtatacct tgtaaaattg
     3001 cagcgtaact tgacgcctat attgaggatc aagataaata gaatctcctt cctttgcatt
     3061 tttcaaaaga attcgttttt tggtctaata atatctctta actggtagta atactcagat
     3121 ggtaatttgg atattcgatt tcatgtactg gcggtgacct gacaaataat atgaaaagag
     3181 ctgaaccaat gtatgaacat taacagtgcc aaaatccctg aggaaataaa tgtacataaa
     3241 caaatctggg gcaaaaatgt agaagagatt atctatggta
//
LOCUS       DASPFX010000384         3154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1388113, whole genome shotgun sequence.
ACCESSION   DASPFX010000384 DASPFX010000000
VERSION     DASPFX010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1388113"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VD694_08205"
     CDS             <1..230
                     /locus_tag="VD694_08205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12728.1"
                     /translation="PGQFIKAEENIRQSMQRFVDIQRKSESKIWSYQMDLKNDNQSVS
                     RTPALEVYIVIHPLTPKDIPEDKDLIDDKAT"
     gene            569..772
                     /locus_tag="VD694_08210"
     CDS             569..772
                     /locus_tag="VD694_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12729.1"
                     /translation="MSLASNNVHVLVAGGGYAGIQTALGLEQLLKKKNDPMIQLVDKN
                     IYHTLLPSLPEIISKRGFSIIYY"
     gene            803..1729
                     /locus_tag="VD694_08215"
     CDS             803..1729
                     /locus_tag="VD694_08215"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HXW12730.1"
                     /translation="MQTNIVDIDLDKKLVYTVNPSYRLEFDFLVLSLGSRPFLPNIPG
                     LREYSFQFNSVENAKRIAEKLSSKDMIDPVENTNIIIGGGGATGVEVAGEIASLIKKR
                     NRLASNIKVILISPDLLVSFPARTKNWVRAYLEALDVDLLLGDEYYITEVKPDLVCLK
                     NGRAIKTTMLIWAGGVTALPLPQQIGLKTGYNGRVVVNKFLQAEGRKNVFVLGDAALI
                     INNKGYPVPTTAYFAEQHGKIAAQNIYSMIKEQGRTMKEYNVKNLWLDDFAISIGSDL
                     AVSRIRGLDLYGYSASKVKKLIKMKYLKDIKK"
     gene            2070..2489
                     /locus_tag="VD694_08220"
     CDS             2070..2489
                     /locus_tag="VD694_08220"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HXW12731.1"
                     /translation="MQILTRTIFLRSKGEADIIDITPETSKILSQSKLKDGIVTIFVP
                     GSTAAVTTIEYEPGLRQDFPNMLSRIVPENIEYQHENMWHDGNGHSHVKASLIGPSLT
                     IPFNDGTLMLGTWQQIVVLEMDINKRERNVILQIMGE"
     gene            complement(2930..>3154)
                     /locus_tag="VD694_08225"
     CDS             complement(2930..>3154)
                     /locus_tag="VD694_08225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12732.1"
                     /translation="IPPIEINIILNSGTSAATPKRTSPPVIATMPVIITRIAIIVTAG
                     GRGLKEFLSVLNHCWSIFDNLTVLDKLVLL"
BASE COUNT         1117 a          493 c          557 g          987 t
ORIGIN      
        1 aaccaggaca gttcattaag gctgaagaaa atatacgtca aagtatgcaa agattcgttg
       61 atatacaaag aaaatcagaa tccaaaatat ggagctatca aatggatctc aagaatgata
      121 atcaatcagt ttcacgaact cctgcacttg aagtttatat tgtgattcat cctctgacac
      181 caaaagacat tccggaggat aaagatctaa tagatgataa agcgacataa tatttcacga
      241 taggactaca tatgatgagt aagttgcata tgcatttaca gagtttgtag aactggctgg
      301 tgagttagcc aagctggacg agatattatc tcctttctaa actaaccatt tatcgatttg
      361 atgttgaagc ataggagtga atcaaaccta tacaaccccc ttttagaggt catcttcagt
      421 aggactaaaa gctcttaaca gattaaggtt aaccttatat gtaaaagccg tattagtaat
      481 ccccagaaac tgtgggatgg cagtaattga ttatattaac caaaagtgat attataagag
      541 aaaatatatt atttgacatc attaattaat gtcgttagca agtaacaatg tacatgtttt
      601 agttgctggt ggtggatatg ctggtattca aactgccctg gggttggaac aactacttaa
      661 aaaaaagaat gatccaatga ttcagttagt tgataaaaac atatatcata cattactacc
      721 aagtctgcca gaaatcatat ctaaacgtgg attctcaatt atttattatt aagatattat
      781 ccggtgtaag aaaattgatt ttattcaaac taatatcgtt gatatcgatc tagataaaaa
      841 attggtttat actgttaatc cttcatatcg actagaattc gatttcttag ttctatcatt
      901 gggtagcaga ccattcttgc ctaatatccc tggacttaga gaatattcgt ttcaattcaa
      961 tagtgtagaa aatgcaaaaa ggattgccga aaaactgtca tcaaaagata tgattgatcc
     1021 agtagaaaat acaaacataa tcatcggagg tgggggagcg actggagttg aagttgctgg
     1081 tgaaattgca tcattaatta aaaagaggaa tcgactagct agtaacatta aagttatact
     1141 aatatcacca gatttattag ttagttttcc tgctcgtacc aaaaattggg tacgagcata
     1201 tcttgaggcc ttagatgttg atttattact aggcgacgag tactatatca cggaagtcaa
     1261 accagatctg gtatgcctaa agaatggtag ggctataaaa actacaatgc taatttgggc
     1321 aggaggcgtc actgctctac ctcttcctca acaaattgga ctcaaaacag gttacaacgg
     1381 aagagtagta gtcaataaat ttctgcaagc agagggacga aagaatgtct ttgtattagg
     1441 tgatgctgcg cttataatta acaataaagg atatccagta ccgacaacag catattttgc
     1501 agaacaacat ggaaaaattg ctgcacaaaa tatttattct atgataaaag aacaagggcg
     1561 taccatgaaa gagtacaatg ttaaaaacct ttggctagat gatttcgcaa tttcaatagg
     1621 atccgatttg gcagtttcaa ggataagagg actagatcta tatgggtatt ctgcaagtaa
     1681 agtaaagaaa ctgatcaaaa tgaaatatct aaaagatatt aaaaagtaag gatactagac
     1741 tcctaactag atcaaattaa gatgaaagca tgaaaacctc tcttaacttt ccactttctg
     1801 tctgaattaa tctgttaatc cgattaattc gtaatttcta ataatataat cccaatcctt
     1861 atagttaatt tattatagat gcaaataatt atgatgttta tgatgttgaa taactatcta
     1921 aaattttagt tcgaactaga atccctaatt ggaatctaat ttaccgattc aatatgaaat
     1981 atttcatttt tattttaata catatactga aattacctct ataatctgat gataaagatt
     2041 attactgaaa ttatgtatga aatagataga tgcaaatatt aactagaact atttttttaa
     2101 gatccaaagg tgaagcagat ataattgata tcactccaga aacttctaag atacttagtc
     2161 agtcaaaact taaagatggc atcgttacta tttttgtacc gggttcaact gctgctgtaa
     2221 caacaataga atatgaacca ggattaagac aagattttcc taatatgctg tctagaatag
     2281 tgcctgaaaa cattgaatat cagcatgaaa atatgtggca tgacggtaat ggacactctc
     2341 atgtaaaagc atctttgatt ggtccaagtc tgactattcc attcaatgac ggtactttaa
     2401 tgttgggaac ttggcaacag atagtcgttt tggagatgga tattaacaaa agagaacgaa
     2461 atgtgatact tcagataatg ggggaataat gtcttttcaa aaaaactatc aggataaaat
     2521 agtatatcta taaactttaa aatcacgatg gctaatgtac cgattacagt aattaaagct
     2581 ctttctaaat gttgttcgaa ataactcgtc tttataacat ctaatagtct aattttgggg
     2641 ggttgtagtc tggttttctt aatcaagtaa ttaggaattg atttaggaaa gtagacagtc
     2701 tggcgcctgc cagcaatata atcaatgaat gaaacaatat ttttatgctg ttatataaat
     2761 tgctagtatg atgtttgata caatacttgc gagatgagta cattccgcac ataatacaca
     2821 cccctatagg tttgccgcac aacgtgtaaa catccctgta aatagatgca gtgtttcacc
     2881 gtgaaactca cttctattca gatgcaatat atgttaactt attttactac tacaataaaa
     2941 ctaatttatc taacacggtt aaattatcaa atattgacca acaatgattt aatacggaaa
     3001 gaaattcttt tagccctcgg ccccctgctg ttacaataat agcaattctg gttattatca
     3061 ctggcatagt tgctatcacc ggcggacttg ttcttttggg cgttgcggcg cttgttcctg
     3121 aattaagtat aatatttatt tcgataggtg gtat
//
LOCUS       DASPFX010000385         2792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_951568, whole genome shotgun sequence.
ACCESSION   DASPFX010000385 DASPFX010000000
VERSION     DASPFX010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_951568"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..351
                     /locus_tag="VD694_08230"
     CDS             43..351
                     /locus_tag="VD694_08230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12733.1"
                     /translation="MAKKYDAEQFALTIINTRPWFYSSTLYGWASSETMEKVHENDIH
                     RAQTWLDQVKENASDNEVRLQTKISLVPYTETSTAGAITNYVCQEIQSRAYSLASRIG
                     "
     gene            1196..1690
                     /locus_tag="VD694_08235"
     CDS             1196..1690
                     /locus_tag="VD694_08235"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12734.1"
                     /translation="MYNNILVPYDGSQPSHLAVQHAFNFTKIDTLPVTTKKVHLLYVI
                     QEIRVPPELYSYPLHELDKLTTKYIKQLYQDLDTKATNMLKAKSLEFKGGRKIAISTH
                     VLLGDPADKIIEFADSENIDLIIMGNVGLRGSTKIKTLGSVSRRVSEMARCPVLLVHQ
                     MNLS"
     gene            complement(2453..>2792)
                     /locus_tag="VD694_08240"
     CDS             complement(2453..>2792)
                     /locus_tag="VD694_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12735.1"
                     /translation="LNYESYDNEHKRKGIVEEKGSKIPCIVNDRKIMEFLLSHNRRAK
                     SNPIFSAVSDLDTIQTRAMKSDISIMEAAQYLMDIKNQFLVLEGNEYIVTPWDLIMKT
                     AGNGDERDNQ"
BASE COUNT          880 a          521 c          491 g          900 t
ORIGIN      
        1 taccagacat gctaaactag attactgaag tatgcactgg taatggcaaa aaaatatgat
       61 gctgagcaat ttgctttaac tataattaac acacgaccgt ggttctattc atctactctg
      121 tatggttggg cgtcttcgga aaccatggaa aaggtacatg aaaacgatat acatagggca
      181 caaacatggt tagatcaagt caaggaaaat gcaagtgaca acgaagtaag attacaaaca
      241 aaaatatctt tggttccata cacagaaaca tcaacagctg gtgctataac gaattatgtg
      301 tgccaagaaa tccaaagcag agcgtattct ttggcatcaa gaattggctg ataacaattc
      361 ctattattct cgcgataacg tcattgctgc tctttgcgta cgttctacag gtcaacgcat
      421 gggattaaag tcttgcgatt gcgaagggca gaacaatggt ttttggtgta atagttttct
      481 ttgagttatt ctttgcattg tcttgcagat ctttgctcac aacattaatg aacttagatt
      541 atttggaaac aaaatgctaa tgtattcatt tttatcatga actatccacc catacaagaa
      601 ttatttgatt ttgtcccact gcagctagga gaccggattc ttttgttgct gctagcaaca
      661 atggggtttg tatattcaga aacaataaaa ctactgacca gaaagaagat atttagatga
      721 tataatctaa atcattttgt ctaaaagttc cgttgttagt ttgtcgctgc ttttgactct
      781 aaactcctgc cgtaagataa tatctagcct gtcttaaatg atgataggca gtacggcgga
      841 acatgacaac agtttaaaga caagcagtac attttatttt acatacgaaa tcaggattta
      901 gattgaacct tggagatgta ttactttaat ggcaaactat cgtatttttg ttatgactat
      961 ggatttaatt atggaaagtt taggaagcaa ggtccaacca gacctccata aatatttatc
     1021 caacaggtag aattaaaagt cgcattctag aaatatgaat aagcactaaa agtaaacaac
     1081 actgtctcag attcttatat aggaattaac ttaaaggtcc tgcttatatt aggatctaat
     1141 atgtgtaata ataatacttt actctgttta aatagttccc aggatgataa tccttgtgta
     1201 taacaacata ctagtaccct atgacggatc tcagccctct catctcgcag tacagcacgc
     1261 atttaacttc acaaagattg atactctgcc agttacaaca aaaaaagtcc atcttcttta
     1321 cgtaattcaa gaaatccgtg tccctcctga actatattcg taccctcttc atgagctcga
     1381 taagttaact acgaagtaca taaaacaact atatcaagat cttgatacca aagcaacgaa
     1441 catgctcaag gctaagagtc tggagtttaa agggggaaga aagattgcta ttagtacaca
     1501 tgtcctttta ggggatccag ctgataaaat aatagaattt gctgatagtg agaatataga
     1561 tttgattatc atgggaaatg taggattaag gggtagtact aaaatcaaaa ctcttggcag
     1621 cgtatctcgc cgggtaagtg agatggctag atgcccagta ttgctagttc atcaaatgaa
     1681 tctatcttaa agaatgcttc tttatttggc gcggaaacca tgtgcctaaa ccgaattgga
     1741 aagaggtaat ggaaatgaag acactaacac tatattattt caacctcagg agctagtatt
     1801 atcaatgctg tcttaactta tcttattcgg ttaaccaatt cctccaaagt ccatctccaa
     1861 taggtggcac ggttgcaaaa ttggtcgagc attatcaaag tgaggaagac tttatgccat
     1921 aaatggtatc ccgctactcg agataaactg cacacctaca ctaacctcac gtaccctttt
     1981 cttgttctct aagaaatttt aatagctctt taatagtaat cggataactg cgtcctttgt
     2041 gtctggatgg aggtccttta tagcgttctc tataactttt ctatagccct ttccgagatc
     2101 ctttggtcta aacacagcgc ccatatcatt ttgaggtgat tgttaattat aaagataatg
     2161 ggtacggaaa tggtgggaat gtatttaatg gttggttaaa tctatgagtt ggttgttact
     2221 actcactaat atcgattttg tgctgcgtcc ttcataaaac taggagtaaa gaattatctc
     2281 ctcctttcaa atcgctcttt cacaagcgaa acaagtcact ttttataatt aggctcttat
     2341 aattcatcac ttcctatttt atgcgaaata catgtccaag tatatccaag tacgaggtaa
     2401 cagctttttt agcttattat ggcgttgtgc aatttctgtt ggtaatgcgg aattattgat
     2461 tatctctttc atcaccattt cctgcagttt tcataatcaa atcccacgga gtgactatat
     2521 actcatttcc ctccaaaacc aagaattgat tcttaatatc cataagatat tgagctgctt
     2581 ccattataga tatatcactc ttcatagcac gcgtttgaat cgtgtcaagg tcacttacag
     2641 cactaaaaat tgggttagac tttgctctcc tattgtgact tagcaagaac tccattattt
     2701 tcctatcgtt tacaatacaa ggtatctttg aacccttttc ctccacgatt ccttttcttt
     2761 tatgttcatt atcataactt tcatagttta gt
//
LOCUS       DASPFX010000386         2935 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1959847, whole genome shotgun sequence.
ACCESSION   DASPFX010000386 DASPFX010000000
VERSION     DASPFX010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2935
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1959847"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(436..780)
                     /locus_tag="VD694_08245"
     CDS             complement(436..780)
                     /locus_tag="VD694_08245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12736.1"
                     /translation="MIAKVISGSIVDSSLSFFGGGETGNFDKKKYAVLTLSIRQTVLE
                     RSHYRCQKCSVKLRGSNGPFFEHINGSLKDNRPSNLRSLCDKCFEHVKAKESRKGRLG
                     SIRNNLGQVFGK"
     gene            complement(930..1229)
                     /locus_tag="VD694_08250"
     CDS             complement(930..1229)
                     /locus_tag="VD694_08250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12737.1"
                     /translation="MKNVSMTVILISALTLTLVSTAIFTGIPQVRAEDDENKEDEKDQ
                     VNTERQQINKCENNSQNGESDLECNNIVVYGVVCMPGAQCILDKYEVPFELVTPF"
     gene            complement(1396..1499)
                     /locus_tag="VD694_08255"
     tRNA            complement(join(1396..1432,1463..1499))
                     /locus_tag="VD694_08255"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1463..1465),aa:Ala,seq:tgc)
     gene            1904..>2935
                     /locus_tag="VD694_08260"
     CDS             1904..>2935
                     /locus_tag="VD694_08260"
                     /inference="COORDINATES: protein motif:HMM:NF012267.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HXW12738.1"
                     /translation="MGPGPHFPHIFWIMSIIAQMIEILLAHVQIIWDMSALLKDRVWV
                     MLSEVAKRGVYPLHGSRLGIFRIPVEITERSDTSAIINSLKSSGFKLDSYADRIYVTD
                     RWTETGVDAITQKDVEANLEITVEIVTGDVVDIIYQIKPVEYFGDHYWIKNYRQKTDN
                     RAKIIIDTIIWNSKIGDKLIDYYKKSQKLSAEDSIKKLDELTPLKMKPVSRDPSLAQD
                     ARSQENLSQPKAQTDTPSMTPPPQAPPAMAGGNTTISLTGTGDSYSKVEGPIDPEFKS
                     KRQVTGTFQGIKVWGPVDAPGQLGIWGTEVTVDFDICVADGACIEACPVNVYEWLDTP
                     GHPASEKKPF"
BASE COUNT          972 a          546 c          503 g          914 t
ORIGIN      
        1 aaaaaactct cgaaaagata tcctaatttt gctttttctg gtatctgcga atgatacaac
       61 ccatttttcg taaggtatgg tattatcctc atctacgctt gaaacaattt tccctttctt
      121 ttttgccata ttttctcaat caatatcaga atattgcata cttcagaata tatttttaat
      181 ccaacgcaac tattcacttt tgttagaaca tctaaatcaa aatttttatg catcagcatt
      241 ttgagaagtt tatatgaacc gctattcaat gatccataat tggataagac atgcgcttac
      301 tgcggtaaaa tttttagtgg agaaagttgg cctcacgtgg aaggaaactc taatgtcggt
      361 gtcctgaaga tagaaaattt ctgctgtgag gagcatagaa ttttattttt ggaatctatt
      421 tagaaaatta ttggtttatt ttccaaatac ttgaccaagg ttgttcctga tacttcctaa
      481 gcggcccttt ctactttctt tcgctttaac atgttcaaaa cacttatcac ataaagacct
      541 caaatttgaa ggtctattgt cttttaatga accattaatg tgttcaaaaa aaggaccatt
      601 acttcctcta agtttaacag aacatttttg acatctatag tgtgaccttt ccaacacagt
      661 ctgtcgtata ctgagggtca ataccgcata ctttttctta tcaaaatttc cagtttctcc
      721 accgccaaaa aatgacaatg atgaatctac tatagagcca gaaataactt ttgctatcaa
      781 attttcaaag aatatttaaa gagaagaaca aaatctgact taaaataatt acgtgagtat
      841 cagataaaat atgcctgatc gcaataacaa agtaaagtat attttcctac aacagaattt
      901 taatacttta gaaaaaaatt atgaaccctt tagaaggggg tgaccaattc aaatggcact
      961 tcatatttgt caagtataca ttgcgctccg ggcatacata ccaccccgta gacaacaata
     1021 ttattacact ctaagtcact ttctccgttt tgtgaattat tttcacattt gttgatttgt
     1081 tgtctttcag tattcacttg atccttctca tcttctttat tttcatcatc ttctgctcta
     1141 acttgcggaa ttccagtgaa tattgctgtt gacaccaatg ttagggtaag cgccgatatc
     1201 agaataacgg tcatactaac gtttttcatt acaacaattt tttatctatg atatattaga
     1261 agtgcgttac aacaattagt aaaaaaagat gaggatcttg ttgctaaagt agaatgtgtt
     1321 aatttctcct ataacaaggt ttcaaagata gttaatcaaa cattttgata aggatcaaat
     1381 ctttgggatt caaagtggac cgagtgggat ttgaacccac gaccacctac gtttcccctg
     1441 taaatggcaa agtcatttac atgcaaggca ggtattctac cagactaaac tatcggccct
     1501 ataaacacag tattttttta cttgattatt taagtgcttt taattagtcc ccatattgga
     1561 ttatttttga tatattaaaa tacacaaact cacaagcgca tagatacgaa gtggatggtg
     1621 tggaattata tgttattgta tacagtaaca ttgttaatat gatttcatat tcccgttgat
     1681 atctgtaatt acttaattaa atagtcttaa cttgcaagaa aaaatgacat taccaatttg
     1741 ctagaattga tatgaccaat aagttgtaga atttacaaac tagcctattc atagatgtcg
     1801 tcagtactct gatatttatt gaaacaaatt cctttatcga tgactttagg aatgaattat
     1861 agtccaaatc ttgatgcgta aatgtggaga atcagactaa gccttgggtc caggacctca
     1921 tttcccacac atattctgga ttatgtcaat cattgcacaa atgatcgaaa tacttttagc
     1981 acatgtccaa ataatttggg atatgtccgc tctgttaaaa gatcgtgttt gggttatgct
     2041 atcagaagtg gccaagagag gggtttatcc cttacatgga tccagattag gaatattcag
     2101 aatacctgta gaaataacag agcgttctga taccagcgcc attattaaca gtttgaagag
     2161 ttcaggcttt aagttagatt cgtatgcaga tcgaatctat gttacagata gatggacaga
     2221 aactggcgtt gacgccataa cccaaaaaga tgtcgaagca aatctagaaa tcacagttga
     2281 aattgtcaca ggggatgttg tcgatataat atatcaaatc aaacccgtag aatactttgg
     2341 cgaccactac tggattaaga actatagaca aaaaacagac aacagagcaa aaataattat
     2401 tgacaccata atttggaact ctaagattgg tgataagcta atagattatt acaaaaaatc
     2461 acaaaaactg tcagctgagg actctataaa aaaattggac gaactgacgc cactaaaaat
     2521 gaaaccagtg tccagagatc cttcgcttgc tcaggatgca aggtcccaag aaaacttgtc
     2581 acaacctaag gcccagacag acactccatc catgacgcct cctccacaag ctcctccagc
     2641 aatggctggc ggtaacacaa cgatttcact tactggaaca ggagattcat actcaaaagt
     2701 agaaggtcca atcgatcctg aattcaaatc aaaacgccag gtgacaggaa cattccaagg
     2761 aattaaggtt tggggtccag tcgacgcacc agggcaacta ggcatatggg gaacagaagt
     2821 tacagtggat tttgatattt gtgtcgctga tggtgcatgt attgaggcct gtcccgtaaa
     2881 tgtctatgaa tggctagata ccccaggaca tcctgcatcg gagaaaaagc ccttc
//
LOCUS       DASPFX010000387         2291 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2106764, whole genome shotgun sequence.
ACCESSION   DASPFX010000387 DASPFX010000000
VERSION     DASPFX010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2106764"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..1499)
                     /locus_tag="VD694_08265"
     CDS             complement(72..1499)
                     /locus_tag="VD694_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HXW12739.1"
                     /translation="MVKRLFGTNGIRGVFGQDLSIEFLIDIAFSIGYYFGKGPIVLGS
                     DGRSSSLSISKIVSAVLMSMGIDVYQMGLTPTPCLQFTVKNSKMSGGIMITASHNPKE
                     YNGLKPVSHLGFELSRDEEIKIESIYNQRSFLDKKYKAIGNLFDLNAFDQYINKVLTF
                     VDREVIEKSKIRIVMDCGNGVQSVIAPLIARKLGCEVLIMNGNIDPNFSARGSEPKME
                     NLLSLTKMVSENGYDLGVAYDGDGDRSIFCDEKGVIRWGDKTGSLLAYHLIKNKKLDT
                     EIVCPINSSSVISRVGDLLDKRVHFTKVGSVEVTYGMKDTNSLIGFEENGGFFYGPLN
                     LVRDGAITTALVIEMLSYYKQGFLADQVHDIDSPIKTQTLSSIYSILGETFQYKSSIN
                     LSSKDDIQRVLEACSKHGSVFKVEKVDGVKIWFDSESWIMFRPSGTEPLIRIYSESND
                     NSLMNSKVKEYLNLIKKLLNIEINI"
     gene            1661..1782
                     /locus_tag="VD694_08270"
     tRNA            join(1661..1698,1738..1782)
                     /locus_tag="VD694_08270"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1696..1698,aa:Tyr,seq:gta)
     gene            1992..2180
                     /locus_tag="VD694_08275"
     CDS             1992..2180
                     /locus_tag="VD694_08275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12740.1"
                     /translation="MTNKIKSLTIINLSQSAIFVILCVVGTAMNVKLIFVKTILFNIR
                     KEGRVRKLYSDGHSLIFI"
BASE COUNT          724 a          438 c          362 g          767 t
ORIGIN      
        1 catattttat aatcacccaa tgggatcatt tccactcttt tttatgataa aaaagagtat
       61 taaaaatgtt attatatgtt aatttctatg ttcaaaagtt tctttattaa attcaaatac
      121 tcttttactt tcgaattcat caagctgttg tcatttgatt cagaataaat tcgaattagt
      181 ggttctgtac cgctaggtct aaacattatc caagactcag aatcaaacca tatttttact
      241 ccatccactt tttcgacttt aaatactgat ccatgcttag aacaagcctc taatactctc
      301 tggatgtcgt ccttactgga taagtttata ctagatttat attgaaacgt ttctcccaat
      361 atcgaataga tacttgaaag tgtctgtgtt tttattggtg aatcaatatc gtgaacttgg
      421 tccgccaaaa atccttgctt gtaatagctt agcatctcta taactaatgc cgttgtaatt
      481 gctccatcac gaacaagatt tagaggacca tagaaaaaac caccgttttc ttcaaagccg
      541 attagagaat tggtatcttt catgccatat gtcacttcaa cacttccaac ttttgtaaaa
      601 tgcactcgct tatcaagcaa atctccgacc cttgagatca ccgaagagga attaatggga
      661 cagacaatct ctgtatcaag ctttttattc tttattaaat gataagctag tagtgatcca
      721 gtcttatctc cccaacggat tactcctttt tcatcacaga agatactcct atcgccatct
      781 ccgtcgtatg ctacacctag atcgtaacca ttttcgctca ccatctttgt aaggctaagc
      841 aggttttcca ttttaggctc ggatcccctt gctgaaaaat ttgggtctat gttaccattc
      901 atgataagaa cctcacagcc caattttcgg gctattaatg gagctataac cgattgcaca
      961 ccattaccac aatccataac tattcttatt ttagattttt ctataacctc tctatcaaca
     1021 aatgtcaata ctttattgat atattggtca aacgcattca aatcaaatag gttgccaata
     1081 gctttatact ttttgtctag gaaggacctc tgattgtata ttgactcaat tttgatctcc
     1141 tcatctcttg ataattcgaa cccaagatga gagactggtt tcaatccgtt atattcttta
     1201 ggattgtgtg atgcggtaat cataattcca ccagacattt ttgagttctt gacggtaaat
     1261 tggagacacg gggtgggtgt caaacccatt tggtaaacat ctatgcccat ggacattaat
     1321 acagcagata caatttttga aatcgacagg ctagaagaac ggccatctga acctaatact
     1381 attggtcctt ttccaaaata atatccgatt gaaaatgcta tatcgattag aaactcgata
     1441 gacaggtctt gaccaaagac tcctctaatc ccatttgttc caaatagcct cttaaccatc
     1501 aatcatctac ctacatgaat aattatataa tgattctcat ccaaccagta aataggaagt
     1561 caatttactc tttaacagat accaattatc gaatcccaat tcttgttaaa aatttgtagt
     1621 gacaatagat aaatttggct ttaaacatcc ataaagtaat gcgggggttg ccaagcccgg
     1681 tcaacggcgc aggtcgtaaa agtgcgaggc ttagaaagag cttggaagtt tcctacaacc
     1741 ctgttcctta gggattcgtg ggttcgaatc ccacctcccg catcaataat aaattatgtt
     1801 tactataata tattggaccg attcattagt atatattgtt tgaaaagctt aaataatatt
     1861 ctgattttat gtaacaggtt gaagaatcca tttagttgga gaatacattt caaacatcgt
     1921 tttgatgttt tatgctatta cagaggatag atttatgaga caacagcaaa aaagagtgca
     1981 aaaagcaaga tttgacaaac aaaataaaga gtttgactat aataaaccta tctcaaagtg
     2041 caatatttgt tatactttgt gtggttggca ctgctatgaa tgtgaaactg atttttgtca
     2101 agaccatttt gttcaacata aggaaagagg gtcgtgtaag aaagttatac agtgacgggc
     2161 atagtttaat atttatctaa ttataaggca gatctagagt atcgacccct tttttcaata
     2221 ttgctcacta tcttaaatat agtggatgct acttttgaat atttttgagt atacccatta
     2281 caaaaatttt c
//
LOCUS       DASPFX010000388         2768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_965543, whole genome shotgun sequence.
ACCESSION   DASPFX010000388 DASPFX010000000
VERSION     DASPFX010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2768
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_965543"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VD694_08280"
     CDS             <1..322
                     /locus_tag="VD694_08280"
                     /inference="COORDINATES: protein motif:HMM:NF003084.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="translation initiation factor eIF-1A"
                     /protein_id="HXW12741.1"
                     /translation="NEVFKLGKRKVLSESDLKELVMPQQGELLGRVIKLVGGDNIIVK
                     CTDGKVRTCRIRGKIKRRMWIREHDVVLIAPWDFQTDKADIVWRYISAHAEKLQKDGL
                     LEGV"
     gene            complement(337..1485)
                     /locus_tag="VD694_08285"
     CDS             complement(337..1485)
                     /locus_tag="VD694_08285"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HXW12742.1"
                     /translation="MSQSTDDIKESDLPVGKKKSLRTGYTTGTCAAAATKAALSTLVN
                     KEKLSKVNVSLPKDKQITIDIAWIKQNDDRTVTAAVIKDGGDDPDVTNGAEVCSTVSL
                     LETADKIVIDGGIGVGRVTKPGLGLEIGKAAINPTPLKMIYHAVEEILSQEKKKSYGL
                     SVIISVPEGQEIAKKTDNPRLGILGGISILGTTGIVIPYSTASFAASIRQSIDVSKAM
                     GSDSVILTTGGRSEDFARAIYGTTIADHAYIQIGDFIGFGVKQCAIKEIRKVYVVGFI
                     GKITKMAMGIKQTHVKGSHVDMNFLADIASRCGADKELVKQIKGANTARHVSELIDKY
                     GLNSFYDNLCKEVHVHLTKYSQSQLKIKIILLDFDGKIIGNYPKDDNQ"
     gene            complement(1499..2251)
                     /locus_tag="VD694_08290"
     CDS             complement(1499..2251)
                     /locus_tag="VD694_08290"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HXW12743.1"
                     /translation="MSLDGKVGIVTGGAGGLGLEIAKELARKGAVVIITSRKKSKLQR
                     ACNMIGTNCYGFELDIIKAKSIIQFVKRISKDFDTVDVLINNAGFPFERKIWFKKVHE
                     ITDKELLNILQVDLIGSFRISRQILKIMMKKRNGVIINIASTPAISGHSYGSPYSVAK
                     AGLIGLTKHIALEYGRYNIRTYSVALGDIDTQAMRKSLSKSELQKARNENTLKRLGRP
                     EEIAKSIVSIAGEDFTFSTGNTLIIDGGKLVI"
     gene            2358..>2768
                     /locus_tag="VD694_08295"
     CDS             2358..>2768
                     /locus_tag="VD694_08295"
                     /inference="COORDINATES: protein motif:HMM:NF020764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12744.1"
                     /translation="MSSFSKAGHLVSLLNKSDFRILKVFASSLKNRQLLNLTTLSQYS
                     NLSQGLIKHHLERLVKFGLISKSNMGYTLLVTGLDIYVLKILSNKNMITALGPQIGIG
                     KEAEVYLARDSLDQDRILKMFRLGRSSFKQIKRKR"
BASE COUNT          831 a          536 c          466 g          935 t
ORIGIN      
        1 aaatgaggtt tttaaattag gtaaaagaaa ggtactaagt gaatctgatc taaaggaatt
       61 agtaatgcca caacagggcg aacttcttgg acgtgtcata aaattagtcg gtggagataa
      121 catcattgtg aaatgtactg atggtaaagt cagaacatgt aggatcagag gaaagataaa
      181 aaggcgtatg tggataagag aacatgatgt agtacttatt gcaccatggg attttcaaac
      241 agataaagca gacattgtct ggagatatat ttcagctcat gctgaaaagc tccaaaaaga
      301 cggtttgcta gagggagttt agaaaaaaaa tcaagtttat tggttatcgt ctttaggata
      361 attcccaatt atcttaccat caaaatcaag taaaatgatt ttaatcttta attgagattg
      421 tgaatatttt gtcaaatgaa cgtgaacctc tttgcataga ttatcataaa aagagttcaa
      481 tccgtactta tcaatcaatt cactaacatg tcgcgcagta tttgctccct ttatctgctt
      541 tacaagttct ttatcggcac cgcatctact tgctatatcc gccagaaaat tcatatcgac
      601 atgagatccc tttacatgtg tttgttttat ccccatcgcc atttttgtta ttttaccaat
      661 aaagcctacc acgtatacct tccttatttc cttgattgca cactgtttga ctccaaatcc
      721 aataaagtct ccaatttgaa tataagcatg atcagcaatt gtggttccgt aaatagcacg
      781 tgcaaagtct tcgctccttc ctccagtagt taagataaca gaatcagaac ccatagcttt
      841 agacacatca atactttggc gaattgaagc tgcaaaggat gcagtagagt atggaattac
      901 tattcccgtt gttcctaaaa ttgatatacc tccaagtatg cctaatctgg gattgtcggt
      961 tttcttggca atttcttgtc cttctggtac acttattatt accgacaaac catagctctt
     1021 tttcttttct tggcttaata tttcttcaac tgcatgatat atcatcttca atggagtggg
     1081 attaatagca gccttaccaa tttcaagtcc taatcccggt ttagtaactc tgcctacacc
     1141 aattccacca tcaattacta tcttgtctgc agtttccaat agcgatactg ttgaacaaac
     1201 ttccgcgcca ttagtaacat caggatcatc gcctccatcc ttaatgactg cagccgtaac
     1261 agttctatca tcattttgtt ttatccaggc gatatctatt gttatttgtt tatcctttgg
     1321 tagagaaacg tttacttttg atagtttttc tttgttaacc agagttgaaa gtgcagcctt
     1381 tgtagcagct gctgcacagg taccggttgt atatccggtt cgaagcgatt tttttttacc
     1441 aacaggtaga tcactttctt tgatatcgtc tgtgctctga gacatacatt ctcactcttt
     1501 aaataactaa tttacctccg tcaataataa gagtatttcc agtagagaag gtaaaatcct
     1561 cacctgcaat cgaaacaata ctctttgcaa tttcttcagg ccgacccagt cttttcaagg
     1621 tattttcatt tcttgctttt tgtaattcac tttttgaaag ggatttacgc atagcttgtg
     1681 tatctatgtc tcccaaagca acggagtatg ttctgatatt atatcgccca tattctaatg
     1741 caatatgctt agtcagacca atcaatccgg cctttgctac agagtatgga gaaccgtatg
     1801 aatgtcccga gattgctgga gttgacgcga tattgatgat tactccattt ctttttttca
     1861 tcatgatttt caatatttgc ctggaaattc ggaatgagcc gattagatca acttgaagga
     1921 tattcaacaa ctccttgtca gttatctcat gtactttctt aaaccaaatt tttctttcaa
     1981 atggaaaccc ggcattattt atcaacacat caaccgtatc gaaatctttt gagatgcgtt
     2041 tgacaaattg aattatactt ttcgctttga taatatcaag ttcgaatccg taacaattcg
     2101 tacctatcat attacaggcc ctttgcagct ttgatttttt tctggaggta atgataacaa
     2161 cggctccctt tcttgctaat tcctttgcaa tttctaatcc cagtcctccc gcgccaccag
     2221 ttacaatacc tacttttcca tcaagagaca acgatcctag attcgtgaat tggatatttt
     2281 aattgttatc tataagataa cataataccc ataacatgat aaccttttaa tttaatattg
     2341 tcggtagatg cattcagttg tcttcttttt caaaggcagg acaccttgtt tcattattga
     2401 ataagagtga ctttagaatc ctaaaggtgt ttgcttcgtc tttgaaaaat cgtcaacttt
     2461 tgaatcttac tactctcagt caatattcaa acttgagtca aggtttaatt aaacatcatc
     2521 tagaacgtct tgtcaagttt ggattgataa gcaaaagtaa catgggatat acactattgg
     2581 taacaggttt agatatttac gtactaaaga ttctttctaa caagaacatg ataactgcac
     2641 ttggacctca aataggtatc ggaaaggaag cagaagttta tctagctcga gattcgttag
     2701 atcaggatcg tattttaaag atgttcagac taggaagatc tagtttcaaa caaataaaga
     2761 ggaaacga
//
LOCUS       DASPFX010000389         4513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_825644, whole genome shotgun sequence.
ACCESSION   DASPFX010000389 DASPFX010000000
VERSION     DASPFX010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_825644"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..958)
                     /gene="radA"
                     /locus_tag="VD694_08300"
     CDS             complement(<1..958)
                     /gene="radA"
                     /locus_tag="VD694_08300"
                     /inference="COORDINATES: protein motif:HMM:NF003301.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HXW12745.1"
                     /translation="MRITRFFKRRYQILYDNYKLSDKGSDSATDIDTMKDIGPATRTS
                     LKEAGFRSIKDLVIRGPMDIAEATGIAIEKCITLCNKARETLEDIGVFDKPFITANQI
                     YEKRKSEYRIATGSKNLDELLGGGIETRAITELYGEFGTGKTQICHTLCVTVQQNDAD
                     GDLSRALYIDTENTFRPERIASIASARNFDPNTTLENVIVAKAYNSSHQEVIIQESPN
                     VINLHNIKLMIVDSIVSHYRAEFLGRSFLSERQQRINRLLHILLRIAETCKIAVVLTN
                     QIQSSPDAIFGDPNKATGGNVMAHSSTYRLYLKKSGKNRIARM"
     gene            complement(987..1793)
                     /locus_tag="VD694_08305"
     CDS             complement(987..1793)
                     /locus_tag="VD694_08305"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HXW12746.1"
                     /translation="MGNTLANKTIAITRSESNNAEFIRLVKQEGGIPISLPTMKLIPI
                     DSKQFLKTFSQICTRHYHYYVFMSPSSVDLFFKLVKENKLTRLLEEQLAKCDVIAIGP
                     STRKKLELNNVSVKSQPNDYSTRGILKLLKKLQLKPGTRILIPRSAASNSFLKEQLDA
                     MSIIVDEFYIYYPQAETSSQSWIEFSQQIKMNKVNVIIFTSPSAVSYFFSIMHEVFPD
                     FLTYIKNIVLISIGPNTTSELRSKDIIPVESEEHTVRGTVQLVDRIFSKK"
     gene            complement(1866..2639)
                     /gene="cobA"
                     /locus_tag="VD694_08310"
     CDS             complement(1866..2639)
                     /gene="cobA"
                     /locus_tag="VD694_08310"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HXW12747.1"
                     /translation="MERSKVKSRGKVYICGAGPGDSDLLTLRASKLLSECDVILYDRL
                     VNKGILNMASSNSEKVYVGRMSGDPTTNQKITNELMLKYANDGKKILRLKGGDPFIFG
                     RGGEEAEFLSSKNIKYEIVPGISSLNGAAAYSGIPLTHRDYSSSVVILTGHESIEKKK
                     STIKWKSLTKAADTIVIFMGLEQLKDISRKLIGGGLTRNAKIAVIENATSNKQRVIVG
                     NLGNIDKKVKNKKIQSPAIIIVGNVVGIQDKINWFFPSN"
     gene            complement(2621..3574)
                     /gene="hemC"
                     /locus_tag="VD694_08315"
     CDS             complement(2621..3574)
                     /gene="hemC"
                     /locus_tag="VD694_08315"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HXW12748.1"
                     /translation="MSKYIVATRGSKLALIQTEIVTNNLHKLYPTLECDIVKIKSSGD
                     INKNKVLFSVDEKGVFEKEVDRAVLDEEADFAVHSIKDIPTDIDDELVVASILKREKP
                     NDVLIGKSKSRIEELEPNSQVGTSSLRRAVQIKRKNPDVKVIPIRGNVESRVRKCVEG
                     PYDALVLAEAGLKRLHLNNFIVQRFSYRDFVPAPGQGAIGIVCRKDNKNVLAKLQRIE
                     DKPSRYSIDAERSLIRYLNAGCRFPVGAIALPNLRTNKIMIYATVFSADGAQAINVKK
                     TDVISNATQLGSDVANDLLSKGAADFAHEWREALEKWNDQK"
     gene            complement(3567..>4513)
                     /locus_tag="VD694_08320"
     CDS             complement(3567..>4513)
                     /locus_tag="VD694_08320"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HXW12749.1"
                     /translation="TGAESTMHSIRLARAFTKKKKIVKFDGCYHGAYDYVMVNPGSSA
                     STNSFNGNLEESMNQTLVLPYNDIGALENLVKNNNDIACVIVEPVLANMGLIIPEEDY
                     LSKLRRICDLEDIVLIFDEVVTGFRLSPGGASEYFGVIPDIMTLAKSIANGFPLSAIV
                     GKREIMELLSPKGTVFQGSTYAGNPISTSAGIATLEILSSEKNELYPKLSRSSDILSN
                     GIRDHLRDLKFQATVNNISSMFQLYFTNEKIRDASSVKKSNTCLYKKLFDELLKSGIF
                     IPPSQFETCFISYSHDDDDIDRTIESFAKALRKVKEFE"
BASE COUNT         1264 a          901 c          747 g         1601 t
ORIGIN      
        1 ccattcttgc aatccgattc ttacctgatt tcttcaaata aagtcggtac gtgctactgt
       61 gtgccatgac gtttcctcct gttgccttgt taggatcgcc aaatattgca tcaggtgatg
      121 attgaatctg attcgtcaat accactgcaa ttttgcatgt ttcagcaatc ctcaggagta
      181 tgtgtagcaa tctgttaatt cgttgctgcc tttctgacaa gaaagatctg ccaagaaatt
      241 cagctctgta gtgagacaca atggaatcaa ctatcatgag tttgatattg tgtaaattga
      301 taacatttgg agattcctga ataattacct cttgatgaga gctattgtat gcttttgcaa
      361 caatcacatt ttcaagggtg gtgttgggat caaagttcct tgcagatgca attgaggcaa
      421 ttctttctgg tctaaatgta ttttctgtat caatgtatag agccctggat aaatcaccat
      481 ctgcgtcatt ttgttgaaca gtaacgcaaa gagtgtgaca aatttgggtc ttacctgtgc
      541 caaattcacc atataattca gtgattgctc ttgtttctat tcctccgccc aatagttcat
      601 ccaggttttt tgaacctgta gcaatacggt attctgattt cctcttttcg taaatttgat
      661 ttgcagtaat aaagggcttg tcaaaaacgc caatatcttc taaggtttct ctcgccttat
      721 tgcagagcgt tatgcatttc tctattgcaa tcccggtagc ttctgcaata tccatagggc
      781 ccctaataac tagatccttg attgacctaa aaccggcttc cttcagagaa gttctagttg
      841 caggacctat gtccttcatt gtgtcaatgt cagttgcgct atcgctacct ttatcggaca
      901 atttgtaatt atcatataat atctggtacc ttcgtttgaa aaaccttgtt attctcattc
      961 atagtcaaag tgaacaacat gtatttttat ttcttggaaa aaatccggtc taccaattgt
     1021 acagtgcctc taactgtatg ttcctcagat tcaactggaa taatatcttt tgatctaagt
     1081 tcacttgtcg tattaggtcc aatacttatc aaaacaatgt ttttgatgta ggtcaggaaa
     1141 tcgggaaaca cttcatgcat tatggaaaag aaataggaaa ctgccgaagg gctagtaaaa
     1201 attatcacat ttaccttgtt catttttatt tgctgtgaga actcgatcca cgactgactc
     1261 gacgtttctg cttgaggata atagatgtaa aattcatcca caattattga cattgcatct
     1321 agttgttctt ttagaaaaga gtttgatgca gcactcctgg gtatcaatat ccgggttcca
     1381 ggtttgagtt gtaatttttt taacaatttt agtataccgc gagttgaata atcatttggc
     1441 tgcgacttga ccgaaacgtt atttaattca agtttttttc ttgttgacgg tcctattgca
     1501 ataacatcac attttgctaa ttgctcctcg agcaaacgag taagtttatt ttccttcact
     1561 aatttgaaga atagatctac agaactagga ctcataaaga cgtaataatg gtaatgtctg
     1621 gtacaaattt gagagaatgt tttaagaaat tgctttgaat caattggaat taatttcatt
     1681 gttggtaggg aaatcggtat tccgccttct tgttttacca atcgtataaa ctcagcatta
     1741 tttgattcac tacgtgttat tgcaatggtc ttgtttgcta aagtattacc caataagata
     1801 ataaaatttg cttgtcataa aagcattagg attactgttt taggatattg ataatataga
     1861 ctagtctaat tacttggaaa aaaccagttt attttgtcct gaatccccac aacatttccc
     1921 acaattatta tcgcaggtga ttgaattttt ttgttcttta cctttttgtc aatatttccc
     1981 aaattaccaa caattactct ctgtttattt gaagtggcat tttcaatgac tgcaatcttt
     2041 gcatttctgg tcaatccccc tccaattagc tttctggaaa tatcttttag ttgttcgagg
     2101 cccataaaaa tcacaatggt atcagccgcc tttgtaaggg acttccattt tatggttgat
     2161 ttttttttct caattgattc atgacctgtt agtatcacga ctgatgatga ataatctcta
     2221 tgtgttaatg gaatacccga atatgctgct gcgccattta gagaagatat tccgggaact
     2281 atttcatact tgatattttt agatgagaga aattctgctt cttcgccacc acggccaaaa
     2341 ataaatggat caccgccctt cagccttagt attttttttc catcgtttgc atactttaac
     2401 attagttcat tcgtaatctt ttggttagtg gttggatcac ctgacattct tccaacataa
     2461 actttttctg aattagaaga cgccatatta agaatccctt tgtttactaa ccgatcgtaa
     2521 agtattacat cgcattctga caatagtttt gaagctctta acgttaacaa gtcactgtcc
     2581 cccggacctg cgccgcaaat atacacttta cctcttgatt ttacttttga tcgttccact
     2641 tttctaatgc ctccctccat tcatgagcaa aatctgctgc tccctttgat aatagatcat
     2701 ttgcgacatc acttccaagc tgggttgcat ttgatatcac atctgttttt tttacgttta
     2761 ttgcttgagc gccatcagcg gaaaaaactg tagcatagat catgattttg tttgttctta
     2821 aattgggtaa tgctatggcg cccactggaa atctgcaacc cgcattcaag taacgaataa
     2881 gtgatcgttc tgcatcgata gaatatcttg atggcttatc ttcaattcgt tgtaattttg
     2941 caagtacgtt cttgttatct tttcgacaca caattcctat tgctccttgc ccaggagctg
     3001 gaacgaaatc tcgatagcta aatcgttgaa caataaaatt attcaggtga agtcttttta
     3061 gacccgcttc tgctaaaaca agggcatcat aaggaccttc aacacacttt cttacccgac
     3121 tttcgacatt acctcttatt ggaatcactt ttacatccgg attcttcctt tttatttgga
     3181 cagctcttct caaactagat gtgcctactt gagagttggg ctccaactct tctattcttg
     3241 attttgattt tcctatcaag acatcgtttg gtttttctcg ttttagtatc gatgctacga
     3301 ctaattcatc gtcaatatct gttggaatgt ccttaatgct gtgcactgca aaatcagctt
     3361 cctcatcaag aactgctcta tcaacttcct tctcaaaaac tcctttttcg tctacagaaa
     3421 aaagtacttt gttcttattg atatccccac ttgatttaat ctttacaata tcgcattcta
     3481 aagttggata gagtttgtgg agattgttag ttactatttc agtctgtatt aaagctaatt
     3541 tactcccacg cgttgcgact atatacttac tcaaattctt tcacttttct caatgctttt
     3601 gcaaatgatt caattgtcct atctatatca tcatcatcat gtgaataaga tatgaaacaa
     3661 gtttcaaatt gagatggtgg aataaaaatc ccggatttta agagttcgtc aaatagtttt
     3721 ttataaaggc aagtatttga ttttttaaca ctggacgcat ctcttatttt ttcattagta
     3781 aaataaagct ggaacataga agagatatta ttcacagtag cctgaaattt tagatctctc
     3841 aagtgatctc taattccatt cgataaaata tcactagaac gcgagagctt tggatacaac
     3901 tcatttttct cactacttag tatttccaaa gttgcaatac ctgcacttgt tgaaattgga
     3961 tttcccgcat atgtacttcc ttggaataca gttccttttg gagataacaa ttccattatc
     4021 tcccttttcc caactatggc agaaagtggg aacccattgg caattgattt tgcaagtgtc
     4081 atgatgtcgg gtatcactcc aaaatattcc gaggcgcctc cgggtgaaag tctaaaacca
     4141 gtcacaactt catcaaaaat caagacaatg tcttccaaat cacagattct tcttaattta
     4201 ctaaggtaat cttcctctgg aattattaag cccatgtttg ctaaaaccgg ttccactatc
     4261 acacatgcaa tatcattgtt attcttgacc agattttcaa gtgcaccgat gtcgttgtaa
     4321 gggagtacca atgtttgatt catcgactct tctaaattgc cattaaatga attagttgag
     4381 gcactagaac ctggattcac cataacataa tcataagcac catgataaca tccatcaaac
     4441 ttcacaatct tttttttctt tgtaaaagcc cttgccagcc taatagagtg catagttgat
     4501 tctgctcctg tgt
//
LOCUS       DASPFX010000390         2640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1252565, whole genome shotgun sequence.
ACCESSION   DASPFX010000390 DASPFX010000000
VERSION     DASPFX010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1252565"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VD694_08325"
     CDS             complement(<1..364)
                     /locus_tag="VD694_08325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12750.1"
                     /translation="MNKILIIPLLVTTISLLVPHSFAISEIKDEIEVIPPPNWKPNAS
                     NNSTSIIWFQNTTKSVFAIIKAPDKLTFPLFLAGPFMIGYLKYKGLLESSDQLDFGQN
                     NHGYRYFLNLSSPSKLLDS"
     gene            complement(507..725)
                     /locus_tag="VD694_08330"
     CDS             complement(507..725)
                     /locus_tag="VD694_08330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12751.1"
                     /translation="MVKNKKQIKIIHESAANYTFSNTGSTNIERQEKSDTANKTTQST
                     EKEIPKARSIHLRNSKIRQKNRIGAEQL"
     gene            complement(1029..1358)
                     /locus_tag="VD694_08335"
     CDS             complement(1029..1358)
                     /locus_tag="VD694_08335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12752.1"
                     /translation="MFKMKHMKIAIFVLTVSILGTSALVANSGNMAYAQGNKTQGDVT
                     TTIDADSLIKALKARHPVLAQLVTNEDKDLVVKLKDLDTKEAVKTALALNMLHLLQQY
                     REIDEPQ"
     gene            1695..2288
                     /locus_tag="VD694_08340"
     CDS             1695..2288
                     /locus_tag="VD694_08340"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12753.1"
                     /translation="MSAHNGMTVDKQYARSFNKERANLEPTIESNFAYQNSSIPKENL
                     PSFSKILIADDGKDESNRLLNYAISLSKYSGAELLILRILENMKKMGNVSVQGSNENN
                     ASNKDMKREIKGEIIDEMEKKINRCREAGCENKISYKFRVGGAKEEIINEVKEGNYDL
                     IVLRSSRSSHKDSWMRSFFSDARKIISNINIPVLIVQ"
     gene            complement(2451..>2640)
                     /locus_tag="VD694_08345"
     CDS             complement(2451..>2640)
                     /locus_tag="VD694_08345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12754.1"
                     /translation="ILTKYPSSPILFVTANEYLDSELSKHRIFDGKKIKTLLKPARLQ
                     QIENDMLELVAEKPYPQV"
BASE COUNT          887 a          441 c          462 g          850 t
ORIGIN      
        1 aagaatccag cagttttgaa ggagaagaaa ggttcaggaa atatctgtaa ccatgattgt
       61 tctggccaaa gtctaactga tctgacgatt caagcagtcc cttatatttt aaataaccta
      121 tcataaaagg gccagccaaa aataatggaa acgtcaactt atcaggcgcc ttaattattg
      181 caaagacact cttagtagtg ttttgaaacc atataatgct agtcgaatta ttagaagcat
      241 tgggtttcca atttggagga ggaattactt ctatctcatc tttaatctca ctgattgcaa
      301 agctatgggg aactagtaat gaaattgttg tgactaacaa agggataatc agaattttat
      361 tcaatcactt tcaccaatta tctacaaatc cacctgcttg aacaaataga acatgtctta
      421 atctatacgg ctttccatac tgatccgagt acgattatca attcaatatt gaagagcgct
      481 aattacacac caagaaggtt acttgtttat agttgttcgg cacctatcct atttttctgt
      541 cgaatttttg agtttctcaa atgtatggat cgcgccttag gtatctcctt ttctgtactc
      601 tgtgtggtct tatttgcagt atcagacttt tcctgtctct ctatatttgt agaaccagtg
      661 ttcgaaaacg tataatttgc agcggattcg tgtattattt ttatttgttt tttgtttttt
      721 accaatttta atcctgaatt tagaatatcg ggacaattac tttagtttta tgttaagtac
      781 gaatgataga aaccctgtaa tttatcatat acatgtccgt cggtacccac gccgcttccg
      841 gttctaaaac tgggttctaa tgtagaaatt aactgctaaa atttatactt atcctcttgt
      901 gagtatattt ttaacaattc cgtattaccg cttatctaaa ttgttgaaaa actaattatg
      961 acgaattgga tttcaaatat acaataaatg ttataattta gaataaaaaa agaggaagaa
     1021 cctaagacct attgtggttc gtctatttcc ctatattgtt gtagtaaatg tagcatattc
     1081 agcgctaatg cagtcttcac tgcttccttc gtatccaggt ccttgagttt cacaactaag
     1141 tctttatctt cattcgttac cagttgagct aagactggat gtcttgcttt tagggcttta
     1201 atcaaactat cggcgtcaat ggttgtagtt acatcacctt gtgttttatt accctgcgca
     1261 taggccatat ttcctgaatt ggcaaccagt gcactagttc ccagtattga tactgtcaat
     1321 acaaatatag caattttcat atgtttcatt ttaaacatta cttgttaata gtataggttc
     1381 atatttaact gattgcatta caaatcatac catcaatagt tctcagatga tttaacgatg
     1441 ttactggaaa gatgaaatga tcagatgtat gatattttag aagggattat cagacactag
     1501 aaaaatgcga tatcctgaac agaatatatg gatatgacat cagcatttgt taatctataa
     1561 cggaatgaag cattagaggg tattccctca ttaccaatgc aaaagatttt tactaaaagg
     1621 ggatgcaaaa caccataaaa aagcatcggg aaaacgcttt cttgaagaga agtatctata
     1681 acctttaaat tctattgagt gcacataatg gtatgactgt cgataagcaa tatgcacgct
     1741 ctttcaacaa agaaagagca aacttagaac caacaataga atctaacttt gcttatcaaa
     1801 actcctcaat tccaaaggaa aatcttcctt catttagtaa aatcctaatt gctgacgatg
     1861 gaaaagatga atcaaatagg ttgcttaact atgctatctc tctatctaaa tactcaggag
     1921 cagaattact aattttacga attttagaaa atatgaagaa aatgggaaat gtctcagtac
     1981 aaggttctaa tgaaaataac gcgagtaata aggatatgaa acgagagatc aaaggagaga
     2041 tcatagatga aatggaaaaa aagataaaca gatgcaggga agcaggctgt gaaaataaaa
     2101 tttcgtataa attcagagtg ggcggtgcaa aagaagaaat aattaatgag gttaaagagg
     2161 gaaattacga tttaatagtc ttaaggagtt cgaggagttc acataaagat tcttggatga
     2221 ggtccttctt cagcgatgca cgaaaaataa ttagtaacat aaacatacct gttttgatag
     2281 tacagtagtt taaaccaaaa tcttgatgaa ctaatagatt aactaagctt gtcgaagagg
     2341 tccacacgca attacattcc tacgaagtgc agaagacata tcattcccag ccttccccct
     2401 gcttgacgag agaaatgcca cgaaagaaag taatttaaat atgctctaaa ttagacctga
     2461 ggatacggct tctctgcaac tagttctaac atgtcatttt ctatctgctg taatcttgca
     2521 ggtttcaata atgtttttat tttcttcccg tcaaatattc ggtgtttaga caattcagag
     2581 tctagatatt cattagcagt aacgaaaagt ataggtgatg aagggtattt agtcaaaatt
//
LOCUS       DASPFX010000391         3372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1554161, whole genome shotgun sequence.
ACCESSION   DASPFX010000391 DASPFX010000000
VERSION     DASPFX010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1554161"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..653)
                     /locus_tag="VD694_08350"
     CDS             complement(165..653)
                     /locus_tag="VD694_08350"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12755.1"
                     /translation="MPSATTTVGQLMTERLETISPSDTAQEAAKKMRDKKVSSLVVTD
                     VEDKPIGIVTERDLVRQVCTKVINSNDVIVQRIMSSPLATIDANSSVEVAADIMIQNK
                     VRHLLVVNENKVLGIITPSDFTGYLKEKLNLDDVNARILQSLKEDEEEENSSTTINKS
                     TA"
     gene            complement(891..1457)
                     /locus_tag="VD694_08355"
     CDS             complement(891..1457)
                     /locus_tag="VD694_08355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12756.1"
                     /translation="MKIQNKMGHVQADKFRALAQYEIKDNQNYLAQVYFKYNNYNGNG
                     GTDSIGFLYNYHDGENKYSTGIRADGYSEIKEKNDGKYSDNHNPKRVYLANENEGESS
                     RNNEIPSMRWIGLKIVVSQDHGYNNIKMYIDKGSGWTYITEWTDDENLMNGGLIGLRT
                     DGYDVEFRDFKVMDVGGNVVSPLNNTRI"
     gene            1531..1683
                     /locus_tag="VD694_08360"
     CDS             1531..1683
                     /locus_tag="VD694_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12757.1"
                     /translation="MKTLVTRTFGANDGIVANAVEESMKKERDNPRFRANNMPPRLLN
                     CILLLN"
     gene            2173..2928
                     /locus_tag="VD694_08365"
     CDS             2173..2928
                     /locus_tag="VD694_08365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12758.1"
                     /translation="MTKRLPIFFLMLLMISSVFFIQVDASNDDDNREEETDFSDDIDE
                     RMSSDFPKRQDENFQQDSSMSEDEVFAGFQMSDDNGYDTRRSVTEQDFQGTPESVIIE
                     KGNVGIEVFLDYILFLKQQGNSDVLLNPARSYSVGSFSLTEDESILLDFDDCHNTDCS
                     QPEQIRAVYLVDSDTDDIDIVNANIDEGQIISLEQSETDEFEYMMPEQIQPISNPNED
                     SSHKIVIHTEQKDGIDAFYIANGVEVYTVSGSY"
     gene            3138..>3372
                     /locus_tag="VD694_08370"
     CDS             3138..>3372
                     /locus_tag="VD694_08370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12759.1"
                     /translation="MVTRLFSQKEMDYLNSQRLARIATASAPTLSEEAGSAQPDVVPV
                     GYDFDGDCFYVGGMNLLKSTKYKNVLHNNKVAIV"
BASE COUNT         1017 a          620 c          568 g         1167 t
ORIGIN      
        1 aatgtcagtt atattcgaaa ctcatacgag tcctcttgtt tttccctatg caaattgata
       61 ttgtctctat aatcaaccaa aaccacttct gtgatatgtt ttgtcttatc gcctaaagca
      121 cagtcaaaaa atagagggtg tctagacaag cgtcaaatga attcttatgc agttgatttg
      181 ttaatagtag tagagctgtt ttcttcttcc tcgtcttctt ttaatgattg caatattcgt
      241 gcatttacat catccaaatt caacttttcc ttaagatacc ctgtgaaatc gcttggagtg
      301 atgattccta ataccttgtt ttcattgacg acgagcaaat gtcgtacttt attctgaatc
      361 ataatatcag ctgctacttc aactgaggaa ttagcatcaa tagtagctag aggtgaggac
      421 atgatacgtt gaactattac gtcattgctg ttgataacct tggtacatac ttgtctaacc
      481 aagtctcgtt ctgttactat tcctataggt ttgtcttcaa catcagtaac cacaagtgaa
      541 ctcacttttt tgtctctcat tttctttgct gcttcttgtg cagtatcaga aggacttatg
      601 gtctctagcc tttcggtcat aagctgacct actgtcgtcg ttgctgatgg catacttttt
      661 ttagttattg ctagatgata ttattatata taactgtcaa aataattcta gaatagtaaa
      721 cgctaaccgt cacgatatta caaagtaaaa agtagaaagg ttacgttatt actcagggga
      781 tcttatctta tttcaaatgg agaatctttt aatctatatg cagtttgttg attcatctta
      841 tattatgcta gaaagttatg aagataatga cagactcata cttagtttag ttatattcta
      901 gtattgttta acgggctcac tacatttcct ccaacatcca ttactttaaa gtctctaaat
      961 tctacatcat aaccatcagt tctgagtcca atgagtcctc cattcattaa gttctcatca
     1021 tcggtccact cagtaatata tgtccagccg ctgcctttgt caatatacat cttaatatta
     1081 ttatagccat gatcttgact tacaactatc ttcagtccaa tccatctcat cgaaggtatt
     1141 tcattatttc tgctactctc tccttcattc tcatttgcaa gataaaccct tttgggatta
     1201 tgattgtcac tatattttcc atcatttttt tcctttatct ctgaatagcc atctgctctt
     1261 atgcctgtgc tatacttatt ttctccatca tggtaattat acaaaaaccc tatgctatct
     1321 gttccaccat ttccattgta attattatat ttgaagtata cttgagccaa ataattttga
     1381 ttgtctttta tttcgtactg ggctagtgcc ctgaatttat cagcttgtac atgacccatt
     1441 ttattttgta ttttcatgtc tcattggttt atcaaccaga atagatcatc tgcatattct
     1501 cgcccagtac tatctaggct acgatcttga ttgaaaacat tagtaaccag aacctttggc
     1561 gccaatgatg gtatcgtagc taatgctgtt gaggaatcta tgaaaaagga gagagacaac
     1621 cccagattca gagctaataa catgcctcca agacttctta actgcatctt gttactgaac
     1681 taacttggat ataaaattct tatgaaaagc gaggtaaagt catattttat tcaaatagta
     1741 gtaggaaagt tccaaatatc tataaaggaa atttagcgat tctaagctag tcccatatct
     1801 ctcattagaa tttatcaaat aaattactga aatttaagag attattacct actcagaatc
     1861 aatcttaaaa atctccgagt tatgcttgct gcatcacgct tttgcaattc cgtaatgact
     1921 atttttattt agtgtaggtg tttcgagatc tacggtaccg tccaaaagcc ttgtcgatgt
     1981 ttgaaagcgc aatattagct gaagtataat caaaaacagt acgattttag aaatattatt
     2041 gtacagaact gtgattttga taaaccagtc gtttctgata taagatagaa atacagtctc
     2101 tattttgtta tgacgacaaa tgaatataga cgcattagtc tttcaaatag aattgaagac
     2161 tttgagttgt tgatgactaa aagactacct atattttttc ttatgctgtt aatgatatct
     2221 tctgtatttt tcatccaagt agatgctagt aatgatgatg ataataggga agaggaaaca
     2281 gatttctctg atgatatcga cgaacgtatg agttctgact ttcctaaacg tcaagacgag
     2341 aattttcaac aagattcatc tatgagtgag gatgaagtct tcgcaggatt tcagatgagt
     2401 gatgataatg gctacgatac taggcgctct gtcaccgaac aagacttcca aggaaccccg
     2461 gagtctgtaa taatcgagaa gggaaatgtt ggaatagaag ttttccttga ttatatttta
     2521 tttctgaagc agcaaggtaa tagcgacgtt ttactaaacc ctgctagatc ttatagtgta
     2581 ggctcctttt ctcttacaga agatgagtca attttactag actttgatga ttgtcataac
     2641 actgactgca gtcaaccgga acagataaga gcagtctatc ttgttgattc ggatacagac
     2701 gacatagata tagtgaatgc taatattgat gaaggacaaa taatatcgct tgagcaatct
     2761 gaaacagatg agtttgaata catgatgcca gagcaaatcc agcctattag taatcctaat
     2821 gaagatagtt ctcataagat tgtcatacat actgagcaaa aggatgggat cgatgccttt
     2881 tatatcgcaa acggtgtgga agtttatacc gtatcaggat catattagaa ctaaccatat
     2941 aagaagtagt cttcctggtt ggttgtattt taccactact cgaaaatagc acggatttga
     3001 atctgcgtgt aacggacagt ccttactatt cctctttctt gtctaccaaa ttttttgatt
     3061 cttaaacgtc atcacattta atatcactag tagttgtcat tagctttatc tctcatcacg
     3121 tagtatacta tatgacaatg gtcactaggc ttttttctca aaaggaaatg gactatctca
     3181 attcgcagcg acttgctaga atagctacag cttctgctcc cactttatca gaagaagcag
     3241 gctctgcaca gccagatgtg gtacctgttg gttatgattt tgatggtgac tgcttttatg
     3301 taggcggaat gaatcttctc aaatctacca aatacaaaaa tgtactacat aataataagg
     3361 tcgcaattgt aa
//
LOCUS       DASPFX010000392         4602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_314638, whole genome shotgun sequence.
ACCESSION   DASPFX010000392 DASPFX010000000
VERSION     DASPFX010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314638"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(670..1161)
                     /locus_tag="VD694_08375"
     CDS             complement(670..1161)
                     /locus_tag="VD694_08375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12760.1"
                     /translation="MIGSKTPTGVIIGLIAILFVGPSSIFAQNIFNEADFQIKDFGII
                     NGNPWLIVEGKAGGSTPQNTSTIYAYTFVTDNGTFAVMSHLYDDTDEVDNDTQWHTHR
                     VTLDDKNCIAEINDNGDTEVTDLVKVTNVITRNVSNVFTAELSLNNADSSICVTKVFD
                     SAP"
     gene            1682..2998
                     /locus_tag="VD694_08380"
     CDS             1682..2998
                     /locus_tag="VD694_08380"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HXW12761.1"
                     /translation="MNHIFDFYNKKIFTKFFSVVAFWILLISSSSQINFNFINKADAQ
                     SCTDNLPISGVTASGNDGNVPSNVLDNNLNTRWSSHGIGQWIRADLGSTKNICSVDIA
                     WYAGNARQYHFVIATSTDGTTFTNKFSGDSSGTTLNSEKYTFAATDARYVRITVNGNT
                     VNNWASMTELDVYGSSATSDKDIFGIKKLYPTKSNGEEWYINMNNPTSDSRFNPQNTI
                     TKNPDGSWKMKSTQVRMNVYTSTGYDGDDIQTLDHSILATKGYMLAPNDWRNFEMTQY
                     VKVNTSPSDDNFSPYGRGGRHTGSGAPQGCEGSSMKGDVFFSGKVRFAKEQWHVSYVF
                     TSLKTATGSIEDKWIGIKFVVYNFVENNKVVVKTELWLDVNNNDNFVKFDENVDRGGW
                     GTEGTECGGAPDQIISWGGPITTFRWDTATDVDFKNLSVREILPPQ"
     gene            4180..>4602
                     /locus_tag="VD694_08385"
     CDS             4180..>4602
                     /locus_tag="VD694_08385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12762.1"
                     /translation="MKIRSFDYLIVLLAYFVISLTTLGEILLSPGTIGFSQDWYIGPY
                     PEMNELWAKNGLYKWDSKIGNKGYDTDWLFKLILLPLPFLGGEVLSKGLLIFIMTFSG
                     FGAFCLGRRLKLGWYVSFATGILYIFSPIIFTRIVAGHL"
BASE COUNT         1524 a          776 c          846 g         1456 t
ORIGIN      
        1 attgcatggt atgccggtaa cgcacgtcag tatcattttg tcatagccac atccactgat
       61 ggaaccacat ttaccaacaa gtttagcggt gacagtagtg gcactacact aaactcataa
      121 aaatacacat ttgctgctac cgatgcaagg tacgtaagga taactgtgaa cggtaacacc
      181 gtaaataact gggcatctat gacggaactt gatgtctatg gtacgtccgc ctcagctaca
      241 tcgtcatcct tgtataacta tggcccgagt ttaatacttt caggacctag tgaatgagtt
      301 cgtatatgaa aaatttacac attcatacat caaatttgcc attcatatca atgggcctgg
      361 gcaggctatc gctcatatta gccagacttt tagcaagctg tcatggttga gaagcaaaac
      421 atgtaagagg ttcttataat atcattaatg aatctggatc tcccacatta ataccttcta
      481 tgaccgaatt aagtagttct ttagatgtca acttcctaac catatactga tgttgtaatt
      541 ccagattgta taagtttgtt aatttgcgcg cttttcctga taattacttc atatttagca
      601 gctatagtac tttcatccct gctaagggaa tttcacaggc atacttgttt tcgtaaatcc
      661 aagaaaaatt tatggagctg aatcaaatac ttttgttacg caaattgatg aatccgcgtt
      721 attgagactt aattcggccg taaacacgtt gctaacgttt cttgtaatga cattcgtaac
      781 tttaaccaaa tcggtgactt cagtatcacc gttatcatta atctccgcta tgcagttttt
      841 gtcatctaga gttactcgat gcgtgtgcca ttgagtatcg ttatctactt catcagtgtc
      901 gtcgtataaa tgggacataa cagcaaaagt accgttatcg gttacaaatg tataggcata
      961 tatggtactc gtattttgtg gtgttgatcc tcctgctttg ccttcaacga ttaaccacgg
     1021 atttccattt atgattccaa agtcctttat ctgaaagtct gcttcgttaa aaatgttttg
     1081 ggcaaatatg ctacttggtc caacaaatag aattgcaatt agcccaatga ttacacctgt
     1141 cggagttttc gatcctatca tggtaaaaat ctacataata gtctgacatg aaccctttat
     1201 aaacacttaa tttataaaat taaaatatta atacgtgagt acttaaaaac attgcattaa
     1261 tactagaaaa aaggacgcaa ttctagcact taagatgaca tgtatttgct aaatgctcaa
     1321 ataaaatcga attttggtct agaagtatcg tcatgcgacg agtgtcaaat tctaatactg
     1381 ttattcacct gtaaaataat gttggaccga gcctagtcta ccatcactat gataataaat
     1441 ggagattgtt actgaaattc ataaatacca agactatgat ttttattatt ttggggctag
     1501 gataaagtat tgtgaaacca aagtgaaaga cgaagtggga tatacatatc gatcctctaa
     1561 aaggctgccg gttcagacga gtatttgctg tatgccgata ctgcatacta caaattatgg
     1621 agtaagaagc ataataattc ttattaatta tactatttaa atagggcttg tacaattgat
     1681 tgtgaatcat attttcgatt tttataataa aaaaattttt actaaatttt tctctgtcgt
     1741 tgccttttgg atactattaa tctcttcatc gtctcaaatt aactttaatt ttatcaataa
     1801 ggcagatgct caatcttgca ctgataatct ccctataagc ggtgtaactg ccagtggtaa
     1861 tgacggtaac gtaccttcaa atgtccttga taacaacttg aacacaagat ggtccagtca
     1921 cggaattggt cagtggattc gcgctgacct tggatctaca aagaacatct gcagtgtaga
     1981 cattgcatgg tatgccggta acgcacgtca gtatcatttt gtcatagcca catccactga
     2041 tggaaccaca tttaccaaca agtttagcgg tgacagtagt ggcactacac taaactcaga
     2101 aaaatacaca tttgctgcta ccgatgcaag gtacgtaagg ataactgtga acggtaacac
     2161 cgtaaataac tgggcatcta tgacggaact tgatgtctat gggtcaagtg ctacttctga
     2221 taaagacata tttggaataa aaaaactcta tccaacaaag agtaacggag aagaatggta
     2281 tatcaacatg aacaatccaa ccagtgatag tagatttaat ccgcaaaaca caattacaaa
     2341 aaatcctgat ggatcgtgga aaatgaagtc aacacaagtg cgaatgaatg tttatacttc
     2401 aacaggatat gatggcgatg acattcaaac cttggaccat agtatattag ccacaaaagg
     2461 ctacatgcta gcgcccaatg attggcgaaa ttttgagatg acacagtatg taaaggtaaa
     2521 tacttctcca agtgatgata atttttcacc atatggtagg ggcggtagac atactggcag
     2581 tggcgcccca caaggatgcg agggttcgtc tatgaaaggt gatgtattct tttcaggaaa
     2641 agtaagattt gcaaaagagc aatggcatgt tagttacgta tttacaagcc taaaaaccgc
     2701 gacaggctca atagaggata aatggatagg aataaagttc gttgtatata attttgtaga
     2761 aaataataaa gtagttgtaa aaacagaact ttggcttgat gtcaacaata atgataactt
     2821 tgtaaaattt gacgagaatg tagatcgagg cggctgggga acagaaggaa ccgaatgcgg
     2881 cggagcacca gaccaaatca taagttgggg tggaccaatt actacattta gatgggacac
     2941 tgcgactgat gttgacttta agaatttaag tgttagagag atactacctc ctcaataatt
     3001 tttatgatgt ttcaaagaat tttcaaatct aatttgattt ttagaatacc attcgaatct
     3061 tgccaaagaa ttagtcccgt atcaataatt gctgatattt atatataata agcaaatatt
     3121 ccaatgtttc gatctttttc tggtatcttg tatttaatct gttagacttg tagtaggctc
     3181 aaaatatcac accacattgc actggttcat tgaatttggt aaggataaga agtcggactt
     3241 tgggtaatat ccaaaagctg tttgtgcaga tgttaaattg ataattctct aaaatatcca
     3301 tatattattc caattacgta aatattcttt ggagatcaat ttagaccaaa tcaatccttt
     3361 tcttttaatt taatttgatt attataccat caaataatag tgttttgcaa ttggaagact
     3421 gcaaagagaa atacttcata tacttccaat tatttgttac ccggagctga aagtaatcaa
     3481 taaagtataa cctaaaatta ttagatagtg caatttctat gtaataactt aatcagaaac
     3541 caaatatttt gaagatcggg atatcaccaa attcaagacg attttggtgt gatacatttg
     3601 attgatgcgt tttgtaaaaa taccgaaaaa tagatgatgg tttagaaaaa gcacctgaga
     3661 tacagaacaa ttatttattt atcaaaaaag tcgtgagttt tcaagtagcg tttattaacc
     3721 aatctggatc atcaggtttg aaaataattg aactgaatag atcaaattaa tgtattgtat
     3781 ctattagaaa cgatataatg ttacttgaca gaggaaaata gtcgaactgc caaataattc
     3841 ttcagtatag agaatcattt tcaaatgatt catcaaaagg aaccaacaac tatattgatg
     3901 gcttcctcag aaccaatcag tcctaatttt acatttccgt aaagattcat cagaaatgct
     3961 aatacatacc agaatggcag aacagcatac ctaggtattg taacagagga tattctctaa
     4021 ttcgtataag aaaacttttt attcgtggaa atctgtcccg ctattgaaga ttaaactgat
     4081 aaacaactgc ccaaaagttt atctaattat cattaataat gtgagtgccc ttagaggttg
     4141 cctaaagtaa tttatgatat gggaaaataa atgtacagat tgaaaataag aagttttgat
     4201 tatttaattg ttttattggc atatttcgta atttccctga cgactttagg ggaaattctt
     4261 ttgtctccgg gtacgatcgg cttctctcag gactggtata tagggccgta tcctgagatg
     4321 aatgaattat gggctaaaaa cggtctttat aaatgggatt ccaaaatagg taacaaaggt
     4381 tatgatacgg attggctttt taagttaatt ttacttccat taccatttct gggaggtgag
     4441 gtactctcca agggactgct aatttttatc atgacattca gcggatttgg agctttttgt
     4501 cttggaagac gactaaaatt aggttggtat gtatcatttg caacagggat tttgtatatt
     4561 ttctcgccta taatctttac aagaattgtg gcaggacacc tg
//
LOCUS       DASPFX010000393         3945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_767528, whole genome shotgun sequence.
ACCESSION   DASPFX010000393 DASPFX010000000
VERSION     DASPFX010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3945
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_767528"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(502..1059)
                     /locus_tag="VD694_08390"
     CDS             complement(502..1059)
                     /locus_tag="VD694_08390"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12763.1"
                     /translation="MNEASLLRQRIYLPVGFRYGALSSSDASHTLQATSLILVPHDGT
                     EMSEKALKKAVEFAQALRAKIILLHIVDDRIVPPSDTIGFVSDEQPSLEVAKMQLIRI
                     LKQGAELMLKDRISKVKQMGIEIQFMMGVGSPAEEIVLISESEHVDLIIMGSRRLNEI
                     FKNVALGSVARRVSEIAKCPVMIIH"
     gene            1277..1765
                     /locus_tag="VD694_08395"
     CDS             1277..1765
                     /locus_tag="VD694_08395"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12764.1"
                     /translation="MTTKIITDTQDQNIFSASKKMDENNIGSVIIVDNEINKMAVGII
                     TERDVVRILGKLEPWLLSTPLSALMSKPLITIRSNGSLRDGIQTMYSKNIRRLPVISD
                     KEKSGKIVGIVTDKDIFRMLMKNQNLVQSLLTDNMMSQNIETIHERFAEYWFGDILIH
                     RK"
     gene            2023..2442
                     /locus_tag="VD694_08400"
     CDS             2023..2442
                     /locus_tag="VD694_08400"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12765.1"
                     /translation="MSLNPTVRVKAAMNRKMITLDKGLSVKSAIKLMVKKNIGSVVVT
                     ADSGHDPVGILTERDILKSIAYRRVRPEVTKIEEIMSTPILSVDQDATLGDAAQLMIK
                     KNIRRLLVKQDNKYVGIITQRDLQKLMTDTIRALLIM"
     gene            2749..2883
                     /locus_tag="VD694_08405"
     CDS             2749..2883
                     /locus_tag="VD694_08405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12766.1"
                     /translation="MSHRKYVGTDILAIALPLAFWYTESIQDYEKKDKRVPRIPCIEQ
                     "
     gene            complement(2959..>3945)
                     /locus_tag="VD694_08410"
     CDS             complement(2959..>3945)
                     /locus_tag="VD694_08410"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HXW12767.1"
                     /translation="PILPQISEAEILINGLGKIDKDVIDNCPRLKLVHQIGAGTDNID
                     IDYCTHKAILVANTPATNNISVAEHTFFLMLFIAKKIKGAGEGLIKGRIQNVLGSELY
                     GKTLLVIGLGATGTEVAKRATMFGMKVIAVTKFLTEPSLSSVLVQSHSDPHQRIPDTP
                     FQAANIESIYKNGDSVNADLNLTFVKEIHGTERLLDLIPVADYVSLHTPLTEETRAMI
                     RSRELHLMKRSAYLINVARAQVVDRDSLYAALLNRDIAGAAFDVFWEEPTDPNDRLLK
                     LDNFMLTPHIAGWTAESVRAEAALIAENLYRLDQGKVLLPLTLLNPDVANIK"
BASE COUNT         1267 a          728 c          781 g         1169 t
ORIGIN      
        1 cgcgagtcta ggatttggag cgccactagg cgaaaaagaa accaagattt tcctagcttt
       61 ggataagtta aacattcatc tcgtgaccgt agatgaaaaa gtagatgcaa atattcatca
      121 cgcatgtatt ttatagtgat ccctcaagga aattatttac attcaaactt cgaagcaggc
      181 aaaataaatg ccaatttcag aaaaggaaga aggatttatt ttgcgcagat gatccaaatt
      241 atccgtataa aggtgtgtgc ggatagggaa tcgtaagaat atatgaacat attgaattta
      301 atgttctcat cgcgaagaaa atagtgatca agtatttgga aaatattgac catccaatgg
      361 ctttggcact tttggataag cagagaaaag gtcattcagt catcttagaa attagttcaa
      421 aatgctactc gaattgggat tataaattga aagatttatt gctaaactga taagttgtac
      481 ttacctgggt ctgaatcata ctcaatgaat aatcatgacg gggcatttgg caatctcaga
      541 gacccttctt gccacactac ctagggcgac atttttgaat atctcattca aacgtcgact
      601 tcccataata ataagatcca catgttcaga ctcagaaata aggacaatct cttccgcagg
      661 tgatccaacc cccatcatga actgaatctc gattcccatt tgtttcacct ttgatatcct
      721 atccttaagc attagttcag caccttgttt cagaattcta ataagttgca ttttcgcaac
      781 ttctaacgaa ggttgttcgt cactcacaaa gcctatcgta tcacttgggg gtacaatcct
      841 atcatctact atatgcagaa gaatgatctt tgcccttagt gcctgggcaa attccactgc
      901 ctttttgaga gccttctctg acatttcagt accgtcgtgg ggaacaagaa tgagggacgt
      961 agcttgtaaa gtgtgagagg catctgatga agacaaagca ccgtatctaa aaccgacagg
     1021 taaataaatg cgttgtcgta acaacgaagc ttcattcaag ttcacatgca gattgagcga
     1081 cttgatgtgg tttagttcga ggcttgtatt gcacttaatt cataatctat ttccaacaat
     1141 gaattctggc ttatatctta gtccactcat ttgattcaga agttgcaata attaagggac
     1201 cgaaagtgag ataggtaagg aattctaata ttggtatagg tccatgagta ttgattcaat
     1261 atctatatcc agctttatga ccacgaaaat tataacagac acacaagacc aaaatatctt
     1321 ttctgcatca aaaaagatgg atgaaaacaa tattggaagt gttattattg tagataatga
     1381 aataaataaa atggcagtag gaatcatcac tgagagagac gtggtacgta ttctgggcaa
     1441 acttgaacca tggctcctta gcactccatt gagcgcgctg atgagcaaac cattgatcac
     1501 catccgctcg aatggttcat tgagagatgg aatccagact atgtattcaa aaaatataag
     1561 aaggttgccg gtcatatctg ataaagaaaa atcaggtaaa attgtgggta tagttactga
     1621 caaagatatt tttagaatgt taatgaagaa tcagaatttg gtacagagct tacttactga
     1681 taatatgatg tcacaaaata tagaaacaat acatgaacga tttgctgaat attggtttgg
     1741 tgatatatta atacacagaa aatagcagat taggatcttt aaccccgtct ctaaaggtat
     1801 aataaagcca gaaggcgtag gattatcaat tcgtaattaa agtcaaagcc caattatgat
     1861 acgttgtagg tacaagctcg aagtcgatcc gagttagtgg tcaattgaca cgtacgaatt
     1921 gcagcattat tgcgcgagca actgcaagat ctatcactat gtcatttttt aatttctaat
     1981 gatagattaa tatagtcaaa atcatgtcaa cctccgtgtc ttatgtccct taatccaaca
     2041 gtaagagtta aggctgcaat gaatagaaaa atgataacct tagataaagg cctctccgtt
     2101 aaatcagcga tcaagcttat ggtaaaaaag aatattggtt ctgttgttgt aacagcagat
     2161 tcgggccatg atcctgttgg aattctaacg gagagagata tactaaagtc tattgcctat
     2221 cgacgcgtaa gacctgaagt tactaaaatt gaagaaataa tgagtacacc tattttgtct
     2281 gtagatcaag atgctacgtt aggggatgca gcacagctga tgataaagaa aaacatccga
     2341 agactcttgg taaagcaaga caacaaatat gtgggaataa taacccaacg tgatttacag
     2401 aagctcatga ctgacacgat cagagctcta cttattatgt aatgtcggag aatattcaac
     2461 cgttaagcca taaaggcagt actggatagc tactaagttt tctgttttaa cagtgtaagc
     2521 attgaaataa tatcatcatg accagatcgc gcggtgcagt ggaagagaca gcgtaattta
     2581 tttgggagtg aaaattatta attggtgtaa tgcaatttta attcttatga caagaattcg
     2641 ttcgccgcat gatttccatg agacgaaaaa gcatgacact gagagtatat gtgcgaaatg
     2701 tggaaagatg acacctaaat tgtgtgattg gtgtggagcg tgtttacaat gtcacaccgg
     2761 aaatacgttg gaacggacat attagcaatt gctctgcctc tcgccttttg gtatactgaa
     2821 agtattcaag attatgaaaa gaaagacaag agggttccca ggataccctg cattgagcaa
     2881 tagtgcttgt caataactta agaattgaat gcttagtatt acccccgtac cacattgtca
     2941 tagcatccag tggagttact acttgatatt ggcaacatct ggattcagaa gtgttaatgg
     3001 gagtaacact ttgccttgat cgagtctgta taagttctct gcgattaatg ccgcttcggc
     3061 tcgtacagat tcagcggtcc atccagcaat gtgtggcgtt aacataaaat tatcaagttt
     3121 tagtaatctg tcattgggat cagtgggctc ctcccaaaat acatcaaaag ccgcaccagc
     3181 aatatctctg tttagtaaag ctgcatacaa agagtcccta tcaactactt gagctcttgc
     3241 aacgttgatg aggtacgcag atcttttcat aagatgtagc tctctagatc taatcattgc
     3301 tcgggtctct tcagtgagcg gagtatgaag cgatacatag tctgctacag gaattaaatc
     3361 caacagcctt tctgtcccat ggatttcttt tacaaatgtc aaattcaagt cggcgttcac
     3421 actgtccccg ttcttataaa tagattcgat attggcagct tgaaatggtg tatctggtat
     3481 cctttgatgt ggatccgagt gtgactgtac taagactgat gacaatgatg gttctgttag
     3541 aaattttgta actgcaatga ccttcatgcc aaacatagtg gctctctttg ctacttccgt
     3601 ccctgtggct cccaatccta tcacaagtag agtcttacca taaagctcgg aacccaaaac
     3661 attttgaatt cttcctttta tcagaccttc tcctgcgccc tttattttct tggcaatgaa
     3721 taacataaga aagaatgtat gctccgctac agaaatatta tttgtagcag gcgtatttgc
     3781 aacaagaatc gccttatgtg tacaataatc aatatcaata ttatctgtac cagcaccaat
     3841 ctgatgtact agttttagtc tagggcaatt gtctattaca tccttatcga tctttcctag
     3901 accatttatc aagatctcag cttctgagat ttgtggcaaa atagg
//
LOCUS       DASPFX010000394         2571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_111514, whole genome shotgun sequence.
ACCESSION   DASPFX010000394 DASPFX010000000
VERSION     DASPFX010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111514"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..492)
                     /locus_tag="VD694_08415"
     CDS             complement(121..492)
                     /locus_tag="VD694_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family ribbon-helix-helix protein"
                     /protein_id="HXW12768.1"
                     /translation="MSVSLNEDIIESLDKLKSLGFSGRSEIIRAGIRNLLSDERMKED
                     LNGEINSLLLAVHDEDSDDQVSSIRHDFDKIIIVHLHNKIDKDRCLEIFSLKGDAKDV
                     KEISRQLQINKRMHFVKLIVV"
     gene            847..1839
                     /locus_tag="VD694_08420"
     CDS             847..1839
                     /locus_tag="VD694_08420"
                     /inference="COORDINATES: protein motif:HMM:NF013465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HXW12769.1"
                     /translation="MGSKNLFLFYLIALVLFSSLSYSLYAQDLSPNTNSTTTLNLESA
                     NKTNGNPIKDAKNVSSSTHKLIVISSILPIDEFVKKVGGDVIESSLIIPPGLEPHDFD
                     PTINQIQTISSADVLVYNGLGIENWLTKIDTPQKIDASNGLNASYSNKRNMTLDPHVW
                     LDPILAKKQVENIRDGLISIDPSNKNTYNSNAGSFLMDLDELDKTIRAQLESCKKKDF
                     ISFHNSFSYFAKRYGITQHSISESGPEAEVTPARLAEIINIARNLDLNVVFSEELMDP
                     RYALVIAQEIPNGKVLVLSPIEGLTKDEQTAGIGYIDKMHEDIKNLSVGLECNQ"
     gene            1827..>2571
                     /locus_tag="VD694_08425"
     CDS             1827..>2571
                     /locus_tag="VD694_08425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HXW12770.1"
                     /translation="MQPIIKVDNLSYYYDSYPSLDHISFSVEKGDFLGIIGPNGAGKT
                     TLFQCMLGIVNNFSGEISLFGSNIRQNKKSLQRIGYVPQKKTVEQTFPATVSEIVSLG
                     VMGRDIKKESIESAIEFVELSGYSNKRIGELSEGQQQRVIIAKALVKQPELLILDEPT
                     TGIDSVTQDKFYDLLTRLNKDKGITIVWSSHDMNAVEKLANKVACIDRKLFFHGESED
                     FFGNEERMRSYVEFAMQSHMNLHFGKSKNK"
BASE COUNT          888 a          422 c          464 g          797 t
ORIGIN      
        1 aacgcgacca tgatcaatca atattcaatt ttggtttatt tggtgaagta tcaaacttga
       61 tataattttt gatgtactgc attgatcgaa gacaggacgt cgcgtcaaaa ttcttttcct
      121 tcatactact atcagtttca caaagtgcat tcttttgttt atctgaagtt gtcttgatat
      181 ctctttaacg tctttagcat caccctttag ggaaaatatt tccaaacatc tgtctttgtc
      241 tattttattg tgaaggtgaa caattattat cttatcgaaa tcatgtctta tggatgaaac
      301 ctgatcatca gaatcttcgt catgtactgc caaaagtaac gaattaattt ctccattcag
      361 atcttctttc attcgttcgt ctgataaaag attcctaatt cccgctctta tgatttctga
      421 tcgtcctgaa aatcccaaag acttgagctt gtccaaactc tcgattatat cttcatttaa
      481 cgagacgctc actatggtca ataagatttt cataatgagt tgttggatat aataattatg
      541 ccatcttgag gtataccgga catattgatt attgctttaa gcagagcttg gaagatagag
      601 ttgagacgct ggaagaatgc tcaaattttg tattcaaatc tatgaaatag tcttgtaata
      661 ggtaacttga aaaatgaaaa tcaattgcaa taaactccat aataacttcg gtacggggaa
      721 actgagtgaa attaggattt gtttttagaa aaaccatgta atacagaaag ccttaataat
      781 aatgcaagat aaattaatta gaattaataa aaaaggtata tattgttaat aacgtattca
      841 ttgtttgtgg ggagcaaaaa tctattctta ttttatttga tagcgctggt attgttctcc
      901 tcattaagtt atagcttgta cgcacaagat ctatccccaa atacaaattc tactacgacc
      961 ttgaatcttg aatcagcgaa taagaccaat ggaaatccaa taaaggacgc gaaaaatgtt
     1021 tcaagctcga cccacaaatt aatagtcatc tcttctatct tgccgattga cgaatttgta
     1081 aagaaagtag gcggtgacgt aatagaatca tcattaatta ttccacctgg attagaacca
     1141 catgattttg atccaacaat aaatcaaatt caaactatca gttcagcaga tgtccttgtt
     1201 tacaacggtt taggaattga aaattggctg actaaaatag acactcctca aaaaattgac
     1261 gcaagtaatg gattgaacgc atcttattct aacaagcgta atatgacatt ggatcctcat
     1321 gtatggctgg atcctatact tgcaaaaaaa caagtggaaa atattcgaga tggcttgatt
     1381 tcaatcgatc ctagtaataa aaatacttac aatagtaacg cggggtcatt tttgatggat
     1441 cttgatgaac ttgacaaaac aattagggca caattggagt cttgcaaaaa gaaagacttt
     1501 atctcatttc ataactcgtt ttcatatttt gccaaaagat atggaataac gcaacacagt
     1561 atttcagaga gtgggccaga ggcagaagtg actcctgcgc gattagcaga aatcataaat
     1621 atagcaagaa atcttgatct aaatgttgtc ttttctgaag aactcatgga tcctcgctac
     1681 gcactagtaa tagctcaaga aattccaaat ggtaaagtcc ttgtcttgag tcctattgaa
     1741 ggactaacaa aagatgaaca aactgctggg attggatata ttgacaaaat gcacgaagat
     1801 atcaagaatt tatctgtggg gttagaatgc aaccaataat caaagtagat aatttgtctt
     1861 actattatga ttcgtaccct tccttggacc atatttcatt ttctgttgaa aaaggtgatt
     1921 ttctgggaat cattggacct aatggagcag gcaaaacgac tctattccag tgtatgcttg
     1981 gaattgtaaa taatttttct ggggaaatta gtctatttgg atccaatatc cgacaaaata
     2041 agaaaagcct tcaaaggatt ggatatgtac ctcaaaaaaa aactgtagaa cagacatttc
     2101 ctgcaactgt aagtgaaatt gtctcacttg gtgtaatggg aagggatatt aaaaaagaat
     2161 ctatcgaaag cgcgattgag tttgtagaac tcagcggata ttcaaacaag cgaataggtg
     2221 aactttctga agggcagcaa cagagggtaa taattgcaaa agcgctcgtc aaacaaccag
     2281 aattattaat attagatgag cctactacag gaatcgattc agtaactcaa gataaatttt
     2341 atgatctctt gacccggcta aacaaggaca agggtataac catagtatgg tcatcacatg
     2401 atatgaatgc tgtagaaaaa ttggcaaata aagttgcttg tatagatagg aaattgttct
     2461 ttcatggaga atcagaagac ttttttggaa atgaagaacg aatgagatcc tatgttgaat
     2521 ttgcaatgca gtcacacatg aatcttcatt ttggtaaatc aaaaaataag c
//
LOCUS       DASPFX010000395         3752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1823080, whole genome shotgun sequence.
ACCESSION   DASPFX010000395 DASPFX010000000
VERSION     DASPFX010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1823080"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VD694_08430"
     CDS             <1..203
                     /locus_tag="VD694_08430"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HXW12771.1"
                     /translation="YKNSVKIRTAVHVGRPEHKIVEFANRQNVDLIVMGSRGLKGISR
                     FVMGSVSKSVSERAKCTVMIVK"
     gene            497..715
                     /locus_tag="VD694_08435"
     CDS             497..715
                     /locus_tag="VD694_08435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12772.1"
                     /translation="MLTSGGYMSDGDDELGEDSNYLDIIHSSSYSYLKKRFKVRRLIC
                     RVCKLKFRTREETQAHIKREHRRIQTET"
     gene            complement(1054..2004)
                     /locus_tag="VD694_08440"
     CDS             complement(1054..2004)
                     /locus_tag="VD694_08440"
                     /inference="COORDINATES: protein motif:HMM:NF018533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HXW12773.1"
                     /translation="MSEGPEVKRTADKIAEAILGKSIVDIQGKAIEHRLREKIVGSKV
                     LAVDTYGKNIIIHFSGDIFLRNHMMMWGKWRIYKRAEYDSGKAKPLPRIIWKRKLRKS
                     KSNSGSIENALVKSKTTESIQNDSRTRLILVTDTHVAVQYNGPILQFTEDNPLHHESI
                     TRLGPDALKSSFNMRKAKDRLIERENMKLADLLLDQTFVAGIGNKYKSEILFLQKLWP
                     FNPASSLSLSKQQRLLKSIRAVLKAGYLNAGRTRSQQKGEPSNKWDYRHWVFRRAGKP
                     CWVCGTKIVMDRQSSSRVTFWCSRCQHPLVSKTSSVKLVL"
     gene            complement(2043..2969)
                     /gene="uvsE"
                     /locus_tag="VD694_08445"
     CDS             complement(2043..2969)
                     /gene="uvsE"
                     /locus_tag="VD694_08445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009650 - UV protection [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UV DNA damage repair endonuclease UvsE"
                     /protein_id="HXW12774.1"
                     /translation="MKIGYPCINNSIPRNAPSTFRLASYSENRLVQTLKSNLVRLNQV
                     LKYNVQNNLLFFRISSDLIPFASHPICKINWRRIFRSEFEEIGDFIKSHNIRVSMHPD
                     QFVILNSPNTKTVENSINELKYHSGILDAMCLDETAKIQIHVGGLYKNKQEAIDRFIR
                     TFNKISKFVDSSIKKRLVIENDDRLYSIMDCLSINQWTGIPIVFDVFHHKLLNNDESL
                     RIALQKAMSTWKMSSDGLPIVDYSIQNSVQGKEKIRKGKHAESIDLTLFEKFLEETQD
                     LDFDIMLEIKDKEKSALKALEVKRTNKYCCCN"
     gene            complement(3111..3461)
                     /locus_tag="VD694_08450"
     CDS             complement(3111..3461)
                     /locus_tag="VD694_08450"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HXW12775.1"
                     /translation="MSSLNNHQVGHFEIPADNVENLKNFYSSLFGWQFERGETQGYYM
                     IKNAGISGALTQKENPQQLSTQFVRVESIEDYISKAKQLGAKVVKDKQEISQGYYAVL
                     EDPQKNSIGIWKDK"
     gene            complement(3484..>3752)
                     /locus_tag="VD694_08455"
     CDS             complement(3484..>3752)
                     /locus_tag="VD694_08455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12776.1"
                     /translation="MKLQVVDKEPNKKLVTRQTEGPFKKWESVQEFQGNGNRTHIRHA
                     IDYELPAAGKIANTLSGSQADNKIKQGLEQAAQTVKEKLESGQV"
BASE COUNT         1108 a          706 c          631 g         1307 t
ORIGIN      
        1 aatacaaaaa ctcggtgaaa attagaacag ctgtacatgt tggtcgaccc gaacataaga
       61 ttgtggagtt tgcaaatagg cagaatgtgg acctcattgt gatgggtagt agaggtctaa
      121 aaggaatttc caggttcgta atgggaagtg tttctaaaag tgtttcagaa agggcaaaat
      181 gtacagttat gatcgtaaaa taatactgtg gaacaatcgg gcatgtttct gtctcctttt
      241 caccttgatt tgttcaacca aagttactaa ggttgcatct tatttaccaa aaaatgagca
      301 tcgacactaa ggtcgtatga tgaatgaaaa cattcttgat aacggagctt tctaccacat
      361 aaatagcaac aataagcgag taattactgt aggatacagg ctaaaacgct aactccataa
      421 actggccaaa accctggctc tagtctcatt atataaattt tacacctggc taaattatat
      481 tggcgactgg gtcattgtgt taactagtgg tggatacatg tccgatggag atgacgaact
      541 aggtgaagat agcaattatt tggatattat ccactcttca tcctatagct accttaagaa
      601 gcgattcaaa gtcagacggc taatttgtcg agtgtgtaaa ttaaaattta gaacacgtga
      661 agaaacccaa gctcacatca agcgtgaaca taggagaatc cagacagaaa cataatgaaa
      721 ttagaaataa aaaaatggtt atgcttaaac actctaacga cagtaatatg gacaaaagca
      781 aatcttaatc ggctttaatg tatggaaagt ctatagtatg actagttttt cttatcaata
      841 tctattagct taactaggca aatattcaat ataaaattca atttcggttt accgacgaaa
      901 aaataaattt agtaaattaa agttattacc acatgaaacg gttggtttca tcagttattc
      961 tttattgctc cagtaggaat agatgcttca gatcttgaga tcttcaacag gctttctctt
     1021 gctttgcagc ccacagatgc aggttatcaa tccttacaga actagtttta cagaactagt
     1081 cttacttacc aaggggtgct gacatcttga gcaccaaaat gtaacacggg agcttgattg
     1141 tctatccata actatttttg taccacatac ccaacatggt ttgcctgctc ttctaaaaac
     1201 ccagtgtctg taatcccatt tattagatgg ttctcctttt tgttgggacc tcgtgcgtcc
     1261 tgcattgaga tatccagcct ttaacaccgc tcgaattgac tttaataacc gctgttgctt
     1321 agataaagaa agactacttg caggattaaa tggccaaagc ttttgtaaaa aaagtatttc
     1381 tgatttgtat ttattaccaa tgcccgcaac aaaggtctga tcaagcagga gatctgctaa
     1441 tttcatattt tctctttcta tcaatctgtc ttttgctttt ctcatattaa aactagattt
     1501 caaagcatca ggaccgagcc ttgtaatgga ttcgtgatgc aagggattat cttctgtaaa
     1561 ttgaagtatc ggaccattat actgaacagc aacatgggta tctgtgacca aaataagtct
     1621 ggttctagaa tcattttgaa tactttcggt tgttttgctt ttaactaggg cattttcaat
     1681 gctgcctgaa ttgcttttgc ttttccgtaa ttttcgtttc caaatgatac gtggcagagg
     1741 ctttgctttt ccactatcat actctgcacg tttgtaaatc ctccattttc cccacatcat
     1801 catatggttg cgcagaaata tatcacctga aaaatggata atgatatttt tgccataagt
     1861 atccacggct aagacttttg atcctactat tttttctctt aatcgatgtt ctatagcttt
     1921 gccctgaatg tctacaatag actttcctaa tatcgcttcg gctattttat ctgcagtacg
     1981 tttcacttct ggtccttcag acatagttta tttcatgact gcaaaataac tggcacttat
     2041 agtcaattac agcaacaata tttgtttgtc cttttaactt ctaaagcctt tagagcactt
     2101 ttttctttat cttttatctc aagcataata tcaaaatcca agtcctgtgt ttcttccagg
     2161 aatttttcaa acaatgtaag gtcaatactt tctgcatgtt tgccttttct tatcttttct
     2221 tttccttgta ctgaattctg gatactgtaa tcaacaattg gaagaccatc actactcatt
     2281 ttccatgtag acatagcctt ctgaagggct attcgcaaag actcgtcatt attcaaaagc
     2341 ttatggtgaa agacatcaaa aacgattggt atacctgtcc attggttaat actaaggcaa
     2401 tccataatac tataaagacg atcgtcattt tctataacta gtcttttttt aattgaacta
     2461 tccacaaatt tgctaatctt attgaatgtt ctaatgaatc tgtcgattgc ctcttgcttg
     2521 tttttgtaaa gccctcctac atgtatttgt atttttgctg tttcatcaag acacattgca
     2581 tctaaaatgc cggaatgata tttcaattca ttaatactat tctctacagt cttagtattc
     2641 ggggaattta ggataacaaa ctggtcagga tgcatggaga cacggatatt gtgcgattta
     2701 atgaaatcac caatttcctc aaattctgac cgaaaaatcc tacgccagtt tattttacag
     2761 attgggtgag aagcaaaagg aataaggtct gagctaattc taaaaaataa taagttgttt
     2821 tgaacattgt attttaagac ttgatttagg cgtaccaaat tactcttaag ggtttgaact
     2881 aatctatttt cagaatatga tgctaatctg aatgtagaag gagcattacg gggaatacta
     2941 ttgttaatac aagggtatcc tattttcatg ataacattta ttcctgaaga gatagctacc
     3001 tgatataatc atcattatgc tagcgcctat cacatgccgt accctagaat tatagacttt
     3061 ttcttggggt tgaaactatg tattcattta gaaaagaaaa aaaggattgg ctacttatct
     3121 ttccaaattc ctatcgagtt tttttgtggg tcttctaata cagcataata accttgggat
     3181 atttcttgtt tatcttttac tactttggcg cctaattgtt ttgctttgct gatataatcc
     3241 tctatagact ctactcgtac aaattgtgtc gataactgct ggggattttc tttctgtgtt
     3301 aatgctccac ttatgccagc attttttatc atatagtatc cctgtgtttc tcctctctca
     3361 aactgccagc caaataatga actatagaag ttcttcaaat tctctacatt atctgctgga
     3421 atctcaaagt gacctacttg gtgattattt aacgaagaca ttattctaaa tcactgatcc
     3481 ccattagact tgaccagact ctaacttttc ttttacagtc tgagcagcct gttctaatcc
     3541 ttgttttatc ttattgtcag cctgacttcc tgaaagagta tttgcaatct tccctgcggc
     3601 tggaagttca taatctattg catgtcgtat atgtgttctg ttcccatttc cttgaaattc
     3661 ctggacactt tcccactttt taaacggtcc ttctgtctgt cttgttacga gttttttatt
     3721 tggttctttg tctacaactt gaagtttcat tt
//
LOCUS       DASPFX010000396         2219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2109370, whole genome shotgun sequence.
ACCESSION   DASPFX010000396 DASPFX010000000
VERSION     DASPFX010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2109370"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /locus_tag="VD694_08460"
     CDS             <1..432
                     /locus_tag="VD694_08460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12777.1"
                     /translation="SDFYRVETRVVSVQPTIKELMAMIEFFIGYLSRAIYEERQLRPL
                     SSLREERLAAVRSGYQAKTHFDIIETIRGQLDYARKGLYDLGISAEFLNILDRRLQNK
                     STPGDDVAKLWDEKFNGSIRQTIFEVISDIWQRTRNNQPIM"
     gene            1716..>2219
                     /locus_tag="VD694_08465"
     CDS             1716..>2219
                     /locus_tag="VD694_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HXW12778.1"
                     /translation="MSILQGTAGGMPVLILKEGASQTKGRDAQKNNIAAAKLIAEVVR
                     SSLGPRGMDKMLVDSLGDVTITNDGATILKEIDVQHPAAKMMVEVAKSVDNEVGDGTT
                     SAVVLAGALIENAEELIGKDVHPTIIVDGYRRSAIKAIEILNNVAIKVHNNDKDQLTK
                     IAKTSMQT"
BASE COUNT          768 a          367 c          429 g          655 t
ORIGIN      
        1 tcagattttt atcgagttga aactagggtg gtatcggtac agccaactat taaagaacta
       61 atggcgatga tagaattctt tattggttat ttgagcagag caatatatga agagagacag
      121 ctgagaccac tatcttcatt aagagaagaa agattagccg cggtgcgatc aggatatcaa
      181 gctaaaaccc attttgacat cattgagacg ataagaggcc aattagatta tgcacgtaaa
      241 ggtctgtatg atttaggtat tagcgcagaa tttctcaata ttttagatag acggttacag
      301 aataaaagta ctcctggtga tgatgttgct aaactatggg atgaaaagtt taatggttct
      361 attaggcaga caattttcga ggttattagt gatatttggc agaggacaag aaacaaccaa
      421 cctatcatgt agtagattgc gattgacaca ttttttgtta taggaattca cctttttcta
      481 tcttaatcct gccatttcga taatcctacc ataatgatag cttctcatat gaatttaggt
      541 aagtaaaagt ttgcgtaata gattaagtca tctattttaa ttcctgcatg cgacaatttg
      601 aaggcattaa gtaactcatt caaaaacagt ccccaaccta taattttgac tttacaaata
      661 tttgtagtct cacaagaaga gaccttactt gaccagcacc ttataagtcc caaagttata
      721 acatcaagca tatatttagg atatatctgg ttgtgtcgca aagaccaaca tgttattatt
      781 attattatta ttattattat tataattgat actatcagct gcatgattca tagctgctaa
      841 ttcaaagaat aaagcaaata tgctactcca aatgaaaatg tagaacagct tgcgattatc
      901 cgctaacgaa tgcatactaa agccgaattc agtacacaag caatgaaatc aaaatatata
      961 cagcaaacta agacttgtat agaagtagct cctccaagtt cagctttgaa tcagtttgaa
     1021 taaataaaac tatttcagct atgccacctt ttgatttctt agatgttccc ggaaagaagg
     1081 tttgggttta tgttaaaaaa ggataactag gagaaacagg atggtataaa atagccatat
     1141 tatatgcagt gattaaggca gagttcatgt gaaattgcaa gatcgcctac cgaagaagaa
     1201 atagtaagat cttatcagta agctaaggaa ttggatctca actttgaggc attatctttt
     1261 gaaaaatcag tttttggatt taacctgtaa aacaaagtca tttggataat gataatagtt
     1321 ttagaccaga taaataatga gtggagaggt tccacgcacc tcccatacat tattggataa
     1381 cgaaaaaaat agaggtaaag attagtttta tcattcccct ttttacctat gatatcacta
     1441 ttagctgtcc taccattact ggtaaatggt gtttgcagta atactggaaa ataccttcag
     1501 ggtctgccat aaaattcact acagcatttt ctccaaatgc aatatccgca tctatattgt
     1561 agggtgcgtt tagttaagag atatatagta gttttctatt agtaaacaaa ctttgaatct
     1621 aaaaatgccc gtttataaca ccaaatgtaa caatactgac agtaagaata ttctgattag
     1681 cgttttgtac aatacttccg aggatttgtg aataaatgtc aattctacaa ggtacagctg
     1741 gtggaatgcc agtcttaata ttgaaagaag gcgctagtca gactaagggt cgtgacgctc
     1801 agaagaataa catagcagca gcaaagctta tagcggaagt agtccgctca agtttaggtc
     1861 cacgaggcat ggacaagatg ctcgtagatt ctcttggtga tgtgactatc acaaatgatg
     1921 gagctacaat tcttaaagaa atcgatgtcc agcatcccgc cgcaaagatg atggtggaag
     1981 tcgcaaagtc agttgataat gaggtgggcg atggtactac atccgcggtc gtccttgcgg
     2041 gagcactgat cgagaatgca gaagagctaa ttggaaagga tgttcatcca accatcatag
     2101 ttgatggtta cagaagaagt gctatcaagg cgattgaaat actcaacaat gttgcaatta
     2161 aagtccacaa taatgataaa gatcaactta caaaaatcgc caagacatca atgcagaca
//
LOCUS       DASPFX010000397         4438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_622269, whole genome shotgun sequence.
ACCESSION   DASPFX010000397 DASPFX010000000
VERSION     DASPFX010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4438
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622269"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..726
                     /locus_tag="VD694_08470"
     CDS             <1..726
                     /locus_tag="VD694_08470"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12779.1"
                     /translation="IGKQVSRSYIESTLNVMAKFGAKVEKSKNFRKYDIAYNKYTPST
                     FTIPGDFSTAALLLSAGTLAGGEVTVTNLDFSLPQGDSKILEILKKIGAVITINKNKG
                     TVKTVGIGDLDGGEFDLSDTPDLLPVVAILSLKSRNPVRIYGVSHTRYKETDRLRIIA
                     SEFRKFGVKTKMHPDEITIVSPKKLKNAHIDSHNDHRLFMSFVIASMMTEKSTVDGLE
                     SVDVSYPSFVKDMKKIGAKFSQS"
     gene            820..1932
                     /gene="aroC"
                     /locus_tag="VD694_08475"
     CDS             820..1932
                     /gene="aroC"
                     /locus_tag="VD694_08475"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HXW12780.1"
                     /translation="MTGNILGEKLTLTSFGESHGRCIGMVLDGCPAGLPLSESDLQIE
                     LDKRKPGQSIITTQRKEEDRVEILAGVFNGYTTSAPICAIIWNKDSDSRPYDVIKNNP
                     RPGHADYPSFIKYGGFADYRGSGRFSGRLTATMVMGGAIAQKLLRYTLGIETIAYTIQ
                     IGKIGYVSSSFQESKLNRYANDVRCPDSQIAEKMRSAIVDAKKDGDSLGGIVESVSVG
                     LPVGLGEPIFSSLESDLSKALFSIPSVKAVEFGSGFSGTKLKGSENNDEYVISDDQKI
                     ITKTNNSGGILGGLSNGMPIVIRIGFKPASSIAKKQKTIDLVSNTECDIIVPGRHDPC
                     VVPRAIPVVESLVSLVLADHAIRWNLIPPALSEEKK"
     gene            1929..3308
                     /locus_tag="VD694_08480"
     CDS             1929..3308
                     /locus_tag="VD694_08480"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HXW12781.1"
                     /translation="MSEEKELELEGLREEMRLVTADIIKLVQKRMEIATQIGNIKNNL
                     MMNIEDISVEQEIARYVHEMGTQTGLNNEFIGRLLNLLFLESIKIQKEKTSKKETKLD
                     HMAMFLKAKQLESEGKKIIHLEVGEPDYMPPVTVKRELLKTFDKKHVHYTQTAGVPLL
                     RKSIASRRSVKEENVIVTPGARFAVFSAMVSSLSIGDEIIIFEPAWPAYRDCANFIGV
                     KVKAIKTTVEQKWDLNLEELERMITSNTKMIVLNSPNNPTGKIIQQKQVDAILKIASK
                     NNIVVLSDEVYSMYSYVPYKSILEFEYDKSIMISSFSKSHAMTGFRVGYAISSKEIID
                     KISKIQAMAITSVAEPMQYAATAALKSNVTNNAKLMKKRLDFIRSKLDCVPCEFISPD
                     GGMYYFIRFKNNISATKVLSDLLREGVAVAPGNGFGEPYVDFIRISACQPIKLLNKGL
                     KILGKVTKV"
     gene            3313..4185
                     /locus_tag="VD694_08485"
     CDS             3313..4185
                     /locus_tag="VD694_08485"
                     /inference="COORDINATES: protein motif:HMM:NF014234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HXW12782.1"
                     /translation="MVKIVAIVGVGKMGLWFCNYFSKKHNYEVLLYDRRKIKLDSSKY
                     HNKVTICKSFQTCVRKADIVVVCVPIKLTIPVINKCVAIMKNHACVVEISSLKSDIFN
                     SLRKIPDHLIPLSIHPMFGPGVKNISDTKMLVIPIRNEKREQRLVKSLFSETRIIVIK
                     DPQTHDAIMAILLGLIYYINLLLVSTLSREDIALLKRVSGTTFYLQKLLFESILTDHS
                     SLITSLLADNKQLLKHLKKYNVESAKLFAMITKNKRMLEIRINQIKKSYTNKRDIRAS
                     YEKMYSIISKMNNE"
     gene            4229..>4438
                     /locus_tag="VD694_08490"
     CDS             4229..>4438
                     /locus_tag="VD694_08490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12783.1"
                     /translation="MMKKIVSDLRCVNNSCKNKGLILESLREAGDECVEGFLSCNTCN
                     SQFPIIQGVPVVLQNFHDYARQRIMT"
BASE COUNT         1595 a          691 c          891 g         1261 t
ORIGIN      
        1 attggaaagc aagtatcaag atcatatatt gaatctacgc ttaatgttat ggccaaattt
       61 ggcgccaaag tagaaaagtc caagaacttt agaaaatatg atattgctta taataaatac
      121 acaccatcta cttttaccat accaggagat ttttctactg cggcattgtt gctgtctgca
      181 ggtacacttg caggtggtga ggttaccgtt actaatttgg acttttcgtt accacagggt
      241 gattcaaaga ttcttgaaat cttgaagaag attggtgcag tgattactat aaacaagaat
      301 aagggaactg taaaaaccgt gggaattgga gatctggatg gtggtgaatt tgatctttct
      361 gacacgccag atttacttcc tgtcgtggcc atcttatcat taaaatcaag aaaccctgtc
      421 aggatatatg gagtttctca tacacgttac aaagaaacag atagattaag aataattgca
      481 tctgaattta gaaaattcgg agttaaaaca aaaatgcatc ctgacgaaat tactattgtt
      541 tcaccaaaaa aactaaagaa tgcacacatt gattcacata atgatcacag actttttatg
      601 agttttgtaa tagcgtctat gatgactgaa aaatccactg tagacggttt ggaatcggtt
      661 gatgtctctt atccctcgtt tgtaaaagac atgaaaaaga ttggcgcaaa attcagtcag
      721 tcatgattct attacatctg attcctaaag ttttggcaat attataaata aagataaagg
      781 caatatatat gacatacaag ggttatcaat atccataaaa tgaccggcaa tatcttgggc
      841 gagaaactaa cattaactag ttttggtgaa agccatggaa gatgcattgg aatggtattg
      901 gatggttgtc ctgctggact tcctctatct gaatcagatc tacagattga attagacaag
      961 cgaaaaccag gacaatcaat aattacaact cagagaaagg aagaagacag agttgaaata
     1021 cttgcaggag tttttaatgg gtatactact tcagctccaa tatgtgcaat aatatggaac
     1081 aaggattcag attccagacc ctacgatgtg ataaagaaca atccaaggcc aggtcatgcg
     1141 gattatccat ctttcataaa atatggaggt tttgcggatt atagaggaag tgggaggttt
     1201 tctggcagat taacggcaac aatggttatg ggaggtgcaa tagcacaaaa gcttttgaga
     1261 tatacgttgg ggatagaaac aattgcatac actattcaga taggtaaaat tggctatgta
     1321 tcttcatcat ttcaggaatc aaaactaaac agatatgcta atgatgtccg ttgccctgat
     1381 tctcaaattg cggaaaaaat gagatctgcc atagtggatg caaagaaaga tggggattca
     1441 cttggcggta ttgtcgaatc tgtatccgta ggattgccag tgggattggg agaaccgata
     1501 ttttcttcat tagaatcgga tctaagcaaa gcattattta gcattccctc ggtaaaagcg
     1561 gtagagtttg gatccggttt ttcaggaaca aagctaaaag gttcagaaaa taacgatgaa
     1621 tatgtaatat ctgacgatca aaagataata accaagacaa acaattcggg cggtatttta
     1681 ggaggtttgt ctaacggaat gccaatagtg ataagaattg gcttcaaacc ggcatcttct
     1741 atagcaaaga agcaaaaaac tatagacttg gtttctaata ctgaatgtga cattatcgtt
     1801 cctggaagac atgatccttg cgttgtacct cgagccatac cggtagtgga atcattggtt
     1861 tcgttggttt tggcagacca tgcgataaga tggaacctaa tcccacctgc tctaagtgaa
     1921 gagaaaaaat gagtgaagaa aaggaactag aattagaagg actccgggaa gagatgcgac
     1981 ttgttactgc agatatcata aaacttgttc agaaaagaat ggagatcgca actcaaatcg
     2041 gaaacattaa gaacaatctc atgatgaaca tagaggatat atccgtcgaa caagagatag
     2101 ccagatatgt acatgaaatg ggaacgcaaa ctggattgaa caatgaattc ataggtaggt
     2161 tattgaattt attattttta gagtcaataa aaattcaaaa ggaaaagacc tctaaaaaag
     2221 aaacaaagct ggatcatatg gctatgtttc tgaaagcaaa acaactcgaa tctgaaggta
     2281 aaaagataat tcacttggag gtcggtgagc ccgattatat gccccccgtt actgtcaaac
     2341 gtgaactatt gaaaactttt gataaaaagc acgttcacta tacgcaaacg gcaggtgttc
     2401 ctctactaag aaagtcaatt gcaagccgaa gatctgtaaa ggaggaaaat gtcatagtaa
     2461 ctccaggtgc aagatttgca gtatttagtg ccatggtttc atcactatca attggcgatg
     2521 aaataatcat ttttgaacct gcatggcctg cttacagaga ttgtgcaaat tttattgggg
     2581 taaaagtcaa ggctatcaag acaacagttg aacaaaaatg ggatctgaat ctggaagagt
     2641 tagaaagaat gataacatca aatactaaga tgatagttct aaactcgccc aataatccaa
     2701 cagggaaaat aattcagcaa aaacaggttg atgcaatctt gaagattgcc agtaaaaata
     2761 acattgttgt tctcagtgac gaagtctatt ccatgtattc ctatgttcca tataagagca
     2821 ttctagaatt tgaatatgat aagagtataa tgatatcatc attttcaaaa agccacgcca
     2881 tgacgggatt tagagttgga tatgcaatat catcaaaaga aataatagac aaaatttcaa
     2941 aaattcaagc aatggcaata accagcgtgg cagaaccaat gcaatatgct gctactgcag
     3001 ctctgaagag taatgttact aataatgcga aattaatgaa aaaacgtctt gattttatca
     3061 gaagtaaact ggactgcgtt ccttgcgaat ttattagtcc agatgggggt atgtattatt
     3121 tcattagatt caaaaataac atcagcgcta caaaggtact ttccgatctc ttaagggagg
     3181 gagttgcagt ggctccgggg aacggatttg gagagccata tgttgatttc attagaattt
     3241 cagcatgcca accgattaaa ttactaaata aaggattaaa aatacttgga aaagtaacga
     3301 aagtgtgata caatggtcaa gatagttgca atagtaggtg ttggaaaaat gggactatgg
     3361 ttctgtaact atttttcaaa aaagcacaat tatgaagtat tgttgtatga taggcggaag
     3421 atcaaattag attcaagtaa gtaccataac aaggtaacta tttgcaaatc gtttcaaact
     3481 tgtgtacgaa aagcggatat tgtagttgtg tgcgttccta tcaaattgac gatacctgta
     3541 attaacaaat gtgtcgcaat aatgaaaaat catgcatgtg tagtagagat atcatcacta
     3601 aaatctgaca tctttaattc tttgcgaaag attccggacc atttaattcc actttctatt
     3661 catccaatgt tcggtcctgg agtaaagaat ataagtgata ccaaaatgtt ggttatacca
     3721 atcaggaatg aaaaaagaga gcaaaggtta gtaaaatcat tatttagtga aactagaata
     3781 attgtgatta aagacccgca aactcatgat gcaattatgg ctatactatt aggattgatt
     3841 tattacataa acttattatt ggttagcact ttgagtaggg aggatattgc gttactaaag
     3901 agggtgtctg gaactacttt ttatttacaa aagcttctct ttgaaagtat actaacagat
     3961 cattcatcac ttataacttc acttctcgca gataacaaac aattattgaa acatctgaaa
     4021 aaatacaatg tagaatcagc aaagttattt gccatgataa ccaagaataa gaggatgctt
     4081 gaaataagaa taaatcagat aaagaagagc tatacaaaca agagagacat tcgagcttcc
     4141 tatgaaaaaa tgtattcaat catatcaaaa atgaataacg aatgagaaat tattcttact
     4201 caatcattta gatttagagt tatcagacat gatgaaaaaa attgtttctg atttacgctg
     4261 tgtaaataat tcatgtaaga acaaaggatt gatattagaa tcgctacgag aagctggaga
     4321 tgaatgcgta gaaggatttc tttcatgcaa tacttgtaac tcacaatttc caataattca
     4381 gggtgttcca gtagtactgc aaaattttca tgactacgct cgacaaagga ttatgacc
//
LOCUS       DASPFX010000398         6387 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1537306, whole genome shotgun sequence.
ACCESSION   DASPFX010000398 DASPFX010000000
VERSION     DASPFX010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6387
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1537306"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(372..518)
                     /locus_tag="VD694_08495"
     CDS             complement(372..518)
                     /locus_tag="VD694_08495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12784.1"
                     /translation="MPEHGEYDQKLKRWFCSYWMTEEEWMDLHHYFPTNKLEDEKEKN
                     NDDL"
     gene            complement(1157..2113)
                     /locus_tag="VD694_08500"
     CDS             complement(1157..2113)
                     /locus_tag="VD694_08500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12785.1"
                     /translation="MQNTNSLRPVDIKARIFISCGQRGGEETELASTIAKMLVQRGFD
                     PYIAVEEQVLKGFTQNILPRLEESEYYLFIDTLREVVTDDQGNHLGHRGSLFSHQELA
                     IATFLDKPVIAFREQGVMGRDGVAGYLQINSIPFDDRQQLPDLVEATIMERGWDPMSR
                     NELILNRIEDEFEDVTYGPNRIPTRFYHVQVLNLNQHNTARNCTVYLHSVRNLQSGQE
                     YSPEPVEMKWKGLRIQNSAIPPGYVREFDGIVFFRQSTETYVGINTFLTDYAGYLTEY
                     MLAEPGSYQLEYVVFCDNFRPTRRRFIVSIGNDMQILSFQNE"
     gene            2441..2605
                     /locus_tag="VD694_08505"
     CDS             2441..2605
                     /locus_tag="VD694_08505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12786.1"
                     /translation="MQSTENTIKEAGLEVIDKDDVYGDLVYLELKKLIGSVHPIGITY
                     PLMIMINVHL"
     gene            complement(2589..2876)
                     /locus_tag="VD694_08510"
     CDS             complement(2589..2876)
                     /locus_tag="VD694_08510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12787.1"
                     /translation="MDFRVPPIPPLCTFKVSLATTSSSDGAEKFSAAITNARDQFEDE
                     LTTQGQMLVDDMRNAFDIESVQSPLNLAYQYAFTGNLSEAKSELQIATSAH"
     gene            complement(2993..3430)
                     /locus_tag="VD694_08515"
     CDS             complement(2993..3430)
                     /locus_tag="VD694_08515"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HXW12788.1"
                     /translation="MPDTIFSQNEKDYLTTQRIARIATASVSSSEDGSRLVQPDVVPV
                     GFDFDGEYIYVSGIDLLKSTKYKNVLKNRNVAVVIDDLKTVDPWDPRGIRIYGDADVV
                     TRQGGYMDQTGHSEHHYIRIRPIKKWSWGIDISLNSISIRGKL"
     gene            complement(3571..3777)
                     /locus_tag="VD694_08520"
     CDS             complement(3571..3777)
                     /locus_tag="VD694_08520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12789.1"
                     /translation="MFANFELSNTQLRLAIGDAGDNYVCGNCGYLLAEKIPRDIKNRL
                     GINTVKCPNCKKVNKVEWYFAASR"
     gene            4053..5051
                     /locus_tag="VD694_08525"
     CDS             4053..5051
                     /locus_tag="VD694_08525"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HXW12790.1"
                     /translation="MIYHGLMVRLTFYGGVNEIGGNKILLEDKDTKVFLDFGKGFSRR
                     AKFFEEYINPRVANGIEDFLTMGLLPDIKGLYRYDLMKMADRKILEPNVDAVLLSHAH
                     SDHADYISFLHEKIPIYMGDTCHLILQAIEERSNRQIEREVLSYKERPANKKNKPIKR
                     KINTFRTGDKLRIGSLEVEPIHVDHSVPGAYGFIIYTSSGPIGYTGDIRLHGTIPQMT
                     IDFIERAKNEKLVALIMEGTRIADDVPREESEELVSKESMKIVSTTNRLVLADFNFKD
                     VDRLRTFLKVAKGNDRKLVVKMNDAYFLKYLSKDPKQLANHTTKNRKSLKRESMHG"
     gene            5048..5257
                     /locus_tag="VD694_08530"
     CDS             5048..5257
                     /locus_tag="VD694_08530"
                     /inference="COORDINATES: protein motif:HMM:NF019159.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HXW12791.1"
                     /translation="MNHFGMNKFQCHCSGHARSKDLLQIIDEINPRELYPIHTEHPEI
                     YKSTVKSVIEIIEGRPFSISTNIDQ"
     gene            5320..5673
                     /locus_tag="VD694_08535"
     CDS             5320..5673
                     /locus_tag="VD694_08535"
                     /inference="COORDINATES: protein motif:HMM:NF033634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLATT domain-containing protein"
                     /protein_id="HXW12792.1"
                     /translation="MGIGASIPIVNVVGLVDQPYSNSLSAIFGGIIVVSTEILQFQKY
                     HEMWLVYKNTKAKLLNEFYCYKYKIGEMYNKDNRDGKFVGRCESILLSEAIDFLGLFN
                     SVNPRPSAQTNESNR"
     gene            complement(5791..6090)
                     /locus_tag="VD694_08540"
     CDS             complement(5791..6090)
                     /locus_tag="VD694_08540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HXW12793.1"
                     /translation="MMEDLVAWADIIGTIAGILVLSSFIPQLMKAYKTKKMFDVSAHL
                     MILIASGMFLWVIYGFIRSDPVIIGTNAAGFALNICLLVLKFRYDKMHSSTVKAE"
BASE COUNT         2032 a         1211 c         1142 g         2002 t
ORIGIN      
        1 ttaattttcc tttcaagagc tactttcatt ttgtttggat ctccatgaga ctcttcaagt
       61 tcgagatcca gtttttcatc ttccaatttc atcttgtcca tcaattcact catgaatcgc
      121 atatccaatg atgtagacgc atgtattaat cttcacaaaa ttatcgtatg actgacagat
      181 taaataaatg gcaatgatag taaatttttt tgttaattgt taccaatcta gcttccaatg
      241 tacggcttga aacatggctt ttcctaataa aggagtaaat actaattacg tataaacgaa
      301 atattgtgta ggtaaagtgt tttttcaaat tttacatgca aatgagtaag aacgtaatac
      361 atttcttgct ctcaaagatc gtcattattt ttttccttct catcttctaa cttatttgta
      421 ggaaaataat ggtgtagatc catccattcc tcttcggtca tccaataact acaaaaccat
      481 ctctttaatt tctgatcata ctctccatgt tcgggcaaaa ttaactacaa aattgtcaga
      541 ttaagggtag tatattactt ttggtggata tttcgatttt aagaatctgt tggcaacgga
      601 atctttctgt aaaaattgca agatcggtga agaattacgc agtaagaata aaaggcctag
      661 tatattaaaa ggttggatta aaaagttgaa aatttgtata atttgatcct tctacttctg
      721 agcctggtgc taacaattgc tttgttcttt ttgctcattc tagatttagg cttagcataa
      781 actacattgt ttaaattgtt tcaaacataa tagatgctac caacatccta atttcaaaga
      841 aaggttagca agcatagaga tatcgttagt tcgatttttg agtgcgaaaa acgattcagt
      901 tggtattgat tcctcacaga taaggtaacc ggctctacaa tggatccggc tctaaaatac
      961 taatatcggt cgcaggatca aaaccgctag tgcgagaatt gcaggacgac ctgcctagga
     1021 tattcgcaca ggtattttca atgaacaaac cgaacaagcc cgtaagaata ttccagctac
     1081 atatctttag caacaaaagg ggggaaagcg tctgaaacct actcaatgaa agatgctgac
     1141 ctcagtcaaa taacatctat tcattttgga agctaagtat ttgcatgtca tttcctatgg
     1201 atactataaa tcgtctcctt gttgggcgga aattatcaca gaacactacg tattccaatt
     1261 gatagctgcc aggttctgca agcatgtact cagttaaata tcctgcgtag tctgttaaga
     1321 acgtgttaat accaacgtaa gtctcagtac tttgtcgaaa gaaaacgata ccatcaaatt
     1381 ccctaacgta tccaggtgga atagctgagt tctgtattct aagacccttc cacttcatct
     1441 caactggttc tggagagtac tcttgaccac tttgaagatt cctcactgaa tgcaggtaaa
     1501 ctgtgcaatt tcttgctgta ttatgttgat ttagatttaa aacctgtaca tgatagaatc
     1561 gtgttggtat cctgttaggt ccatatgtaa catcttcaaa ttcatcttct atcctattaa
     1621 gtatcaattc atttctagac attggatccc aacctctttc cattattgtt gcctcaacca
     1681 aatcaggcaa ctgctgtcga tcgtcaaagg gtattgaatt gatttgtaag taccctgcta
     1741 ctccatcacg acccattaca ccttgttctc taaatgcaat tactggttta tccaagaaag
     1801 ttgctattgc caattcttga tgtgagaata aagagcctct gtgcccaagg tgatttcctt
     1861 gatcatcagt tacaacttct ctgagcgtat cgataaaaag ataatattct gattcttcta
     1921 gcctggggag gatattttga gtgaagccct taagtacctg ttcctcaaca gcgatatatg
     1981 ggtcaaaccc cctctgaacc aacattttcg ctattgtact agctaactca gtctcctctc
     2041 cacctctttg accacagcta atgaaaatcc tagctttgat atctacaggc cttaggctgt
     2101 tagtgttctg catttaggaa attatatgta tagggcgatt taattaattc actgtaaatt
     2161 caattgccac ctaacataac atagaaatgt ttcctaataa gatcgtctag atagatctgt
     2221 aaatattcaa gccataatta actccctaca tgtaacaata tctgtcagac tgtctaatga
     2281 aatttgcatt tattctaata attagacctt tgaaatacat ccagtatact taaaaaacgg
     2341 attactgcta ttatatacgg tttttgtgaa tcatcaagaa attagattta gaatactctt
     2401 tacattatat cagaaatact atggaggcga acgatataat atgcaaagta cagagaatac
     2461 tattaaagaa gctggattgg aagtaatcga taaggatgat gtatatggtg atttagttta
     2521 ccttgagcta aagaagctta ttgggtcagt acatcctata ggcataactt atccattaat
     2581 gattatgatt aatgtgcact tgtagcgatt tgtaactctg actttgcttc agatagattt
     2641 ccagtaaaag cgtattgata agcgagattc aatggagact ggactgattc tatatcgaac
     2701 gcgtttctca tatcatctac tagcatttgt ccttgagtcg taagttcatc ttcaaattga
     2761 tcccttgcat tagtaattgc tgcactaaat ttttcagcac cgtcactgct agaggtagta
     2821 gccaaactaa ctttaaaggt gcaaagtggt ggtataggtg gtactctgaa atccaattgc
     2881 aaccaatccg atagacgccg ctgctgctac tgttaccaac atcatgccta ttatctttga
     2941 gttagtcatt ctaagtctta ctactggaga ccccgtggga acaagggaat ggtcagagtt
     3001 tacccctaat actgattgaa ttcaaggaga tgtctatacc ccagctccat ttctttatag
     3061 gacgtatcct aatgtagtga tgttctgaat gaccagtttg atccatatat ccaccttgcc
     3121 tagtaacaac atccgcatca ccatagatcc taatccctcg cggatcccag ggatcaacag
     3181 tcttgagatc atctatgaca actgcgacat ttcgattctt tagaacattc ttatattttg
     3241 tagatttgag aagatctata ccgcttacat aaatatactc gccatcgaaa tcaaagccaa
     3301 ctggtacaac atctggttgt actagcctgc taccatcttc tgatgatgat actgacgctg
     3361 tggctattct tgcaatacgt tgagtggtga gataatcttt ttcattttga gagaaaatcg
     3421 tgtcaggcat tccctataga cagattgaga tgatgcaaaa taaagatgtc tgtctgctgt
     3481 caggctcact agcttgacct ctaacataat acaatacgaa aaaaactaac gctgtcaaaa
     3541 tatgtagatt gaattaatga caattattat ctagcgtgat gctgcaaaat accattcaac
     3601 tttgttaact ttcttacagt ttggacattt cactgtattt attcccagcc tgttctttat
     3661 gtctcttgga attttttcgg ctagcagata cccgcaattt ccacatacat aattgtcacc
     3721 agcatctcca attgcgagtc ttagctgagt attactcagc tcaaagttag caaacactat
     3781 ttaatttcta atttctaatt tctaatttct tggttcttga aacctattag actatgtcga
     3841 cttcctcaat atcgatcatc gattgccaac tgtgatggga aagggaagac caatacaata
     3901 acacactgca tttattccgc tgtagttaga tctccccccc tttcccttca agtgcctcga
     3961 gggcactgta caactgatgc cgatgagtca gtagatgtgt tctgttctac taataatatc
     4021 agatgaatat accaacacac ttatgatttt cagtgatcta tcatggcctg atggtacgcc
     4081 ttaccttcta tggcggagtg aacgaaatag gcggcaacaa gattctttta gaagacaaag
     4141 ataccaaagt ctttttagat tttggcaagg gcttcagccg aagagccaag ttcttcgagg
     4201 aatacatcaa tccaagggta gcaaacggaa tagaagactt tctcacaatg ggacttttac
     4261 ctgatatcaa aggactttat aggtatgatt tgatgaagat ggctgaccgt aagatattgg
     4321 aacctaatgt agatgcagtc ttactgtcac atgcacattc ggatcatgct gattacattt
     4381 cgtttttgca tgaaaaaatt ccaatataca tgggtgacac atgtcacctc atcttgcagg
     4441 caatagaaga gagatcaaac agacagattg aaagagaggt tctgtcttac aaggaaaggc
     4501 ctgctaataa aaagaacaaa cctatcaagc gaaagataaa tacctttagg actggcgata
     4561 agctacggat tggttcactt gaagtagaac caattcatgt tgaccactct gttccgggag
     4621 catacgggtt tataatatat acatcatcgg gtccgatcgg atatactgga gatatcaggt
     4681 tacatggtac cattccacag atgactatag attttattga aagagcaaaa aatgagaaat
     4741 tggtcgcact cataatggaa ggaaccagaa tcgcagatga tgtgccgagg gaagagtctg
     4801 aggaattagt ttccaaagaa tcaatgaaaa tagtttcaac tacaaataga ttagttctgg
     4861 cagactttaa ttttaaagat gtggacagac ttagaacctt tcttaaagtg gcaaagggta
     4921 atgatcgaaa gcttgtagta aaaatgaatg atgcatattt tcttaaatat ctttcaaaag
     4981 accctaagca gctagcgaac catacaacga agaacaggaa atctctcaag agagaatcaa
     5041 tgcatggatg aatcattttg gaatgaacaa atttcaatgt cactgctctg gacatgcaag
     5101 aagtaaagat ctcttgcaaa ttatagacga gattaatcct cgtgaactat atccaattca
     5161 cactgaacac ccagaaatat acaagagtac tgtcaaaagt gttatagaaa ttattgaagg
     5221 aagacctttt tcaatatcga ctaatatcga ccaataaaca actttgaaaa agattggaaa
     5281 agaactagaa agaaagagta ggtatacacg tatataataa ttggaatagg agcttcaata
     5341 ccaattgtga atgtagtcgg attagtagat cagccttact ccaactcttt atcagcaatt
     5401 tttggaggga taattgttgt ttcaacagaa attctgcaat ttcaaaagta ccatgaaatg
     5461 tggttggtgt ataaaaatac caaagccaaa ctacttaatg agttttactg ctataagtac
     5521 aaaattggtg aaatgtacaa taaggataat cgggatggaa aatttgtggg aagatgtgag
     5581 agtatattat tatcagaggc tatagacttt ttaggccttt ttaactctgt caaccctaga
     5641 ccttcagctc aaacaaatga atcaaacaga tgaacggtgc actaaaccac taatagatat
     5701 tagctgtata tatcagtgtt ctctcttaac atagagcatc catcctacat ccgattattc
     5761 ttgatgtcaa ataccacagc ctgtattgat ttattctgct ttcactgtac tactatgcat
     5821 cttatcatat ctaaatttca atacgagtaa gcaaatattt aatgcaaatc ccgctgcatt
     5881 ggttccaatt atgactggat ctgatctgat aaagccatag ataacccaga gaaacatgcc
     5941 acttgctata agaatcatta gatgagcaga tacatcaaac atctttttag tcttataggc
     6001 tttcattaat tgaggtatga atgatgatag taccaaaata ccggcaatag tacctataat
     6061 gtcagcccat gcaacaagat cttccatcat agctcataga atacgacatt agatataaga
     6121 gaaaatggtt gtgtgggtct gatatgactt attggctctt ttgtcctgta gtccttcttg
     6181 gaattggaga ggattttttg ttccacgcgc cgctactggc aagatttgca aatattaaaa
     6241 aaattaatag ctattcttag ttagtggtgc actttggctg ccactagttg ctacttcgat
     6301 ttcatcaccc taaacttgcg agtcaatatt ttggcagcat tcaatggtag ctcaccattg
     6361 ccacaagcat tggcctgcga tgttgcc
//
LOCUS       DASPFX010000399         2795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_258359, whole genome shotgun sequence.
ACCESSION   DASPFX010000399 DASPFX010000000
VERSION     DASPFX010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258359"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..793
                     /locus_tag="VD694_08545"
     CDS             <1..793
                     /locus_tag="VD694_08545"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HXW12794.1"
                     /translation="RSVFDSESMTSLQIEEKIQELAKLQDEYFTINFDLLRKIQPDLI
                     ISQGICDVCSPHNREMDKVVRFLGYQLDTLTLDPHTVEDVVQNIVDVAKSVGKEDEGL
                     QIKTSLQDRIEHIASTNKDENPKVICLEWLDPFYIAGHWVPQMVELAGGINGISNTGE
                     RSRKIEFSQISHFDPDIVILLPCGFTVDRVLSEYVSLKRNEDWNSLRAVQSDMVFAVD
                     AMSYFSRPSPRVITGIEILAKIFNPKSFANLGVPEKSHSRLMNDV"
     gene            complement(823..1131)
                     /gene="rpsJ"
                     /locus_tag="VD694_08550"
     CDS             complement(823..1131)
                     /gene="rpsJ"
                     /locus_tag="VD694_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HXW12795.1"
                     /translation="MTQEARIKLTSTNLVMLENVCHEIKGIGEKNGIKFRGPHPLPTK
                     KMKVVTRKSPCGQGTNTWDKYELRIHRRVIDLGADDRSIRQLMRLKIPDDVYIEVSLT
                     "
     gene            complement(1141..2457)
                     /gene="tuf"
                     /locus_tag="VD694_08555"
     CDS             complement(1141..2457)
                     /gene="tuf"
                     /locus_tag="VD694_08555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor EF-1 subunit
                     alpha"
                     /protein_id="HXW12796.1"
                     /translation="MSASKKPHMNLVVVGHVDNGKSTIVGHLLVDMGVIDQRTIDSFA
                     KESEETGKGDTFKYAWVLDSIKDERERGITIDLAFQKFETSKYFYTLIDAPGHRDFIK
                     NMITGASEADVAILVVSVKPGETEAATDPGGQAREHAFLSRTLGVGQIVVALNKMDDS
                     GYSEARYNEVKETVEKMLKLVGYNVAKISFIPVSGWKGDNLVKKSENMPWYKGPTLAD
                     TLDLFEPPEKPLGKPLRIPIQDVYSITGVGTVPVGRVETGVLKANQKVIVMPSGVTGE
                     VKSIETHHTQMESAESGDNIGFNLRGVDKKSIKRGDVIGPVDNPPNAAREFEAQIIII
                     HHPTAMAPGYTPVLHAHTAQVAATLSEFVAKIDPKTGGAVEEKPKFLKTGDAAIVRIK
                     PVRPLAIETFKEFPEIGRFALRDMGTTIAAGVVKSIVEKYDPSSKK"
BASE COUNT          799 a          578 c          504 g          914 t
ORIGIN      
        1 aagatcagtc tttgattcag aatcaatgac aagtctgcag atagaagaaa aaattcaaga
       61 actcgcaaaa ttacaagatg aatacttcac aataaacttt gacttgctaa ggaaaataca
      121 gcccgatctc attatatccc aaggaatctg cgatgtgtgt tcacctcaca atagggaaat
      181 ggataaagtc gttcggttct taggttatca attagacacc cttactctag atccgcacac
      241 agttgaagac gtggttcaaa atattgtcga tgtagccaaa agtgttggaa aagaggatga
      301 gggattacaa atcaagacat ctctacagga tagaattgaa cacattgcta gtacgaataa
      361 ggatgaaaat ccaaaggtaa tttgtctgga atggctagat cctttctaca tagcagggca
      421 ttgggttcca caaatggttg agcttgcggg cggtattaat ggaataagta acactggaga
      481 acgatcgcgc aaaatagagt tttcccaaat ttctcatttt gatcctgata tagtgattct
      541 tctaccatgt ggatttaccg ttgacagagt gcttagtgaa tatgtttccc taaaaagaaa
      601 cgaagattgg aactccttaa gagctgtcca aagtgacatg gtttttgcag tagatgccat
      661 gtcttatttt agcagaccta gtccaagagt gattaccggc atagagatac ttgcaaagat
      721 attcaatcca aaatcattcg ctaatttggg tgttcctgaa aagtcccaca gtagattaat
      781 gaatgatgta taaaataata attaaataga aattggatat tgttaagtta aagaaacttc
      841 aatgtaaacg tcgtctggga tttttaatcg cattaattgt ctaatagatc tatcatctgc
      901 acctaaatca atgacacgtc tgtgaatccg caattcgtat ttatcccagg tattagttcc
      961 ttgcccgcaa ggagattttc ttgtaacgac tttcattttt ttagttggaa gtggatgggg
     1021 tcctctaaac ttgatcccat ttttctcgcc aatgcccttt atttcatggc atacattttc
     1081 tagcatgaca agattggtac ttgttaactt gattcgggct tcctgagtca ttaatacgac
     1141 tcactttttg gagcttgggt cgtatttttc cacaatagac ttgacgacgc cagctgctat
     1201 tgttgttccc atatctctta acgcaaacct accaatttct ggaaattcct tgaatgtttc
     1261 tattgccaat ggtcttacag gtttgattct cacgattgct gcgtcaccag tctttagaaa
     1321 ctttggtttt tcttctacag caccacctgt ttttggatca attttagcta caaattcaga
     1381 caatgtagct gcaacctgtg cagtatgagc atgaagcact ggagtatacc cgggcgccat
     1441 tgctgtagga tgatggataa taattatttg cgcctcaaat tcccttgcag cgttcggtgg
     1501 attatcaaca ggtccaatca catctcctcg cttgattgat tttttatcaa cacccctaag
     1561 gttaaatcca atattatcac cagattctgc agattccatt tgggtgtgat gagtctcaat
     1621 tgattttact tcaccagtca cgcccgatgg cattacaatg accttttggt tggccttaag
     1681 aactcctgtt tcaactctac ctactggcac tgtaccaact cctgtgatgg aataaacatc
     1741 ttgtattggt attctaagtg gctttcctaa tggtttttct ggaggctcaa acagatcaag
     1801 tgtatcagct agagtaggtc ccttatacca cggcatattt tctgatttct tgaccaagtt
     1861 atctcctttc catccagaaa cgggtatgaa gcttattttt gcaacattat agcctactaa
     1921 ctttaacatt ttttcgacgg tttcctttac ttcgttataa cgtgcttcgg agtatccgga
     1981 atcatccatt ttatttaagg caacgacaat ttgaccaact ccgagtgtcc ttgacaaaaa
     2041 tgcgtgttcc cttgcctggc caccaggatc agtagcagcc tccgtctcac ctggcttgac
     2101 agataccaca agaatagcga catctgcttc tgatgcccca gtaatcatat tcttaataaa
     2161 atctctgtgt ccgggtgcat caatcaaggt gtaaaaatat ttagaagttt caaacttctg
     2221 aaatgctaga tctattgtaa ttcctctttc tcgttcgtcc tttatgctat ctagtaccca
     2281 tgcgtatttg aaagtatcac cttttccagt ttcttctgat tccttggcaa acgaatctat
     2341 agttctttga tcgattactc ccatatctac taacaaatga cctacaatag tcgatttacc
     2401 attatcaaca tgtcccacta ctacaagatt catgtgtggt ttcttacttg cgctcattag
     2461 attaaaagcg ataatagggc tttatttgta tttcgttaaa tacagagcta caaatcctag
     2521 gaattctgta ccgtcggtta ctagtcgaga tactaggtag cagctaactg cgttattaat
     2581 ttctaaatcc ggtcataatc gtcttcaatc cttactatat cgtcttcatc aaagcttcca
     2641 tatgatattt ccaaaaccgt acaaccagaa ttgctagctt gaattctgtg cttcgctcca
     2701 gatggaataa tgatattatc accttcagtc agagttaatt tcttgtcttg aacttctacg
     2761 gtgccagaac ctttaattat tttccaaaat tactt
//
LOCUS       DASPFX010000400         8716 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_401732, whole genome shotgun sequence.
ACCESSION   DASPFX010000400 DASPFX010000000
VERSION     DASPFX010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8716
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401732"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1531)
                     /locus_tag="VD694_08560"
     CDS             complement(<1..1531)
                     /locus_tag="VD694_08560"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HXW12797.1"
                     /translation="MYDRVQDENRNQNIVAAILNNIPSESEITKIEYEGPFIVLYSRK
                     PSVLLENQEIISKMVNSIKKRIVIRTDTSIRSSEESANQTIRSSCSNPSNIPEIRFDP
                     ALGEVTVFVNDFRTLTELNQLETLLVEKTGWKLMCRRAPKNLTLLKYMNEILHSSSED
                     RINFYKRVGEKIFRQKLSGSEEASIVCLGGFSEIGRSAILVVTHESKIILDFGIKTYK
                     DQDTDLLPRLDIYGIGMNEIDAVIISHAHLDHCGAVPILCKYGYDGPVYCTEPTFPMM
                     VSILQDYVSRSKKPLYSARDIENLISHVIPLNFGAVTDISPDVRITFANSGHMIGSAS
                     THLHIGNGDYNIVYTGDLKFGRLNTVDNAFWNFPRVETLIIESTNGNRDDKFVTRDVA
                     EENLAKSINSTIQEGGRLLIPVPVLGLSQEICVTLGMLRSVNMINPDKIFVDEKILDM
                     FNFYEMYPDYLSKPLKQRISDQIEDPLFINSLVKLEPSVNWEKSIILCPSSMLTDGPS
                     VK"
     gene            1749..2807
                     /locus_tag="VD694_08565"
     CDS             1749..2807
                     /locus_tag="VD694_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-1-phosphate dehydrogenase"
                     /protein_id="HXW12798.1"
                     /translation="MTSDPNHLMELPRKILIGNDVIHQLGSFIRDLNDKAAIVVVISG
                     NTVRARVGKECVQALDNSSLKHKWIETPNASMNDINSSQSIIEKQQPNFIIGLGGGRS
                     VDVAKMISFNLNIPFISVPTSASHDGISSPFVSIRGRDKPYSLKAHAPIGVLADTRLI
                     SEAPYRLQASGCGDLIGKITAVKDWELARDDNDEYFGSYAANLANMSAKIIIENSNRL
                     GNRAHIRTIVEALISAGVASCIAGSSRPCSGSEHLFSHALEYVSNSNCGLHGERVGIG
                     TIIMSKIHGLDHEIIIKTLENIGAPTTAKEIDVVEEQIIKSLLIAQSLRPERYTILNK
                     TKMDKDSARAVAKSVSVI"
     gene            complement(2857..3615)
                     /locus_tag="VD694_08570"
     CDS             complement(2857..3615)
                     /locus_tag="VD694_08570"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HXW12799.1"
                     /translation="MEKGSLILIDYTAKVKDSDEIFETTVEENAKKSNLYDPGVKYEP
                     RLVSIGEGWVLKGLDEILTTAKIGDNLNVDIPPEKAFGTRDPNKVRMIPQRKFGDKAD
                     EIKAGDVVDIDDRRGFVRFIGSGRVQVDFNHRLAGKTLNYDVHILKILKTDEEKASSL
                     VKRRLFVEGDKIAISFVKPELVITLPEEAFLIDGLQIIKKAVSADLFKFIPTIESVKF
                     LEIYNNSKPASKAKEEPKAKEEPKAKEEPRTQKK"
     gene            complement(3669..4808)
                     /locus_tag="VD694_08575"
     CDS             complement(3669..4808)
                     /locus_tag="VD694_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HXW12800.1"
                     /translation="MEYLVMLPGPTNVPNRVINAMLTPMINHRSEDFRKLYKDIVNKT
                     QTVFETQNDIVVLTTSGTGAVETSVLNLIKKDDSIIIPVNGEFSTRLADLIDNYGGKT
                     IRINSPYGQNPPIEKIEEAFEKNSNIKALYVVYNETSTGTTLRNLSKLGDLCKAHGAF
                     FVVDAVSILGGDELPVDKWNVDICFTATQKALAAPPGIAPISVSKEAKKYMIENPPPS
                     QYLNLKRYFKYYNESFETPFTPAISLFYAYQEALNIIIEEGMQNRINRHKKCANAFYS
                     GLEALGFTPFADANSRSNVVIAVNYLPGIDDKKFRELISTKFKVLLAGGFGELKGKVF
                     RVGCMGEVSSYHVMRTLSAISSSMSILGVQPIKDGLSVANNILNQ"
     gene            complement(5435..5632)
                     /locus_tag="VD694_08580"
     CDS             complement(5435..5632)
                     /locus_tag="VD694_08580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12801.1"
                     /translation="MLRYIDNGKDDDDNVNWKEFKDSKIFKQEDIETQQCIENRQDLS
                     NKLADYEVLRYFENSNYAYDN"
     gene            complement(5616..5771)
                     /locus_tag="VD694_08585"
     CDS             complement(5616..5771)
                     /locus_tag="VD694_08585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12802.1"
                     /translation="MNKKQPMGTIFLLWSFMGMMLAALIVATAGQVYAKNIWDDDNTM
                     EELVKVY"
     gene            6283..7359
                     /locus_tag="VD694_08590"
     CDS             6283..7359
                     /locus_tag="VD694_08590"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HXW12803.1"
                     /translation="MFKERARNIINSLSNEANALMVFKPENIFYLTGFWGESIALCTH
                     DGIKLFVPKLERSRAANESKDSEIITAERGSGLMKSVIPNLPKYKFYSDCSNYETVQS
                     ILPHTDNSSFVINEDPFRKARIIKDDSEIERIRRASDIIDKLYQVCSEEIKKGMTEKQ
                     LQAKLLYEAMELEGTSTCYPFTLNPFIVAGGANSALPHFETSKREFADGDFIVVDLTI
                     RYDGYISDATRTFALGNVSSEMSQVYDIVKKSQQQGLECVEQGVECGKVDSACRTLIS
                     KYGYGDNFIHSTGHGVGLEVHEQPWIRPNESKKLSKSMVITVEPGIYMDTKFGIRIED
                     TVLVNENINTNPILTKFSKELLIL"
     gene            complement(7374..8669)
                     /gene="coaBC"
                     /locus_tag="VD694_08595"
     CDS             complement(7374..8669)
                     /gene="coaBC"
                     /locus_tag="VD694_08595"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HXW12804.1"
                     /translation="MNNSNENSQNKKHISKEIIGMQSNILKGKKIVLCITASVAAYKA
                     IDLSRTLMRNGAEVFPVMSKATNSKLLTEEMMNWATGNKTVSELTSDLEHIVLANYDK
                     SDIILVYPCTANTLGKFANGIEDNPVTTVLSVAFGSGIPIVIAPAMHEAMYENVIIME
                     NIKKLKSLGVSILEPSITEDKAKVISADKVVQFVINKITAQKAKIKSKINALVTAGST
                     VEYIDSIRILTNLSSGKMGLNIAQECLDKGFNVTFVYGHGSLNVPDDPRMKIIKIKTT
                     EEMLKTVKDRILDEKQDVVFHTAAVADFSIAHSNKKVPNKLDTRNGTKTIKLIPTPKI
                     VDKIKKYDKNVFLVAFKAEYGISKELLIKRAIDKLYECKGNLIVANDVSKKGCDFGSD
                     TNEVYVIDKEGNTIHIPLQPKKDIASELIEIVCRKLNLY"
BASE COUNT         2686 a         1622 c         1460 g         2948 t
ORIGIN      
        1 atttaactga gggtccatct gtaagcattg aagatggaca taatattatt gatttctccc
       61 aattaacgga tggctctaat ttcaccaaac tgttaataaa aagaggatct tcaatttgat
      121 cacttattct ctgtttgagt ggttttgaca aatagtccgg atacatctca tagaagttaa
      181 acatatccag tattttttcg tcgacaaaaa tcttgtcagg atttatcatg ttgacacttc
      241 ttaacattcc caatgtaaca caaatttcct gtgaaagccc aagaactgga actggaatca
      301 acaatcttcc accttcttga atagttgagt tgatactttt ggccaagttt tcttctgcta
      361 cgtctctagt aacaaattta tcatctctat tcccatttgt gctttctatt atcagtgttt
      421 ctactctggg gaaattccag aatgcattat ctacagtgtt caatcttcca aattttagat
      481 ctccagtata tacaatattg taatctccat ttccaatatg caggtgagtg gatgcagaac
      541 caatcatgtg tcctgaattc gcaaaggtta ttctaacgtc tggagaaata tccgtcactg
      601 caccaaaatt tagaggtatt acatgagaaa ttagattctc tatatctctt gctgaatata
      661 atggtttttt ggaccttgaa acataatcct gcaatatcga taccatcatt ggaaaagtcg
      721 gttctgtgca atacacaggg ccatcatatc catatttgca caagattgga acggctccgc
      781 agtgatcaag atgtgcatgt gagataatta ctgcatcaat ttcattcatc ccaatcccat
      841 aaatatctag tcgtggaagt agatctgtat cttgatcttt atacgtcttg attccaaaat
      901 ccaatataat cttactttca tgggtaacga ctaatatagc acttcttcca atttctgaaa
      961 agccgcctaa acaaactata ctcgcttctt cagatccgga cagcttttgt ctaaatattt
     1021 tttcaccaac tcgtttgtaa aaatttattc tatcttcgga tgagctatgc aatatttcat
     1081 tcatatattt tagaagtgtc aaattctttg gagctcgtct acacatcaac ttccaacctg
     1141 tcttttctac caaaagagtt tctagttgat tgagttctgt taaagttcta aaatcattga
     1201 caaaaacagt aacctctcct aaggcaggat caaaacgtat ctctgggatg ttacttgggt
     1261 tggaacagct agaacgaata gtttgattag cggattcctc agaagatcta attgaagtat
     1321 cagttcttat aactattctt ttctttattg aattaaccat cttagaaata atttcttgat
     1381 tctccaaaag tacagatggt tttcttgagt aaagtacaat aaatggacct tcatattcta
     1441 tttttgttat ttcagattct gatggaatgt tatttagaat agcagctaca atgttttgat
     1501 ttcgattttc atcctgtact ctatcataca tgtcaatatt tcactaaact atattctctt
     1561 catttagaag tttgtatatt gagatgtagc acgagctaaa taaaggttct caaaccatct
     1621 tctccagctg gcaaaactac acgatatcca actaattgca attttgacct tccatttctt
     1681 tcacgatctt taacacttac aaagcgatag aaataaaatg aaatacaaca attgtatatc
     1741 aagacgaatt gacatcggac ccaaaccact taatggaact cccaagaaaa atactgattg
     1801 gtaacgatgt aatacaccaa cttggatcgt ttatccgaga cttaaatgac aaagcagcaa
     1861 tagttgtcgt catttctgga aatacggtaa gagcacgagt aggtaaagaa tgtgttcaag
     1921 ctctggataa ctcttctctg aaacacaagt ggatagagac tccaaacgct tcgatgaatg
     1981 acatcaactc atctcaatca attatagaaa aacaacaacc caattttatc atcggattgg
     2041 gaggtggtag gtcggtagat gtcgcaaaaa tgatttcttt taatctaaat attccgttca
     2101 taagtgtccc gacttcggct tcccatgatg gaatttcaag cccatttgtt tctattagag
     2161 gtagggataa accctattcg ctcaaagctc atgcgccaat tggtgtgttg gcagatacaa
     2221 gacttatttc agaagcgcct tatagactgc aagctagtgg ttgtggagac ctgatcggaa
     2281 aaatcacagc tgtaaaggat tgggaattgg ctagagatga taatgatgag tactttggta
     2341 gctacgctgc caatcttgct aacatgagtg caaaaataat tattgaaaat tcgaatagac
     2401 tgggaaatcg agcacacatc agaacgattg ttgaggcgtt aataagtgcg ggagttgcgt
     2461 catgtatcgc tggaagtagc agaccatgtt ctggatcaga acatctgttt agtcatgcat
     2521 tagaatatgt ttcaaatagt aattgtggct tgcatggcga aagagtcgga ataggtacga
     2581 taatcatgtc aaaaattcat ggtctggatc atgagataat aataaagacg ctagaaaata
     2641 tcggcgctcc aactactgcg aaggaaattg acgtagttga agaacaaatc ataaaatcat
     2701 tattgatagc ccaatctctt agacccgaaa ggtatacgat tcttaacaaa actaagatgg
     2761 ataaggactc tgccagagcc gttgcaaagt cagttagcgt aatttagatg ttaattaaaa
     2821 gttggaaaaa ccgtaaccag atagcatcaa aagattctat ttcttttgag ttctgggttc
     2881 ttccttggct tttggttctt ccttggcttt tggttcttcc ttggctttcg acgccggttt
     2941 agagttattg taaatctcta agaattttac gctttcaatg gttggtatga acttaaataa
     3001 atcagcagat actgcctttt ttataatttg aagcccatca atcaaaaaag cctcctctgg
     3061 caaagtaatt acgagttctg gtttgacaaa tgatattgca atcttgtctc cttccacaaa
     3121 aagtctcctt ttgacaagtg acgatgcttt ctcttcgtca gtttttaaga tttttaggat
     3181 atggacatcg taattcagtg tttttccggc taacctatgg ttaaagtcaa cctgaacccg
     3241 tccagaaccg ataaacctta cgaatcctct tctatcatct atatcaacca catctccagc
     3301 ctttatttca tcggccttat caccaaattt cctctgcggt atcattctaa ccttattggg
     3361 atctctcgtc ccaaatgcct tttcgggcgg aatatcgaca ttcaaattat caccaatttt
     3421 tgcagtagtt agaatttcat cgagtccttt taacacccat ccttctccta tcgaaactag
     3481 tcgaggttca tatttaacgc caggatcata cagattagat tttttcgcgt tttcttctac
     3541 ggtagtctca aaaatttcgt ctgaatcctt tactttagca gtatagtcta taagaatgag
     3601 tgatcctttt tccattgtca cgaaatttgc tgtcggttta ccataatatt aagcttaaca
     3661 acttgaacct attgattcag gatattattg gctaccgaca atccgtcttt tattggctgc
     3721 acgccaagta ttgacattga tgatgatatg gcagaaagag ttctcataac gtggtaacta
     3781 cttacttcgc ccatgcaccc tactctaaaa acctttccct taagttcccc aaatccacca
     3841 gctaatagaa ctttaaattt ggttgaaatt aattcgcgaa actttttgtc atcaatgcca
     3901 ggcagataat ttacggctat tacgacattg cttctagaat tagcatcggc gaacggtgta
     3961 aatcccaacg cttccaatcc agagtagaat gcattagcac attttttatg tcgattgatt
     4021 ctattctgca ttccctcttc gataatgata tttaatgcct cttggtacgc ataaaaaaga
     4081 cttattgcag gggtgaaagg agtttcaaaa ctttcgttat aatatttgaa gtatcttttc
     4141 aaattcaaat attgacttgg aggaggattt tcaatcatgt atttttttgc ttccttgctc
     4201 acagatatcg gagcaattcc gggaggtgct gccagggctt tctgagttgc tgtgaagcat
     4261 atatctacat tccatttgtc aacaggcaat tcatcgccac caagaattga tactgcatcc
     4321 actacaaaaa aagccccatg tgccttgcat aaatcgccta gttttgataa atttctcaga
     4381 gtagtacctg tagatgtctc gttataaact acatagagag ctttgatatt agaatttttt
     4441 tcaaatgcct cttctatttt ttctatcggc gggttctgtc catacggtga gtttattcta
     4501 atggtctttc ctccataatt atctattaga tctgccagtc tagtactaaa ttctccattt
     4561 acaggtataa ttatagagtc atctttttta atcagattta aaactgaagt ttcaaccgca
     4621 ccagtgccag aagttgtgag cactacgata tcattttgcg tctcaaatac tgtctgtgtc
     4681 ttatttacta tgtctttgta taattttcta aaatcttcac ttctatgatt tatcatggga
     4741 gttaacattg cattaataac tctattagga acatttgttg gacccggaag cattacgaga
     4801 tattccaatt acatccatca gaagaatata gccaatattt ataattacgt aaaaatttga
     4861 aatgagtcat aaatatttta atttgaatcg tttaataccc ttgatttgat aaaacttaag
     4921 ataggaaatt acaagttcta gatctgtatt ttactcggtt gcttgtactg ttgaaataat
     4981 atggactttt agatcgtatg aaataagagt ggtttaagag atcccacttc aatagtatta
     5041 tacgaccctg aaatagacta cattacatga gacatctttc tctcactttc gtttgattac
     5101 tgcgtaaata agtgcccttt gctatttccc attctaatgc aattagtaat gatggtacag
     5161 ttcgactcaa aatatgagtt aaacaagcag aaatttaaga ttctactcat gaatagagga
     5221 caacttccct caatcccgtc ctcaaattaa actagtatga aattccagat gattcccatc
     5281 gaacctgaat tatttgatac caacattagt aattgtaatt aagactggaa tttatttcat
     5341 attctgtata tagtaacata ttttgtttaa ataatttcgg gaaaattttt aggagagtaa
     5401 gaaagaaaaa tgaaaagcgt cccatttgca gattctagtt atcgtatgca taatttgaat
     5461 tttcaaaata tcgaagtact tcataatctg ctagtttatt tgaaagatcc tgtctatttt
     5521 ctatgcattg ctgcgtttca atatcttctt gtttgaagat ttttgaatcc ttaaattcct
     5581 tccaattcac attatcatca tcatccttac cattgtcaat ataccttaac aagttcctcc
     5641 atagtgttat catcatccca gatattcttg gcatacactt gaccagcagt ggcaactatt
     5701 aaagctgcca acatcattcc catgaatgac cacaacagaa agatagttcc cattggttgt
     5761 ttcttgttca tggggatgcg tcatttcctt gatgtattta agttcaactt atttaagttc
     5821 attaacatat atctgattac tatatgaagg atctctagtt gaaagagtgt aatttatgaa
     5881 gattacaggt tatcataatt ggtgttgata cgaggtcgta ggttcgccaa tctttgtatt
     5941 tacatccttt cagtaaattg attggtgccg atgaaagaaa aaaaggcacc aaccatatca
     6001 tccgtgcaag tcggatgata accaatttcg tagaatattt atttaaaaac tcgtcataag
     6061 taagtaattt ttcttataac tggttattac ttttcataag atggcagatg gtaaacatag
     6121 atacttgtac cggaaatctt taagaattta ttattcacta actcggcaat attgaactaa
     6181 tttgttaaac tatagtagtt ggtgctctta tctcactgat aggcacaatc aattgttata
     6241 tcgttaaaac atatatacta agactatgat ttgcattaaa ttatgtttaa ggagcgtgca
     6301 agaaatatca ttaatagttt aagtaatgaa gctaacgcat taatggtatt caagccagaa
     6361 aatattttct atctaactgg tttttggggt gaatcaatag ccttatgcac ccatgacgga
     6421 attaaattat ttgttcccaa actagaaaga tccagggcag cgaatgaatc taaagactcg
     6481 gaaatcataa ccgctgaacg tggatctgga ctcatgaaat ccgtcatacc caacttacca
     6541 aaatataaat tctattctga ttgcagcaac tatgaaacag ttcaatctat tttaccacat
     6601 acagataaca gtagctttgt cataaatgaa gatccatttc gtaaagcaag aattatcaaa
     6661 gatgactctg aaattgagag gatcaggaga gcatcagaca taattgacaa actataccaa
     6721 gtatgtagtg aggaaataaa gaaaggcatg acggaaaaac aacttcaggc aaagttacta
     6781 tatgaagcta tggaacttga aggaacctca acatgctatc cctttacttt gaatccattc
     6841 atagttgctg gtggggccaa tagcgcttta cctcatttcg aaacttcaaa gagagaattt
     6901 gctgatggag acttcatagt tgttgactta accataaggt atgatggata tatttccgac
     6961 gcaacccgta cgttcgcact tggcaatgtt agtagtgaaa tgagtcaagt gtatgacatt
     7021 gtcaagaaat cacaacagca gggattggaa tgtgtagagc aaggggtcga atgtgggaaa
     7081 gtagactctg cctgtcgcac tttgatctca aaatacggtt atggggataa ttttatccat
     7141 tcgacaggac atggagtagg cttggaagtt cacgaacaac catggatacg tccaaatgaa
     7201 tcaaagaaat tatctaaaag tatggttata actgttgaac caggaatcta catggatacg
     7261 aagtttggta tcaggattga agacacagtc ctagttaatg aaaatatcaa taccaatcca
     7321 attcttacga aattttccaa agaattactg attttgtaac caaagctaat caatcagtag
     7381 agatttagct ttctacaaac aatctctatt aattcactgg ctatatcctt ctttggttgc
     7441 agtggaatat ggattgtgtt tccttcttta tctatcacat aaacttcatt tgtatcggat
     7501 ccaaaatcac atcctttttt tgagacatca ttggctacta ttagattacc cttacactca
     7561 taaagtttgt caattgccct ttttattagc agttcttttg aaattccata ttcagctttg
     7621 aaggctacca gaaaaacatt tttgtcatat ttttttattt tatctacaat ttttggggta
     7681 gggataagtt taatagtttt agtcccattt cgagtatcca gtttattagg tactttcttg
     7741 ttactgtgtg ctattgaaaa atctgcgact gcggcagtat gaaaaacaac atcttgtttt
     7801 tcatccaaga ttcgatcttt cacagttttt aacatttctt cagtggtctt gattttaata
     7861 attttcattc ttggatcatc tgggacattc aaagatccat gaccataaac aaaagttacg
     7921 ttaaatcctt tatccagaca ttcctgtgca atattcagtc ccattttccc agaactcaag
     7981 ttggttagaa ttctgattga atcaatatat tcaacagtcg aacccgccgt cactaaggca
     8041 tttattttag actttatttt tgccttctgc gctgtaattt tattaattac aaattgtact
     8101 accttatcag ctgagattac ttttgcttta tcttctgtaa ttgagggctc taatatggat
     8161 actcctaatg actttaattt cttaatattt tccatgataa tgacattttc atacattgcc
     8221 tcatgcattg caggagcaat tacaataggt attcctgatc caaatgctac actcaataca
     8281 gttgttactg gattatcttc tattccgttt gcaaattttc ccaaagtgtt ggcagtacag
     8341 ggatacacaa gtataatatc tgatttgtcg taattggcaa gaacaatatg ttccaggtct
     8401 gatgttagtt cagatacagt tttgtttcca gtggcccaat tcatcatttc ctcagttagt
     8461 aacttggagt tggttgcctt tgacataacc ggaaatactt cggctccatt acgcatcaac
     8521 gtcctactga gatctattgc tttgtaggca gctacactgg ctgtaataca gagcacaatt
     8581 ttctttcctt ttagaatatt gctttgcata ccaataattt cctttgatat atgtttctta
     8641 ttttgagaat tctcattcga attattcata tcaaaccctt tttagcattt tttccagttt
     8701 tgcaaattct tcctcc
//
LOCUS       DASPFX010000401         3175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_406272, whole genome shotgun sequence.
ACCESSION   DASPFX010000401 DASPFX010000000
VERSION     DASPFX010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406272"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1635)
                     /gene="ilvB"
                     /locus_tag="VD694_08600"
     CDS             complement(<1..1635)
                     /gene="ilvB"
                     /locus_tag="VD694_08600"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HXW12805.1"
                     /translation="MSEMSGAKALMTSLEKEGVDIVFGLPGGANLPIYDALVDANFRH
                     VLVRHEQSAAHMADGYARIKRKAGVCLATSGPGATNLITGIATAYADSSPLIAITGQV
                     PLNMIGKDAFQETDIIGVANPCTKYAFQPRYATEIPEVVKKSFYIAESGRPGPVLIDI
                     PKDVQQDVTEIQFPDLIKVRGYKPVVDPDLSNVGKAVELLVSAQRPIIMAGGGVILSG
                     AFSELQAIAELIMAPVVTTFKGKGAFPENHPLAMGPIGMHGHAEANRIILEADCILAV
                     GARFSDRSVGRFDEFGKGMNIIHLDIDPAEIGKNKSVDIAIVGDVKSALRTMVKMLSK
                     ISIKNSSDNPWLKRRKELIDYFSQNMKDYPREMTARKALKKLRELLPAESIVTTEVGQ
                     CQMWTSLHFDVISPGTFFSSTGLGTMGFGFPASIGAKAARPDVHVVDVAGDGSFNMTE
                     NSLAVSVLENLPVIVFLLNNDMLGMVAQWQRTFYDRRYMGVHQKSCPDYVKIAEAYGA
                     NGQSVQSMDELEKAIKSALKTEVATVIDIKIDPEEDV"
     gene            1804..2514
                     /gene="rpiA"
                     /locus_tag="VD694_08605"
     CDS             1804..2514
                     /gene="rpiA"
                     /locus_tag="VD694_08605"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase A"
                     /protein_id="HXW12806.1"
                     /translation="MNTGDSNSQFHNDNKYVELSQDFFKKYIFKGNTIGLGSGSTVEK
                     IVRNLAHLEYKDTLEFVVTSLQIRVVSESLGLKIVDQKDGNIDVVIDGADQIDSDLNM
                     IKGGGGALLKEKILIASSKRFVIVAQASKFVDRLTMPVPIEVTPFGRIFVMRQLEKMG
                     ALPKIRMLDKGYPFISENGNIIYDTLLPHYNCIVETERDLKNIPGVVEVGLFTDRADT
                     YYKIKNESEFECVVPNKS"
     gene            complement(2874..3017)
                     /locus_tag="VD694_08610"
     CDS             complement(2874..3017)
                     /locus_tag="VD694_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HXW12807.1"
                     /translation="MPVDPVCGIEMDEELATIHEYNGKKYYFCCEGCKSIFSRKPGKY
                     SKK"
BASE COUNT          953 a          625 c          560 g         1037 t
ORIGIN      
        1 tacatcttct tcagggtcaa ttttaatgtc aattactgtt gcaacttctg tcttgagcgc
       61 gctttttatt gctttttcca actcatccat cgattgaaca ctttggccat ttgctccgta
      121 tgcttctgca attttgacgt agtcaggaca acttttttgg tgaacgccca tatatcgtcg
      181 atcataaaat gttctctgcc actgcgctac catccccaac atgtcattat tcaacaagaa
      241 cactattact ggtagattct ctagtacgga aaccgccaat gaattttcag tcatgttaaa
      301 agaaccatcc ccagcaacat caacaacatg aacgtctggt cttgcagcct ttgcgcctat
      361 agatgctgga aatccaaatc ccattgttcc taatccagtg gaactaaaga aagttccggg
      421 ggatataaca tcaaaatgca acgaagtcca catttgacat tgacccactt ctgttgttac
      481 tattgattca gcgggtaaca gctctctcaa ttttttcaat gcctttctgg cagtcatctc
      541 tctagggtaa tctttcatat tttgcgaaaa atagtcgatc aactcttttc tcctttttag
      601 ccatggatta tcactgctat ttttgatgga gatctttgat aacatcttaa ccatagttcg
      661 aagtgcagac ttgacgtcac caacaattgc aatatctaca gatttgtttt ttccaatctc
      721 agcaggatca atatcaagat gtattatatt cattcccttg ccaaactcat caaaccttcc
      781 tacggaacga tctgaaaatc ttgcacctac agcaagtatg caatctgctt cgaggataat
      841 tctgttggcc tccgcatggc catgcattcc aattgggccc attgctaagg gatggttttc
      901 aggaaatgcg ccctttccct taaatgtagt aacgactgga gccattatta attcagctat
      961 tgcctgaagt tctgagaaag caccagacag aataactcct ccaccggcca tgatgattgg
     1021 acgttgcgca gaaaccagta gttcaacagc ctttccaacg tttgataaat cgggatctac
     1081 aactggcttg tatcccctta ctttaattag atctggaaat tgaatttcag taacatcctg
     1141 ttgtacatct tttggaatat caatcagaac tggtcctggt ctaccactct ctgcaatata
     1201 gaatgatttt tttacaactt ctggaatttc tgtagcatat ctgggctgaa acgcatattt
     1261 tgtgcatgga ttagcaactc caatgatatc agtctcttga aaagcatcct ttcctatcat
     1321 gtttaacggt acttgaccgg ttatggcaat taatggagaa gaatccgcat atgctgtcgc
     1381 tataccggtg atcaaatttg ttgcgccagg tcctgatgtt gcaaggcata ctcctgcctt
     1441 tctttttatt ctggcgtagc catcagccat atgggctgct gattgttcat gtcttaccaa
     1501 aacatgtcta aagttagcat caaccagggc atcataaatt ggtaaatttg cgccacccgg
     1561 aagtccaaaa actatatcga ctccttcttt ttcaagggaa gtcataagag ccttagcgcc
     1621 actcatttca gacattgtag gaatattcaa tgatgcttcg tatatatact cgttgtcaat
     1681 tcattagcat tcagtatttc acaatctgct cttgtatatt ggaaattaat tattcaatag
     1741 gcatttttag aatctagttt tcttgtaaag attaaagtag atatgaatag ttcattttag
     1801 cacatgaata cgggtgatag taatagccag tttcataatg ataataagta tgtcgagcta
     1861 tctcaagatt ttttcaagaa atatattttc aaaggaaata ccataggttt gggaagtggt
     1921 agcactgttg aaaaaattgt acgaaatctt gctcatttgg aatataagga tactttagaa
     1981 tttgtagtta cttcccttca gataagagtc gtttctgaat cgctaggact taagatagtg
     2041 gatcaaaagg atggaaatat cgacgtagtc atagatgggg cagaccaaat agattcagat
     2101 cttaatatga taaaaggagg tggtggtgct cttctgaaag agaaaatatt gatagcatca
     2161 tcaaaaaggt ttgtaattgt ggcccaggct agtaagtttg ttgaccgcct cacaatgcca
     2221 gtcccaatcg aggttacccc atttggaaga atctttgtca tgagacaact tgaaaagatg
     2281 ggggctttac caaagataag gatgctagat aaggggtatc cattcatatc ggagaatggc
     2341 aatattatat atgatacatt gttaccacat tataattgca tagttgagac cgaaagagac
     2401 ctgaaaaata ttcctggtgt tgttgaggtg ggattattta ctgatcgtgc agatacttac
     2461 tataaaataa aaaacgaaag tgagttcgaa tgcgtagttc ctaataagtc gtaaagtaga
     2521 ttcgcggtaa tctctcactt atccaagtag taagccttga ctcttagatc agtatcttct
     2581 attttggtca agtcaaataa atttctcata ccgtctttcc gcagtaattg caaaatcaaa
     2641 tggatttaat aatataccac aatttttaca tgtactgttg ataggcttta gcatatcacg
     2701 aacagatttc aagtttgata ttctattatt caaaccacca catttgttgc agaccagttc
     2761 aatattgtaa tatgacaatg gtaaacagtg aacaaaacca aatatctctt gttgggttaa
     2821 ttagttatga ctagagaaac taattcatat aacaatcttc tagttacaat gtgctacttc
     2881 tttgaatatt ttccaggttt tcttgaaaag atacttttgc aaccctcaca acaaaagtag
     2941 tatttctttc cattatactc atgtatagtc gcaagttcct cgtccatttc tattccacat
     3001 acaggatcaa ctggcattat ggtctagtat tattacattt ctatttatat tgtgttccct
     3061 aaaacactct acaagttact attcgatcat caaactagca aaaatctcta atcaggtacc
     3121 tgtgaattct taaatatcgg tgtgtgctac atttgatttt gcaatcattt taaaa
//
LOCUS       DASPFX010000402         3603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1172878, whole genome shotgun sequence.
ACCESSION   DASPFX010000402 DASPFX010000000
VERSION     DASPFX010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1172878"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VD694_08615"
     CDS             complement(<1..387)
                     /locus_tag="VD694_08615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12808.1"
                     /translation="MLAIYGLIGGLVSTAMMTLAEIPSWKKWHLQGVFEWHENQEITR
                     KLLSISNDEKKTIHIKGIFFFHFLNGTLVGIVFPFIITSLFPSFINDIVSLLLIGILY
                     GFIVWIVTLIPIHKPITGLSPWNHPLG"
     gene            complement(1180..1581)
                     /locus_tag="VD694_08620"
     CDS             complement(1180..1581)
                     /locus_tag="VD694_08620"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12809.1"
                     /translation="MLSYTLNLTNNTSNHDRKRNTIMVCDNEQDVLHLFGLVLASRYN
                     VITVDSGEECIEKYTEETRRGNRIHLILLDYKLGTMWGDSVARKINEYNGTNIILISA
                     FDVDHSLVTELENGKYISKYVKKPIETTELV"
     gene            complement(1986..2567)
                     /locus_tag="VD694_08625"
     CDS             complement(1986..2567)
                     /locus_tag="VD694_08625"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12810.1"
                     /translation="MTLHCNSKILCKYPQYYDNDKEILFSSHSFYFHDHGLLYSPVAP
                     SFEQINSYKSVVTASNTTSRFNDSITTNNEHILLVDDEEDIARLFKIALERAGFIVDM
                     YNNPLQSLSNYRAGIYDLLLLDVKMPEMNGFELYKRIRQIDDKSKVCFMTAFEEYYDE
                     FRKIFSDLKNNECFIRKPISMNDLIKTVKSHLN"
     gene            2709..>3603
                     /locus_tag="VD694_08630"
     CDS             2709..>3603
                     /locus_tag="VD694_08630"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HXW12811.1"
                     /translation="MGISYDVPPSINKRKEEDVILGRTELIQNPLSVQTLFIDMIKSA
                     EYEVLLLLPTVNAFLREQRLGIIQLLKQEATERAVIVKILVPADPLIKNNLEDMAAPE
                     DEEGIERKKDFEFRSPSEFVVDTVTIVVIDKKESLVFEKKDDSKENFVEALGLATYSN
                     SKPTVMAYFSIFESLWKQVALYEQLKTHDKMQNEFINIASHEMKTPTQSILGYAELLE
                     DSCKKNEEVEAIKRNAVRLQKLATNLLDVTRIESQTLKLRKETVNINEKFVNVKKDFE
                     NQSPRLCTVKILLVEPVEKNPI"
BASE COUNT         1198 a          589 c          616 g         1200 t
ORIGIN      
        1 tcccaatgga tgattccaag gagatagtcc tgtaatcggc ttatgtattg gtatcaatgt
       61 gacgatccaa actataaaac catatagtat ccctattaaa agtaatgata cgatatcatt
      121 aataaaagat gggaaaagag aagtaataat gaatggaaaa acgattccta caagagtacc
      181 gttcaggaag tgaaagaaaa agatcccttt gatatgtatt gtcttctttt catcatttga
      241 aatgctaagc aattttcttg ttatttcttg attttcgtgc cattcaaaga caccttgtaa
      301 atgccacttt ttccatgacg gaatctcggc taatgtcatc atggctgttg acactagacc
      361 accaatcaaa ccgtagattg ctaacatatc catgcttaaa ctattcacat gtaaactaag
      421 atatttggtg accaaatctc ataaggatat cattttattg catcttttgg ctgttaactt
      481 tttttctttt ttcttgattc agcatattat cttccaatgc cggtgaatga tcattgaagc
      541 tttattaaag ttgtcactat ataatccaag ttagcactag agaacaggca cattagaatg
      601 cttatccttt attattatta tctttagact agtaatagtt tcaaaattat gaagtcacaa
      661 tattagcaat tttgacattc gctaacttct atttgatagt cattaatgaa attaacgata
      721 tagataaagg ataagagaga agcatgttac tgtttctcac cccccatcat ttataatttt
      781 tatatagaat atgcatatat gcatatgcgg tgaattttat tatttatttg ttagaaatac
      841 atcgaatata taaagaatcg attgcttaag tctaaatatt cgtatttaca tatagatcta
      901 atgtaggaat gctctcaaca tcgttaaaga aatccaatat tagaagacca tcaggtataa
      961 tcgctggtct aacagcaact tgggcaatat ttggattatt tttagctgtt gattctcaac
     1021 taaacgttcc tccaagtact ttctataaga caatcggaat agtctttgga gtcaattcta
     1081 cctatgcaat gtatgtaggc tttctcctat ttatggtaac tgcggtaatc atttcaatga
     1141 tttacaacta tgtatcagaa catgttccat gcccaaacac tacactagtt cagtcgtctc
     1201 aattggtttt ttcacgtatt ttgatatata tttaccattt tctaattcag tgacaagtga
     1261 atgatctaca tcaaaagctg agatgaggat aatgttagtt ccattgtatt catttatttt
     1321 gcgagcaaca gaatcacccc acatcgtacc caatttataa tccaaaagta tgagatgtat
     1381 tctgttacca cggcgagttt cttcggtgta cttctctata cattcttcac cagaatctac
     1441 cgttatcaca ttatatcgtg acgcgagcac tagcccaaat aaatgaagta catcctgttc
     1501 gttatcacat accataattg tattcctttt tctatcatga ttactagtat tattggttag
     1561 attcaaagta tatgaaagca aattggagtg atgcccaata caaatacctt tagaattaaa
     1621 gatgcaaatc atacttatgg agtcataatt tgttctagtt gagtgtcaac aaaaatgaag
     1681 caagaggtat tagctaacca atgataatga agtatcgcta ttcatacata cttcatgccc
     1741 caatgattcc tttttttatt atgtacttat ttgacagtga aagacaatat ggtagaggta
     1801 attgctatag cgattcttct tttaattgac atttttctaa ttgcgcatca atagatttaa
     1861 cgctatcacg ctttaggact ggtctaatgc cagaccatac cgttatactg tatggtatgt
     1921 cgtcgtcgaa ctttgtggac gacgtctcag ttgtgtcgtg tgtatcttct aggagtaatt
     1981 cagctttaat tcaggtgcga cttaacggtt ttgatcaagt cattcatact tattggtttt
     2041 ctaataaagc attcgttgtt ctttagatct gaaaatattt ttctgaattc gtcataatac
     2101 tcttcaaagg cagtcataaa acatacctta cttttatcat caatttgtct aattctctta
     2161 tacaattcaa atccattcat ctccggcatt ttaacgtcga gcaatagtaa gtcgtatatc
     2221 cctgctctat agttggataa tgattgtaga gggttattat acatatccac aataaaaccc
     2281 gcgcgttcaa gagctatttt gaataacctt gcaatatctt cctcgtcgtc aactagtaaa
     2341 atatgttcat tgttggtagt aatcgaatcg ttaaatcgtg aagtggtgtt ggatgctgtg
     2401 actaccgact tgtaagaatt gatttgctcg aagctcggag caacaggact atataagagt
     2461 ccatggtcgt gaaaataaaa agaatgagaa gagaataata tttctttatc attatcataa
     2521 tactgagggt atttgcacaa tatctttgaa ttgcaatgta aagtcatttt gcttattgta
     2581 cttaaatata atagacaagg agtatataga aattagctaa ctaactagtt atacagaggt
     2641 caaaatatag tgtggttgaa agtttaaaat tactttatat agtttgtatt ctactctgaa
     2701 ttaatagctt ggggatttct tacgatgttc ctccgtctat aaacaagaga aaagaggaag
     2761 atgtcattct aggaaggacg gagttaattc agaatcctct atctgtacag accttgttta
     2821 ttgatatgat aaaatcggca gagtatgagg tattactact acttccaaca gttaatgcct
     2881 ttcttcgtga acaacgctta gggataattc aattattaaa gcaggaagcg accgagcgtg
     2941 ctgtaattgt taaaattcta gttccagctg atcctttaat taagaataat ctagaagata
     3001 tggcagctcc tgaagatgag gaaggaatag agagaaaaaa ggatttcgaa ttccgctctc
     3061 ctagtgaatt tgtagtagat acagtaacca tagtagtaat tgataaaaaa gaatctctag
     3121 tatttgaaaa aaaagatgat tccaaagaga attttgttga ggctttggga ttagctactt
     3181 attctaacag taaaccaact gtgatggcct acttttcaat ctttgagagt ttatggaaac
     3241 aagtagcatt atatgagcaa ctgaaaaccc atgacaagat gcaaaatgaa ttcatcaata
     3301 tcgctagtca cgagatgaaa acaccaaccc agtcgatttt aggatatgct gaacttttgg
     3361 aagactcctg taaaaaaaat gaggaagttg aggcaataaa aagaaatgcg gtaaggcttc
     3421 aaaagcttgc tactaatcta ttggatgtaa cacgaattga aagccaaaca ctaaagttaa
     3481 gaaaggaaac agttaatata aatgaaaagt ttgtgaatgt gaaaaaggat tttgaaaatc
     3541 agtctcctcg cctttgcacc gtgaaaatat tattggtaga accagttgaa aaaaatccta
     3601 tat
//
LOCUS       DASPFX010000403         3370 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_688185, whole genome shotgun sequence.
ACCESSION   DASPFX010000403 DASPFX010000000
VERSION     DASPFX010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_688185"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(236..565)
                     /locus_tag="VD694_08635"
     CDS             complement(236..565)
                     /locus_tag="VD694_08635"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HXW12812.1"
                     /translation="MEICIRPLTDSDLQQADHIFRLAFGTFLGLSDPMTYAEDADYIK
                     SRFHANPSGSYAAEVNGKLVGSNITTNWGSVGFFGPLTIHPEYWNRGIAQKLLETTMK
                     LFDKWKY"
     gene            complement(912..1937)
                     /locus_tag="VD694_08640"
     CDS             complement(912..1937)
                     /locus_tag="VD694_08640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12813.1"
                     /translation="MTTLLAAMQNSVLVLESSKTGWRTHENLRGTHPQGIAFDHRIPN
                     RAYCGTFGEGLWKTDDNGLTWNSIGKNEISNANIMSVSVTPLKEENDRGSSKVYVGTE
                     PSTLCVSSDGGESWEIMRELNKLESSKTWSFPPRPWTHHVCWIEPDVNNSDYIFVAIE
                     AGALVHSRDGGRTWIDRVKQGPYDTHTLATHKNAPKRLYSAAGDGYFESFDYGESWNS
                     PTEGLRHHYLDGLAVDSTNPQNVIVSASLSAQQAHSIENAESFIYRKSLDGEKWKIVS
                     KGLPEPKGTIITIFVSNPFNSGEFFALNNRGIFSSTDSGASWTSLGITWPKEYLLQHP
                     WALSVEN"
     gene            complement(1975..2862)
                     /locus_tag="VD694_08645"
     CDS             complement(1975..2862)
                     /locus_tag="VD694_08645"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HXW12814.1"
                     /translation="MSPQFTIIDAPSILGLRPTGVELLPDALKAAGLIEKLHVNYAGR
                     VSSPLSYNSERDKVTLLLNPNSIKTFSIQLADMVSSVIRSRQYPIVLGGDCSILIGNL
                     LALRRLGRYGLFFIDGHADFYQPEASLTGEVADMDLAIVSGRGPDILTNIDNLKPLVR
                     DEDIILFGYRDREQAASFGSQDVRNTSINSFDLAYIKQLGIRTTASEAIKNILNDELG
                     GFWIHLDADVLDDAIMPAVDYRLKGGLSFYELSELLKIIVATGRSIGMDITIFNPNLD
                     PDGFIARRFVSAIVKGISS"
     gene            3053..>3370
                     /locus_tag="VD694_08650"
     CDS             3053..>3370
                     /locus_tag="VD694_08650"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HXW12815.1"
                     /translation="MEKLNITEKDEGKEIGNQIEMIHFRVPKKNHDAMILFCKQFNDI
                     FKKYGILHWEIFQLSRTDNMDGFTNIFQTVSANPNEEEVWVELLSYRDKKHKDEVMEK
                     MKND"
BASE COUNT         1098 a          608 c          558 g         1106 t
ORIGIN      
        1 tctgcgacag acatttagaa atttgagctg ttcttgttgg tattgttcaa tatcgcctat
       61 ctttttctta tcaaataata aagagaattt ggaccatttt aaactagatt tattattata
      121 attatgtatt acatctttgg acataattac tgtaaggaaa tatggccaaa aattaaattt
      181 ttggtataaa tctatatgct ttagactgtt tgcatatgta aacagtcctg catatttagt
      241 atttccattt atcaaatagt ttcatagttg tttcgagtag tttttgagct atcccccgat
      301 tccaatattc tggatgtatg gttagaggtc caaagaatcc aacactaccc cagttagttg
      361 taatattaga tccaacaagc tttccattaa cttcagccgc atatgagcca gatggatttg
      421 catgaaaacg actcttgata taatctgcat cttcagcata agtcataggg tctgaaagac
      481 ctagaaaagt cccaaaagca agtcgaaata tatgatcagc ctgttgaaga tcactatctg
      541 taagtggacg aatacagatt tccattacta ctctattttc ttaatattaa tatacttagg
      601 ctttcttcat cttactgaca aattgtttga aaatacgatg ttagtttgta attgccaatt
      661 acgggaatat actcaagggc ttgtagaata taaagatgaa atggtaatat tagtttaaaa
      721 cattactggc ttgtaaatgt attttctaaa tttaaagcta ctaataaaag gtaaattcta
      781 aatttatcct atggttgtag atgatttggc ttttagtttg gactatacca aaaaatgtta
      841 aatgctttga aaaccatttg tgtagtctac aataaattta gttactaatt tttttagtat
      901 ctttaactat attaattttc tacactgagt gcccaaggat gttgtaaaag atattctttg
      961 ggccaagtaa taccaagcga tgtccaagaa gcgccagaat cagtagagct aaatattcca
     1021 cggttgttga gagcaaaaaa ttctccactg ttaaaaggat ttgaaacaaa gattgtaatt
     1081 attgttcctt tgggttcagg aagacctttt gaaacaatct tccacttttc gccatctagc
     1141 gattttctat atataaatga ctctgcattc tcaatagaat gtgcttgttg tgcagatagt
     1201 gaagctgata caatcacatt ttggggatta gttgagtcta cagcaaggcc atcgagataa
     1261 tgatgtctga gtccttcggt tggactgttc caggattctc catagtcaaa actttcaaaa
     1321 tagccatcac ctgcagcaga atatagtcgt ttcggcgcgt tcttgtgagt agccaaagtg
     1381 tgagtatcgt atggaccttg cttcactcgg tctatccaag ttctcccacc atcacgacta
     1441 tgaactagag ctcctgcttc tatggcaaca aaaatataat cagaattatt tacatctggc
     1501 tcaatccaac aaacatgatg agtccaaggt ctaggaggaa agctccatgt tttagaagat
     1561 tctaacttgt tcaattctct cattatttcc catgattcgc ctccgtcact tgatacacat
     1621 aatgtacttg gttcggttcc aacgtatacc ttactactac ctctatcatt ttcttctttt
     1681 aatggagtaa ctgaaactga cattatgtta gcattagaga tttcattctt tccaatacta
     1741 ttccaagtca gtccattatc atcagttttc cacaaaccct ctccaaaagt tccacaatat
     1801 gctctatttg gaatcctatg atcaaatgct ataccttgtg gatgagttcc tcttaaattc
     1861 tcgtgagtcc tccatccggt ctttgaggat tcaagaacca ggacagagtt ttgcattgca
     1921 gctaaaagtg tagtcattga aagaattgac aacctatttt tataaaaata ttatttatga
     1981 tgatatacct ttaactatag cagatacaaa tctgcgagct atgaagccat caggatcaag
     2041 atttggattg aatatagtaa tatccattcc aatactgcga cctgtggcaa ctatgatttt
     2101 caaaagctcg ctgagctcat agaaacttaa accacccttt agacgataat ctactgctgg
     2161 catgattgca tcatctaata catcagcatc gagatggatc caaaatccac ccagttcatc
     2221 attcaaaata ttcttgatag cctctgatgc agtagttcta attcctagtt gttttatata
     2281 tgcaagatca aatgaattaa tgctggtatt tctaacatct tgacttccaa aacttgctgc
     2341 ttgttctcta tcacggtatc caaatagaat tatgtcttca tcacggacaa gtggtttaag
     2401 attatcgata ttagtcaaaa tgtctggacc tcgaccagat acaattgcaa gatccatatc
     2461 agcaacctct cctgttaaag aagcttctgg ctgataaaaa tcagcatgac cgtctataaa
     2521 gaatagtcca tatcttccca aacgtctgag agctagaaga tttccaatca ggatactaca
     2581 gtcacctcct aagactattg gatattgtct gctacgaata acagaagaga ccatgtctgc
     2641 tagttgtatt gaaaatgttt tgatagagtt aggatttagt aaaagtgtta ctttatctcg
     2701 ctctgaatta taagacaaag gagaagaaac tctccctgca taattcacat gcaatttttc
     2761 aatcaggcct gctgccttca atgcatctgg tagaagttct actccagttg gccgtaatcc
     2821 cagaatcgaa ggagcatcta taattgtaaa ttgtggtgac aatattattt ttctatgaat
     2881 aaataaggag tttatataat tatagctagt tcttatacaa tagctaatct cttaattcat
     2941 aactgtgatg tacttcctca ttttggtctt ctttgatgaa ttgcaactaa ctaactaact
     3001 atactttcac tcccttacat atttaaaaac tatactttgt atactattgg tcatggagaa
     3061 attaaacata acagaaaagg atgaaggaaa agaaatcggg aaccaaatcg agatgataca
     3121 tttccgagta ccaaaaaaga atcatgacgc catgatatta ttctgtaaac aatttaatga
     3181 tatttttaaa aaatatggga ttctacactg ggaaatcttt cagctcagta gaacagataa
     3241 catggatgga tttaccaaca tattccaaac tgtctctgca aatccaaatg aggaggaagt
     3301 atgggtagaa ttgttatcat atagagacaa aaaacataaa gatgaagtca tggaaaaaat
     3361 gaaaaatgat
//
LOCUS       DASPFX010000404         4689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1826966, whole genome shotgun sequence.
ACCESSION   DASPFX010000404 DASPFX010000000
VERSION     DASPFX010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4689
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1826966"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..860
                     /locus_tag="VD694_08655"
     CDS             <1..860
                     /locus_tag="VD694_08655"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12816.1"
                     /translation="FFPKTSSSGNIDGFKQALECLISMISARKIINAKLHKESVPDIS
                     YRISADYGKLEVASEISGSYDLFGPTLNFCAKINKMAPPNGIAIGADLWTIVNSFPKL
                     AKRYHFREIKELSWKENKYSYPVYLLLPSTDIFIAGDPILSVDSVPRYEFEYTPKALT
                     IMLVDDDPSISLLFAECLRSAGIVVNSFTDPEKALSHFIESEYRHYDLVVTDIRMAQL
                     NGFELYQQLKTLDPNIQVLFVTALDIAQEITTLLPEVKPNQFLIKPVSPNFLINTVKQ
                     HAKKNIQGA"
     gene            complement(1576..1989)
                     /locus_tag="VD694_08660"
     CDS             complement(1576..1989)
                     /locus_tag="VD694_08660"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HXW12817.1"
                     /translation="MSDPENSEKETEAIAHRFHMDIFQKGDLLVADQILATNFVWRSP
                     AVPSELAHGPEGTKKIASAVIDSIPDRKIIHDDIVTKGDKVLIRWTMTGTLKKEIFGL
                     QPSEKSATIIGFDLFRISNGKIVEMWQQFSPGSWS"
     gene            2438..2752
                     /locus_tag="VD694_08665"
     CDS             2438..2752
                     /locus_tag="VD694_08665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12818.1"
                     /translation="MIAIPFGNPKFIDRAIILEILFATLSVLIWKGYSKALYACIPLA
                     LLVIIGNSLAPPHVKLMMTFSRPLNAIILIAGGYVLQIALIYISLKSILDKRSSRVTA
                     SA"
     gene            complement(2899..3315)
                     /locus_tag="VD694_08670"
     CDS             complement(2899..3315)
                     /locus_tag="VD694_08670"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12819.1"
                     /translation="MSTNKKIVSIVDDDVYTAQLFHEALSENIEGILVFSFKDPIMAF
                     EHFLKNKENCALVISDLRMPGLNGLELLKKVKDSNPKVRTILMSAYNFEEEELYKSYM
                     IEAVINSTIEKPVTMNKLYQTVRDELNAYQSASHQK"
     gene            complement(3368..4006)
                     /locus_tag="VD694_08675"
     CDS             complement(3368..4006)
                     /locus_tag="VD694_08675"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HXW12820.1"
                     /translation="MDIPKWSLSGNWFDVCNCNIPCPCTFAQSPSYGNCEGVMAYHIK
                     KGQYGETSFDGLNVLILDSFKGNIWAGETKADLALFFDERADEDQRNVLDMIFTGKAG
                     GLMGKFSKLFGKIRGLEFAPIKFEVAGDLGYWSAEIPGKVIARGEALTGPMTPTDKRV
                     QTLNPPGSEVGPGTVATWGTAVTDEVNVPEFRYEWKRSGRSSKHIAFNWTGP"
     gene            4306..4455
                     /locus_tag="VD694_08680"
     CDS             4306..4455
                     /locus_tag="VD694_08680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12821.1"
                     /translation="MADSVLSYAITTGVFIGLVVILSASRAKRSSKKKQSLVGNSEEI
                     KQSPA"
BASE COUNT         1493 a          918 c          785 g         1493 t
ORIGIN      
        1 tcttctttcc taaaacatca tcttccggaa atatagacgg attcaaacag gcattggaat
       61 gtctaattag catgatatca gcccggaaaa taataaatgc caaacttcat aaagaatccg
      121 ttccagatat atcatataga attagtgcgg attatggtaa gttggaagtt gcgagtgaaa
      181 tatctggttc ttatgatctc tttggaccta ccttaaactt ttgtgcaaaa attaacaaaa
      241 tggcgccacc gaacggaata gccataggtg cagatttatg gacgatagta aattcatttc
      301 caaaacttgc caagcgatat cactttcggg aaataaaaga actgtcctgg aaagagaaca
      361 aatattcata tccagtctat ctgctcctac cctccaccga tatatttatt gctggagatc
      421 ctatattgtc agtcgacagc gttcctcgtt atgagtttga atatacacct aaagcgttaa
      481 cgataatgct agtggatgac gatccatcta tttctcttct atttgcagaa tgtctgagat
      541 cagcaggaat cgttgtaaat tcatttacag atcctgagaa ggccctctct catttcatag
      601 aatcagaata tagacattat gatcttgtag ttacagacat tcggatggct caattaaatg
      661 gatttgagct ctatcagcaa ttaaagactt tagatccaaa catacaggtt ttatttgtta
      721 cagcactcga tatcgctcaa gaaatcacca cgttattgcc agaggtaaaa ccaaaccagt
      781 tccttatcaa accagtaagc ccaaattttc ttattaatac tgtcaaacaa catgcaaaga
      841 agaatatcca aggagcttga tcaaagtctg gattgcaaaa taaatagatg agtcgtcata
      901 accattttaa tcgtagtagc aggaatactc tgatcttttt tagtatggca cgtacgcatt
      961 tagttcccag aattaaatgc attccaatct gaaaaattag atcaatcccg acggacagga
     1021 atattcaatt gtcaacaaaa actttaatgg taactaggtc ttactaattt atagaatcta
     1081 attatagtac taattttatt gctcgtaccg acgtccgaaa acctgatcca aatatgataa
     1141 catattctga ttgatactat tattgcgacc aaaaaatata ccaatctcac taatggcctt
     1201 cgcaacaata agcagagtaa gtttactcaa tcttttttat ctcgcgtatt gtgagaaaac
     1261 aaaccaacca tgactactga gggtttataa ctatttgata attttaataa attttgtata
     1321 taattacacc tgtagaaact catgtagtta ctaattaaca gacgaaacac ttgaaaaacc
     1381 tccatatatt tcctcatcgt atctaaattt aggattatta gtatttgacg agaacctcgg
     1441 cagatgcttg actcaatcta gtagctccaa aaacttaagg tagttcaacc attgcattac
     1501 gatttttacc agttaagcac taactgaaat agatattgtc cggtccatat ttaataccta
     1561 tttatattgt atttactaag accaagaacc aggactaaat tgctgccaca tttcaacaat
     1621 tttaccgtta gatattctga agagatcaaa acctataata gtagctgact tttcactcgg
     1681 ttgtaatcca aagatttctt tcttcagggt tccggtcatt gtccatcgaa tcaggacttt
     1741 atcaccttta gtaacaatat cgtcgtggat aattttacga tccggtatgc tgtcaattac
     1801 ggcagaagca attttctttg taccttcagg accatgagca agttctgaag gaacagctgg
     1861 acttctccaa acaaagttag tggcaagaat ctggtctgct actaacaagt ctcccttttg
     1921 aaatatatcc atatgaaaac ggtgggctat agcttcagtt tctttttctg aattctctgg
     1981 atctgacata aaatccttgt tgtcctagaa tacttaaagg tttttactca cattcttata
     2041 attcagatcg taaattcaca tcgatattag ttcgtaagct cttcgaccca ccattctttg
     2101 agctcttata actctgtttt tatctttatt ttagtaattg gatatctcta aatccacctt
     2161 tggagagaaa tttgtccttc atcctccgag aaaaaagatt catgcaaggc tttcaaacta
     2221 ttggtaaagt atgttgaaat atcaggattg gatgcaatgg caaccggtga tgcgagtcca
     2281 tagttctggc ttgatacatt ccatggacgg attgaacttc aaattttggg cataacataa
     2341 ttcaaacaga atataaagtt gtaagtgaaa atactatcaa acgacattgc attatcgcgc
     2401 taacctgatt actttagtat ctattattgt attagggttg atagcaatcc catttggaaa
     2461 tcccaaattt attgataggg caattatttt ggaaatatta tttgctacac tatctgtttt
     2521 gatatggaaa ggatatagta aagcacttta tgcatgtatt ccattggctc tcttagttat
     2581 cattggcaac agccttgctc caccccatgt taagttgatg atgacttttt ctaggccatt
     2641 gaatgcaatt attctgattg caggtggata tgtattgcag attgctttaa tctacattag
     2701 tttaaagtca atactcgata aaagatcaag tagagtaact gcgtctgcat aaacatagag
     2761 acccgataca cgaggctacc acaggccagt tgtacctaaa agctaaatag aagttagtag
     2821 aaccctagtg catgcagggt tcaaatcccg aagcccgaag acttgactta aagagaagtc
     2881 agccaatata aaaggaagtc atttttggtg agatgccgac tgataagcgt ttaattcatc
     2941 tcttactgtt tggtatagtt tattcatcgt gacaggtttt tcaatagttg agtttatcac
     3001 tgcctctatc atataactct tgtacaattc ttcttcttca aaattataag cactcatcaa
     3061 tatcgttctt actttaggat tcgaatcctt tacttttttg agtaattcta atccatttag
     3121 acctggcatt cttagatccg aaataactaa ggcacagttc tctttgttct taagaaagtg
     3181 ctcaaatgcc atgatgggat ctttaaaaga gaaaactaaa attccttcaa tattttcgga
     3241 caaggcctca tgaaagagtt gagcagtata gacgtcatca tctactatgc taactatctt
     3301 cttgttagta gacattaaat gcgcacctta ggattattgg tataaacagc actaacattc
     3361 attgtcacta tggacctgtc caattgaatg caatatgttt acttgaccta ccgcttcttt
     3421 tccattcgta acgaaattct ggaacattta cttcatcagt aacagccgtt ccccatgttg
     3481 caacggttcc aggacccact tcactccccg gaggattgag tgtctgaact ctcttatcag
     3541 taggagtcat gggaccggtc agagcttcac ctctagcgat tacctttcct ggtatctcag
     3601 cactccaata gcctagatct ccagccactt caaatttaat aggggcgaat tcaagtccgc
     3661 ggatttttcc aaataacttt gaaaattttc ccatgagtcc accagccttc ccggtaaaaa
     3721 tcatatccaa aacatttcgc tgatcttcat cagccctctc gtcaaaaaat aatgcaagat
     3781 ctgctttcgt ttcacctgcc caaatattcc ccttgaaaga atctagtatc aacacgttca
     3841 atccatcaaa tgacgtttca ccatactgtc ccttctttat atggtatgcc attactcctt
     3901 cgcaattacc gtaactagga gattgagcaa atgtgcatgg acaaggtatg ttgcagttgc
     3961 aaacatcaaa ccaatttcct gacaggctcc actttggaat atccatttgc tataagtagc
     4021 gttgagtcgt attttaggat tatactccct aatttccaga ctagtgtaaa ccagaaggtt
     4081 attgagaaaa gctaaatacc atggaataga accatagtac atgcaggatt ccaatcctga
     4141 cgtcctagga ccttaactcg attgtttatt attcacttgt tacttaccga atagccaaga
     4201 cttctctgca tttggattaa ttaaattact gtcaaagcac gtttaattga cattttttgc
     4261 ctaaagtaaa atgtttatct cgaatttagt ttataatatg attacatggc tgactcggtg
     4321 ttatcatatg ccatcacgac tggcgtcttt attgggcttg ttgtaatctt gtctgcatca
     4381 agagcaaaaa gatctagtaa gaagaagcaa tctcttgtag ggaattcaga ggaaatcaaa
     4441 caatcacctg cttgaaaaat aaaattgatt tactcgccct agaggaagag atcactatcc
     4501 taggatatgt aagcatagaa aaaagatcaa gtgtgcaaaa ataaataagt aattaacaaa
     4561 gaacttattg taacttagtt acgtaatatt ggtgggaagc gtttcaaaat tagtcactta
     4621 cgccccagta atttcttgta atgaattctc caagattgcc agatgcatct caaaaataaa
     4681 ttgatttag
//
LOCUS       DASPFX010000405         5734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_116491, whole genome shotgun sequence.
ACCESSION   DASPFX010000405 DASPFX010000000
VERSION     DASPFX010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5734
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116491"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(264..1478)
                     /locus_tag="VD694_08685"
     CDS             complement(264..1478)
                     /locus_tag="VD694_08685"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12822.1"
                     /translation="MNCYFGKSAVGEDTNNKKWLIDLANNNTIQSSINRLNSDSKNSS
                     PTVPEKNSSNDVPLKNNSENFCVSLIDIVGSTRIVSTIDSSKNIRNFYGTFLNSVANI
                     LKKYHAKIIKTVGDGIISYFPETMDTSNLSAFENVVKCSFAQIEERSNINSTLLENNL
                     PTISYRVSIDYGKVERTQIKGFDKEDLFGSTVNFCSKINLFAPPNSIVMGNDLYQIMK
                     SLKVISTPFKLEEMNSYYCGAGKFSYPLYLLSRVNQTNMEHIHPLNRSLDEIRKYVFN
                     GIKSSRAPKILLVDDEKDDLVVLEKFLKLGGFEVNSFSNPRQALLHYANTDPYSYDLI
                     ISDIRMPEINGFQLYYKLKSIKHDAKILFATCLNIAEELLELLPEVDPPQVIQKPIEK
                     KKFIEIVKKQIL"
     gene            complement(1559..2284)
                     /locus_tag="VD694_08690"
     CDS             complement(1559..2284)
                     /locus_tag="VD694_08690"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12823.1"
                     /translation="MAGNIGSFSFDVTQRILYTLYHDGSSRKTALATKTRLNYNVCLR
                     YIKMLKVLGWLEVGAAVAITETGRNVLKRLMSETIVDSKGIETPLAHLNSHKHLVSGI
                     PIQKTLKINRKTHHDQAQNSTIMIVDDEPDVLLTYESFLSYTGFNVRTYADSYQALKA
                     FASNPNLYDLVILDIRMENLNGLQLYQSLKAMNPSSKIIFVSALDAAKELTSIFSDIG
                     QDDVIKKPVEKEAFIKAVRISLE"
     gene            complement(2503..2694)
                     /locus_tag="VD694_08695"
     CDS             complement(2503..2694)
                     /locus_tag="VD694_08695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12824.1"
                     /translation="MKLYNNSTEIPQSLVPWISELESLGIKSEKLNELNDVYEVKNLV
                     ENIKQTLFQDFKSSYQREL"
     gene            3049..4062
                     /locus_tag="VD694_08700"
     CDS             3049..4062
                     /locus_tag="VD694_08700"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HXW12825.1"
                     /translation="MALSILAHALVCSLLLVFLILPERNLIFENLASGSKEEVFSPIN
                     YCFNFKWGSEGSANGQFLRPHDVNFDSKGNVYVSDRDRNDIQKFTPNGTFLMKWGSEG
                     SKAGQFNVPYSIEVDPFDNIYVVDRGNDRIQKFDENGTFVKQWDRPEKINGTDQEFGS
                     PEDMVINQKTGIIYITDTGNERVLKLDRNFSYLLQWGSIDGKASNEKGKFNHPHGIDV
                     DSNGYVYVNELENPRIQKFDENGTFVKQWGSEGKGNGEFTPLLEHLEVDSKQDMIFMV
                     DGALNPRIQVFDNDGNFTTSFGTNGSGDGQFSKPEHVNIDSSGNAYVVDRGNQRMQVF
                     SPC"
     gene            4325..5650
                     /locus_tag="VD694_08705"
     CDS             4325..5650
                     /locus_tag="VD694_08705"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HXW12826.1"
                     /translation="MTSITLSIILVCSLYLLTYLPDQIAQGQNATSPAPLITDPNLKV
                     ELIAKHLNFPTAIDFLGNNDLILAEKNTGNVFKVTNGNVTGPLLHIDVGVKDERGLLG
                     IASSGYTNNSLQENLPVYLYHTQCIKDKVADTQNCENQISRYELDRKNNTLINPKLIV
                     SLPGLPGPSHNGGKLLMDKDGNLLVTVGDLQSTKFNQNKTGYDTEAQNILNGTAPDGR
                     AGILRITQDGKSVGSGILGDDSPLNLYYAYGIKNSFGIGIDPLTDNVWDTENGPQFGD
                     EINLVKPGFNSGWEKVQGIWKLNQTREKENVYDESKNEVEFVNFDGKGKYSPPEFVWD
                     KPVAPTAIVFLNSKKLGEQYENDIFVGSAKKGTLFHFDLNPDRESLDLSGDLTDMLYS
                     KKEDSSSIVFGENFGVITDLKVGPDGYLYVVSASRGTDEGAIYRIAPIS"
BASE COUNT         1848 a          947 c         1034 g         1905 t
ORIGIN      
        1 tttttaacgt tctcttctgt cacaatttgg atagaataaa acacagtaaa tgagaatacg
       61 actattgata ttacagatag aattccgatt ttgtagattt taggtaattt cagggacatg
      121 cagttaccgt cctaattata atatactatg ttactaattt cctttgctcc tattttgtta
      181 ctatcataat atttatttag caaaacaaac tggcatgact gaaatctcag gcataacatt
      241 gggtattaaa cttagaggtt tcatcatagg atttgctttt tgactatttc aataaacttc
      301 ttcttctcaa ttggcttttg aatgacttgt gggggatcaa cttcaggaag taattctaag
      361 agttcttcgg caatgttgag acaagttgca aacaatattt tagcgtcatg ttttatcgac
      421 ttaagtttat agtaaagctg gaaaccattg atctctggca ttctaatatc acttatgatt
      481 aggtcgtatg agtaaggatc tgtgtttgcg tagtgcaaga gggcttgtcg tggattagaa
      541 aatgaattta cttcaaagcc acccagtttt aggaattttt ctagtacaac caaatcatct
      601 ttttcatcat ctacgagtaa aattttcggt gctcgagagg attttatgcc attgaataca
      661 tattttctta tttcgtccaa agatctattt aggggatgaa tgtgttccat atttgtctgg
      721 tttactcttg agagtaaata taatggatag gagaactttc ctgctccgca ataatagcta
      781 ttcatttctt caagcttaaa tggagtacta attactttta gtgatttcat tatttggtaa
      841 agatcatttc ccattacgat actatttgga ggtgcaaaca aatttatttt cgaacaaaaa
      901 tttacagttg atccaaagag atcttcctta tcaaatccct tgatttgagt tctttctact
      961 tttccgtagt caatgcttac tctgtaactt attgtcggta aattgttttc taaaagcgta
     1021 gaattgatat ttgatcgttc ctcgatctga gcaaagctgc attttacaac attttcgaat
     1081 gcactcaaat tagatgtatc catagtttct ggaaagtatg aaattatacc atcaccaact
     1141 gtctttatga ttttagcatg atacttcttt aggatattcg caacgctgtt aaggaaagtt
     1201 ccataaaaat ttctaatatt ttttgatgaa tctattgtcg atactattct ggtagatcca
     1261 acaatgtcaa ttaggctgac gcagaaattc tcagaattgt ttttgagcgg aacatcatta
     1321 ctactatttt tttcaggcac ggtgggactt gagttttttg aatcagaatt taatctatta
     1381 atggatgatt gtattgtatt gttgttagct aaatcaatta accatttttt gttattcgta
     1441 tcttccccga ccgcactttt gccaaaataa caattcactc attaagttag ttgttaatta
     1501 cttttaagca atgcttactt tccgaatact gatcaaagca taatttttcc aaattttatt
     1561 actcaagtga gattcgtacc gccttgataa aagcttcctt ctctacgggt ttctttataa
     1621 catcatcctg accgatatca gaaaagatac tggtcaattc cttagcagca tcgagtgcag
     1681 aaacaaatat aattttggaa gatggattca tagctttaag actttgatac aactgtaatc
     1741 cgttcaaatt ttccattctt atatctaaaa taaccaggtc atatagatta ggattggatg
     1801 caaaggcctt caatgcctga taagaatcgg catatgttct cacattgaac ccagtgtagg
     1861 acaagaatga ttcgtaagta aggagtacat caggttcatc gtcaacaatc atgatagtag
     1921 aattttgggc ttgatcatga tgcgtcttcc tatttatttt cagggtcttt tgaatgggaa
     1981 taccactgac aagatgttta tgcgaattca gatgtgcgag tggagtttca atacccttgg
     2041 aatctacaat tgtctcactc attaacctct tcaaaacatt tcttcccgtc tcagttatag
     2101 caacagcagc accaacttct aaccacccca gtacttttag catcttaatg tatctcaaac
     2161 atacattgta gtttaatcgt gtttttgtgg ccaaggcggt ctttcttgat gaaccatcgt
     2221 gatacaatgt ataaagaatt ctctgagtca catcaaacga aaatgatcca atgtttcctg
     2281 ccacctatac ttttaatggt ttctcctata tgaaatttcc ttattttact ttaatctatt
     2341 acttttctct ttataggaat aatattatga ataagtattg gtaattacac tattcttaat
     2401 aagacaatta aaaacactaa tgatgctaca aaaatctgag gttatactaa aaaagtctta
     2461 ctgattaaag tatcaattat tcatcaaaaa atgcaagtta tatcataatt ccctttgata
     2521 actggactta aaatcttgaa ataatgtctg cttaatgttc tctacaagat ttttaacctc
     2581 gtaaacatca ttcaactcat ttaatttttc tgatttgatt ccgagtgatt ccaattcgga
     2641 tatccaaggc acaagagatt gtggaatttc ggtactgtta ttataaagtt tcatcagtat
     2701 caagagattg tttgcacttt ataataagat agtgtcgtag atatctttag cttccgggaa
     2761 tagccaattc ggatgatctg agctttacta gattgatata agaaaaacta tttgatgact
     2821 ctagaatttt cagatatttt gagcaattcc aataatcata ggttaataga tgcgtcccac
     2881 aaatcatcac ggtatcctaa atcaatgccc acttacagta gacaattaca ggttcttgat
     2941 catttaatga gcattgatca ttaatattta atcataaaat agaatatttt atttaacttt
     3001 gttgcttgta ccagaagtct tagatagctt taaggtctat taactactat ggcgttatcc
     3061 attttagctc atgccctcgt ttgttcattg ttactagtat ttcttatttt accagaacga
     3121 aatttaatat tcgaaaatct tgcatcagga agtaaggagg aggtatttag tcccataaac
     3181 tattgtttta atttcaaatg gggttctgaa ggttcagcta acggtcagtt cttacgcccg
     3241 catgacgtaa attttgattc aaaaggaaac gtgtatgtta gcgatagaga tcgaaatgac
     3301 atacaaaagt tcactccaaa cggaaccttc ctaatgaagt ggggatccga gggtagcaag
     3361 gctggacaat tcaacgttcc ctacagtatt gaagtggatc catttgataa tatttatgta
     3421 gttgataggg gtaatgatcg aattcagaaa tttgatgaaa atggtacttt tgttaaacaa
     3481 tgggacagac ctgaaaaaat caatggaact gatcaagagt ttggaagtcc agaagatatg
     3541 gtcataaatc aaaagacagg gattatttac attaccgata ctggtaatga acgtgtcctc
     3601 aagctggata gaaatttctc atatttgtta cagtggggtt caattgatgg caaagcaagt
     3661 aatgaaaaag ggaaatttaa tcacccgcat ggaattgatg tcgattcgaa tgggtacgtt
     3721 tacgtaaatg aattagaaaa tccaagaatt cagaaattcg atgaaaatgg tacttttgtt
     3781 aaacaatggg gttccgaagg taaaggaaat ggagaattta caccgttgtt agaacatctc
     3841 gaggtagatt ccaaacaaga catgatattt atggttgatg gggcacttaa tccaagaatt
     3901 caagtttttg ataacgatgg taattttacc acttcttttg gaactaatgg gagtggagat
     3961 ggtcaattct caaaacccga acatgtcaat attgattcat caggtaatgc ctatgttgtc
     4021 gataggggta atcaacgaat gcaagtattt tctccatgct agtgccaaca cttcaacaag
     4081 taggaccaaa tgctccattt atatcattaa gacggaaaca tgaatttcga ttctaatttt
     4141 tatgtcctgc ttggctacat tttgtactcc catgtaaagt atcgaatcaa gaatcatgat
     4201 ttagaaacat agcggtaatt tccaaattgt atagataaaa aggactattc catctctatt
     4261 tagtagagat aaggccgaaa gtccaaaaac tagatatact agcgctattg tgtcaaatca
     4321 tgtattgact tcgatcacac tttcaattat cttggtatgt agcctgtatt tgttaactta
     4381 tttacctgat caaatagcac aaggccaaaa cgcaacaagt cccgcacctt taataacgga
     4441 ccccaatttg aaggttgaat tgattgccaa gcatcttaat ttccctactg ccattgattt
     4501 tttaggaaat aatgatctca tacttgctga aaaaaatact ggcaatgtat ttaaagtaac
     4561 taatggtaac gttacaggac cgttactcca tatagacgtg ggagtcaaag acgaacgcgg
     4621 tttattgggt attgcctcat caggatatac aaataacagt ctccaagaaa atttgcctgt
     4681 ttatctttac catacgcaat gcataaagga taaagttgct gatacccaga attgtgaaaa
     4741 tcagatatct agatatgagt tagatagaaa aaacaatact ctcataaatc ccaaactgat
     4801 cgtctcctta cctggcttac caggaccaag ccataatgga ggtaaacttt tgatggataa
     4861 ggatggaaat cttcttgtta ctgtgggaga tttgcaatca acaaagttta atcaaaacaa
     4921 gacgggttat gacaccgaag ctcagaatat tttaaatgga actgctcctg atggtcgtgc
     4981 gggaatattg cgaattactc aagatggtaa atctgttgga tctggaattc ttggagatga
     5041 ttctcctctt aatctttatt atgcatatgg aataaaaaat agttttggaa taggtattga
     5101 tccgctcact gacaatgtgt gggatacaga gaatggtccc caatttggag atgagattaa
     5161 tctcgtcaaa ccaggattca atagcggatg ggaaaaagta caaggaattt ggaagttgaa
     5221 tcagactaga gagaaagaga atgtatatga cgaatccaaa aacgaagtag aatttgttaa
     5281 tttcgatggt aaaggaaaat atagtcctcc agaatttgta tgggacaaac ccgtagcacc
     5341 aactgccata gtatttttga actctaaaaa attaggcgaa cagtatgaaa atgacatttt
     5401 tgtaggttct gcaaaaaaag gaacactttt tcattttgat ctaaatccag atagagaatc
     5461 tctggatcta agtggtgatc taaccgacat gctgtacagt aagaaggagg attcaagtag
     5521 cattgtattt ggagaaaatt tcggagttat aactgatcta aaggttggcc ctgatggtta
     5581 tttgtatgta gtatctgctt cacgaggaac tgatgaaggg gctatttaca gaatagctcc
     5641 aatatcttag tttcaagcta cggtaatgga tgacgctatg ggtttgaata cctgtatacg
     5701 gaagttacca gtatctgcta cataaactag acct
//
LOCUS       DASPFX010000406         3000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_2113525, whole genome shotgun sequence.
ACCESSION   DASPFX010000406 DASPFX010000000
VERSION     DASPFX010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2113525"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..659)
                     /locus_tag="VD694_08710"
     CDS             complement(60..659)
                     /locus_tag="VD694_08710"
                     /inference="COORDINATES: protein motif:HMM:NF015324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007034 - vacuolar transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Snf7 family protein"
                     /protein_id="HXW12827.1"
                     /translation="MQHHTQLQNDLSNAAQVISNQITKLNKLSKKFEVMDTHFRKQIV
                     DNIKGGNNLRAKALASELVNIHRVHHTTRNMIMSLEVVALRSTIIGEFTVIMDTINPT
                     IDLIKDIEKDISMVIPTAHEVLNDVTNASSEILNYQVNPEVKIPMHVDEDALRILSEV
                     EQSVEEETRQKLPDIPATINVVKNKNEYDTLLEENEVMI"
     gene            complement(824..1210)
                     /locus_tag="VD694_08715"
     CDS             complement(824..1210)
                     /locus_tag="VD694_08715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide-binding protein"
                     /protein_id="HXW12828.1"
                     /translation="MEKNSSTHERFIQTANNGKILANKCNNCGKVMLETMYYCSECSK
                     SDFEFIELPGIGTVVTHTIQAVAPEGFEDINSYAWVVFKLQDAPISASGFLPGIKTPE
                     DLPIGSAVKVKGYDAKHGLTLEKQGN"
     gene            complement(1226..2383)
                     /locus_tag="VD694_08720"
     CDS             complement(1226..2383)
                     /locus_tag="VD694_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HXW12829.1"
                     /translation="MVNSVCVLGAGSTKYGKLSESIIELGLDAAKNAIDSAGITPKDI
                     QAGYISNVFGVADKQVHMAPVLMSNLGIPHVPGLTIESACGSGSVMFREAYANVAAGF
                     YDCVLAVGVEKVTHTGTTLSTTLFSYCSDFFYEGGNGASFPGLFASIARAYLHKYKAT
                     EEDLAYVAIKNHENGLLNPKAHIRKSITVDDVLNSPVVASPLKVYDCCPFSDGASAVI
                     LCTEEFAKKVGNNYVKVIGSGRGGSPAAVQSREDITTIPSTIIAANQAYKMAGVTPKD
                     IDFAEVHDCFTIAEIIDIEDLGFFKKGTGGIAAREGITKRTGEIPINPSGGLKSKGHP
                     IGATGVGQVVEVYEQFTGMAGERSVKDAEIALTHNFGATGASAAVHVFQKV"
     gene            2565..>3000
                     /locus_tag="VD694_08725"
     CDS             2565..>3000
                     /locus_tag="VD694_08725"
                     /inference="COORDINATES: protein motif:HMM:NF013878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HXW12830.1"
                     /translation="MDAKGYQLIICEKPLAAKRISQVLGSKKIIEKKHSHGIVVFEIT
                     SDKNKRFVVCSALGHMYGLIPLEKNRKKYPIYETVWSPRHSTIANEKKRILETLKVIS
                     RISEGAHGFIHACDYDLEGELIGYNILEYTCKHKYQQSQRAKF"
BASE COUNT          891 a          608 c          521 g          980 t
ORIGIN      
        1 aatagttatt gactaacagt acaaaacaat ttacctacaa tgcataagaa aaatcaaatc
       61 tatatcatta cttcgttttc ctctagtaag gtatcatatt catttttgtt tttcacaaca
      121 ttgatagtgg caggtatgtc aggtagtttt tgtcttgtct cttcctcaac actctgttct
      181 acttcactca aaattcttag tgcgtcttca tctacatgca ttggtatttt tacttccgga
      241 ttaacttgat aatttagaat ttctgatgaa gcgtttgtaa catcattcaa tacttcgtga
      301 gccgtgggta ttaccattga aatatctttc tcaatatcct ttatcagatc tattgttgga
      361 tttattgtgt ccattataac agtaaattca ccaattattg ttgagcgtag agctacgacc
      421 tcaagggaca ttatcatgtt tcttgtcgta tggtgaacac gatgtatatt tacgagttcg
      481 cttgcaagcg ccttggctcg tagattgtta ccccccttga tgttatccac aatttgtttt
      541 ctaaagtgag tatccattac ttcaaatttc tttgagagct tgttcaactt tgtaatttga
      601 ttactaataa cctgagcagc attagaaagg tcattctgaa gctgagtatg atgctgcatc
      661 aagaaagtat tattttacat gaatgtaaaa ataattgtca gtgtctgtca acaaaagagt
      721 aacataaagc taatctaaca aatttctagt atatggacaa atctatttct acaatgatga
      781 gatgagataa agtcgtattc catatgacca aagaaagaaa aacttagttt ccttgttttt
      841 ctaaagtaag tccatgtttt gcatcatatc ccttaacctt cactgcagag cctataggaa
      901 ggtcttctgg tgtcttaatt cctggcagaa atcctgatgc ggaaattgga gcgtcttgca
      961 gcttgaacac cacccaagca taggagttta tgtcctcaaa tccttcaggg gcaaccgcct
     1021 gaatcgtgtg agttacgact gtaccaattc caggaagttc aataaattcg aaatcacttt
     1081 tggaacattc actacaataa tacattgtct caagcattac ctttccacaa ttattgcact
     1141 tatttgctag tatctttcca ttgtttgctg tttggataaa tctttcgtga gtactagaat
     1201 ttttttccac cgcaatgcac caagattata ctttttgaaa gacatgaact gctgcgctag
     1261 ccccggtggc accaaagtta tgcgttagcg ctatttcagc gtcctttact gatctttctc
     1321 cagccattcc ggtaaattgt tcgtaaactt ctacaacttg tcctacacca gtagctccta
     1381 ttggatgtcc tttggatttt agtcctcctg acggattaat tggaatctcc cctgttcttt
     1441 tagtaattcc ttctctggca gctattccac ctgtcccctt cttaaagaat cccaagtctt
     1501 caatgtcaat tatctctgca atcgtaaagc aatcgtgaac ttctgcgaaa tcaatatctt
     1561 tgggtgttac tcctgccatc ttgtacgctt gatttgctgc aataattgta ctagggatgg
     1621 ttgtgatatc ttctcgtgat tggacagccg caggagatcc gcctcttccc gatccgatga
     1681 cttttacata attgttacca accttcttgg caaattcttc agtacataaa attactgccg
     1741 atgcgccatc agagaatgga caacaatcat agacctttaa tggagatgct acaacaggag
     1801 agttcaacac atcgtccact gttatacttt ttctgatgtg ggcttttgga tttagcaacc
     1861 cattttcatg attcttgatt gctacatatg ccaaatcctc ctcagttgct ttgtatttat
     1921 gtagatatgc tctggctatt gaggcaaaca gtcctggaaa tgaagctcca ttaccacctt
     1981 cataaaaaaa gtctgaacaa tatgaaaaaa gtgtggtact caaagtagtt ccagtatgtg
     2041 ttaccttttc aactccaact gccaatacac aatcataaaa accagcagcg acatttgcat
     2101 aagcttctct aaacatcacc gaacctgagc cgcaagcaga ctcaattgtc aagccgggta
     2161 catgagggat cccgaggttg ctcatgagta ctggtgccat gtgtacttgt ttgtcagcaa
     2221 ctccaaatac atttgagata taacctgctt gaatatcctt tggcgtaatt ccagccgaat
     2281 caatagcatt ttttgccgcg tcaagtccca gctcaatgat actttcactt agtttaccat
     2341 attttgtact tccagctcca agaacgcata cactatttac catttatatt aaaaatatta
     2401 tcttgagaat ataaaaatgt tcgagtaatt attggataaa taactcctct tcaaagatgc
     2461 ccggagtagt agttgattgt aaatttctcc taggttttgc atatgaaccc aaaatctaaa
     2521 ttattatcct ctgtagaata tttcaattgt cggaagataa tgttatggac gccaaaggtt
     2581 atcaacttat aatttgcgaa aaaccactgg cagccaagag gatatcccaa gtattgggat
     2641 ctaaaaagat catagagaaa aaacattccc atggtatagt tgtgtttgaa attacttcgg
     2701 acaagaataa acgatttgtt gtatgttcag ctctaggtca tatgtacggc ctaatcccgc
     2761 tggagaaaaa tcggaaaaaa tatccaatat atgaaactgt atggtctcct agacattcaa
     2821 ctattgcgaa cgaaaagaag agaatcttgg aaactttgaa agtgatatca aggatttctg
     2881 aaggcgctca cgggttcata catgcatgtg actacgacct tgaaggcgag ctaattggtt
     2941 ataacatact tgaatatact tgtaagcaca agtatcaaca atcacagagg gcaaaatttt
//
LOCUS       DASPFX010000407         3213 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1626138, whole genome shotgun sequence.
ACCESSION   DASPFX010000407 DASPFX010000000
VERSION     DASPFX010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3213
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1626138"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1030)
                     /locus_tag="VD694_08730"
     CDS             complement(164..1030)
                     /locus_tag="VD694_08730"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HXW12831.1"
                     /translation="MCGDSQNKVGNVLHETCPVDPSSVGTPAANFSKSKTLRLAVGGD
                     IDSNQGLTTQLEIANHYNVQVLIIPGDLEYTNGRQILSNFQSHGFTKENTDIVVGNHD
                     SGKDIQAWLSNNRTFGEVKFDFLGDRLALFNIDANIQFDCSSPQFKILKSQIESSKAL
                     FKFAVVHQPFITVKSDHPPNGEFNCYDPLFRETKIDGVLQAHNHNYQRFNIDGLFYGV
                     YGTGTQDTGSGMYPLESTNWEGNACLQCITGKNGITIIDLQLNNNSKHFVGWFLGMSR
                     EVLDDFEKNIPS"
     gene            complement(1508..2311)
                     /locus_tag="VD694_08735"
     CDS             complement(1508..2311)
                     /locus_tag="VD694_08735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12832.1"
                     /translation="MSLVISYSTTSNILLTNTFAQVNDPLQISNDQVKDNYLLYIKEV
                     TKKGTNSDCQKGLGVGVLQGDDIICNPGLENLEEKAKLDDQVVGKLSENIDKDKQVLA
                     DKLEKLRERMEKAISEEEEEGVILPDDVRKKIDLDDIKAMQDHKTKEGPECRGGDVLD
                     GASNAKDLKVLAECQDAIGDVMHTKKMDDGDYKFLLKLDDQYKFLINDHNDEKTDGLL
                     VVEVVPKDQDIQSIYLPEEGDKVHVWGAWVTDEPKGWHEIHPTWQVVKQ"
     gene            2542..3144
                     /locus_tag="VD694_08740"
     CDS             2542..3144
                     /locus_tag="VD694_08740"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HXW12833.1"
                     /translation="MQNKTLHLVIITGALLSLFLVSVTSSNSVYAQNKFRAKLDANNE
                     VPPVDSATEGVATFKLKDDAIKSKINITGITDISGAQIFMGKIGQNEDPIVDLLKTGE
                     KTNEAGGVSIKGNFTASDFEGSMKGKDLSVLQSAMAGNQTFVNIMTSEHPDGEITGHV
                     YPKGSTTGADDNTSNGDASEGVSEEQVDGSGDGTAEGNED"
BASE COUNT          990 a          595 c          564 g         1064 t
ORIGIN      
        1 taactttttg gtcaaaatag gttctgcagg ttctgaaaaa ggacaatttg aagaccctga
       61 acatttggct atcgacagcg atggaaatgt ctacatttcg gatcgaaaaa ataacaagat
      121 tctagagtat tcccaaataa acatcaatta gatttaggcg gccttatgat ggaatattct
      181 tttcgaaatc atcaagtact tctcgactca tacctagaaa ccatccaaca aaatgtttag
      241 aattgttatt taattgaagg tctattatcg taattccatt tttacccgtg atgcattgta
      301 gacaagcatt tccttcccaa ttggtggatt ctaagggata catacctgat ccagtatcct
      361 gtgttccagt accatatact ccgtagaaca agccgtcaat gttgaacctt tgataattat
      421 ggttatgggc ttgtaatacc ccatcaattt tggtctccct aaacaaggga tcgtaacaat
      481 taaactcgcc atttggagga tggtcgcttt tgacagttat aaatggttga tgcactactg
      541 caaatttgaa caatgccttg cttgattcaa tttgcgattt caagattttg aattgaggac
      601 tggaacaatc aaattgtatg tttgcatcta tgttgaacaa agcaagtcta tctcccaaaa
      661 aatcaaattt gacttctcca aaagttctat tgttacttaa ccaagcctgt atatctttgc
      721 cagaatcatg gtttccaaca acaatatcag tattttcttt tgtaaatcca tgagattgaa
      781 aattggacag tatctgtctt ccattagtat attcaagatc tcctggtatt atcaatacct
      841 gaacattata atgattggcg atttccaact gcgtcgtcaa tccttgattg gaatcaatat
      901 ccccacctac tgcaagtcgc agagtttttg acttgctgaa attagcagca ggagtgccta
      961 ccgaagaagg atcaacagga caagtttcat gaagtacatt tccaacttta ttctgactat
     1021 cgccacacat ttcttgtgaa ctcgtattag tcgttgtagg cgtggagact actggtgatg
     1081 cgacataaat aggataaact aatgataaac aactcgtaaa gattatgaaa ataataaatt
     1141 tcaaaagtac aaactgtagt ttgtttttag tataaaaatt ctttagtaca agtgttaaat
     1201 tgaaatatta aatgtatttc acttagacgt ttgtattact ataatatgga acaatattgt
     1261 ttttaatata tgaatttcgg agattttgcg actagttttc aggtttatgg aacaatttgc
     1321 aacctatttt gaccgcttat gaccaacatg gtaattcatt atcactacgc aataaattat
     1381 aaaaactgat gggagcctga tgaattaaca gtacaaagag gcatagctcc aatcagtggt
     1441 aagtaacgta attaaagtat aggttgaatc aatgataaat aattttcttc tttttaaaaa
     1501 atgaaaatta ctgttttacc acttgccatg tgggatgtat ttcatgccat cccttgggtt
     1561 catcagtgac ccacgccccc cagacatgaa ctttatcacc ctcttctggc aggtagatgc
     1621 tttgtatgtc ttggtccttc ggaaccactt cgacaaccaa caacccatca gttttttcgt
     1681 cgttatggtc gtttatcaaa aatttgtact gatcatccaa ttttagtagg aatttgtagt
     1741 ctccatcatc catcttttta gtatgcataa catcgccaat ggcatcttgg cattccgcta
     1801 atactttaag atcttttgca tttgaagcgc catccaagac gtctccgcct ctacattctg
     1861 gaccttcttt tgttttatga tcttgcattg ctttaatgtc gtccaaatca attttcttac
     1921 gtacatcatc aggtaatatt actccctctt cctcttcttc agaaattgcc ttttccatcc
     1981 tctccctcag tttttctaat ttgtccgcaa gtacttgttt gtccttgtct atgttttcgc
     2041 ttaatttacc tactacttgg tcatccagtt tggctttttc ctctaagttt tcaagacccg
     2101 gattacaaat aatgtcgtcg ccttgaagta caccaactcc taatcccttt tggcaatcag
     2161 aattggttcc tttttttgtc acttctttaa tgtataagag ataattatct ttgacctgat
     2221 cattacttat ttgaagagga tcattaactt gggcaaaagt gtttgttaat aatatgttac
     2281 tagtagtgga gtaagaaatc acgagtgaca aagaaagggc cgaaattata aagtattttg
     2341 taaaattact gcattgtttg caaaaatcca tgatactatt gaaaatatca tcttaataag
     2401 ttcgcctatt tggaattcta agaaattacg aaaatatttc gagattatta tttcattacg
     2461 gcatttctat atgatactct aattagacat ccggctttag ggtctattaa tatttatatc
     2521 caatcggtag tcaatttgta tatgcaaaac aaaacactac atttagtcat aattactggt
     2581 gcgctattat cattgttcct tgtgtcagtg acaagctcga attcagttta cgcacaaaat
     2641 aaatttaggg cgaaacttga cgcaaataac gaggttccac ctgttgattc ggcaacagag
     2701 ggagtagcca cattcaaact aaaggacgat gcgataaaat ccaagattaa cataaccggt
     2761 ataaccgata tttcaggcgc tcaaatattt atgggtaaaa ttggacaaaa tgaggatcct
     2821 attgtcgact tattaaaaac tggcgagaag actaacgaag cgggaggagt ctcaattaaa
     2881 ggaaacttta ctgcgtctga ctttgaaggc tctatgaagg gaaaagatct gtcggttctt
     2941 caatccgcaa tggctgggaa tcaaacgttc gtcaacataa tgacaagcga gcatccagat
     3001 ggtgaaatta caggacatgt ttatcctaaa ggcagtacaa caggagcaga cgataatacc
     3061 tctaatgggg atgctagtga aggggtttct gaggagcagg tagatggatc aggtgatggt
     3121 actgctgaag ggaacgagga ttagtttaat ttcttaactt tttattttta tctttatcct
     3181 ctaaccgttg acacaaactt gatatagtat cca
//
LOCUS       DASPFX010000408         3774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_690141, whole genome shotgun sequence.
ACCESSION   DASPFX010000408 DASPFX010000000
VERSION     DASPFX010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_690141"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            380..625
                     /locus_tag="VD694_08745"
     CDS             380..625
                     /locus_tag="VD694_08745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12834.1"
                     /translation="MSDRIAKDRDIELENIIGNLMIAEYQVDKLQSRLSERVGGLGSG
                     SNKKSSSFVFKKNDKWYRVTLSVEEMTDINIIDEDMA"
     gene            complement(701..1396)
                     /gene="pyrH"
                     /locus_tag="VD694_08750"
     CDS             complement(701..1396)
                     /gene="pyrH"
                     /locus_tag="VD694_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HXW12835.1"
                     /translation="MNKLVTKKKVVIKLSGSIFGSNAKSKSIKNYGMMITKLNKHVQP
                     VVIAGGGNIARHYIDLARELGSDEASLDLLGIEVSRLNAKLLLHSIRSNVYPKVPTNL
                     EELSIAAETGEPVILGGLHPGQSTNATSALVAEKVKARIFVNATDVNGIYDSDPNINR
                     HAKVFKRVTVDKCIEVLGKNSSMAGKYDLMDMVALKIIERSRIPTVIIRASVTNIINV
                     IESCTKIGTRILV"
     gene            complement(1404..2654)
                     /locus_tag="VD694_08755"
     CDS             complement(1404..2654)
                     /locus_tag="VD694_08755"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HXW12836.1"
                     /translation="MKLIGEITDPVHRYIGFSAVERDLIDTSVFQRLRRIRQLAGAHL
                     VYPSAQHSRFEHSLGTMHVAGYAGENLLRKGFIENEDNIQQLRLAALLHDVGHGPFSH
                     LFEEVLESKYSMTHEDMGKKVILESEIGDVLSEHGFTPVDICKLSFGQSKSSFLNEII
                     AGSLSADIMDYLPRDSLFTGAEYGKIDYHRLIASFEVVATGHLAINKSALYSFESMLI
                     SRYEMFKAVYFHKTVRSAEVMLLHSLAQADNYLQITKISLDKFLNLTDEITLDQICSM
                     DKNENAAKLARDYRDRRLLKCVYEKFLHKQDRLYNKMSISTLEELRLRICDIAGVDEN
                     TVFVDASRAPSMPLTPSKEEINSIILVDKEWAYDTPISEIPVISSITGFLDMLRIYTT
                     AESRNAVTSTIDKVLGDPLKGQQR"
     gene            complement(2768..3298)
                     /locus_tag="VD694_08760"
     CDS             complement(2768..3298)
                     /locus_tag="VD694_08760"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HXW12837.1"
                     /translation="MFNSKLRVILIYYNDYYVVPASEMTSTSSFSYTPRQRNEEGFSG
                     RVQYQNATMTDCHQMKKKIMVVDDEDDVNVTLRIVLEEQFSVDVFNDPFEALDNFKPG
                     LYDLLLIDIRMPKMNGLVLCNKLQKIDSKVKVCFITAGEMVFDFALRKFPGCTILKKP
                     IDNYDLLKEVTRMTNT"
     gene            complement(3453..3707)
                     /locus_tag="VD694_08765"
     CDS             complement(3453..3707)
                     /locus_tag="VD694_08765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12838.1"
                     /translation="MNTIKRNSYINRLSELQSALYILRCVSEGKNEDQIVERFIGDGQ
                     LVKTWLAVLGDIRLVERNFVDELVITKEGRKYLERYNPHW"
BASE COUNT         1118 a          778 c          660 g         1218 t
ORIGIN      
        1 gaagctagat tattagccag ggccagttaa gtactattaa actctcacgc ccaaaaatat
       61 taaaatatca ctaatgatat ctagtcacac tactatttca ttgacgagta atacggtata
      121 tcatacaata ttctatttga aggatacggt cataaaattg gatgaatatc actagattct
      181 tgttcaacgt gtagttatca aaaatagcta tcatagatat tatattatgg attcgtatac
      241 tttcggagag caggtataac agatccaaga ctgccaattc ttgttcattt tcttttttat
      301 attgccggaa acctaatctg attgaaatca cttaaaatca taaataatac ttaaaaccta
      361 agtacccaaa gtggatgtta tgtctgatag gatagcaaaa gatcgtgata tagaattaga
      421 aaacattatc ggaaacttaa tgatcgctga atatcaggtc gataaactgc aatctagatt
      481 gagtgagagg gtaggaggtt taggatcagg aagtaacaaa aaatcctctt catttgtgtt
      541 taagaaaaat gataaatggt atagagtcac gctttctgtt gaggagatga ctgacataaa
      601 tatcattgat gaagatatgg catagatgga ctattaatga atcctcttgc ataaatatca
      661 atattagcta aatatattaa gtaggttttg ccactgcatt ctaaaccaat attctagtac
      721 ctattttagt acaagattca attacgttaa tgatgttagt aacgctagct cgtattatca
      781 cggtagggat tcttgagcgt tctatgatct ttaaagcaac catgtccatc agatcgtact
      841 ttcctgccat tgaactattt ttgcctagta cctctatgca tttatcgact gtgactctct
      901 tgaacacttt tgcatgtcgg ttgatatttg gatcagaatc ataaatacca ttgacatctg
      961 tcgcgttcac aaaaatccga gctttaacct tttcagcaac caacgcagaa gttgcattag
     1021 tgctctgacc aggatgtaat cctcccaaaa tcaccggttc tcctgtctca gctgcaattg
     1081 agagttcttc gagatttgta ggtacctttg gataaacatt actacgtatt gaatggagca
     1141 gcaacttggc gttaagtctc gaaacttcta tgcccaataa atccagactc gcctcgtcac
     1201 tcccaagctc ccgtgcaaga tcgatataat gtcgagcaat atttcctcct cctgcaataa
     1261 ctaccggttg cacatgttta ttcaatttag ttatcatcat tccataattt ttaatggatt
     1321 tcgactttgc attactacca aaaatgctgc cgctaagttt aatgactacc tttttttttg
     1381 tgactagttt attcattgta cttttacctt tgttgaccct tcaacgggtc tccgagcact
     1441 ttatcgatag tagaagtcac tgcatttctg ctctcagcag ttgtgtatat tcgcaacata
     1501 tctaaaaatc ctgtgattga actgatgacg ggaatttctg agataggcgt atcatatgcc
     1561 cattccttgt ctactagaat aatggaatta atttcttctt tagatggagt aagtggcatt
     1621 gaaggtgctc tggatgcatc cacaaaaaca gtattctcat cgactccggc aatatcgcat
     1681 atgcgcagtc ttaactcttc aagtgtcgag atgctcatct tgttgtacaa cctgtcttgc
     1741 ttatgtaaaa atttttcata gacacatttc aataagcgtc tatctcggta gtccctggct
     1801 aactttgctg cattttcatt cttatccatt gaacaaatct gatcaagagt aatctcatcg
     1861 gttaggttaa ggaatttatc aagtgaaatc tttgtaattt gtaaataatt atctgcttgt
     1921 gctaacgaat ggagtaacat tacttcagcc gatctaactg tcttgtggaa atagactgct
     1981 ttgaacatct cgtatctaga gataagcatt gattcaaatg aatatagtgc agatttgtta
     2041 attgccaaat gtcctgttgc taccacttca aaggaggcta ttagcctatg gtagtcaatc
     2101 ttgccgtatt ctgctccagt aaacaggcta tcccttggca aataatccat gatatctgcg
     2161 gataggctgc cggcaattat ctcatttaag aaacttgatt tagattggcc aaatgatagc
     2221 ttgcatatat ctacaggtgt aaacccatgc tcgcttaaaa cgtctccaat ttcactttca
     2281 agtatcactt ttttccccat atcctcatgt gtcatactgt acttactctc caagacttct
     2341 tcaaaaagat gggaaaacgg gccatggcca acatcatgca ggagagcggc taacctcaat
     2401 tgctgtatat tgtcttcgtt ttcaatgaaa cccttcctca gaaggttctc tccagcgtac
     2461 ccggcaacat gcattgtccc taacgaatgc tcaaatcggg agtgctgtgc actgggatag
     2521 acaaggtgag ctccggcaag ttgtctaatc cttcgcaacc tctgaaatac cgaagtatca
     2581 ataagatctc gctccacagc actgaaaccg atatatctat gaactgggtc cgtaatttcg
     2641 ccaataagct tcatggagcg tacctcataa tcggggaatg ttctttaata gattatcttc
     2701 taaaccaacg tctcgcagta atgggtaatt aaaatatctt ctaccttatt ttgactcttt
     2761 ttgagcctta cgtatttgtc attcttgtaa cttctttcag aagatcgtag ttgtcaatag
     2821 gctttttgag aatggtgcaa cctggaaatt tacgcaaggc aaaatcaaat accatctctc
     2881 ccgcagttat aaaacacact ttgaccttac tatcgatttt ctgaagcttg ttgcacaaaa
     2941 caagcccatt catctttggc atcctgatat caatcaagag aagatcgtac aaacctggtt
     3001 tgaaattatc cagtgcttcg aatggatcat taaaaacatc tactgaaaat tgctcctcga
     3061 gtacaatcct caaggtaacg ttcacatcgt cctcatcatc aacaaccatt attttcttct
     3121 tcatctgatg gcagtctgtc attgttgcat tttgatattg tacgcgaccg ctgaaacctt
     3181 cctcattacg ttgccgcggt gtgtacgaaa acgatgaagt cgatgtcatt tcggaggcag
     3241 gtaccacata ataatcattg taatagataa gtattacccg caatttggaa ttaaacattg
     3301 gcaatacata cgggcacaaa gtgaaaccgt ttaaaggctt taaatctcgc gaattgactt
     3361 aattattcct tttttagttt ttcatgattg gctggcattg gcattcccga gcttcccccg
     3421 ctaaataagg ggctcaatca agttagagca gcttaccagt gcgggttata acgctcgagg
     3481 tactttcggc cttctttagt aataacaagc tcatctacga aatttcgctc tactaaacga
     3541 atatcaccta gaactgctaa ccatgtctta acaagttgtc catctccaat gaatctctca
     3601 actatctgat cttcgttctt gccctctgat acacacctaa gtatgtacaa cgctgattga
     3661 agctcagaga gtctattaat ataggaattt ctttttatcg tattcaccct cttatttccc
     3721 ttagcgatat aatacagaaa gttgatagtt attacgtcta gagcttaata gcgt
//
LOCUS       DASPFX010000409         4489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1430195, whole genome shotgun sequence.
ACCESSION   DASPFX010000409 DASPFX010000000
VERSION     DASPFX010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4489
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430195"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..707
                     /locus_tag="VD694_08770"
     CDS             174..707
                     /locus_tag="VD694_08770"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HXW12839.1"
                     /translation="MRISTELAKAINDQISYESSATQAYVAIGSWCERIGYSGSAAFF
                     FEQAAEENTHMLKFVHYLNNSGAEAIIPATEKPQGNFDSLENTFQAGLKSEQTVTKLI
                     NNLVEIAEKEKDRATYSFLQWFVSEQIEEETLFGTILQKFEIIGRDKLAMYQIDQSLA
                     SIRTETMAKGNSQQPAN"
     gene            complement(1263..2135)
                     /locus_tag="VD694_08775"
     CDS             complement(1263..2135)
                     /locus_tag="VD694_08775"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HXW12840.1"
                     /translation="MSKDNFDSEVFKINQKHSWDSVAAGWQKWWKTIENGAQTVSDKL
                     VELAQIRAGQRVLDIATGIGEPAITASKIVGQKGYVTATDISPEMLAIGQERARSLGL
                     QNIIEFVQSDAENLKLREDDKFDAILCRWGLMFLPHLDTALSNIHDKLISGGRLAAAV
                     WSKPSKVPFISLSMDTARKHLGTLPGQGLPGPLSLADVDSLKKSFDKAGFVDIRTEKI
                     TVIFDFDSAEDYTKFNQDIVAPIRTILSKETETKKQQVWDDVTEQARLKYSDPNSGRV
                     RFVNEAICIVGLNK"
     gene            3077..3625
                     /locus_tag="VD694_08780"
     CDS             3077..3625
                     /locus_tag="VD694_08780"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HXW12841.1"
                     /translation="MLILTKAQYYKSGFVCRFDPVLLLVLNQKYIEHCCINSMKQISD
                     IMSKKVETIQTSDSAKDAAKKMLDKNVSSLVIIDETGQSVGIITERDITRGVCTHDVL
                     SKEFMIHHLMTAPLTTIDSNSSVELAANLMLQKKVRHLIVKDGNKTVGIVTATNFIDY
                     LNEKLDPIDPNAKMLKTLKDEI"
     gene            4071..4391
                     /locus_tag="VD694_08785"
     CDS             4071..4391
                     /locus_tag="VD694_08785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12842.1"
                     /translation="MPNPPVPSELQASCDAGNFSSTACNIAGELILLSPSDIALYGLA
                     SNEPMVIEQTIELLDNVTLNKVLQSITTEELVILRQKITNQTFDNIVPEPLRERLMNR
                     LSQN"
BASE COUNT         1502 a          806 c          807 g         1374 t
ORIGIN      
        1 tgaagcaaaa aatatccaat atgactggga tctagtaact aaatctaaat tagctttttc
       61 ataatattca attcttgatt ggacgatggt atttttcacc atgttccctt tcctcaaaac
      121 atcatcaaat aattccaaaa atatagatat acgagaatgt atagattgtt acaatgagaa
      181 tatctaccga acttgcaaaa gcaattaatg atcaaatttc ttatgagtca tcagcaactc
      241 aggcatatgt tgcaatcgga tcatggtgtg aaagaattgg atatagcggg agtgcagcat
      301 tcttttttga acaagcagct gaggagaata cacacatgtt gaaattcgtt cactacctta
      361 ataattcagg agcagaagcg attattcctg cgacagaaaa gccgcaaggc aattttgatt
      421 cattagaaaa tactttccag gcaggtttga aaagcgaaca aacagttaca aaactcatta
      481 ataatctggt agagattgcc gaaaaagaaa aggatcgtgc tacatattca tttttacaat
      541 ggtttgtaag tgaacagatt gaagaagaaa ccttgtttgg gactattctt caaaaatttg
      601 agataattgg aagagacaaa ctagcgatgt atcaaatcga tcaatcattg gcctctatca
      661 ggacggaaac aatggccaaa gggaattctc aacaaccagc aaattagact gccagtcctt
      721 agaatatttg ttgcattatt taattgcaaa gtagaatgat ctctttattg aaaacaggtt
      781 tgtagagcta ttgccaatcg ataaagaatt aggtgggcat agacatgaaa tagaaactgg
      841 aaatataagg aaaggtaaat agatacttta ttattagtaa ttccaaaaaa atatgatcat
      901 aattctgaga acaataaatt ttaacataaa gtcgtatact gtatatgaga aacagttact
      961 ttgagattca acgctatata caattcctgg accttgagta tcggacatat ttaaacagtc
     1021 gtttctttct ccggtgtgag aatcatgtat gtagaataaa tattgcatca tgttattttg
     1081 agttggctaa tgactagtct ggagtcgggc caaacggcat ctaagtcact catctatgga
     1141 aacggcgcga gtcatcaaat tccgtcctac ccggcatgta tctcgttgac ccgcgatact
     1201 aaagtagctg ggtaggatca aatattattt aaataattga acttggacgt tgttgctgag
     1261 gactatttgt tgagtcccac tatgcatata gcctcattaa caaatctaac acgcccgcta
     1321 ttaggatctg agtatttcag cctggcttgt tcagtaacat catcccacac ttgttgtttt
     1381 ttagtctcag tctccttaga tagaattgtg cgaattggtg caacgatatc ctgattgaac
     1441 ttggtgtaat cttcagctga atcaaaatca aagatcaccg taatcttctc agttcgtata
     1501 tctacgaatc ctgctttatc aaaagatttc ttgagtgagt ccacatcagc caaacttaac
     1561 ggacctggca atccttgacc aggtaacgta cctaggtgct ttctagcagt atccatagat
     1621 aggctgataa atggcacttt ggatggtttg gaccatacag ctgccgccaa tcttccgccg
     1681 gaaattaatt tgtcatgtat attactcaat gcagtatcaa gatgtggtag aaacattagt
     1741 ccccatctac aaagaattgc atcaaattta tcatcttctc tcagtttcag gttttctgca
     1801 tcactctgaa caaattctat gatattctgc agacccagag atcttgccct ttcttgcccg
     1861 attgctaaca tttctgggga tatatctgta gcagtaacat accctttttg acccacaatt
     1921 ttacttgcgg taattgcagg ttctccgata cctgtcgcta tatctaacac tctttgtcct
     1981 gctctaatct gtgctagttc aactaattta tcactaaccg tttgtgcccc attttctatc
     2041 gttttccacc acttttgcca tcctgctgct acactatccc agctatgttt ttgatttatc
     2101 ttaaacactt cagaatcaaa attatccttg ctcaatacaa ttcattattg gtttacaaac
     2161 cttaattaaa atttctatct cgcaatatac ttagatggcc tacgatggtg gcctgttata
     2221 agtgagaata ttctatgcct taacagaatt aatcgagggt catatacaat tacagataaa
     2281 gtatacaggg attggcttca actaaaattg tacttgataa agttaaaaat ttgagtgaaa
     2341 atgaaggaat atttctaatt tgtgataagt gtctctggaa tgccacttgt cttattgcgt
     2401 tttacaagca aaagggtaat tgaaaatggt aacttttgtc cagtttgcaa tcaagaccaa
     2461 ttatctagct tcccgttgaa tgcaaatgat ttcacaaatg ccattgttcc aaaaaaggta
     2521 atttagacca aagcagtatg tagcctaaat aagatggtcc aaagaccatt atattcctag
     2581 tatgatatgt gtcacatggt tacacatact ttggcataat gggaatggta actcaatttt
     2641 tctacatact atcattgata atcatgaatg aaaaattcta ctgaagttag gtaatgtcga
     2701 tagctccaat tctttagtaa caaagtttca aaaagttctt atcatttaca ttgtatataa
     2761 tatatcaata cggatcttgg acggatcttg gagtaggagg atcgtataat gatgattgca
     2821 tgcatcatct acaagtacac ccccgttctc caagtccgcc agaggttgca ggttgtttag
     2881 ggaaattcaa aattttcggt attgtggtac tagtaattca ttccttgaat tatgcgagaa
     2941 taagaaaacc aggcaggatt agcatggctg agtgatgaac aagaaacaac caataatctt
     3001 gcctgcagcc tgtaagccaa aataataaaa ccacattaaa tataaaagga cttggttgaa
     3061 atgttctagc aaattcttgc taattctgac taaagcacaa tattacaaga gtggatttgt
     3121 ttgcagattt gacccagtct tactcctagt attgaatcaa aaatatattg aacattgttg
     3181 tattaactct atgaaacaaa taagcgatat tatgtcaaag aaagtagaga cgattcaaac
     3241 atcagatagt gcaaaagatg ctgcaaagaa aatgttagat aagaatgtca gctctcttgt
     3301 aataattgat gaaactggac aatcagtagg aatcattact gaacgtgata tcacaagagg
     3361 cgtctgtacc cacgatgtgc taagtaaaga attcatgata catcatctaa tgaccgcacc
     3421 attaactaca attgattcta attcttctgt agagttggct gcaaatctaa tgttacaaaa
     3481 gaaggtaaga catcttatcg ttaaggatgg aaacaagaca gtaggtattg taactgcgac
     3541 aaactttatc gattatttga atgaaaaact agatccaatc gatccaaatg cgaagatgct
     3601 caaaacacta aaagatgaaa tatgacataa catcagacgc gattgatgta tgttacatta
     3661 tcagatttaa taaatcgttg agggtgatat cttaaagccg attatctgaa gatctagaaa
     3721 gtagatgatg gatttttgca tctgactgct tctgcaattt atgggatgac tctgcgacca
     3781 aattctttac tggatctcat gctaacccaa taagatagtc gatgctgtag agcctgaact
     3841 gctatttgaa atgtgcaatg tcaatgtgaa ttagaaaaat tgacatatga aacactaaag
     3901 tcaatgactt caagtctcaa agttataaac aagataattg gctgctcaga aaatgccgaa
     3961 aaactatatt atctagacta ttagaataga tggtgttgaa aattctttta ggtctattta
     4021 ttgtattcct tttcccaatt atccaagcat atggagcttc gtatacaacc gtgccaaatc
     4081 cgcccgtgcc cagcgaactt caagcaagtt gtgatgccgg taatttctca tccacagcgt
     4141 gcaatatcgc aggggaattg attcttctat cgccaagtga tattgccctg tacggtttgg
     4201 ccagcaatga gcccatggtg atagagcaga ccatcgagct tttggataat gtgaccttga
     4261 ataaagtact tcaaagtatc accacagagg aacttgttat actaagacaa aaaataacca
     4321 atcagacttt tgataatatt gtgcctgagc cattacgtga aagattaatg aatagattat
     4381 cacaaaatta gtaaatatcg tagtgacttc acatcgagga acacgtccat caaatggaaa
     4441 aacttgatca taaattacaa gacagaaatc ccaattatct ttgactcta
//
LOCUS       DASPFX010000410         4681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_833281, whole genome shotgun sequence.
ACCESSION   DASPFX010000410 DASPFX010000000
VERSION     DASPFX010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4681
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_833281"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2291)
                     /gene="leuS"
                     /locus_tag="VD694_08790"
     CDS             complement(<1..2291)
                     /gene="leuS"
                     /locus_tag="VD694_08790"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HXW12843.1"
                     /translation="MVDSVEKGSKSELDWASIEGKWRKRWTDDKIFETNPQSDKKKYF
                     LTVAYPYPNSPQHVGHGRTYTLADVHARYKRMNNYNVLFPMGFHYTGTPIVSMSQRIK
                     SNDRELIETFQQIYKIPEDVISDFKEPIKIASYFHQEIKQGMNEMGYSIDWRREFTTI
                     DKGYSKFISWQFRNLKKKGLVVQGSHPVGWCPQDQNPVSQHDTVGDIEPELIEYVLVK
                     FKFEDEYIVPTATLRPETIFGVTNLWINPDIKYVIAQVNNEKWIITKEAARKMEFLNA
                     TVTFISEINGSDLIGKYVIDQKRNQQVPLFPASFVDPNNGTGIVMSVPAHAPYDYQAL
                     IDLRKDDSTLRKYNITANVEPVKIIQTDTFSSNETSAAETIVTSYSIKDQNDPKLEDA
                     TNKLYSEEFHNGKLLPNIDEIGNLSVIDAREMIKAKIISLGIGTTMYELKNSVKCRCG
                     TTCVVKLLTNQWFINYGDKNWKKMAYELVNSMEILPEEIRQEFTNVIDWLKERACARK
                     SGLGTKLPWDNEWIIESLADSVIYMAYYPLSRHISNNQNLQEDEDKILADNLNDNFFD
                     YVLLGKNDRDIVATESKVSTQLLEKIKNEFEYFYPVDSRHSGRDLVPNHLSFFIFNHA
                     AIFSKDKWPKQIVVNGSVLMEGKKMSKSLGNIIPLRHAIGEYGADSIRLTMLASSEIL
                     QDSDFSFDLVKGIRSKLFDIYRNINTHLDIFGAQSSEDGDLEDAWISSRLQKVIMDTT
                     SAIEKFRIREALHIILYLMDNDL"
     gene            complement(2284..>4681)
                     /locus_tag="VD694_08795"
     CDS             complement(2284..>4681)
                     /locus_tag="VD694_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HXW12844.1"
                     /translation="KIVFEIPKNPLVVPQMCLRFNDIENVGLTGRHYTSFCMVGQTCN
                     ADAPGGYWKDRCIELDHSLLTDVLGIKSEEITYVEDVWMGAGAFGYSLEYYVRGLELG
                     NAVFTEFEGDENNYRTLDNKIIDMGAGLERLSWITLGSPTSYDATFGPIFKKLVDIIG
                     IDIDSKSEFLSRYFKKLSEKYSSYENDPRLLKTKIAQDLGLSYEDLEKIVLPFETLSI
                     IADHTRTLLFAISDGSLPSNVGGGYNLRIILRRTLALLARFGWKLDLQDVMDLHIEQL
                     EPMYPELKEHKNDIKTIMQIESDRYSSSKERMYSIASSMIASKKKPSVEDLIRMYESD
                     GITPDLLLETGVIDNIPPDFYVKLAELHTTHESTLVPVIETGSDIKPTRLLYYEDESI
                     REFDAKILKILKGKYLILDKTAFYPRGGGQEPDFGTINGIKVTDVIKQNDLVLHKMQA
                     PSNNLLDNKTVHGIVDNIRRRSITKNHSATHILNSAARNNLGSWVWQNSAFKDENYAR
                     LDITHHSALTKQEIKQIEKTANEVVQRNLPININVFERSNAEEKYTFRIYQGGAVPSN
                     HVRIVNIDGWDVEACGGTHVNKTGEIGLIKILKTERIQDGVVRLEFVSGNNALQYVQA
                     QDSQLLHIAQTLGSSREKLIESFDKVTVENDQMKRKYRMLINRFSENMATNVTHQATK
                     SKSGLKIYGTYDYEMGDDYYIALGEKSINIDPFLIYVALVQDQERIKVIVFVGDESRK
                     IVRASRIAKEISLKLGGTGGGGTDKFGQGGGKDKSKINECLKNLENLITNIDSSEKNG
                     "
BASE COUNT         1286 a          962 c          771 g         1662 t
ORIGIN      
        1 tctagatcat tgtccatcaa gtacaagata atatgcaatg cctctctgat tctaaatttt
       61 tcaattgcag aagtagtatc cataataact ttttgcaatc tgcttgatat ccaggcatct
      121 tctagatccc catcttcact actttgagct ccaaaaatat ccagatgtgt atttatgttt
      181 ctatagatgt caaataattt gcttctaatt ccttttacta aatcaaaaga aaagtcagaa
      241 tcctgtaata tctctgacga cgcaagcata gtgaggcgga ttgaatctgc tccatattcc
      301 cctatcgcat gacgcaatgg tataatattt cctaaggatt tggacatctt tttaccttcc
      361 attagtaccg aaccatttac aacgatttgt ttaggccatt tatccttgga aaaaattgca
      421 gcgtgattga aaataaagaa cgaaaggtga ttgggaacta ggtctcttcc cgaatgcctg
      481 gaatctactg gataaaaata ttcaaattca ttttttattt tttcaagcaa ttgggttgat
      541 acttttgatt ctgtcgcgac aatatctcga tcattctttc ctaagagaac ataatcaaag
      601 aaattgtcat tcaaattatc tgccagtatc ttatcttcat cttcttgcaa gttctgatta
      661 ttgctaatgt gtcttgacaa tggataatag gccatataga taacagaatc tgccaaactc
      721 tctattatcc actcattgtc ccatggaagc ttggttccaa gtccgctttt tctcgcacat
      781 gccctttctt taagccaatc tatgacgttg gtgaattcct gtcttatttc ctctggtaga
      841 atttccatgc tgttaactag ttcgtatgcc atctttttcc aatttttatc tccataattg
      901 atgaaccact gatttgttag tagcttgaca acacaagtag taccgcacct acattttact
      961 gaatttttca gttcatacat ggtagtccca attcctagac tgataatttt cgccttgatc
     1021 atttctcgag catctattac actcaaattt cctatttcat ctatattggg taagagtttg
     1081 ccattgtgaa actcctccga atagagcttg ttagtggcat cctctaattt gggatcgttc
     1141 tgatctttaa ttgaataact agtaacaata gtttctgctg ccgatgtttc atttgatgaa
     1201 aacgtatcag tttggattat tttaacaggt tcaacatttg cagtgatgtt atattttctt
     1261 aaggtactgt catccttcct taaatcaatc agagcctgat agtcataggg cgcatgcgct
     1321 ggaactgaca tgacaattcc agttccatta ttgggatcaa caaacgacgc ggggaacaag
     1381 ggcacttgtt ggtttctttt ttgatcaatg acatatttgc caattaaatc agagccgtta
     1441 atttctgaaa tgaatgtaac agtggcattt aggaattcca tctttcttgc tgcttctttc
     1501 gtaattatcc atttctcatt gttcacttga gcaataacat attttatatc gggatttatc
     1561 cataaatttg tcacaccaaa aatagtttcc ggtcttaatg ttgcagttgg aacaatgtac
     1621 tcgtcttcga acttaaattt tacaagaaca tattcaataa gctcgggttc aatatcaccg
     1681 acagtatcat gttgactaac cggattttga tcttgagggc accatcctac aggatgagag
     1741 ccttgtacta ccaagccttt cttctttagg tttctaaatt gccatgaaat aaatttagaa
     1801 tagcccttat ctatagtagt aaactctcgc ctccaatcta tggaatagcc catttcgttc
     1861 attccttgct tgatttcctg gtgaaaataa cttgctattt ttataggttc tttgaaatct
     1921 gatatgacgt cctctgggat cttgtatatt tgttggaatg tttctatcag ttctctatca
     1981 ttggatttga ttctctgtga catcgacaca ataggtgttc ctgtatagtg aaaccccatt
     2041 ggaaacaata cattataatt gttcatacgc ttatatctag cgtgaacatc ggcaagagta
     2101 tatgttcttc catgtcccac atgctgtgga gaatttgggt aaggatacgc tacggtaaga
     2161 aaatactttt tcttatctga ttgtggattg gtttcaaaaa ttttatcatc tgtccatctc
     2221 tttctccatt ttccctctat gctagcccag tcaagttcgg atttggaccc cttttcaact
     2281 gaatcaacca tttttttcac tagagtctat atttgtaatc agattctcaa gattcttcaa
     2341 gcattcatta atcttactct tgtccttacc tccaccttgg ccaaatttat ctgtacctcc
     2401 tcctccagta ccgcctagtt tcaatgaaat ttcctttgca attctggatg cccttacgat
     2461 ttttcttgat tcatctccaa cgaaaacaat gacttttatg cgttcttgat cctgaacaag
     2521 ggcaacatat atcaagaaag gatcgatatt gatacttttt tctcctaatg caatatagta
     2581 atcgtctccc atttcataat cgtaagtgcc atagatcttt aatcctgatt tggatttagt
     2641 agcttgatgg gtaacgtttg tggccatatt ttctgaaaat ctgttaataa gcattctata
     2701 ttttcttttc atctggtcat tttctactgt taccttatca aaggattcaa ttaacttctc
     2761 tctacttgat cccagggttt gggcaatatg tagcaattga gaatcctgag cttgcacata
     2821 ttgcaaagca ttattcccag aaacaaactc aagtctcact actccgtctt gaattctctc
     2881 agtttttagt atttttatca gaccaatttc acctgtctta ttcacatgag ttccaccaca
     2941 tgcttcaaca tcccatccat ctatgtttac tatcctcaca tgatttgagg ggaccgctcc
     3001 tccttggtag attctaaatg tatatttctc ttcagcatta gatctttcaa atacattgat
     3061 gttaattggt aaatttcttt gaacaacttc atttgcagtc ttttctattt gcttgatttc
     3121 ttgtttggta agagctgaat gatgagtaat atctagcctt gcataatttt catccttgaa
     3181 tgcagaattc tgccataccc aggagccaag attgtttctt gcagcggaat tcaatatgtg
     3241 tgttgcacta tgattcttgg ttatagatcg tctccttata ttatcaacaa ttccatgaac
     3301 agttttattg tctagaaggt tgttggatgg agcttgcatc ttgtgtagaa ctaagtcatt
     3361 ttgttttatg acatctgtta ctttgatacc gttaatagta ccaaagtcag gctcctgacc
     3421 tcctcccctt gggtaaaatg cagttttatc cagaattaaa tacttgcctt taagtatctt
     3481 gagaattttc gcgtcaaatt ccctgatcga ttcatcctcg taatataaca acctagtagg
     3541 tttgatatca ctaccagttt cgattactgg tacaagggtt gattcatgag tggtatgaag
     3601 ctctgctaac tttacataaa aatcgggggg tatgttatct atgactccag tttcaagtag
     3661 aagatcaggt gtaatgccat ctgactcata catccttatc aggtcttcga cacttggttt
     3721 tttcttggat gctatcatgg aactggcgat agaatacatt ctttcctttg atgaagagta
     3781 cctgtcagac tcgatctgca ttattgtctt gatatcattt ttgtgctctt taagttcagg
     3841 atacattggt tctagctgct caatatgtag gtccattacg tcttgcaagt cgagtttcca
     3901 accaaaacgg gccagcaggg caagtgttct ccttaatatt attctgagat tatatcctcc
     3961 tcccacattt gatggcaacg agccatcaga aattgcaaac aacaatgtcc gggtatgatc
     4021 agctataatt gatagcgttt caaaaggcag aacgattttt tccaaatctt cataagataa
     4081 gccgagatct tgagcaattt tggtctttag gagtctcgga tcattttcat aactagagta
     4141 tttttcagaa agtttcttaa aatatcgaga cagaaactct gattttgaat caatatcgat
     4201 accaattatg tctacaagtt tcttgaatat tggtccgaaa gtcgcatcgt aacttgttgg
     4261 actgcctaag gtaatccatg acagtcgctc aagtcctgct cccatatcta ttatcttgtt
     4321 atcaagagta cgatagttat tttcgtcccc ctcaaattca gtaaagactg catttcccag
     4381 ttctaatcct cgaacataat attccagtga atagccaaag gctccggctc ccatccaaac
     4441 gtcctcgaca tatgtaattt cttcagattt tataccaaga acatctgtga gcagactatg
     4501 gtctagctca atacatctat ccttccaata tccaccgggg gcatctgcgt tacatgtttg
     4561 ccctaccatg caaaagctcg tataatgtct accggttagc ccaacatttt caatatcatt
     4621 aaatctaagg cacatttggg gaactaccag tggatttttg ggaatctcaa acacaatttt
     4681 t
//
LOCUS       DASPFX010000411         2800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1260340, whole genome shotgun sequence.
ACCESSION   DASPFX010000411 DASPFX010000000
VERSION     DASPFX010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2800
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1260340"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..845)
                     /gene="uppS"
                     /locus_tag="VD694_08800"
     CDS             complement(54..845)
                     /gene="uppS"
                     /locus_tag="VD694_08800"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HXW12845.1"
                     /translation="MYGFFYHLLNNNWFYRFYERKLESQIRKDSLPNHVAIILDGNRR
                     WAKYNFFASKGAHAMGADKAEQLLTWIYDLKIKITTLYVLSIENLERDQKELEDIYSL
                     LASKLEKLYNDSRIHEREMKIKAIGNIDSLPQSIKDILFKLEKETNHYDLTFLNIAVA
                     YGGQQELVEAIRKIAHAVEKKELKISDINENSIDSYLYTSHLPQPEPDLILRTSGEKR
                     LSGFLLWQSAYSELVFMDVFWPEFRKIDLMRAIRTFQRRRRRYGK"
     gene            complement(903..2066)
                     /locus_tag="VD694_08805"
     CDS             complement(903..2066)
                     /locus_tag="VD694_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HXW12846.1"
                     /translation="MPKDLEYIRDKKSLDYGSLSTHYKRVLVVCIDRDDDLGTNGGVE
                     TPVFGRDQCISAGTRLAIEDPEDADSNAIFGAVKIYEELVTKGYESEVAVITGAYNRG
                     IEADEKISSELIQVLSKFKAEGVVIVSDGEDDETVIPLIQAMVPVISIQRIIIRHSRS
                     VEYSYAVFGKYVKMLVYDPRYSKFFLGVPGALLISSGFATIFGFTREALAIVLSVLGV
                     AFVMRAFDIDKSLSSLNRTTPSTFIRIFSTFAGIMIILVGISNGISDIPDGVIAKGAS
                     ISEIITTRAVVGGFVNGAITLIWIGLGTIFGGIFLSNWFKGSIRIFSDIIRLVILGTI
                     YIPAIQFTSVLTEKTNPFNLISSLLIGLAITLVATTFLFQYFRNKKGGEQLKH"
     gene            2271..2621
                     /locus_tag="VD694_08810"
     CDS             2271..2621
                     /locus_tag="VD694_08810"
                     /inference="COORDINATES: protein motif:HMM:NF016157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF424 family protein"
                     /protein_id="HXW12847.1"
                     /translation="MASNSNTDSSRNRSSRYALRTLRYQNSLMVNVCDLSLIDKQIQH
                     GDITIDIKKNYWMDKVADESEIESYLKKSSISNLAGKDTVDKAIELNLAKRSSVKYFS
                     DVPFLMIYKFRQSY"
BASE COUNT          917 a          532 c          470 g          881 t
ORIGIN      
        1 atgttgtggc attgataaca ctcttggtaa ataatagcca tatcaatatt atcctacttg
       61 ccatatcttc tacgacgtct ttgaaaagtc cgaattgctc tcataagatc tatttttctg
      121 aattctggcc aaaagacatc cataaaaacc aattcgctgt acgcgctctg ccacaaaaga
      181 aatccgctta atcgcttctc gccagaagtt cttaagataa ggtctggttc gggttgaggt
      241 aggtgagagg tgtaaagata tgaatcaatg gaattttcat taatatccga tattttaagt
      301 tctttcttct ctactgcatg tgcaattttt cggattgcct caactagttc ttgttgtcca
      361 ccgtatgcaa cagcaatatt aagaaatgta agatcgtaat gattagtctc tttttccagc
      421 ttgaacaaaa tatccttaat tgattgagga agtgagtcta tatttccaat ggccttaatt
      481 ttcatctccc gctcgtgtat tctggaatca ttgtatagtt tctcgagttt tgaagcaagt
      541 agactgtaga tatcttccaa ttccttctgg tcacgctcta gattttcaat cgataatacg
      601 tatagagtag taatcttaat cttgagatca tatatccaag tcagcaactg ttcagccttg
      661 tcagcaccca ttgcatgagc acctttactg gcaaaaaaat tgtattttgc ccatcgccta
      721 tttccgtcta atattatggc aacatgattt ggtaaagaat cttttcttat ttgtgattct
      781 aatttgcgtt catagaatct ataaaaccaa ttattgttaa ggaggtgata aaaaaagccg
      841 tacatttgac ctcaaattaa ctgattttaa atcatataat aatgctatga atccaagttt
      901 tactaatgtt tcagttgctc tccacctttt ttgtttctga aatattgaaa caaaaatgtc
      961 gtggcaacta gagtaatagc aagtccgatg agtaatgatg aaataagatt gaatggattg
     1021 gtcttttcag tcagtacaga ggtaaattga attgcaggta tgtatattgt accgagtata
     1081 accaatcgaa tgatatcgga aaatattcga atacttccct taaaccagtt acttaggaat
     1141 atcccaccaa atatagtacc taaccctatc cagatgagcg taattgcccc gttgacaaat
     1201 ccccctacta ctgctctagt cgtaatgatt tctgatatgc ttgcaccctt tgcaataact
     1261 ccatctggta tgtcagaaat accatttgat atacccacca aaattatcat gatacctgcg
     1321 aatgttgaaa atattcttat gaatgttgag ggggttgtcc tattaagaga acttagggat
     1381 ttgtcaatat caaacgccct cattacaaac gcaactccca gtacacttag aactatagcc
     1441 aaagcttctc gtgtaaaccc aaaaatagta gcgaatccgc ttgaaatcag aagggcgcca
     1501 ggtacgccca aaaagaattt tgaatatctt ggatcataaa ctaacatttt gacatatttt
     1561 ccaaaaacag catatgaata ttcaacactt ctactatgtc gaatgattat tctttgaatc
     1621 gatattacag gcaccattgc ctgaatgagt ggaattaccg tttcatcatc ttctccatca
     1681 gaaacaatga ctaccccttc ggctttgaat tttgatagta cttgtatcaa ctctgaggat
     1741 attttttcat ctgcctcgat acctcgattg taggctcccg taattaccgc aacttcagac
     1801 tcgtaacctt tggtcacaag ctcttcatat atcttgacgg cgccaaagat tgcgttcgaa
     1861 tcggcatctt ctggatcttc aattgccaat ctagtccctg cacttataca ttggtctctt
     1921 ccaaatacgg gagtctcaac acctccattt gtgcctagat catcgtctcg gtctatacaa
     1981 acgacaagta ctctcttgta gtgggttgaa agagaaccat agtccaaact ctttttatcc
     2041 ctaatgtatt ctaggtcctt tggcaatcta ttctacggac taaaatatgt agcagaggct
     2101 aattaatttg atggtccaat aatattagtg atttttagta ataataatac aatagcaaaa
     2161 aatagaaatc aaaattcatt tacatctcga attctagaga aaaatatggc aatactaagg
     2221 gccatcaaaa gaaaaatact tatgtaaaca tatccgtatc agataatcag ttggcctcaa
     2281 actcgaacac agatagctcc aggaacagaa gctctagata tgcattaaga actctcagat
     2341 atcagaattc actcatggta aacgtatgtg atctttcgtt aatagataag cagatacagc
     2401 atggtgatat cacaattgac attaagaaaa attactggat ggataaagta gctgatgaga
     2461 gcgaaattga atcatattta aaaaaatcat ctatttcaaa cttggccggt aaagatacgg
     2521 tggacaaagc aattgaattg aatctggcaa agagatccag tgtaaagtat ttttcagatg
     2581 ttccatttct gatgatatat aaattcagac aatcatattg actgtcactg gtcaaacaat
     2641 agataaataa caaagtcgtg aatcttaaac gagagtctcc cttttgaaca agaatgaaaa
     2701 tgaaagtcta agtttatcat tacttatccc agaagaccga atttcagtag ttataggaaa
     2761 taaagggaag acaaaaagtg aaatttgtaa aaaatgtact
//
LOCUS       DASPFX010000412         3065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1545594, whole genome shotgun sequence.
ACCESSION   DASPFX010000412 DASPFX010000000
VERSION     DASPFX010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1545594"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..463)
                     /locus_tag="VD694_08815"
     CDS             complement(50..463)
                     /locus_tag="VD694_08815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12848.1"
                     /translation="MLETCERVEPGKNNVVIPFMDTIKKSLPKQRAFDMTTTNRLGGF
                     LSLLPLVNVDKRPRLVVKKKNEPGFLAQIIPLALFEDLRETMHLMEYANGVRPYILEW
                     YNDVFLEAYNSKTTEDSKFNSKGELLTEKVIAATT"
     gene            complement(723..1175)
                     /locus_tag="VD694_08820"
     CDS             complement(723..1175)
                     /locus_tag="VD694_08820"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HXW12849.1"
                     /translation="MLKVNLKSLEKMTIYGANDDLNRRVTGGFALYSAAGTKSGSAVY
                     FELESGRELGVHTDSAEEIVYIVDGTLEITIGKEKNQISRGELGVVPVMEPHNFRNAG
                     SNTAKVVGFFSSPNVVSTFEREFLPLNLKEFDTTKLPPPKMQEQDTEQ"
     gene            complement(1428..1853)
                     /locus_tag="VD694_08825"
     CDS             complement(1428..1853)
                     /locus_tag="VD694_08825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12850.1"
                     /translation="MKNFLTDGNSEESRNYVSDILSGHTTRPEDLFVQKFLGVDFWKE
                     LGFKDKEIKIEYPAGVGGRVEITLKVDNEKIAVECKKPYIIKGKEVFKNVLDGEDINE
                     LQSQIGEYLYTHSFIIFTNGFYWYFYSRESYRSYCLLLC"
     gene            complement(2386..2526)
                     /locus_tag="VD694_08830"
     CDS             complement(2386..2526)
                     /locus_tag="VD694_08830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12851.1"
                     /translation="MIELINTGISGGLLVAAIYWIVRTIRKDRQDKFNKNDTTVAFGK
                     DS"
     gene            complement(2573..>3065)
                     /locus_tag="VD694_08835"
     CDS             complement(2573..>3065)
                     /locus_tag="VD694_08835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12852.1"
                     /translation="LDARRIEFITTAIICVVFAISFAHLEYYYIKDPALQISNGKVQV
                     DDPNFDRSRETKPIMGNLYQYHLFPMLFIFVLISFAALFDDMTFRLFGKGKRMKAFLL
                     GCANLISAIVVEDFAWFANRAVLPLEDDPKAGQLMQFSERNNLELIQLIGSEYFKKRS
                     KIL"
BASE COUNT          917 a          609 c          508 g         1031 t
ORIGIN      
        1 acaggaccac aatatctctc ttttccgtcg ggactcaaaa cactcttgct taggttgtgg
       61 ctgcaattac tttttccgtc agtaattcgc ctttgctatt aaacttagag tcttctgttg
      121 tcttggaatt atacgcttcc aaaaacacat cattgtacca ttctagaata tatggtctga
      181 ctccgttagc gtattccatc aaatgcattg tctctcgtaa gtcttcaaat aatgccaagg
      241 gaattatctg tgccaaaaaa ccaggctcat ttttcttttt tacaactaac ctaggcctct
      301 tatccacatt aaccaaagga agaagtgata agaatcctcc aagtctgttt gtggtagtca
      361 tgtcaaaggc cctttgtttt ggaagtgatt tctttattgt gtccataaaa ggaatgacca
      421 cgttattctt gcctggttca actctttcac aggtctccag cattttgtgt ttgatatctt
      481 tgataatttc ccttgctttt tctttgtcag gatcgcttac aactttggcc tgatatgcaa
      541 agtcaggaag tccaaatctg tcacatataa ggtctaccgc atttgaatat ttatcggctg
      601 atgacagtaa taatgctgtc tagtaattag taatctcggt tttcccttta tcaggcagat
      661 aattacaaaa tactatggtc gacgttttat ctgtgatggc tggtcagagg ctttagatta
      721 tgtcactgtt ctgtgtcctg ttcttgcatt ttcgggggcg gcaatttggt agtatcaaat
      781 tcctttaagt ttagaggtag aaattctctt tcaaaagtgc tgactacgtt tgggcttgaa
      841 aagaaaccga cgaccttggc tgtatttgat ccagcattac ggaaattatg tggttccatt
      901 acaggaacta ctcctaattc accacgcgaa atttgattct tctccttgcc gattgttatt
      961 tcaagtgtgc catctacaat atatacaatc tcctcagcac tatcagtgtg aactccgagt
     1021 tcacgtccgg attcaagttc aaaatatact gctgaaccac ttttcgttcc tgcagcacta
     1081 tacagcgcaa aacctcccgt tacgcgacga tttagatcat catttgctcc ataaattgtc
     1141 atcttttcta gggattttaa attgaccttg agcatttata gcgtaacaaa atcatgacat
     1201 ataaatttca tcattttcgg tcctttcctt gggaagataa gaaattattt ctaaaatgtt
     1261 aaagatagat ctagaatgtg tttgttatta tagcctcccc cttacttttt aggaataagc
     1321 cccccttact ttttagaact ttaatatcta ttctgtcatt aaataagtat acatatgaat
     1381 ccgcatcgac aggtaaggat ttattacttc ctagaactcc aatatattta gcatagtaga
     1441 agacaatatg atctgtatga ctctctggaa taaaaatacc aatagaatcc attagtgaat
     1501 atgataaaag agtgggtata caaatattct ccaatctggc tctgcaattc attgatatcc
     1561 tcaccatcaa gaacattctt gaatacttcc ttgcccttaa tgatataagg cttcttgcat
     1621 tctaccgcga ttttctcatt atcaactttt agcgtaatct ctaccctgcc gcctacaccg
     1681 gcggggtatt ctatctttat ttctttatct ttgaatccga gctctttcca gaagtctaca
     1741 cctaagaatt tctggacaaa cagatcttca ggccgtgtag tatgacctga aagaatatct
     1801 gagacatagt ttcttgactc ttctgaattg ccatcagtca aaaaattttt caattgctct
     1861 atctttatcc taggcggcac ttgcaaggat gaacgccaat agatgtagta tgcctagtta
     1921 ataattactt tggtcatatc gaagggaaga atccttacta tattcttcaa aaataaaaac
     1981 taaaaaatag tattaatttg agcaatgtct aattgcagag gaggctcatt tatcgtttta
     2041 actactaata attacaaatc tacgaaaatc aactgaaacc tattacttga acctcctatt
     2101 catccagggg ctgagtcttc ctgtcagagc agctgaaatg taggtcacga tgagtaatgg
     2161 atgttggtat ggagaggggg actccataat catccagaga gatgttagga cttcctaaga
     2221 atggaataat atttttattt tctgtggcaa tcacattgac attcatgttg accgtcacat
     2281 tgttttatga ctattagcca tgcatgctaa agataaattc atcatcatta gtattaagag
     2341 gaacctaaaa aatagtgaga atgggagtaa atatactaga atagtttagc tatcttttcc
     2401 aaatgcaaca gttgtatcat ttttattaaa tttgtcttgt ctatcctttc ttatggtcct
     2461 gacaatccaa taaatagccg caaccaataa accccctgat attccggtat taatcagttc
     2521 tatcatctat agtaatacca gcacaaattt atatatcact ttgtaagtta tgttatagga
     2581 ttttactccg ttttttgaaa tactccgagc caattaattg tatgagttct aaattattcc
     2641 gttcagaaaa ttgcattaac tgtcctgctt ttggatcgtc ttctagtggt agaacagctc
     2701 tgtttgcaaa ccaggcaaaa tcttctacga caatcgcact tatcaagtta gcacaaccaa
     2761 gaagaaatgc tttcatcctc tttccctttc caaacaacct aaacgtcata tcatcaaaca
     2821 atgcggcaaa acttatgaga acaaagataa acagcattgg aaagagatga tactgataca
     2881 agttgcccat tattggttta gtttccctgc tacgatcaaa gttgggatca tcgacctgca
     2941 cctttccatt tgaaatttgt aaagcaggat ctttgatgta atagtattct agatgagcaa
     3001 aactgatagc aaaaactaca cagatgatag cagttgtaat aaattctatt cttcttgcat
     3061 ctaaa
//
LOCUS       DASPFX010000413         6864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U16436
            k141_1177967, whole genome shotgun sequence.
ACCESSION   DASPFX010000413 DASPFX010000000
VERSION     DASPFX010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37935431
            Sequence Read Archive: SRR25158315
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/08/2024 17:02:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,755
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 22
            tRNAs                             :: 21
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6864
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177967"
                     /isolate="SMAG_U16436"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30.18 N 121.35 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VD694_08840"
     CDS             <1..632
                     /locus_tag="VD694_08840"
                     /inference="COORDINATES: protein motif:HMM:NF016553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12853.1"
                     /translation="LGSKFVINVGFSTIMQILSEISFLDKDQIHQNYLQYGDMGALAE
                     YATSKKHTVSLTQQQPLILPVVYEGFKKIAGTTGSDSSKVKKNILKGLFLDCSPLEAK
                     YLTKIINGEMRIGLTEGLVEVGVALAFNVELGKIREAMLVSGDISQIALLAKRGLLYT
                     AVIKPFQPIGYMLADVMFGADEIVNYFQKSLICEYKYDGIRARMHKFGQ"
     gene            639..1532
                     /locus_tag="VD694_08845"
     CDS             639..1532
                     /locus_tag="VD694_08845"
                     /inference="COORDINATES: protein motif:HMM:NF013252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12854.1"
                     /translation="MFSRNMTDITDAFPELVDATINSKLSSSMESIDFILDGEIMAIR
                     NGKPLHFQELQKRLRRKNVTGQIIAEVLVVYAVFDIALKDGEQTIMKPLKQRIEILSR
                     IFFKKPIVNTKHNVVNTAQEIIAKFDESRDIGYEGLVLKEQESQYHPGKRGRYWIKLK
                     RELDTIDAVIVIAEYGHGKRAGVLSDYTFAVRDENNDNQLRIIGKAYSGLTDKEIDTI
                     TKQLRSIMIKDNGYGIVVKPELILEISFDSIQKGDRHDSGFALRFPRIKNIRSDKNVT
                     DIDTLQKVRRIYENQTYLNAK"
     gene            1722..2003
                     /locus_tag="VD694_08850"
     CDS             1722..2003
                     /locus_tag="VD694_08850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12855.1"
                     /translation="MILAASAFNNGGINERRLNGEPAVIEYTTAAGEAFGNNDQRSAM
                     LPVTNGAAKLVPLIRVYTAPLEEVLLILAPGAINPLVPIVAPKLDAGSR"
     gene            2017..2202
                     /locus_tag="VD694_08855"
     CDS             2017..2202
                     /locus_tag="VD694_08855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12856.1"
                     /translation="MLLLVQPNDDNPKLRLIALAPALAVSIIAIANSSGVVLGKRISF
                     LSILFFSSRRQILVRTY"
     gene            complement(2398..2739)
                     /locus_tag="VD694_08860"
     CDS             complement(2398..2739)
                     /locus_tag="VD694_08860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12857.1"
                     /translation="MLADQGMVDKTLKSQSGRNFIIKYVPVSNGCIILISEDSDQIGA
                     ISVSISSSNKSNTAKVIPSKYDSIFLNTISEMVSKMKNGICITSLYSTKQLALDDMKI
                     IMDQLRDLIGT"
     gene            complement(3224..3775)
                     /locus_tag="VD694_08865"
     CDS             complement(3224..3775)
                     /locus_tag="VD694_08865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12858.1"
                     /translation="MDLAFESLSPQEAAESNTELVITTRTEAKFLTKKQILLDTDLPE
                     NLVLSKARIFRSIMRGYQDDHLIIGIDPGNRIGISIIYLQNEIESLVVSSPNSAIELV
                     IAFLEGIQSKNKIVRIGDGDMGMSQYIARMIKLKFKNAVNIELVDEYGTSLPRNTGVN
                     RRGIRDKLSAKTIALRCGRQFLH"
     gene            complement(4026..4361)
                     /locus_tag="VD694_08870"
     CDS             complement(4026..4361)
                     /locus_tag="VD694_08870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12859.1"
                     /translation="MKQVASVEGIINALSELEDDLDNISSKTDEMKRRLVNSSHEQIE
                     HLKENIINLANGEAKKIIDTARQEAEKESSTILKGSDNELANIKKNIESSYDKAVEVA
                     VRIILWGKA"
     gene            complement(4751..4930)
                     /locus_tag="VD694_08875"
     CDS             complement(4751..4930)
                     /locus_tag="VD694_08875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12860.1"
                     /translation="MTSFSRKAKLEIEVEIDIPIDIINDKQRFSLVEEGIVRSISKGL
                     YEQGVSFRILKSNMS"
     gene            5669..5929
                     /locus_tag="VD694_08880"
     CDS             5669..5929
                     /locus_tag="VD694_08880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12861.1"
                     /translation="MVKHNLIYDLLQSTKLSSSTVEINQEKCINQIYFVICNSCHWCA
                     TYFGINASLLSSLLACHGCASYNTEFMPIITDESFRIEYNPT"
     gene            complement(6542..>6864)
                     /locus_tag="VD694_08885"
     CDS             complement(6542..>6864)
                     /locus_tag="VD694_08885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HXW12862.1"
                     /translation="QVSAQITPSNFQSSDTGARLIGQDPADPVQNSTASNITQLATVP
                     ATINQPIAPASLTPAAEETDEISSSNGNDGNDGNVGGEGGDGGDGGDGDMFDGAFDGG
                     FPFN"
BASE COUNT         2230 a         1239 c         1235 g         2160 t
ORIGIN      
        1 cactcggatc caaattcgtc ataaatgtcg gatttagtac aatcatgcaa atactctctg
       61 aaatatcttt cctagataaa gaccaaatcc accagaacta tctgcaatat ggagatatgg
      121 gtgctctagc agagtatgca acatctaaaa aacataccgt ttcacttact cagcaacagc
      181 ctttaatact acctgtcgta tatgaaggat tcaaaaagat agctggtacc acgggatctg
      241 attcgtccaa agttaagaag aatatactaa aagggctctt tttggattgt tcacctcttg
      301 aagcaaaata cttgacaaag ataataaatg gagaaatgag aattgggcta acagagggat
      361 tagtagaagt aggagtcgca ttggcattta atgtagaact tggaaaaatc agagaagcga
      421 tgcttgtatc aggtgatata tctcaaatag cgctcttggc aaaaagaggt ttattatata
      481 ctgcagttat caaacccttt caaccaattg gatatatgct ggctgatgta atgttcggcg
      541 cagatgagat tgtcaactat tttcaaaaat cactgatttg cgagtacaaa tatgacggga
      601 tccgggctcg aatgcacaag tttggacaat aggtaaaaat tttttcacgc aatatgacag
      661 atattacaga tgcgtttcct gaactagttg atgccacaat aaatagcaaa ttgtcatcat
      721 caatggaaag tattgatttt attttggatg gagaaattat ggccattcgt aatggtaaac
      781 cacttcattt ccaggaattg caaaaacgac tgcgcagaaa gaatgttaca ggacaaatca
      841 ttgcagaagt tctagtagtg tatgcagtat ttgatattgc tctaaaggat ggagagcaaa
      901 ctatcatgaa gccacttaaa caaaggatag aaatcctatc aagaatattc ttcaagaaac
      961 caatcgttaa tacaaagcac aatgtcgtaa atacagcaca agaaataatt gcgaagtttg
     1021 atgaaagtag agatatagga tacgagggat tggtattaaa agagcaagag tctcaatatc
     1081 atccaggaaa aagaggacga tattggatca aactaaaacg agagttggat acaatcgatg
     1141 ctgtaattgt aatcgctgaa tatgggcatg gaaagagagc aggcgtctta tctgattata
     1201 catttgctgt acgagatgaa aataatgaca atcaattaag aatcattgga aaggcttatt
     1261 ctggattgac tgataaagaa atagacacga ttacaaagca attaagatcg atcatgataa
     1321 aagacaatgg ttacggaata gtagtaaagc ctgaattgat cttagagatt tcatttgata
     1381 gtattcagaa aggcgatagg catgatagtg gtttcgcatt acgatttcca aggataaaaa
     1441 atatccgaag tgacaaaaat gttacagata ttgatacgtt acaaaaagtc agacgcatat
     1501 atgaaaatca aacgtatcta aatgctaaat aattctattg acgataaata actaggtgac
     1561 tagttaattt ctaaaacaag caaattcgaa tcaatctgtc tgtatagatg gcgatgtata
     1621 gcttatgttc caataggcat tatgaaaata ataatagctc actttttgat gacttctaag
     1681 cagttctaag atgcaactac ttcattaagt aatttttcaa tttgattcta gctgcctccg
     1741 cattcaataa tggcggtatt aatgaacggc gtttgaatgg tgagcctgct gttatagaat
     1801 acactacagc ggcaggagaa gcgtttggaa ataacgacca aagaagtgct atgcttcctg
     1861 tcacaaatgg tgctgcaaag ctagtaccgc tcatacgagt atacaccgcg cctcttgaag
     1921 aggtactcct tatattagca ccaggggcca ttaatcctct agttcctata gtcgctccga
     1981 agttagatgc cggatcaaga tgaccatttt catcacatgc tgctactggt acaacccaat
     2041 gatgataatc ccaaactcag attaatagct ctcgctcctg cattggcagt atctattatt
     2101 gcaatagcca actcttctgg cgtagtactt ggaaaaagga tatctttttt gtcaatattg
     2161 ttcttttctt caaggcggca aattttggta aggacatatt agaattctaa ataaggtatt
     2221 aaaatattta agttttttct ttcaaatagt ggattatctt cataaacata agcgatactc
     2281 atacgattga aagagtacgg gttacatgta agcacgtatt aacgttccgc ctattgacga
     2341 taaatagcta ggcgcttaga ttcgaataaa tctgtccgta tagatggcga tgtatgatta
     2401 tgttccaata agatctcgta gctgatccat aataattttc atatcatcca atgctaattg
     2461 tttggtgctg tatagcgagg ttatgcatat tccattcttc attttggata ccatctcaga
     2521 gatagtattt aggaatattg agtcatattt acttggaatt actttggcag tattgctttt
     2581 attggacgat gaaatggaaa ctgagatagc tcctatttga tcagaatctt ccgatatcaa
     2641 tataatgcat ccattagaga cgggaacgta tttgatgatg aaatttcttc cgctttgaga
     2701 cttgagagtt ttatcgacca tcccttggtc tgccaacatc taatggttct tgccgtcctt
     2761 tacaacagat ggtcagactt gaactggaat aggattctct ggataaacct cttgcaattt
     2821 tttacgtgct ctcaatcttg ccttatattt caggttcctg ggctttgttc ttaacctata
     2881 tccacaacac gggcaccata gtccttccca cttgatgaat atctcacata tctggcaacg
     2941 tctttgtcca ctagcgtaac gaccagatcc gactggtttc tgggccttat gcctaccaca
     3001 tataccttta caagtcattc caattcatct attcctaagt aaaacctaac tctacctaat
     3061 acaataatgt aatacatagt atttaaattt atgcaaatat tatatagtga agtagttgcg
     3121 acacgaaaaa ttctaaagct tattaactag ttcaaacggc agcaggcaaa tgagctacaa
     3181 atagtttcag aaaagtaaga cgtgtgaaga ttctcatcgc atgtcagtgt aaaaattgcc
     3241 ttccacatct aagggcaatt gtcttggcag aaagcttatc tcgaattcct cgtctattta
     3301 ctcccgtgtt cctcggtaaa gaggtaccat attcgtctac aagttcgata ttgacagcgt
     3361 tcttaaattt caatttgatc atgcgagcaa tgtattgcga catacccata tcaccatccc
     3421 caattctaac aatcttattt ttagattgaa ttccctctaa gaatgctata actaattcta
     3481 tagcagaatt aggtgatgat acgactagac tttcaatttc attttgtaga tatattatag
     3541 aaattccaat acgattaccc ggatcaattc caattatcaa atgatcatct tgatatcctc
     3601 tcataatact tcgaaatatt cttgctttag acagcactag attttctgga agatctgtat
     3661 ccaaaaggat ctgcttttta gtcaaaaatt tagcttccgt tcttgtagtt ataactaact
     3721 ctgtatttga ttctgccgct tcttgaggcg aaagcgattc gaaggcaaga tccataagtt
     3781 ttaacgcatt aataattcta aagtaagaac gaccataaac cgtagcaacg gtgactttat
     3841 gctgtaacag ctccttgctc aggggcgttt catcgaagaa tcttgaacaa aatttattat
     3901 taaacttttt gggagtatgg agaactgttt ctgcattttc tacaaagtat taaggctctt
     3961 tacagtatca agcaatgacg gagtaacagt aatttgtcga aatctgctca agaggaaggt
     4021 gcgaattaag cttttcccca caaaataatt cttacggcca cttcaactgc cttatcatag
     4081 gaagattcaa tattcttttt tatatttgca agttcgttat ccgaaccttt gagaattgtg
     4141 gatgactctt tttcagcttc ctgcctagcc gtatcgataa ttttttttgc ttctccgttt
     4201 gccaagttta taatattctc tttgagatgt tcgatttgtt cgtgggacga gttgaccagg
     4261 cgcctcttca tttcatccgt tttgctgcta atattgtcaa gatcatcctc aagttcagat
     4321 aatgcattaa ttataccttc gacactagct acctgtttca agctcaaata ctttaaaaaa
     4381 ttgatcgata ttaaactttc cttttacaaa tatagctagt aaacctggca taagcttgta
     4441 atttgcgttg tgatcaccta attggataaa aatagaacaa tattactctt attttagtta
     4501 actattcact ttactcatat taaaactgta aaaaaattga tatcactagt gatgcttaag
     4561 cttgagggag gattggaaga gaattatctc cacatctcat tgaaattatc tcattaagtc
     4621 aatgttgtca ataagcactc ataaatcaca taggataatg tcaaggaatc atgtctaagt
     4681 gagcaagatt ctaatggaac gtacacctaa ccttgagaaa agaaatttaa gattcaagtg
     4741 tttctaacct tcaactcatg tttgatttta ggattctaaa tgatactccc tgctcgtaga
     4801 gacctttaga aatacttcta acaatccctt cctcaactag actgaaccgc tgtttatcat
     4861 taataatgtc tattggtata tcaatctcaa cttcgatttc taattttgct tttcttgaaa
     4921 atgaagtcat ctattttgtg aattagaaca atctttttag ttatatctct tacttggaga
     4981 ggcctagtgt gaactattga gaatataccc ccttttcatg gatgcaaaag tatttcattc
     5041 atttagatca aatttggtaa atgtcttgtc acgatacgtc ctatcgtact tctataaatt
     5101 gacccgttct aatacagtgt cagtgaaaaa ataggattga ctggcctcta gtctttcatt
     5161 gactactggc atggaataat ttttttatac tgcaatcaaa tactggacta gagcggatac
     5221 attagctact gcttgatgat cactagtaac tttctgtgct aacagcccat cgtctgaatt
     5281 tgttaccata cgattctcta tgtgaatcat aatatactgt ataaacagta actgtctgat
     5341 gacggagaga atgtcagttc ataattcgga tatgcttaga tgatgagtca gagcgtatgg
     5401 ttgcaacata tatggagagc ctcgatatct gtcaaaaata cggtgaaatg aattgaaagg
     5461 atccccgata cttttatgat tggctgagaa ttacctatat tagaaagacc attttatgat
     5521 gatgattttg ctgtatgtgt acttataagg cattctaata gattagccat tacgatccga
     5581 tgattacgga cgaaatgggg tgcatacgta cactctatag ttcaataagg taacgtataa
     5641 aactaaggtt gtgatcacaa ggcttggaat ggttaaacat aatttaattt atgacttatt
     5701 gcaatcaaca aagctctctt caagcactgt agaaataaat caagaaaaat gtatcaatca
     5761 aatctatttt gtaatttgta attcatgtca ttggtgtgca acttactttg gaattaatgc
     5821 atcgttatta tcatcgttac ttgcttgtca tggttgcgcc tcttataaca ccgaattcat
     5881 gcctataata actgatgaat cgtttagaat agaatataac ccaacatgag gttaataacc
     5941 caaaacaatc gcaaatacag caggagaacc tgcagcagaa actgcagcag agttttcagc
     6001 taacagacaa aaagaggtat atggatagaa taggaatatc tggttagcta ataactagat
     6061 tttacaatct ttaaatgtca ttgttgttgt acttagtaac aaaagtcact tcgtttcaat
     6121 agacaaataa tcacaaaaaa accagaatgt tgaacgtcaa cctggtattc tgtgagtgct
     6181 tgattgttag cgttgaattc tatgcaaaga gttgatgggg agtgacatcc attaacttaa
     6241 ttgaaaagtg tcatttatga caattcgatc taattggcat ctcatagtgt ctgtcaagat
     6301 agtcgactat ttcaaacaga actcaaagtc tatattctca tcgaacatat aaacaaaata
     6361 taattaatga ccatgttgtg gttagcagtg gacgaccaag aaactatcat tataaagatc
     6421 tactatcaag tatcatataa tatcgataaa ccattcttta gacgtggtgt ccatcatact
     6481 ttattatccc atgaaaaata ggaataaagt tactgtgtac tcactcccgg gaaaattcca
     6541 actaattgaa tgggaaccct ccatcaaatg caccatcaaa catgtcgcca tcgcctccat
     6601 cgcctccatc acctccctca ccgccaacat taccatcatt accatcatta ccattactgc
     6661 tactaatttc gtcagtttcc tcagcggccg gagttaatga tgcaggcgca attggctgat
     6721 taatggtagc gggaacagta gcaagttggg ttatgttcga agccgtgctg ttctgaacag
     6781 gatcagctgg atcttgtccg attaatctag ctccagtgtc tgaagactgg aaatttgagg
     6841 gagttatctg agcagacact tgat
//
